0.011944 0.000000 0.000000 0.000000 0.011944 0.000000 0.000000 0.000000 0.006690 0.00000 0.00000 0.00000 Chen, S. Busso, D. Yakunin, A.F. Kuznetsova, E. Proudfoot, M. Jancrick, J. Kim, R. Kim, S.-H. Berkeley Structural Genomics Center (BSGC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 83.722 83.722 149.472 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking UNKNOWN ATOM OR ION non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N P N 274 N O N 275 N O N 276 N O N 277 N O N 278 N N N 279 S C N 280 N C N 281 N O N 282 N C N 283 N C N 284 N C N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C N 300 N O N 301 N O N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N N N 310 S C N 311 N C N 312 N O N 313 R C N 314 N O N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N N Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C N 382 N C N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 279 31854 31862 10.1074/jbc.M401059200 15128743 Structural and functional characterization of a novel phosphodiesterase from Methanococcus jannaschii 2004 10.2210/pdb1s3l/pdb pdb_00001s3l 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 100 1 1 CCD 2002-11-21 ADSC QUANTUM 210 CCD 2002-11-26 ADSC QUANTUM 210 SINGLE WAVELENGTH M x-ray 1 M x-ray 1 0.9790 1.0 1.0000 1.0 5.0.2 ALS 0.9790 SYNCHROTRON ALS BEAMLINE 5.0.2 5.0.1 ALS 1.0000 SYNCHROTRON ALS BEAMLINE 5.0.1 21918.621 Hypothetical protein MJ0936 2 man polymer UNKNOWN ATOM OR ION 2 syn non-polymer 94.971 PHOSPHATE ION 1 syn non-polymer 18.015 water 45 nat water no no MGSSHHHHHHDYDIPTTENLYFQGHMKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIA TYGNNDGERCKLKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVI NPGECCGYLTGIPTIGILDTEKKEYREIVL MGSSHHHHHHDYDIPTTENLYFQGHMKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIA TYGNNDGERCKLKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVI NPGECCGYLTGIPTIGILDTEKKEYREIVL A,B BSGCAIR30314 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Methanocaldococcus Escherichia sample 2190 Methanocaldococcus jannaschii 562 Escherichia coli BL21/DE3/PSJS1244 PLASMID PSKB3 2 2.99 58.82 VAPOR DIFFUSION, HANGING DROP 7.5 0.7M AMMONIUM SULFATE, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 Berkeley Structural Genomics Center BSGC PSI, Protein Structure Initiative chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations 1 0 2004-08-10 1 1 2008-04-29 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2004-01-13 REL REL UNX UNKNOWN