16.83 38.025 -13.246 14.559 A O5' DC 1 ATOM A O5' DC 1 1 1.00 1 O 15.99 39.465 -13.354 14.416 A C5' DC 1 ATOM A C5' DC 1 1 1.00 1 C 16.06 40.164 -13.198 13.073 A C4' DC 1 ATOM A C4' DC 1 1 1.00 1 C 15.10 39.669 -14.121 12.032 A O4' DC 1 ATOM A O4' DC 1 1 1.00 1 O 16.57 39.956 -11.747 12.600 A C3' DC 1 ATOM A C3' DC 1 1 1.00 1 C 19.07 41.078 -11.063 11.978 A O3' DC 1 ATOM A O3' DC 1 1 1.00 1 O 15.21 38.751 -11.822 11.774 A C2' DC 1 ATOM A C2' DC 1 1 1.00 1 C 14.84 38.871 -13.283 11.117 A C1' DC 1 ATOM A C1' DC 1 1 1.00 1 C 13.64 37.520 -13.943 10.749 A N1 DC 1 ATOM A N1 DC 1 1 1.00 1 N 13.57 37.302 -14.347 9.461 A C2 DC 1 ATOM A C2 DC 1 1 1.00 1 C 14.79 38.160 -14.010 8.691 A O2 DC 1 ATOM A O2 DC 1 1 1.00 1 O 12.77 36.170 -15.042 9.024 A N3 DC 1 ATOM A N3 DC 1 1 1.00 1 N 12.82 35.184 -15.309 9.872 A C4 DC 1 ATOM A C4 DC 1 1 1.00 1 C 10.67 34.026 -15.809 9.431 A N4 DC 1 ATOM A N4 DC 1 1 1.00 1 N 13.91 35.352 -14.943 11.294 A C5 DC 1 ATOM A C5 DC 1 1 1.00 1 C 14.09 36.547 -14.183 11.665 A C6 DC 1 ATOM A C6 DC 1 1 1.00 1 C 20.16 41.213 -9.445 12.110 A P DC 2 ATOM A P DC 1 2 1.00 1 P 21.61 42.543 -9.006 12.200 A OP1 DC 2 ATOM A OP1 DC 1 2 1.00 1 O 22.26 40.109 -8.457 12.715 A OP2 DC 2 ATOM A OP2 DC 1 2 1.00 1 O 21.74 40.863 -9.211 10.529 A O5' DC 2 ATOM A O5' DC 1 2 1.00 1 O 19.60 41.919 -9.212 9.607 A C5' DC 2 ATOM A C5' DC 1 2 1.00 1 C 20.08 41.278 -9.154 8.279 A C4' DC 2 ATOM A C4' DC 1 2 1.00 1 C 19.34 40.298 -10.229 8.140 A O4' DC 2 ATOM A O4' DC 1 2 1.00 1 O 20.56 40.509 -7.814 8.344 A C3' DC 2 ATOM A C3' DC 1 2 1.00 1 C 20.00 40.181 -7.232 7.111 A O3' DC 2 ATOM A O3' DC 1 2 1.00 1 O 20.99 39.160 -8.282 8.683 A C2' DC 2 ATOM A C2' DC 1 2 1.00 1 C 19.77 39.110 -9.508 7.764 A C1' DC 2 ATOM A C1' DC 1 2 1.00 1 C 18.61 37.844 -10.162 8.086 A N1 DC 2 ATOM A N1 DC 1 2 1.00 1 N 18.54 37.007 -10.812 7.053 A C2 DC 2 ATOM A C2 DC 1 2 1.00 1 C 19.89 37.330 -10.787 5.849 A O2 DC 2 ATOM A O2 DC 1 2 1.00 1 O 17.84 35.870 -11.397 7.437 A N3 DC 2 ATOM A N3 DC 1 2 1.00 1 N 17.92 35.512 -11.364 8.741 A C4 DC 2 ATOM A C4 DC 1 2 1.00 1 C 17.74 34.324 -12.064 9.161 A N4 DC 2 ATOM A N4 DC 1 2 1.00 1 N 16.89 36.293 -10.650 9.715 A C5 DC 2 ATOM A C5 DC 1 2 1.00 1 C 17.87 37.403 -10.107 9.350 A C6 DC 2 ATOM A C6 DC 1 2 1.00 1 C 7.08 33.295 -9.235 5.742 A N1 1AP 3 HETATM A N1 1AP 1 3 1.00 1 N 7.34 33.684 -9.149 4.591 A C2 1AP 3 HETATM A C2 1AP 1 3 1.00 1 C 8.88 35.431 -7.854 4.951 A C4 1AP 3 HETATM A C4 1AP 1 3 1.00 1 C 8.32 35.198 -7.962 6.281 A C5 1AP 3 HETATM A C5 1AP 1 3 1.00 1 C 7.90 33.986 -8.647 6.635 A C6 1AP 3 HETATM A C6 1AP 1 3 1.00 1 C 10.28 36.734 -6.355 6.155 A C8 1AP 3 HETATM A C8 1AP 1 3 1.00 1 C 10.99 33.206 -10.029 3.989 A N2 1AP 3 HETATM A N2 1AP 1 3 1.00 1 N 7.54 34.616 -8.510 4.042 A N3 1AP 3 HETATM A N3 1AP 1 3 1.00 1 N 10.34 36.509 -6.850 4.791 A N9 1AP 3 HETATM A N9 1AP 1 3 1.00 1 N 9.27 36.100 -7.173 7.056 A N7 1AP 3 HETATM A N7 1AP 1 3 1.00 1 N 8.32 33.527 -8.738 7.662 A N6 1AP 3 HETATM A N6 1AP 1 3 1.00 1 N 22.89 40.587 -5.684 6.826 A P 1AP 3 HETATM A P 1AP 1 3 1.00 1 P 23.07 42.011 -5.701 7.030 A OP1 1AP 3 HETATM A OP1 1AP 1 3 1.00 1 O 24.05 39.782 -4.717 7.670 A OP2 1AP 3 HETATM A OP2 1AP 1 3 1.00 1 O 20.15 40.166 -5.600 5.216 A O5' 1AP 3 HETATM A O5' 1AP 1 3 1.00 1 O 18.39 40.525 -6.756 4.167 A C5' 1AP 3 HETATM A C5' 1AP 1 3 1.00 1 C 16.47 39.555 -6.872 2.965 A C4' 1AP 3 HETATM A C4' 1AP 1 3 1.00 1 C 15.23 38.247 -7.344 3.441 A O4' 1AP 3 HETATM A O4' 1AP 1 3 1.00 1 O 11.82 37.357 -6.469 3.648 A C1' 1AP 3 HETATM A C1' 1AP 1 3 1.00 1 C 13.81 38.012 -5.176 3.387 A C2' 1AP 3 HETATM A C2' 1AP 1 3 1.00 1 C 16.25 39.176 -5.503 2.456 A C3' 1AP 3 HETATM A C3' 1AP 1 3 1.00 1 C 17.15 38.828 -5.389 1.068 A O3' 1AP 3 HETATM A O3' 1AP 1 3 1.00 1 O 17.61 38.073 -4.020 0.592 A P DG 4 ATOM A P DG 1 4 1.00 1 P 17.00 38.853 -4.420 -0.607 A OP1 DG 4 ATOM A OP1 DG 1 4 1.00 1 O 16.42 38.014 -2.657 1.021 A OP2 DG 4 ATOM A OP2 DG 1 4 1.00 1 O 16.61 36.506 -4.573 0.536 A O5' DG 4 ATOM A O5' DG 1 4 1.00 1 O 11.55 36.158 -5.610 -0.281 A C5' DG 4 ATOM A C5' DG 1 4 1.00 1 C 8.22 34.708 -5.888 -0.145 A C4' DG 4 ATOM A C4' DG 1 4 1.00 1 C 7.91 34.556 -6.186 1.297 A O4' DG 4 ATOM A O4' DG 1 4 1.00 1 O 8.96 33.742 -4.740 -0.547 A C3' DG 4 ATOM A C3' DG 1 4 1.00 1 C 7.74 32.797 -5.140 -1.342 A O3' DG 4 ATOM A O3' DG 1 4 1.00 1 O 8.81 