ATOM OR ION PO4 PHOSPHATE ION HOH water UNX 503 2 UNX UNX 503 A PO4 600 3 PO4 PO4 600 B UNX 502 2 UNX UNX 502 B TIP 601 4 HOH HOH 601 A TIP 602 4 HOH HOH 602 A TIP 603 4 HOH HOH 603 A TIP 607 4 HOH HOH 607 A TIP 608 4 HOH HOH 608 A TIP 610 4 HOH HOH 610 A TIP 611 4 HOH HOH 611 A TIP 612 4 HOH HOH 612 A TIP 616 4 HOH HOH 616 A TIP 617 4 HOH HOH 617 A TIP 618 4 HOH HOH 618 A TIP 619 4 HOH HOH 619 A TIP 620 4 HOH HOH 620 A TIP 621 4 HOH HOH 621 A TIP 628 4 HOH HOH 628 A TIP 631 4 HOH HOH 631 A TIP 632 4 HOH HOH 632 A TIP 633 4 HOH HOH 633 A TIP 634 4 HOH HOH 634 A TIP 636 4 HOH HOH 636 A TIP 638 4 HOH HOH 638 A TIP 643 4 HOH HOH 643 A TIP 645 4 HOH HOH 645 A TIP 604 4 HOH HOH 604 B TIP 605 4 HOH HOH 605 B TIP 606 4 HOH HOH 606 B TIP 609 4 HOH HOH 609 B TIP 613 4 HOH HOH 613 B TIP 614 4 HOH HOH 614 B TIP 615 4 HOH HOH 615 B TIP 622 4 HOH HOH 622 B TIP 623 4 HOH HOH 623 B TIP 624 4 HOH HOH 624 B TIP 625 4 HOH HOH 625 B TIP 626 4 HOH HOH 626 B TIP 627 4 HOH HOH 627 B TIP 629 4 HOH HOH 629 B TIP 630 4 HOH HOH 630 B TIP 635 4 HOH HOH 635 B TIP 637 4 HOH HOH 637 B TIP 639 4 HOH HOH 639 B TIP 640 4 HOH HOH 640 B TIP 641 4 HOH HOH 641 B TIP 642 4 HOH HOH 642 B TIP 644 4 HOH HOH 644 B n 1 -24 A n 2 -23 A n 3 -22 A n 4 -21 A n 5 -20 A n 6 -19 A n 7 -18 A n 8 -17 A n 9 -16 A n 10 -15 A n 11 -14 A n 12 -13 A n 13 -12 A n 14 -11 A n 15 -10 A n 16 -9 A n 17 -8 A n 18 -7 A n 19 -6 A n 20 -5 A n 21 -4 A n 22 -3 A n 23 -2 A n 24 -1 A n 25 0 A MET 1 n 26 MET 1 A LYS 2 n 27 LYS 2 A ILE 3 n 28 ILE 3 A GLY 4 n 29 GLY 4 A ILE 5 n 30 ILE 5 A MET 6 n 31 MET 6 A SER 7 n 32 SER 7 A ASP 8 n 33 ASP 8 A THR 9 n 34 THR 9 A HIS 10 n 35 HIS 10 A ASP 11 n 36 ASP 11 A HIS 12 n 37 HIS 12 A LEU 13 n 38 LEU 13 A PRO 14 n 39 PRO 14 A ASN 15 n 40 ASN 15 A ILE 16 n 41 ILE 16 A ARG 17 n 42 ARG 17 A LYS 18 n 43 LYS 18 A ALA 19 n 44 ALA 19 A ILE 20 n 45 ILE 20 A GLU 21 n 46 GLU 21 A ILE 22 n 47 ILE 22 A PHE 23 n 48 PHE 23 A ASN 24 n 49 ASN 24 A ASP 25 n 50 ASP 25 A GLU 26 n 51 GLU 26 A ASN 27 n 52 ASN 27 A VAL 28 n 53 VAL 28 A GLU 29 n 54 GLU 29 A THR 30 n 55 THR 30 A VAL 31 n 56 VAL 31 A ILE 32 n 57 ILE 32 A HIS 33 n 58 HIS 33 A CYS 34 n 59 CYS 34 A GLY 35 n 60 GLY 35 A ASP 36 n 61 ASP 36 A PHE 37 n 62 PHE 37 A VAL 38 n 63 VAL 38 A SER 39 n 64 SER 39 A LEU 40 n 65 LEU 40 A PHE 41 n 66 PHE 41 A VAL 42 n 67 VAL 42 A ILE 43 n 68 ILE 43 A LYS 44 n 69 LYS 44 A GLU 45 n 70 GLU 45 A PHE 46 n 71 PHE 46 A GLU 47 n 72 GLU 47 A ASN 48 n 73 ASN 48 A LEU 49 n 74 LEU 49 A ASN 50 n 75 ASN 50 A ALA 51 n 