33.063 -4.322 0.821 A C2' DG 4 ATOM A C2' DG 1 4 1.00 1 C 7.04 33.290 -5.605 1.692 A C1' DG 4 ATOM A C1' DG 1 4 1.00 1 C 6.36 33.291 -5.299 3.153 A N9 DG 4 ATOM A N9 DG 1 4 1.00 1 N 5.03 34.096 -4.625 3.883 A C8 DG 4 ATOM A C8 DG 1 4 1.00 1 C 7.86 33.758 -4.693 5.112 A N7 DG 4 ATOM A N7 DG 1 4 1.00 1 N 6.44 32.665 -5.555 5.199 A C5 DG 4 ATOM A C5 DG 1 4 1.00 1 C 6.48 31.871 -6.043 6.338 A C6 DG 4 ATOM A C6 DG 1 4 1.00 1 C 5.95 32.031 -5.805 7.541 A O6 DG 4 ATOM A O6 DG 1 4 1.00 1 O 6.92 30.840 -6.897 5.937 A N1 DG 4 ATOM A N1 DG 1 4 1.00 1 N 7.08 30.620 -7.270 4.591 A C2 DG 4 ATOM A C2 DG 1 4 1.00 1 C 8.02 29.717 -8.255 4.274 A N2 DG 4 ATOM A N2 DG 1 4 1.00 1 N 6.87 31.384 -6.709 3.585 A N3 DG 4 ATOM A N3 DG 1 4 1.00 1 N 6.10 32.335 -5.894 3.992 A C4 DG 4 ATOM A C4 DG 1 4 1.00 1 C 9.49 31.890 -4.094 -1.983 A P DT 5 ATOM A P DT 1 5 1.00 1 P 9.85 31.477 -4.589 -3.285 A OP1 DT 5 ATOM A OP1 DT 1 5 1.00 1 O 12.25 32.326 -2.700 -1.971 A OP2 DT 5 ATOM A OP2 DT 1 5 1.00 1 O 9.22 30.532 -4.121 -1.217 A O5' DT 5 ATOM A O5' DT 1 5 1.00 1 O 6.06 29.754 -5.262 -1.332 A C5' DT 5 ATOM A C5' DT 1 5 1.00 1 C 6.21 28.565 -5.127 -0.474 A C4' DT 5 ATOM A C4' DT 1 5 1.00 1 C 4.61 29.192 -5.194 0.843 A O4' DT 5 ATOM A O4' DT 1 5 1.00 1 O 6.34 27.730 -3.865 -0.612 A C3' DT 5 ATOM A C3' DT 1 5 1.00 1 C 8.53 26.538 -4.057 -0.271 A O3' DT 5 ATOM A O3' DT 1 5 1.00 1 O 5.72 27.820 -3.272 0.740 A C2' DT 5 ATOM A C2' DT 1 5 1.00 1 C 5.04 28.345 -4.516 1.660 A C1' DT 5 ATOM A C1' DT 1 5 1.00 1 C 6.39 29.091 -4.067 2.995 A N1 DT 5 ATOM A N1 DT 1 5 1.00 1 N 5.55 28.525 -4.479 4.180 A C2 DT 5 ATOM A C2 DT 1 5 1.00 1 C 5.71 27.548 -5.347 4.273 A O2 DT 5 ATOM A O2 DT 1 5 1.00 1 O 6.27 29.102 -3.919 5.196 A N3 DT 5 ATOM A N3 DT 1 5 1.00 1 N 6.92 30.256 -3.112 5.301 A C4 DT 5 ATOM A C4 DT 1 5 1.00 1 C 7.03 30.698 -2.871 6.339 A O4 DT 5 ATOM A O4 DT 1 5 1.00 1 O 5.91 30.822 -2.770 4.132 A C5 DT 5 ATOM A C5 DT 1 5 1.00 1 C 9.36 32.027 -1.959 4.157 A C7 DT 5 ATOM A C7 DT 1 5 1.00 1 C 6.55 30.250 -3.232 3.043 A C6 DT 5 ATOM A C6 DT 1 5 1.00 1 C 10.00 25.366 -3.274 -0.931 A P DA 6 ATOM A P DA 1 6 1.00 1 P 11.86 25.452 -4.015 -1.978 A OP1 DA 6 ATOM A OP1 DA 1 6 1.00 1 O 14.00 25.748 -1.700 -0.936 A OP2 DA 6 ATOM A OP2 DA 1 6 1.00 1 O 9.96 24.020 -3.786 -0.409 A O5' DA 6 ATOM A O5' DA 1 6 1.00 1 O 8.57 23.752 -5.077 0.134 A C5' DA 6 ATOM A C5' DA 1 6 1.00 1 C 8.71 22.821 -4.922 1.301 A C4' DA 6 ATOM A C4' DA 1 6 1.00 1 C 8.40 23.617 -4.520 2.392 A O4' DA 6 ATOM A O4' DA 1 6 1.00 1 O 11.15 21.726 -3.931 1.309 A C3' DA 6 ATOM A C3' DA 1 6 1.00 1 C 13.86 20.617 -4.376 2.063 A O3' DA 6 ATOM A O3' DA 1 6 1.00 1 O 10.24 22.257 -2.784 2.194 A C2' DA 6 ATOM A C2' DA 1 6 1.00 1 C 8.75 23.234 -3.419 3.077 A C1' DA 6 ATOM A C1' DA 1 6 1.00 1 C 6.02 24.517 -2.663 3.519 A N9 DA 6 ATOM A N9 DA 1 6 1.00 1 N 6.64 25.448 -2.146 2.714 A C8 DA 6 ATOM A C8 DA 1 6 1.00 1 C 4.57 26.467 -1.629 3.271 A N7 DA 6 ATOM A N7 DA 1 6 1.00 1 N 5.13 26.141 -1.756 4.638 A C5 DA 6 ATOM A C5 DA 1 6 1.00 1 C 3.26 26.841 -1.305 5.922 A C6 DA 6 ATOM A C6 DA 1 6 1.00 1 C 2.47 27.789 -0.614 5.903 A N6 DA 6 ATOM A N6 DA 1 6 1.00 1 N 3.69 26.365 -1.749 7.067 A N1 DA 6 ATOM A N1 DA 1 6 1.00 1 N 2.47 25.328 -2.576 6.930 A C2 DA 6 ATOM A C2 DA 1 6 1.00 1 C 3.33 24.624 -2.925 5.956 A N3 DA 6 ATOM A N3 DA 1 6 1.00 1 N 5.01 25.013 -2.477 4.792 A C4 DA 6 ATOM A C4 DA 1 6 1.00 1 C 15.39 19.255 -3.418 2.094 A P DC 7 ATOM A P DC 1 7 1.00 1 P 15.50 18.704 -4.729 1.470 A OP1 DC 7 ATOM A OP1 DC 1 7 1.00 1 O 15.81 19.119 -2.094 1.335 A OP2 DC 7 ATOM A OP2 DC 1 7 1.00 1 O 13.91 19.093 -2.893 3.473 A O5' DC 7 ATOM A O5' DC 1 7 1.00 1 O 15.53 20.181 -2.994 4.328 A C5' DC 7 ATOM A C5' DC 1 7 1.00 1 C 14.47 19.763 -2.534 5.701 A C4' DC 7 ATOM A C4' DC 1 7 1.00 1 C 12.70 21.039 -1.976 5.815 A O4' DC 7 ATOM A O4' DC 1 7 1.00 1 O 15.61 18.748 -1.398 5.722 A C3' DC 7 ATOM A C3' DC 1 7 1.00 1 C 19.64 17.855 -1.301 6.850 A O3' DC 7 ATOM A O3' DC 1 7 1.00 1 O 12.66 19.558 -0.198 5.431 A C2' DC 7 ATOM A C2' DC 1 7 1.00 1 C 11.52 20.862 -0.636 6.030 A C1' DC 7 ATOM A C1' DC 1 7 1.00 1 C 8.30 22.103 -0.003 5.674 A N1 DC 7 ATOM A N1 DC 1 7 1.00 1 N 8.33 23.065 0.242 6.709 A C2 DC 7 ATOM A C2 DC 1 7 1.00 1 C 7.47 22.910 -0.336 7.726 A O2 DC 7 ATOM A O2 DC 1 7 1.00 1 O 5.73 24.175 1.056 6.489 A N3 DC 7 ATOM A N3 DC 1 7 1.00 1 N 6.86 24.452 1.256 5.230 A C4 DC 7 ATOM A C4 DC 1 7 1.00 1 C 4.77 25.502 1.848 4.911 A N4 DC 7 ATOM A N4 DC 1 7 1.00 1 N 7.57 23.593 0.794 4.156 A C5 DC 7 ATOM A C5 DC 1 7 1.00 1 C 7.15 22.368 0.304 4.445 A C6 DC 7 ATOM A C6 DC 1 7 1.00 1 C 22.98 16.695 -0.014 7.004 A P DT 8 ATOM A P DT 1 8 1.00 1 P 22.38 15.323 -0.583 6.849 A OP1 DT 8 ATOM A OP1 DT 1 8 1.00 1 O 22.69 16.937 1.290 6.004 A OP2 DT 8 ATOM A OP2 DT 1 8 1.00 1 O 19.51 16.998 0.508 8.475 A O5' DT 8 ATOM A O5' DT 1 8 1.00 1 O 16.17 17.957 -0.195 9.316 A C5' DT 8 ATOM A C5' DT 1 8 1.00 1 C 13.80 18.216 0.665 10.515 A C4' DT 8 ATOM A C4' DT 1 8 1.00 1 C 11.88 19.385 1.271 10.322 A O4' DT 8 ATOM A O4' DT 1 8 1.00 1 O 13.11 17.281 1.764 10.804 A C3' DT 8 ATOM A C3' DT 1 8 1.00 1 C 12.28 16.979 1.722 12.149 A O3' DT 8 ATOM A O3' DT 1 8 1.00 1 O 12.37 17.961 2.987 10.144 A C2' DT 8 ATOM A C2' DT 1 8 1.00 1 C 10.81 19.327 2.646 10.179 A C1' DT 8 ATOM A C1' DT 1 8 1.00 1 C 9.66 20.265 3.043 9.027 A N1 DT 8 ATOM A N1 DT 1 8 1.00 1 N 8.92 21.551 3.468 9.372 A C2 DT 8 ATOM A C2 DT 1 8 1.00 1 C 9.59 21.913 3.566 10.407 A O2 DT 8 ATOM A O2 DT 1 8 1.00 1 O 8.48 22.371 3.772 8.340 A N3 DT 8 ATOM A N3 DT 1 8 1.00 1 N 8.28 22.048 3.701 7.011 A C4 DT 8 ATOM A C4 DT 1 8 1.00 1 C 8.19 22.879 4.040 6.235 A O4 DT 8 ATOM A O4 DT 1 8 1.00 1 O 7.17 20.701 3.292 6.748 A C5 DT 8 ATOM A C5 DT 1 8 1.00 1 C 8.53 20.262 3.265 5.415 A C7 DT 8 ATOM A C7 DT 1 8 1.00 1 C 7.97 19.918 2.992 7.689 A C6 DT 8 ATOM A C6 DT 1 8 1.00 1 C 13.37 16.471 3.057 13.016 A P DG 9 ATOM A P DG 1 9 1.00 1 P 13.24 15.816 2.124 13.753 A OP1 DG 9 ATOM A OP1 DG 1 9 1.00 1 O 14.04 15.860 4.114 12.458 A OP2 DG 9 ATOM A OP2 DG 1 9 1.00 1 O 11.45 17.400 3.854 13.971 A O5' DG 9 ATOM A O5' DG 1 9 1.00 1 O 12.89 18.660 3.972 13.792 A C5' DG 9 ATOM A C5' DG 1 9 1.00 1 C 12.33 19.221 5.056 14.700 A C4' DG 9 ATOM A C4' DG 1 9 1.00 1 C 13.65 20.034 5.670 13.746 A O4' DG 9 ATOM A O4' DG 1 9 1.00 1 O 13.38 18.390 6.257 15.160 A C3' DG 9 ATOM A C3' DG 1 9 1.00 1 C 16.23 19.048 6.955 16.177 A O3' DG 9 ATOM A O3' DG 1 9 1.00 1 O 12.03 18.013 6.952 13.899 A C2' DG 9 ATOM A C2' DG 1 9 1.00 1 C 12.26 19.374 6.767 13.258 A C1' DG 9 ATOM A C1' DG 1 9 1.00 1 C 10.47 19.530 6.753 11.845 A N9 DG 9 ATOM A N9 DG 1 9 1.00 1 N 11.17 18.637 6.255 10.928 A C8 DG 9 ATOM A C8 DG 1 9 1.00 1 C 10.95 19.118 6.307 9.732 A N7 DG 9 ATOM A N7 DG 1 9 1.00 1 N 9.78 20.353 6.955 9.896 A C5 DG 9 ATOM A C5 DG 1 9 1.00 1 C 8.26 21.298 7.143 8.928 A C6 DG 9 ATOM A C6 DG 1 9 1.00 1 C 6.86 21.236 6.740 7.857 A O6 DG 9 ATOM A O6 DG 1 9 1.00 1 O 8.38 22.413 7.671 9.437 A N1 DG 9 ATOM A N1 DG 1 9 1.00 1 N 8.18 22.674 7.841 10.740 A C2 DG 9 ATOM A C2 DG 1 9 1.00 1 C 7.10 24.055 8.295 11.068 A N2 DG 9 ATOM A N2 DG 1 9 1.00 1 N 9.17 21.709 7.575 11.738 A N3 DG 9 ATOM A N3 DG 1 9 1.00 1 N 9.33 20.616 7.185 11.193 A C4 DG 9 ATOM A C4 DG 1 9 1.00 1 C 19.70 18.468 8.406 16.711 A P DG 10 ATOM A P DG 1 10 1.00 1 P 18.26 18.467 8.413 18.141 A OP1 DG 10 ATOM A OP1 DG 1 10 1.00 1 O 19.63 17.213 8.600 15.813 A OP2 DG 10 ATOM A OP2 DG 1 10 1.00 1 O 18.09 19.386 9.590 16.665 A O5' DG 10 ATOM A O5' DG 1 10 1.00 1 O 19.76 20.611 9.375 16.288 A C5' DG 10 ATOM A C5' DG 1 10 1.00 1 C 19.86 21.070 10.601 15.536 A C4' DG 10 ATOM A C4' DG 1 10 1.00 1 C 18.34 21.424 10.548 14.099 A O4' DG 10 ATOM A O4' DG 1 10 1.00 1 O 19.24 20.120 11.790 15.724 A C3' DG 10 ATOM A C3' DG 1 10 1.00 1 C 19.28 21.142 12.526 15.374 A O3' DG 10 ATOM A O3' DG 1 10 1.00 1 O 18.92 19.316 11.727 14.465 A C2' DG 10 ATOM A C2' DG 1 10 1.00 1 C 17.45 20.425 11.450 13.446 A C1' DG 10 ATOM A C1' DG 1 10 1.00 1 C 16.35 19.941 10.852 12.185 A N9 DG 10 ATOM A N9 DG 1 10 1.00 1 N 15.57 18.912 10.010 11.968 A C8 DG 10 ATOM A C8 DG 1 10 1.00 1 C 14.02 18.818 9.587 10.725 A N7 DG 10 ATOM A N7 DG 1 10 1.00 1 N 15.23 19.776 10.252 10.059 A C5 DG 10 ATOM A C5 DG 1 10 1.00 1 C 14.30 20.108 10.198 8.755 A C6 DG 10 ATOM A C6 DG 1 10 1.00 1 C 15.49 19.411 9.759 7.826 A O6 DG 10 ATOM A O6 DG 1 10 1.00 1 O 14.71 21.306 10.727 8.518 A N1 DG 10 ATOM A N1 DG 1 10 1.00 1 N 15.58 22.189 11.409 9.323 A C2 DG 10 ATOM A C2 DG 1 10 1.00 1 C 15.40 23.438 11.792 8.753 A N2 DG 10 ATOM A N2 DG 1 10 1.00 1 N 16.36 21.884 11.663 10.603 A N3 DG 10 ATOM A N3 DG 1 10 1.00 1 N 16.49 20.582 11.004 10.923 A C4 DG 10 ATOM A C4 DG 1 10 1.00 