76 ALA 51 A ASN 52 n 77 ASN 52 A ILE 53 n 78 ILE 53 A ILE 54 n 79 ILE 54 A ALA 55 n 80 ALA 55 A THR 56 n 81 THR 56 A TYR 57 n 82 TYR 57 A GLY 58 n 83 GLY 58 A ASN 59 n 84 ASN 59 A ASN 60 n 85 ASN 60 A ASP 61 n 86 ASP 61 A GLY 62 n 87 GLY 62 A GLU 63 n 88 GLU 63 A ARG 64 n 89 ARG 64 A CYS 65 n 90 CYS 65 A LYS 66 n 91 LYS 66 A LEU 67 n 92 LEU 67 A LYS 68 n 93 LYS 68 A GLU 69 n 94 GLU 69 A TRP 70 n 95 TRP 70 A LEU 71 n 96 LEU 71 A LYS 72 n 97 LYS 72 A ASP 73 n 98 ASP 73 A ILE 74 n 99 ILE 74 A ASN 75 n 100 ASN 75 A GLU 76 n 101 GLU 76 A GLU 77 n 102 GLU 77 A ASN 78 n 103 ASN 78 A ILE 79 n 104 ILE 79 A ILE 80 n 105 ILE 80 A ASP 81 n 106 ASP 81 A ASP 82 n 107 ASP 82 A PHE 83 n 108 PHE 83 A ILE 84 n 109 ILE 84 A SER 85 n 110 SER 85 A VAL 86 n 111 VAL 86 A GLU 87 n 112 GLU 87 A ILE 88 n 113 ILE 88 A ASP 89 n 114 ASP 89 A ASP 90 n 115 ASP 90 A LEU 91 n 116 LEU 91 A LYS 92 n 117 LYS 92 A PHE 93 n 118 PHE 93 A PHE 94 n 119 PHE 94 A ILE 95 n 120 ILE 95 A THR 96 n 121 THR 96 A HIS 97 n 122 HIS 97 A GLY 98 n 123 GLY 98 A HIS 99 n 124 HIS 99 A HIS 100 n 125 HIS 100 A GLN 101 n 126 GLN 101 A SER 102 n 127 SER 102 A VAL 103 n 128 VAL 103 A LEU 104 n 129 LEU 104 A GLU 105 n 130 GLU 105 A MET 106 n 131 MET 106 A ALA 107 n 132 ALA 107 A ILE 108 n 133 ILE 108 A LYS 109 n 134 LYS 109 A SER 110 n 135 SER 110 A GLY 111 n 136 GLY 111 A LEU 112 n 137 LEU 112 A TYR 113 n 138 TYR 113 A ASP 114 n 139 ASP 114 A VAL 115 n 140 VAL 115 A VAL 116 n 141 VAL 116 A ILE 117 n 142 ILE 117 A TYR 118 n 143 TYR 118 A GLY 119 n 144 GLY 119 A HIS 120 n 145 HIS 120 A THR 121 n 146 THR 121 A HIS 122 n 147 HIS 122 A GLU 123 n 148 GLU 123 A ARG 124 n 149 ARG 124 A VAL 125 n 150 VAL 125 A PHE 126 n 151 PHE 126 A GLU 127 n 152 GLU 127 A GLU 128 n 153 GLU 128 A VAL 129 n 154 VAL 129 A ASP 130 n 155 ASP 130 A ASP 131 n 156 ASP 131 A VAL 132 n 157 VAL 132 A LEU 133 n 158 LEU 133 A VAL 134 n 159 VAL 134 A ILE 135 n 160 ILE 135 A ASN 136 n 161 ASN 136 A PRO 137 n 162 PRO 137 A GLY 138 n 163 GLY 138 A GLU 139 n 164 GLU 139 A CYS 140 n 165 CYS 140 A CYS 141 n 166 CYS 141 A GLY 142 n 167 GLY 142 A TYR 143 n 168 TYR 143 A LEU 144 n 169 LEU 144 A THR 145 n 170 THR 145 A GLY 146 n 171 GLY 146 A ILE 147 n 172 ILE 147 A PRO 148 n 173 PRO 148 A THR 149 n 174 THR 149 A ILE 150 n 175 ILE 150 A GLY 151 n 176 GLY 151 A ILE 152 n 177 ILE 152 A LEU 153 n 178 LEU 153 A ASP 154 n 179 ASP 154 A THR 155 n 180 THR 155 A GLU 156 n 181 GLU 156 A LYS 157 n 182 LYS 157 A LYS 158 n 183 LYS 158 A GLU 159 n 184 GLU 159 A TYR 