1 C 20.92 29.496 -0.007 0.017 A CA CA 11 HETATM B CA CA 2 0.50 1 CA 8.99 19.344 0.033 -0.034 A CA CA 14 HETATM C CA CA 2 0.50 1 CA 7.49 31.335 -4.168 -5.747 A NA NA 15 HETATM D NA NA 3 1.00 1 NA 4.39 40.749 -11.899 4.100 A O HOH 12 HETATM E O HOH 4 1.00 1 O 6.63 35.246 -10.662 -0.225 A O HOH 13 HETATM E O HOH 4 1.00 1 O 21.84 14.974 0.198 13.640 A O HOH 16 HETATM E O HOH 4 1.00 1 O 9.94 35.661 -12.708 14.227 A O HOH 17 HETATM E O HOH 4 1.00 1 O 12.63 20.548 3.060 2.259 A O HOH 18 HETATM E O HOH 4 1.00 1 O 13.89 28.218 -7.915 1.868 A O HOH 19 HETATM E O HOH 4 1.00 1 O 10.48 27.634 0.733 2.447 A O HOH 20 HETATM E O HOH 4 1.00 1 O 23.35 38.707 -9.843 4.179 A O HOH 21 HETATM E O HOH 4 1.00 1 O 12.41 22.616 -4.579 -3.448 A O HOH 22 HETATM E O HOH 4 1.00 1 O 21.89 18.461 0.806 3.160 A O HOH 23 HETATM E O HOH 4 1.00 1 O 25.84 42.432 -4.953 -8.496 A O HOH 24 HETATM E O HOH 4 1.00 1 O 18.01 36.176 -9.464 12.929 A O HOH 25 HETATM E O HOH 4 1.00 1 O 36.96 14.786 9.269 8.653 A O HOH 26 HETATM E O HOH 4 1.00 1 O 8.85 33.409 -11.686 0.543 A O HOH 27 HETATM E O HOH 4 1.00 1 O 18.31 20.743 0.640 1.787 A O HOH 28 HETATM E O HOH 4 1.00 1 O 7.43 39.350 -1.694 3.067 A O HOH 29 HETATM E O HOH 4 1.00 1 O 13.54 41.792 -13.299 8.477 A O HOH 30 HETATM E O HOH 4 1.00 1 O 20.32 30.378 -2.650 -5.780 A O HOH 31 HETATM E O HOH 4 1.00 1 O 18.98 13.213 7.636 7.381 A O HOH 32 HETATM E O HOH 4 0.50 1 O 25.30 41.510 -5.622 10.465 A O HOH 33 HETATM E O HOH 4 1.00 1 O 22.98 14.003 -1.229 3.377 A O HOH 34 HETATM E O HOH 4 1.00 1 O 23.78 33.678 -8.898 -0.096 A O HOH 35 HETATM E O HOH 4 1.00 1 O 22.58 31.510 -6.686 -4.704 A O HOH 36 HETATM E O HOH 4 1.00 1 O 37.03 24.191 -0.656 -0.134 A O HOH 37 HETATM E O HOH 4 1.00 1 O 24.06 34.683 -1.165 2.647 A O HOH 38 HETATM E O HOH 4 1.00 1 O 36.03 32.931 -8.376 -2.000 A O HOH 41 HETATM E O HOH 4 1.00 1 O 17.71 29.573 0.976 3.630 A O HOH 42 HETATM E O HOH 4 1.00 1 O 23.82 16.836 9.152 19.774 A O HOH 43 HETATM E O HOH 4 1.00 1 O 27.29 43.030 -7.799 2.365 A O HOH 44 HETATM E O HOH 4 1.00 1 O 35.98 31.606 -1.893 0.056 A O HOH 45 HETATM E O HOH 4 1.00 1 O 30.44 43.828 -2.826 -5.187 A O HOH 46 HETATM E O HOH 4 1.00 1 O 26.21 43.285 -7.288 5.941 A O HOH 47 HETATM E O HOH 4 1.00 1 O 36.32 40.565 -11.654 6.722 A O HOH 48 HETATM E O HOH 4 1.00 1 O 23.34 26.408 -5.732 2.547 A O HOH 49 HETATM E O HOH 4 1.00 1 O 21.87 35.838 -2.883 -3.092 A O HOH 50 HETATM E O HOH 4 1.00 1 O 26.86 39.373 -1.951 -5.555 A O HOH 51 HETATM E O HOH 4 1.00 1 O 25.74 36.769 -0.645 -7.025 A O HOH 52 HETATM E O HOH 4 1.00 1 O 49.09 15.109 6.478 12.863 A O HOH 53 HETATM E O HOH 4 1.00 1 O 34.14 14.190 7.554 19.893 A O HOH 54 HETATM E O HOH 4 1.00 1 O 35.13 41.192 -9.062 5.836 A O HOH 55 HETATM E O HOH 4 1.00 1 O 0.030343 0.017518 0.000000 0.000000 0.035037 0.000000 0.000000 0.000000 0.011292 0.00000 0.00000 0.00000 Hays, F.A. Watson, J. Ho, P.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 32.957 32.957 88.556 C10 H15 N6 O6 P 346.236 n 2,6-DIAMINOPURINE NUCLEOTIDE DNA linking Ca 2 40.078 CALCIUM ION non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Na 1 22.990 SODIUM ION non-polymer Y 1 N N Y 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C N 7 N N Y 8 N N Y 9 N N Y 10 N N N 11 N N N 12 N P N 13 N O N 14 N O N 15 N O N 16 N C N 17 R C N 18 N O N 19 R C N 20 N C N 21 S C N 22 N O N 23 N O N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N CA N 40 N O N 41 N P N 42 N O N 43 N O N 44 N O N 45 N C N 46 R C N 47 N O N 48 S C N 49 N O N 50 N C N 51 R C Y 52 N N Y 53 N C Y 54 N N Y 55 N C Y 56 N C N 57 N N Y 58 N N Y 59 N C Y 60 N N Y 61 N C N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N O N 77 N P N 78 N O N 79 N O N 80 N O N 81 N C N 82 R C N 83 N O N 84 S C N 85 N O N 86 N C N 87 R C N 88 N N N 89 N C N 90 N O N 91 N N N 92 N C N 93 N N N 94 N C N 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 N C N 121 R C Y 122 N N Y 123 N C Y 124 N N Y 125 N C N 126 N C N 127 N O N 128 N N N 129 N C N 130 N N N 131 N N Y 132 N C N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N O N 148 N P N 149 N O N 150 N O N 151 N O N 152 N C N 153 R C N 154 N O N 155 S C N 156 N O N 157 N C N 158 R C N 159 N N N 160 N C N 161 N O N 162 N N N 163 N C N 164 N O N 165 N C N 166 N C N 167 N C N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N