160 n 185 TYR 160 A ARG 161 n 186 ARG 161 A GLU 162 n 187 GLU 162 A ILE 163 n 188 ILE 163 A VAL 164 n 189 VAL 164 A LEU 165 n 190 LEU 165 A n 1 176 B n 2 177 B n 3 178 B n 4 179 B n 5 180 B n 6 181 B n 7 182 B n 8 183 B n 9 184 B n 10 185 B n 11 186 B n 12 187 B n 13 188 B n 14 189 B n 15 190 B n 16 191 B n 17 192 B n 18 193 B n 19 194 B n 20 195 B n 21 196 B n 22 197 B n 23 198 B n 24 199 B n 25 200 B MET 201 n 26 MET 201 B LYS 202 n 27 LYS 202 B ILE 203 n 28 ILE 203 B GLY 204 n 29 GLY 204 B ILE 205 n 30 ILE 205 B MET 206 n 31 MET 206 B SER 207 n 32 SER 207 B ASP 208 n 33 ASP 208 B THR 209 n 34 THR 209 B HIS 210 n 35 HIS 210 B ASP 211 n 36 ASP 211 B HIS 212 n 37 HIS 212 B LEU 213 n 38 LEU 213 B PRO 214 n 39 PRO 214 B ASN 215 n 40 ASN 215 B ILE 216 n 41 ILE 216 B ARG 217 n 42 ARG 217 B LYS 218 n 43 LYS 218 B ALA 219 n 44 ALA 219 B ILE 220 n 45 ILE 220 B GLU 221 n 46 GLU 221 B ILE 222 n 47 ILE 222 B PHE 223 n 48 PHE 223 B ASN 224 n 49 ASN 224 B ASP 225 n 50 ASP 225 B GLU 226 n 51 GLU 226 B ASN 227 n 52 ASN 227 B VAL 228 n 53 VAL 228 B GLU 229 n 54 GLU 229 B THR 230 n 55 THR 230 B VAL 231 n 56 VAL 231 B ILE 232 n 57 ILE 232 B HIS 233 n 58 HIS 233 B CYS 234 n 59 CYS 234 B GLY 235 n 60 GLY 235 B ASP 236 n 61 ASP 236 B PHE 237 n 62 PHE 237 B VAL 238 n 63 VAL 238 B SER 239 n 64 SER 239 B LEU 240 n 65 LEU 240 B PHE 241 n 66 PHE 241 B VAL 242 n 67 VAL 242 B ILE 243 n 68 ILE 243 B LYS 244 n 69 LYS 244 B GLU 245 n 70 GLU 245 B PHE 246 n 71 PHE 246 B GLU 247 n 72 GLU 247 B ASN 248 n 73 ASN 248 B LEU 249 n 74 LEU 249 B ASN 250 n 75 ASN 250 B ALA 251 n 76 ALA 251 B ASN 252 n 77 ASN 252 B ILE 253 n 78 ILE 253 B ILE 254 n 79 ILE 254 B ALA 255 n 80 ALA 255 B THR 256 n 81 THR 256 B TYR 257 n 82 TYR 257 B GLY 258 n 83 GLY 258 B ASN 259 n 84 ASN 259 B ASN 260 n 85 ASN 260 B ASP 261 n 86 ASP 261 B GLY 262 n 87 GLY 262 B GLU 263 n 88 GLU 263 B ARG 264 n 89 ARG 264 B CYS 265 n 90 CYS 265 B LYS 266 n 91 LYS 266 B LEU 267 n 92 LEU 267 B LYS 268 n 93 LYS 268 B GLU 269 n 94 GLU 269 B TRP 270 n 95 TRP 270 B LEU 271 n 96 LEU 271 B LYS 272 n 97 LYS 272 B ASP 273 n 98 ASP 273 B ILE 274 n 99 ILE 274 B ASN 275 n 100 ASN 275 B GLU 276 n 101 GLU 276 B GLU 277 n 102 GLU 277 B ASN 278 n 103 ASN 278 B ILE 279 n 104 ILE 279 B ILE 280 n 105 ILE 280 B ASP 281 n 106 ASP 281 B ASP 282 n 107 ASP 282 B PHE 283 n 108 PHE 283 B ILE 284 n 109 ILE 284 B SER 285 n 110 SER 285 B VAL 286 n 111 VAL 286 B GLU 287 n 112 GLU 287 B ILE 288 n 113 ILE 288 B ASP 289 n 114 ASP 289 B ASP 290 n 115 ASP 290 