O N 184 N H N 185 N H N 186 N NA Y 1 N sing Y 2 N doub N 3 N sing Y 4 N doub Y 5 N doub Y 6 N sing Y 7 N sing Y 8 N sing Y 9 N sing N 10 N sing Y 11 N sing Y 12 N doub N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N doub N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N doub N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing Y 64 N sing Y 65 N sing Y 66 N doub N 67 N sing Y 68 N sing Y 69 N sing Y 70 N doub N 71 N sing Y 72 N doub N 73 N sing N 74 N sing Y 75 N sing Y 76 N doub N 77 N sing Y 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing Y 137 N sing Y 138 N sing Y 139 N doub N 140 N sing Y 141 N sing N 142 N sing Y 143 N doub N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing US Biochemistry BICHAW 0033 0006-2960 43 9813 9822 10.1021/bi049461d 15274635 Influence of minor groove substituents on the structure of DNA holliday junctions. 2004 10.2210/pdb1s1k/pdb pdb_00001s1k 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 103.0 1 BENT CONICAL SI-MIRROR (RH COATING) CCD 2002-01-08 ADSC QUANTUM 4 BENT GE(111) MONOCHROMATOR SINGLE WAVELENGTH M x-ray 1 0.9 1.0 14-BM-C APS 0.9 SYNCHROTRON APS BEAMLINE 14-BM-C 3060.019 5'-D(*CP*CP*(1AP)P*GP*TP*AP*CP*TP*GP*G)-3' 1 syn polymer 40.078 CALCIUM ION 2 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 40 nat water no yes (DC)(DC)(1AP)(DG)(DT)(DA)(DC)(DT)(DG)(DG) CCAGTACTGG A polydeoxyribonucleotide n n n n n n n n n n 1 2.02 38.5 VAPOR DIFFUSION, SITTING DROP 7.50 5mM TRIS(HCl), 23mM CaAcetate, 16% MPD, .6mM DNA against 28% MPD at RT, pH 7.50, VAPOR DIFFUSION, SITTING DROP TRIS(HCl) 1 CaAcetate 1 16% MPD 1 DNA 1 water 28% MPD TRIS(HCl) 0.319 1 19 A 1 A 10 -3.917 A_DC1:DG10_A 1 -0.481 0.772 -0.044 -0.507 -3.987 1 19 A 2 A 9 -5.656 A_DC2:DG9_A 2 -8.813 0.286 0.246 -0.077 -4.157 A 3 A 8 -2.518 A_1AP3:DT8_A 3 -5.707 0.131 -0.239 0.006 -1.850 1 19 A 4 A 7 -3.866 A_DG4:DC7_A 4 -11.463 -0.331 0.212 -0.017 -1.504 1 20 A 5 A 6 -2.231 A_DT5:DA6_A 5 -11.056 -0.171 0.330 -0.178 1.504 1 20 A 6 A 5 -2.231 A_DA6:DT5_A 6 -11.056 0.171 0.330 -0.178 1.850 1 19 A 7 A 4 -3.866 A_DC7:DG4_A 7 -11.463 0.331 0.212 -0.017 4.157 A 8 A 3 -2.518 A_DT8:1AP3_A 8 -5.707 -0.131 -0.239 0.006 3.987 1 19 A 9 A 2 -5.656 A_DG9:DC2_A 9 -8.813 -0.286 0.246 -0.077 -0.319 1 19 A 10 A 1 -3.917 A_DG10:DC1_A 10 -0.481 -0.772 -0.044 -0.507 3.317 34.087 A A 1 2 13.012 A A 10 9 3.403 7.566 -0.392 0.060 AA_DC1DC2:DG9DG10_AA 1 1.394 -2.398 33.233 -1.148 0.900 3.491 40.064 A A 2 3 12.005 A A 9 8 3.398 8.156 0.231 0.780 AA_DC21AP3:DT8DG9_AA 2 4.349 -6.402 39.026 0.143 0.193 3.126 32.028 A A 3 4 5.242 A A 8 7 3.243 2.881 0.533 -0.116 AA_1AP3DG4:DC7DT8_AA 3 -4.180 7.607 31.633 -0.719 -1.705 3.248 29.298 A A 4 5 6.090 A A 7 6 3.351 3.072 -0.021 -0.755 AA_DG4DT5:DA6DC7_AA 4 -2.195 4.350 29.059 -2.164 -0.439 3.262 45.713 A A 5 6 3.650 A A 6 5 3.246 2.834 0.000 0.368 AA_DT5DA6:DT5DA6_AA 5 0.000 0.000 45.629 0.228 0.000 3.248 29.298 A A 6 7 6.090 A A 5 4 3.351 3.072 0.021 -0.755 AA_DA6DC7:DG4DT5_AA 6 2.195 -4.350 29.059 -2.164 0.439 3.126 32.028 A A 7 8 5.242 A A 4 3 3.243 2.881 -0.533 -0.116 AA_DC7DT8:1AP3DG4_AA 7 4.180 -7.607 31.633 -0.719 1.705 3.491 40.064 A A 8 9 12.005 A A 3 2 3.398 8.156 -0.231 0.780 AA_DT8DG9:DC21AP3_AA 8 -4.349 6.402 39.026 0.143 -0.193 3.317 34.087 A A 9 10 13.012 A A 2 1 3.403 7.566 0.392 0.060 AA_DG9DG10:DC1DC2_AA 9 -1.394 2.398 33.233 -1.148 -0.900 atom_site chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Atomic model Data collection Database references Derived calculations Refinement description 1 0 2004-08-31 1 1 2008-04-29 1 2 2011-07-13 2 0 2023-08-23 _atom_site.occupancy _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Unmodified ACT strand BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). THE FULL BIOLOGICAL UNIT CONSISTS OF TWO STRANDS FORMING A B-DNA DUPLEX STRUCTURE. SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). RCSB Y RCSB 2004-01-06 REL REL CA CALCIUM ION NA SODIUM ION HOH water 1P4Z PDB experimental model CA 11 2 CA CA 11 A CA 14 2 CA CA 14 A NA 15 3 NA NA 15 A WAT 12 4 HOH HOH 12 A WAT 13 4 HOH HOH 13 A WAT 16 4 HOH HOH 16 A WAT 17 4 HOH HOH 17 A WAT 18 4 HOH HOH 18 A WAT 19 4 HOH HOH 19 A WAT 20 4 HOH HOH 20 A WAT 21 4 HOH HOH 21 A WAT 22 4 HOH HOH 22 A WAT 23 4 HOH HOH 23 A WAT 24 4 HOH HOH 