B LEU 291 n 116 LEU 291 B LYS 292 n 117 LYS 292 B PHE 293 n 118 PHE 293 B PHE 294 n 119 PHE 294 B ILE 295 n 120 ILE 295 B THR 296 n 121 THR 296 B HIS 297 n 122 HIS 297 B GLY 298 n 123 GLY 298 B HIS 299 n 124 HIS 299 B HIS 300 n 125 HIS 300 B GLN 301 n 126 GLN 301 B SER 302 n 127 SER 302 B VAL 303 n 128 VAL 303 B LEU 304 n 129 LEU 304 B GLU 305 n 130 GLU 305 B MET 306 n 131 MET 306 B ALA 307 n 132 ALA 307 B ILE 308 n 133 ILE 308 B LYS 309 n 134 LYS 309 B SER 310 n 135 SER 310 B GLY 311 n 136 GLY 311 B LEU 312 n 137 LEU 312 B TYR 313 n 138 TYR 313 B ASP 314 n 139 ASP 314 B VAL 315 n 140 VAL 315 B VAL 316 n 141 VAL 316 B ILE 317 n 142 ILE 317 B TYR 318 n 143 TYR 318 B GLY 319 n 144 GLY 319 B HIS 320 n 145 HIS 320 B THR 321 n 146 THR 321 B HIS 322 n 147 HIS 322 B GLU 323 n 148 GLU 323 B ARG 324 n 149 ARG 324 B VAL 325 n 150 VAL 325 B PHE 326 n 151 PHE 326 B GLU 327 n 152 GLU 327 B GLU 328 n 153 GLU 328 B VAL 329 n 154 VAL 329 B ASP 330 n 155 ASP 330 B ASP 331 n 156 ASP 331 B VAL 332 n 157 VAL 332 B LEU 333 n 158 LEU 333 B VAL 334 n 159 VAL 334 B ILE 335 n 160 ILE 335 B ASN 336 n 161 ASN 336 B PRO 337 n 162 PRO 337 B GLY 338 n 163 GLY 338 B GLU 339 n 164 GLU 339 B CYS 340 n 165 CYS 340 B CYS 341 n 166 CYS 341 B GLY 342 n 167 GLY 342 B TYR 343 n 168 TYR 343 B LEU 344 n 169 LEU 344 B THR 345 n 170 THR 345 B GLY 346 n 171 GLY 346 B ILE 347 n 172 ILE 347 B PRO 348 n 173 PRO 348 B THR 349 n 174 THR 349 B ILE 350 n 175 ILE 350 B GLY 351 n 176 GLY 351 B ILE 352 n 177 ILE 352 B LEU 353 n 178 LEU 353 B ASP 354 n 179 ASP 354 B THR 355 n 180 THR 355 B GLU 356 n 181 GLU 356 B LYS 357 n 182 LYS 357 B LYS 358 n 183 LYS 358 B GLU 359 n 184 GLU 359 B TYR 360 n 185 TYR 360 B ARG 361 n 186 ARG 361 B GLU 362 n 187 GLU 362 B ILE 363 n 188 ILE 363 B VAL 364 n 189 VAL 364 B LEU 365 n 190 LEU 365 B author_and_software_defined_assembly PQS 1 monomeric author_and_software_defined_assembly PQS 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 79 A O ILE 104 A N ALA 55 A N ALA 80 A O ILE 54 A O ILE 79 A N VAL 31 A N VAL 56 A O ILE 32 A O ILE 57 A N GLY 4 A N GLY 29 A N ILE 3 A N ILE 28 A O LEU 153 A O LEU 178 A N ILE 150 A N ILE 175 A O ILE 163 A O ILE 188 A N VAL 86 A N VAL 111 A O PHE 93 A O PHE 118 A N PHE 94 A N PHE 119 A O VAL 115 A O VAL 140 A N VAL 116 A N VAL 141 A O LEU 133 A O LEU 158 A O VAL 134 A O VAL 159 A N GLU 127 A N GLU 152 B O ILE 279 B O ILE 104 B N ALA 255 B N ALA 80 B O ILE 254 B O ILE 79 B N VAL 231 B N VAL 56 B O ILE 232 B O ILE 57 B N GLY 204 B N GLY 29 B N ILE 203 B N ILE 28 B O LEU 353 B O LEU 178 B N ILE 350 B N ILE 175 B O ILE 363 B O ILE 188 B N VAL 286 B N VAL 111 B O PHE 293 B O PHE 118 B N PHE 294 B N PHE 119 B O VAL 315 B O VAL 140 B N VAL 316 B N VAL 141 B O LEU 333 B O LEU 158 B O VAL 334 B O VAL 159 B N GLU 327 B N GLU 152 1 A MET -24 A MET 1 1 Y 1 A GLY -23 A GLY 2 1 Y 1 A SER -22 A SER 3 1 Y 1 A SER -21 A SER 4 1 Y 1 A HIS -20 A HIS 5 1 Y 1 A HIS -19 A HIS 6 1 Y 1 A HIS -18 A HIS 7 1 Y 1 A HIS -17 A HIS 8 1 Y 1 A HIS -16 A HIS 9 1 Y 1 A HIS -15 A HIS 10 1 Y 1 A ASP -14 A ASP 11 1 Y 1 A TYR -13 A TYR 12 1 Y 1 A ASP -12 A ASP 13 1 Y 1 A ILE -11 A ILE 14 1 Y 1 A PRO -10 A PRO 15 1 Y 1 A THR -9 A THR 16 1 Y 1 A THR -8 A THR 17 1 Y 1 A GLU -7 A GLU 18 1 Y 1 A ASN -6 A ASN 19 1 Y 1 A LEU -5 A LEU 20 1 Y 1 A TYR -4 A TYR 21 1 Y 1 A PHE -3 A PHE 22 1 Y 1 A GLN -2 A GLN 23 1 Y 1 A GLY -1 A GLY 24 1 Y 1 A HIS 0 A HIS 25 1 Y 1 B MET 176 B MET 1 1 Y 1 B GLY 177 B GLY 2 1 Y 1 B SER 178 B SER 3 1 Y 1 B SER 179 B SER 4 1 Y 1 B HIS 180 B HIS 5 1 Y 1 B HIS 181 B HIS 6 1 Y 1 B HIS 182 B HIS 7 1 Y 1 B HIS 183 B HIS 8 1 Y 1 B HIS 184 B HIS 9 1 Y 1 B HIS 185 B HIS 10 1 Y 1 B ASP 186 B ASP 11 1 Y 1 B TYR 187 B TYR 12 1 Y 1 B ASP 188 B ASP 13 1 Y 1 B ILE 189 B ILE 14 1 Y 1 B PRO 190 B PRO 15 1 Y 1 B THR 191 B THR 16 1 Y 1 B THR 192 B THR 17 1 Y 1 B GLU 193 B GLU 18 1 Y 1 B ASN 194 B ASN 19 1 Y 1 B LEU 195 B LEU 20 1 Y 1 B TYR 196 B TYR 21 1 Y 1 B PHE 197 B PHE 22 1 Y 1 B GLN 198 B GLN 23 1 Y 1 B GLY 199 B GLY 24 1 Y 1 B HIS 200 B HIS 25 1 Y 1 23.16 2.50 113.10 136.26 A A A N CA C GLY GLY GLY 35 35 35 N 1 -18.56 2.70 111.00 92.44 A A A N CA C ASP ASP ASP 36 36 36 N 1 23.11 2.50 113.10 136.21 B B B N CA C GLY GLY GLY 235 235 235 N 1 -18.48 2.70 111.00 92.52 B B B N CA C ASP ASP ASP 236 236 236 N 1 A A CE CE MET MET 106 106 2.05 1_555 6_655 1 B B CE CE MET MET 306 306 2.06 1_555 6_665 1 A ASP 11 58.87 14.48 1 A ASN 27 -57.46 -76.73 1 A VAL 28 52.52 95.13 1 A VAL 38 92.31 -76.74 1 A ASN 75 176.92 132.67 1 A HIS 99 -81.10 -90.07 1 B ASP 211 59.48 14.50 1 B ASN 227 -57.52 -76.52 1 B VAL 228 52.36 95.46 1 B VAL 238 91.53 -76.70 1 B ASN 275 176.71 132.27 1 B HIS 299 -81.07 -89.88 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP 57.7 4.55 0.00 0.00 4.55 0.00 -9.09 0.253 0.006 0.226 0.226 2.40 46.41 1830 18238 10.0 90.8 RANDOM 789293.30 0.000000 1 RESTRAINED THROUGHOUT 2.0 SAD FLAT MODEL 41.8502 0.358033 0.37 0.32 5.00 0.34 0.30 2.40 46.41 45 2711 7 0 2659 0.013 1.9 23.9 0.97 1.54 1.50 2.68 2.00 2.04 2.00 