24 A WAT 25 4 HOH HOH 25 A WAT 26 4 HOH HOH 26 A WAT 27 4 HOH HOH 27 A WAT 28 4 HOH HOH 28 A WAT 29 4 HOH HOH 29 A WAT 30 4 HOH HOH 30 A WAT 31 4 HOH HOH 31 A WAT 32 4 HOH HOH 32 A WAT 33 4 HOH HOH 33 A WAT 34 4 HOH HOH 34 A WAT 35 4 HOH HOH 35 A WAT 36 4 HOH HOH 36 A WAT 37 4 HOH HOH 37 A WAT 38 4 HOH HOH 38 A WAT 41 4 HOH HOH 41 A WAT 42 4 HOH HOH 42 A WAT 43 4 HOH HOH 43 A WAT 44 4 HOH HOH 44 A WAT 45 4 HOH HOH 45 A WAT 46 4 HOH HOH 46 A WAT 47 4 HOH HOH 47 A WAT 48 4 HOH HOH 48 A WAT 49 4 HOH HOH 49 A WAT 50 4 HOH HOH 50 A WAT 51 4 HOH HOH 51 A WAT 52 4 HOH HOH 52 A WAT 53 4 HOH HOH 53 A WAT 54 4 HOH HOH 54 A WAT 55 4 HOH HOH 55 A C 1 n 1 DC 1 A C 2 n 2 DC 2 A DAP 3 n 3 1AP 3 A G 4 n 4 DG 4 A T 5 n 5 DT 5 A A 6 n 6 DA 6 A C 7 n 7 DC 7 A T 8 n 8 DT 8 A G 9 n 9 DG 9 A G 10 n 10 DG 10 A author_defined_assembly 2 dimeric A DT 5 A OP1 DT 5 1_555 A NA 15 D NA NA 1_555 A HOH 31 E O HOH 1_555 101.0 A DT 5 A OP1 DT 5 1_555 A NA 15 D NA NA 1_555 A HOH 36 E O HOH 1_555 57.7 A HOH 31 E O HOH 1_555 A NA 15 D NA NA 1_555 A HOH 36 E O HOH 1_555 145.2 A DC 7 A OP2 DC 7 1_555 A CA 14 C CA CA 1_555 A DC 7 A OP2 DC 7 8_555 169.6 A DC 7 A OP2 DC 7 1_555 A CA 14 C CA CA 1_555 A HOH 23 E O HOH 8_555 105.6 A DC 7 A OP2 DC 7 8_555 A CA 14 C CA CA 1_555 A HOH 23 E O HOH 8_555 72.0 A DC 7 A OP2 DC 7 1_555 A CA 14 C CA CA 1_555 A HOH 28 E O HOH 1_555 81.5 A DC 7 A OP2 DC 7 8_555 A CA 14 C CA CA 1_555 A HOH 28 E O HOH 1_555 104.3 A HOH 23 E O HOH 8_555 A CA 14 C CA CA 1_555 A HOH 28 E O HOH 1_555 159.0 A DC 7 A OP2 DC 7 1_555 A CA 14 C CA CA 1_555 A HOH 28 E O HOH 8_555 102.5 A DC 7 A OP2 DC 7 8_555 A CA 14 C CA CA 1_555 A HOH 28 E O HOH 8_555 84.2 A HOH 23 E O HOH 8_555 A CA 14 C CA CA 1_555 A HOH 28 E O HOH 8_555 52.3 A HOH 28 E O HOH 1_555 A CA 14 C CA CA 1_555 A HOH 28 E O HOH 8_555 107.2 A HOH 20 E O HOH 1_555 A CA 11 B CA CA 1_555 A HOH 20 E O HOH 8_555 107.8 A HOH 20 E O HOH 1_555 A CA 11 B CA CA 1_555 A HOH 45 E O HOH 1_555 125.9 A HOH 20 E O HOH 8_555 A CA 11 B CA CA 1_555 A HOH 45 E O HOH 1_555 107.2 A HOH 20 E O HOH 1_555 A CA 11 B CA CA 1_555 A HOH 45 E O HOH 8_555 107.6 A HOH 20 E O HOH 8_555 A CA 11 B CA CA 1_555 A HOH 45 E O HOH 8_555 124.7 A HOH 45 E O HOH 1_555 A CA 11 B CA CA 1_555 A HOH 45 E O HOH 8_555 83.8 A 1AP 3 2,6-DIAMINOPURINE NUCLEOTIDE A 1AP 3 DA 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_545 x,x-y-1,-z+1/6 crystal symmetry operation 16.4785000000 -28.5415992325 14.7593333333 1 A CA 11 B CA 1 A CA 14 C CA 1 A HOH 32 E HOH 1 A A O4' O DC HOH 2 48 2.03 1 A A OP2 O DA HOH 6 37 2.04 1 A A O2 O DT HOH 5 49 2.10 1 A A OP1 O DG HOH 9 16 2.11 1 A A O O HOH HOH 35 41 2.11 1 A DA 6 0.086 SIDE CHAIN 1 A DC 7 0.128 SIDE CHAIN 1 A DG 9 0.083 SIDE CHAIN 1 A DG 10 0.120 SIDE CHAIN 1 3.87 0.30 108.30 112.17 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 5.57 0.70 119.20 124.77 A A A N1 C2 N3 DC DC DC 1 1 1 N 1 -3.19 0.40 121.90 118.71 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 -4.88 0.60 118.90 114.02 A A A N1 C2 O2 DC DC DC 1 1 1 N 1 15.42 1.10 110.50 125.92 A A A O3' P OP2 DC DC DC 1 2 2 Y 1 -8.26 0.90 105.70 97.44 A A A O5' P OP2 DC DC DC 2 2 2 N 1 -11.85 1.80 114.10 102.25 A A A C5' C4' C3' DC DC DC 2 2 2 N 1 -7.99 1.00 110.10 102.11 A A A C1' O4' C4' DC DC DC 2 2 2 N 1 7.38 0.30 108.30 115.68 A A A O4' C1' N1 DC DC DC 2 2 2 N 1 26.39 1.10 110.50 136.89 A A A O3' P OP2 1AP DG DG 3 4 4 Y 1 -28.68 2.20 105.20 76.52 A A A O3' P OP1 1AP DG DG 3 4 4 Y 1 3.70 0.60 106.00 109.70 A A A O4' C4' C3' DG DG DG 4 4 4 N 1 2.11 0.30 108.30 110.41 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 -3.91 0.60 123.90 119.99 A A A N1 C2 N3 DG DG DG 4 4 4 N 1 3.28 0.50 111.90 115.18 A A A C2 N3 C4 DG DG DG 4 4 4 N 1 -3.16 0.40 110.80 107.64 A A A C4 C5 N7 DG DG DG 4 4 4 N 1 3.19 0.50 104.30 107.49 A A A C5 N7 C8 DG DG DG 4 4 4 N 1 7.76 1.10 110.50 118.26 A A A O3' P OP2 DG DT DT 4 5 5 Y 1 4.85 0.60 106.00 110.85 A A A O4' C4' C3' DT DT DT 5 5 5 N 1 -26.83 2.50 109.40 82.57 A A A C2' C3' O3' DT DT DT 5 5 5 N 1 2.35 0.30 108.30 110.65 A A A O4' C1' N1 DT DT DT 5 5 5 N 1 4.81 0.60 127.20 132.01 A A A C2 N3 C4 DT DT DT 5 5 5 N 1 -14.91 2.20 105.20 90.29 A A A O3' P OP1 DT DA DA 5 6 6 Y 1 -7.44 0.90 105.70 98.26 A A A O5' P OP1 DA DA DA 6 6 6 N 1 11.52 1.20 110.70 122.22 A A A O5' P OP2 DA DA DA 6 6 6 N 1 