3.23 2.50 1 CONSTR 1 X-RAY DIFFRACTION 0.292 0.019 0.279 2.55 240 2259 6 9.6 75.0 50.3 2.4 20 1S3L 20082 20082 2 -3 0.13 1,2 24.5 12 2.40 2.49 5.5 0.37 1,2 4.5 refinement CNS 1.0 data reduction HKL-2000 data scaling SCALEPACK phasing CNS Structural and Functional Characterization of a Novel Archaeal Phosphodiesterase 1 N N 1 N N 2 N N 3 N N 2 N N 4 N N 4 N N A HIS 12 A HIS 37 HELX_P A GLU 26 A GLU 51 1 1 15 A LEU 40 A LEU 65 HELX_P A PHE 46 A PHE 71 1 2 7 A GLU 47 A GLU 72 HELX_P A LEU 49 A LEU 74 5 3 3 A GLU 63 A GLU 88 HELX_P A ASN 75 A ASN 100 1 4 13 A HIS 100 A HIS 125 HELX_P A GLY 111 A GLY 136 1 5 12 B HIS 212 B HIS 37 HELX_P B GLU 226 B GLU 51 1 6 15 B LEU 240 B LEU 65 HELX_P B PHE 246 B PHE 71 1 7 7 B GLU 247 B GLU 72 HELX_P B LEU 249 B LEU 74 5 8 3 B GLU 263 B GLU 88 HELX_P B ASN 275 B ASN 100 1 9 13 B HIS 300 B HIS 125 HELX_P B GLY 311 B GLY 136 1 10 12 PHOSPHODIESTERASE PHOSPHODIESTERASE, NUCLEASE, Structural Genomics, BSGC structure funded by NIH, Protein Structure Initiative, PSI, Berkeley Structural Genomics Center Y936_METJA UNP 1 1 Q58346 MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDINEENII DDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGECCGYLTGIPTIGILDTEKKEY REIVL 1 165 1S3L 1 165 Q58346 A 1 26 190 1 165 1S3L 201 365 Q58346 B 1 26 190 1 expression tag MET -24 1S3L A Q58346 UNP 1 1 expression tag GLY -23 1S3L A Q58346 UNP 2 1 expression tag SER -22 1S3L A Q58346 UNP 3 1 expression tag SER -21 1S3L A Q58346 UNP 4 1 expression tag HIS -20 1S3L A Q58346 UNP 5 1 expression tag HIS -19 1S3L A Q58346 UNP 6 1 expression tag HIS -18 1S3L A Q58346 UNP 7 1 expression tag HIS -17 1S3L A Q58346 UNP 8 1 expression tag HIS -16 1S3L A Q58346 UNP 9 1 expression tag HIS -15 1S3L A Q58346 UNP 10 1 expression tag ASP -14 1S3L A Q58346 UNP 11 1 expression tag TYR -13 1S3L A Q58346 UNP 12 1 expression tag ASP -12 1S3L A Q58346 UNP 13 1 expression tag ILE -11 1S3L A Q58346 UNP 14 1 expression tag PRO -10 1S3L A Q58346 UNP 15 1 expression tag THR -9 1S3L A Q58346 UNP 16 1 expression tag THR -8 1S3L A Q58346 UNP 17 1 expression tag GLU -7 1S3L A Q58346 UNP 18 1 expression tag ASN -6 1S3L A Q58346 UNP 19 1 expression tag LEU -5 1S3L A Q58346 UNP 20 1 expression tag TYR -4 1S3L A Q58346 UNP 21 1 expression tag PHE -3 1S3L A Q58346 UNP 22 1 expression tag GLN -2 1S3L A Q58346 UNP 23 1 expression tag GLY -1 1S3L A Q58346 UNP 24 1 expression tag HIS 0 1S3L A Q58346 UNP 25 2 expression tag MET 176 1S3L B Q58346 UNP 1 2 expression tag GLY 