7.38 0.70 110.30 117.68 A A A C1' O4' C4' DA DA DA 6 6 6 N 1 -4.97 0.60 118.60 113.63 A A A C6 N1 C2 DA DA DA 6 6 6 N 1 4.36 0.50 129.30 133.66 A A A N1 C2 N3 DA DA DA 6 6 6 N 1 4.89 0.50 110.60 115.49 A A A C2 N3 C4 DA DA DA 6 6 6 N 1 -4.49 0.70 126.80 122.31 A A A N3 C4 C5 DA DA DA 6 6 6 N 1 3.09 0.50 113.80 116.89 A A A N7 C8 N9 DA DA DA 6 6 6 N 1 13.59 1.10 110.50 124.09 A A A O3' P OP2 DA DC DC 6 7 7 Y 1 -26.91 2.20 105.20 78.29 A A A O3' P OP1 DA DC DC 6 7 7 Y 1 18.58 1.20 110.70 129.28 A A A O5' P OP1 DC DC DC 7 7 7 N 1 -7.37 0.90 105.70 98.33 A A A O5' P OP2 DC DC DC 7 7 7 N 1 -22.57 1.90 109.30 86.73 A A A C5' C4' O4' DC DC DC 7 7 7 N 1 -5.64 0.50 119.90 114.26 A A A C2 N3 C4 DC DC DC 7 7 7 N 1 5.21 0.70 110.30 115.51 A A A C1' O4' C4' DT DT DT 8 8 8 N 1 19.19 1.90 104.00 123.19 A A A O3' P O5' DT DG DG 8 9 9 Y 1 12.99 1.10 110.50 123.49 A A A O3' P OP2 DT DG DG 8 9 9 Y 1 -22.13 2.20 105.20 83.07 A A A O3' P OP1 DT DG DG 8 9 9 Y 1 -8.59 0.90 105.70 97.11 A A A O5' P OP2 DG DG DG 9 9 9 N 1 -4.34 0.40 104.50 100.16 A A A O4' C4' C3' DG DG DG 9 9 9 N 1 -12.39 1.90 109.30 96.91 A A A C5' C4' O4' DG DG DG 9 9 9 N 1 -8.16 0.80 102.40 94.24 A A A C3' C2' C1' DG DG DG 9 9 9 N 1 5.51 0.50 106.80 112.31 A A A O4' C1' C2' DG DG DG 9 9 9 N 1 -4.30 0.60 130.40 126.10 A A A C6 C5 N7 DG DG DG 9 9 9 N 1 13.97 1.90 104.00 117.97 A A A O3' P O5' DG DG DG 9 10 10 Y 1 -14.14 0.90 105.70 91.56 A A A O5' P OP1 DG DG DG 10 10 10 N 1 12.00 1.10 109.80 121.80 A A A C5' C4' O4' DG DG DG 10 10 10 N 1 -6.07 1.00 110.10 104.03 A A A C1' O4' C4' DG DG DG 10 10 10 N 1 -24.32 2.50 109.70 85.38 A A A C4' C3' O3' DG DG DG 10 10 10 N 1 2.02 0.30 108.30 110.32 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 7.01 0.60 125.10 132.11 A A A C6 N1 C2 DG DG DG 10 10 10 N 1 -3.28 0.50 111.90 108.62 A A A C2 N3 C4 DG DG DG 10 10 10 N 1 A A C3' C2' DC DC 1 1 -0.053 0.008 1.516 1.463 N 1 A A C2' C1' DC DC 1 1 0.087 0.010 1.519 1.606 N 1 A A C4 C5 DC DC 1 1 0.053 0.008 1.425 1.478 N 1 A A C5 C6 DC DC 1 1 0.125 0.008 1.339 1.464 N 1 A A P OP2 DC DC 2 2 0.115 0.017 1.485 1.600 N 1 A A C3' C2' DC DC 2 2 -0.048 0.008 1.516 1.468 N 1 A A C4 N4 DC DC 2 2 0.106 0.009 1.335 1.441 N 1 A A N1 C2 DC DC 2 2 0.083 0.010 1.397 1.480 N 1 A A C5 C6 DC DC 2 2 -0.051 0.008 1.339 1.288 N 1 A A P O5' DG DG 4 4 0.070 0.010 1.593 1.663 N 1 A A O3' C3' DG DG 4 4 -0.121 0.006 1.419 1.298 N 1 A A C2 N3 DG DG 4 4 0.059 0.008 1.323 1.382 N 1 A A C4 C5 DG DG 4 4 -0.083 0.007 1.379 1.296 N 1 A A C8 N9 DG DG 4 4 -0.095 0.007 1.374 1.279 N 1 A A O3' P DG DT 4 5 -0.081 0.012 1.607 1.526 Y 1 A A C2' C1' DT DT 5 5 0.115 0.010 1.519 1.634 N 1 A A O3' C3' DT DT 5 5 -0.164 0.006 1.419 1.255 N 1 A A C1' N1 DT DT 5 5 0.106 0.013 1.488 1.594 N 1 A A C2 N3 DT DT 5 5 -0.077 0.008 1.373 1.296 N 1 A A C4 C5 DT DT 5 5 -0.102 0.009 1.445 1.343 N 1 A A C6 N1 DT DT 5 5 0.051 0.007 1.378 1.429 N 1 A A C2 O2 DT DT 5 5 0.090 0.008 1.220 1.310 N 1 A A C4 O4 DT DT 5 5 -0.074 0.009 1.228 1.154 N 1 A A C5 C7 DT DT 5 5 -0.043 0.006 1.496 1.453 N 1 A A P OP1 DA DA 6 6 -0.199 0.017 1.485 1.286 N 1 A A P OP2 DA DA 6 6 0.135 0.017 1.485 1.620 N 1 A A P O5' DA DA 6 6 -0.061 0.010 1.593 1.532 N 1 A A C2 N3 DA DA 6 6 -0.080 0.009 1.331 1.251 N 1 A A N3 C4 DA DA 6 6 -0.038 0.006 1.344 1.306 N 1 A A C5 C6 DA DA 6 6 0.124 0.009 1.406 1.530 N 1 A A C6 N6 DA DA 6 6 -0.162 0.008 1.335 1.173 N 1 A A P O5' DC DC 7 7 -0.109 0.010 1.593 1.484 N 1 A A C2 O2 DC DC 7 7 -0.060 0.009 1.240 1.180 N 1 A A C4 N4 DC DC 7 7 -0.088 0.009 1.335 1.247 N 1 A A N1 C6 DC DC 7 7 -0.073 0.006 1.367 1.294 N 1 A A O3' P DC DT 7 8 0.132 0.012 1.607 1.739 Y 1 A A P OP2 DT DT 8 8 0.176 0.017 1.485 1.661 N 1 A A C2' C1' DT DT 8 8 -0.110 0.010 1.518 1.408 N 1 A A O4' C4' DT DT 8 8 -0.115 0.010 1.446 1.331 N 1 A A O3' C3' DT DT 8 8 -0.040 0.006 1.419 1.379 N 1 A A C5 C6 DT DT 8 8 -0.079 0.007 1.339 1.260 N 1 A A C2 O2 DT DT 8 8 -0.119 0.008 1.220 1.101 N 1 A A C5 C7 DT DT 8 8 -0.092 0.006 1.496 1.404 N 1 A A P OP1 DG DG 9 9 -0.128 0.017 1.485 1.357 N 1 A A P OP2 DG DG 9 9 -0.143 0.017 1.485 1.342 N 1 A A C2 N3 DG DG 9 9 0.091 0.008 1.323 1.414 N 1 A A N3 C4 DG DG 9 9 -0.068 0.007 1.350 1.282 N 1 A A C6 N1 DG DG 9 9 -0.056 0.007 1.391 1.335 N 1 A A C2 N2 DG DG 9 9 0.149 0.010 1.341 1.490 N 1 A A C6 O6 DG DG 9 9 -0.091 0.009 1.237 1.146 