177 1S3L B Q58346 UNP 2 2 expression tag SER 178 1S3L B Q58346 UNP 3 2 expression tag SER 179 1S3L B Q58346 UNP 4 2 expression tag HIS 180 1S3L B Q58346 UNP 5 2 expression tag HIS 181 1S3L B Q58346 UNP 6 2 expression tag HIS 182 1S3L B Q58346 UNP 7 2 expression tag HIS 183 1S3L B Q58346 UNP 8 2 expression tag HIS 184 1S3L B Q58346 UNP 9 2 expression tag HIS 185 1S3L B Q58346 UNP 10 2 expression tag ASP 186 1S3L B Q58346 UNP 11 2 expression tag TYR 187 1S3L B Q58346 UNP 12 2 expression tag ASP 188 1S3L B Q58346 UNP 13 2 expression tag ILE 189 1S3L B Q58346 UNP 14 2 expression tag PRO 190 1S3L B Q58346 UNP 15 2 expression tag THR 191 1S3L B Q58346 UNP 16 2 expression tag THR 192 1S3L B Q58346 UNP 17 2 expression tag GLU 193 1S3L B Q58346 UNP 18 2 expression tag ASN 194 1S3L B Q58346 UNP 19 2 expression tag LEU 195 1S3L B Q58346 UNP 20 2 expression tag TYR 196 1S3L B Q58346 UNP 21 2 expression tag PHE 197 1S3L B Q58346 UNP 22 2 expression tag GLN 198 1S3L B Q58346 UNP 23 2 expression tag GLY 199 1S3L B Q58346 UNP 24 2 expression tag HIS 200 1S3L B Q58346 UNP 25 6 5 6 5 parallel parallel parallel anti-parallel anti-parallel anti-parallel parallel parallel anti-parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel parallel parallel anti-parallel A ILE 79 A ILE 104 A ASP 81 A ASP 106 A ASN 52 A ASN 77 A THR 56 A THR 81 A THR 30 A THR 55 A HIS 33 A HIS 58 A LYS 2 A LYS 27 A MET 6 A MET 31 A THR 149 A THR 174 A ASP 154 A ASP 179 A GLU 159 A GLU 184 A VAL 164 A VAL 189 A PHE 83 A PHE 108 A ILE 88 A ILE 113 A LEU 91 A LEU 116 A HIS 97 A HIS 122 A VAL 115 A VAL 140 A GLY 119 A GLY 144 A VAL 132 A VAL 157 A ASN 136 A ASN 161 A VAL 125 A VAL 150 A VAL 129 A VAL 154 B ILE 279 B ILE 104 B ASP 281 B ASP 106 B ASN 252 B ASN 77 B THR 256 B THR 81 B THR 230 B THR 55 B HIS 233 B HIS 58 B LYS 202 B LYS 27 B MET 206 B MET 31 B THR 349 B THR 174 B ASP 354 B ASP 179 B GLU 359 B GLU 184 B VAL 364 B VAL 189 B PHE 283 B PHE 108 B ILE 288 B ILE 113 B LEU 291 B LEU 116 B HIS 297 B HIS 122 B VAL 315 B VAL 140 B GLY 319 B GLY 144 B VAL 332 B VAL 157 B ASN 336 B ASN 161 B VAL 325 B VAL 150 B VAL 329 B VAL 154 BINDING SITE FOR RESIDUE PO4 B 600 B PO4 600 Software 5 BINDING SITE FOR RESIDUE UNX B 502 B UNX 502 Software 1 BINDING SITE FOR RESIDUE UNX A 503 A UNX 503 Software 1 A HIS 122 A HIS 147 5 1_555 A GLU 123 A GLU 148 5 1_555 A ARG 124 A ARG 149 5 1_555 B GLU 323 B GLU 148 5 1_555 B ARG 324 B ARG 149 5 1_555 B HIS 320 B HIS 145 1 1_555 A HIS 120 A HIS 145 1 1_555 80 I 41