N 1 A A P O5' DG DG 10 10 -0.094 0.010 1.593 1.499 N 1 A A O4' C1' DG DG 10 10 0.076 0.011 1.420 1.496 N 1 A A O3' C3' DG DG 10 10 -0.112 0.006 1.419 1.307 N 1 A A N3 C4 DG DG 10 10 0.144 0.007 1.350 1.494 N 1 A A C5 C6 DG DG 10 10 -0.072 0.010 1.419 1.347 N 1 A A C6 N1 DG DG 10 10 -0.060 0.007 1.391 1.331 N 1 A A C5 N7 DG DG 10 10 -0.045 0.006 1.388 1.343 N 1 A A N9 C4 DG DG 10 10 0.049 0.008 1.375 1.424 N 1 A A C2 N2 DG DG 10 10 0.084 0.010 1.341 1.425 N 1 A A O O HOH HOH 37 37 1.34 1_555 8_555 14.0 3.22 3.51 0.00 3.22 0.00 -6.45 0.258 0.017 0.232 0.253 0.232 1.90 17.49 228 2528 2413 9.400 93.9 RANDOM 29235.77 29235.77 0.0 1 RESTRAINED THROUGHOUT 0.000 0 MOLECULAR REPLACEMENT 1P4Z CNS 0.26 0.25 5.00 0.33 0.26 1.90 17.49 40 246 3 203 0 0.067 6.20 21.60 5.46 0.4 0.069 0.308 2.02 34 287 6 10.60 80.70 8.80 1.850 17.50 1S1K 2528 2528 0.000 0.056 1 96.3 0.245 1.85 1.92 4.980 72.2 data reduction DENZO data scaling SCALEPACK phasing EPMR refinement CNS 1.0 INFLUENCE OF GROOVE INTERACTIONS ON DNA HOLLIDAY JUNCTION FORMATION 1 N N 2 N N 2 N N 3 N N 4 N N covale 1.626 both A DC 2 A O3' DC 2 1_555 A 1AP 3 A P 1AP 3 1_555 covale 1.634 one A 1AP 3 A O3' 1AP 3 1_555 A DG 4 A P DG 4 1_555 covale 1.935 none A 1AP 3 A O3' 1AP 3 1_555 A DG 4 A OP1 DG 4 1_555 metalc 2.502 A DT 5 A OP1 DT 5 1_555 A NA 15 D NA NA 1_555 metalc 2.539 A DC 7 A OP2 DC 7 1_555 A CA 14 C CA CA 1_555 metalc 2.448 A DC 7 A OP2 DC 7 8_555 A CA 14 C CA CA 1_555 metalc 3.150 A CA 11 B CA CA 1_555 A HOH 20 E O HOH 1_555 metalc 3.173 A CA 11 B CA CA 1_555 A HOH 20 E O HOH 8_555 metalc 2.830 A CA 11 B CA CA 1_555 A HOH 45 E O HOH 1_555 metalc 2.840 A CA 11 B CA CA 1_555 A HOH 45 E O HOH 8_555 metalc 3.355 A CA 14 C CA CA 1_555 A HOH 23 E O HOH 8_555 metalc 2.375 A CA 14 C CA CA 1_555 A HOH 28 E O HOH 1_555 metalc 2.342 A CA 14 C CA CA 1_555 A HOH 28 E O HOH 8_555 metalc 1.795 A NA 15 D NA NA 1_555 A HOH 31 E O HOH 1_555 metalc 2.731 A NA 15 D NA NA 1_555 A HOH 36 E O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 A DG 10 A N1 DG 10 12_545 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 A DG 10 A O6 DG 10 12_545 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 A DG 10 A N2 DG 10 12_545 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 A DG 9 A N1 DG 9 12_545 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 A DG 9 A O6 DG 9 12_545 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 A DG 9 A N2 DG 9 12_545 hydrog 1AP-DT MISPAIR A 1AP 3 A N2 1AP 3 1_555 A DT 8 A O2 DT 8 12_545 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 A DC 7 A N3 DC 7 12_545 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 A DC 7 A O2 DC 7 12_545 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 A DC 7 A N4 DC 7 12_545 hydrog WATSON-CRICK A DT 5 A N3 DT 5 1_555 A DA 6 A N1 DA 6 12_545 hydrog WATSON-CRICK A DT 5 A O4 DT 5 1_555 A DA 6 A N6 DA 6 12_545 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 A DT 5 A N3 DT 5 12_545 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 A DT 5 A O4 DT 5 12_545 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 A DG 4 A N1 DG 4 12_545 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 A DG 4 A O6 DG 4 12_545 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 A DG 4 A N2 DG 4 12_545 hydrog DT-1AP MISPAIR A DT 8 A O2 DT 8 1_555 A 1AP 3 A N2 1AP 3 12_545 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 A DC 2 A N3 DC 2 12_545 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 A DC 2 A O2 DC 2 12_545 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 A DC 2 A N4 DC 2 12_545 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 A DC 1 A N3 DC 1 12_545 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 A DC 1 A O2 DC 1 12_545 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 A DC 1 A N4 DC 1 12_545 DNA B-DNA, DOUBLE HELIX, 2, 6-Diaminopurine, Minor groove interactions, DNA 1S1K PDB 1 1S1K 1 10 1S1K 1 10 1S1K A 1 1 10 BINDING SITE FOR RESIDUE CA A 11 A CA 11 Software 2 BINDING SITE FOR RESIDUE CA A 14 A CA 14 Software 4 BINDING SITE FOR RESIDUE NA A 15 A NA 15 Software 3 A HOH 45 E HOH 2 1_555 A HOH 45 E HOH 2 8_555 A DC 7 A DC 7 4 1_555 A DC 7 A DC 7 4 8_555 A HOH 28 E HOH 4 1_555 A HOH 28 E HOH 4 8_555 A DT 5 A DT 5 3 1_555 A HOH 31 E HOH 3 1_555 A HOH 36 E HOH 3 1_555 178 P 61 2 2