0.008480
0.000000
0.000000
0.000000
0.008480
0.000000
0.000000
0.000000
0.008480
0.00000
0.00000
0.00000
Webb, A.I.
Dunstone, M.A.
Chen, W.
Aguilar, M.I.
Chen, Q.
Chang, L.
Kjer-Nielsen, L.
Beddoe, T.
McCluskey, J.
Rossjohn, J.
Purcell, A.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
90.00
117.920
117.920
117.920
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
279
23438
23446
10.1074/jbc.M314066200
15004033
Functional and structural characteristics of NY-ESO-1-related HLA A2-restricted epitopes and the design of a novel immunogenic analogue
2004
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH3R
31725.088
HLA class I histocompatibility antigen, A-2 alpha chain
Extracellular Domains alpha1, alpha2, alpha3
1
man
polymer
11879.356
Beta-2-microglobulin
1
man
polymer
1078.282
NY-ESO-1 peptide analogue S9S
1
syn
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
206
nat
water
HLA-A2, MHC class I antigen A*2
beta2 Microglobulin, HDCMA22P
no
no
GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGT
LRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYL
EGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT
FQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRW
GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGT
LRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYL
EGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT
FQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRW
A
polypeptide(L)
no
no
MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA
CRVNHVTLSQPKIVKWDRDM
MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA
CRVNHVTLSQPKIVKWDRDM
B
polypeptide(L)
no
no
SLLMWITQS
SLLMWITQS
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
1
3.06
59.78
VAPOR DIFFUSION, HANGING DROP
2.0M ammonium sulphate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
repository
Initial release
Version format compliance
Version format compliance
1
0
2004-09-28
1
1
2008-04-29
1
2
2011-07-13
Same HLA-A2 protein with NY-ESO-1 analogue, SLLMWITQC
Same HLA-A2 protein with NY-ESO-1 analogue, SLLMWITQA
RCSB
Y
PDBJ
2004-02-05
REL
SO4
SULFATE ION
HOH
water
Synthetic peptide
sample
SO4
1
4
SO4
SO4
1001
B
HOH
1
5
HOH
HOH
275
A
HOH
2
5
HOH
HOH
276
A
HOH
3
5
HOH
HOH
277
A
HOH
4
5
HOH
HOH
278
A
HOH
5
5
HOH
HOH
279
A
HOH
6
5
HOH
HOH
280
A
HOH
8
5
HOH
HOH
281
A
HOH
9
5
HOH
HOH
282
A
HOH
11
5
HOH
HOH
283
A
HOH
12
5
HOH
HOH
284
A
HOH
13
5
HOH
HOH
285
A
HOH
15
5
HOH
HOH
286
A
HOH
16
5
HOH
HOH
287
A
HOH
18
5
HOH
HOH
288
A
HOH
19
5
HOH
HOH
289
A
HOH
20
5
HOH
HOH
290
A
HOH
21
5
HOH
HOH
291
A
HOH
22
5
HOH
HOH
292
A
HOH
23
5
HOH
HOH
293
A
HOH
24
5
HOH
HOH
294
A
HOH
26
5
HOH
HOH
295
A
HOH
27
5
HOH
HOH
296
A
HOH
28
5
HOH
HOH
297
A
HOH
29
5
HOH
HOH
298
A
HOH
30
5
HOH
HOH
299
A
HOH
32
5
HOH
HOH
300
A
HOH
34
5
HOH
HOH
301
A
HOH
36
5
HOH
HOH
302
A
HOH
37
5
HOH
HOH
303
A
HOH
38
5
HOH
HOH
304
A
HOH
39
5
HOH
HOH
305
A
HOH
40
5
HOH
HOH
306
A
HOH
41
5
HOH
HOH
307
A
HOH
42
5
HOH
HOH
308
A
HOH
43
5
HOH
HOH
309
A
HOH
44
5
HOH
HOH
310
A
HOH
46
5
HOH
HOH
311
A
HOH
48
5
HOH
HOH
312
A
HOH
49
5
HOH
HOH
313
A
HOH
50
5
HOH
HOH
314
A
HOH
51
5
HOH
HOH
315
A
HOH
52
5
HOH
HOH
316
A
HOH
53
5
HOH
HOH
317
A
HOH
54
5
HOH
HOH
318
A
HOH
55
5
HOH
HOH
319
A
HOH
56
5
HOH
HOH
320
A
HOH
58
5
HOH
HOH
321
A
HOH
59
5
HOH
HOH
322
A
HOH
60
5
HOH
HOH
323
A
HOH
61
5
HOH
HOH
324
A
HOH
63
5
HOH
HOH
325
A
HOH
64
5
HOH
HOH
326
A
HOH
68
5
HOH
HOH
327
A
HOH
70
5
HOH
HOH
328
A
HOH
71
5
HOH
HOH
329
A
HOH
73
5
HOH
HOH
330
A
HOH
74
5
HOH
HOH
331
A
HOH
75
5
HOH
HOH
332
A
HOH
76
5
HOH
HOH
333
A
HOH
77
5
HOH
HOH
334
A
HOH
79
5
HOH
HOH
335
A
HOH
81
5
HOH
HOH
336
A
HOH
82
5
HOH
HOH
337
A
HOH
83
5
HOH
HOH
338
A
HOH
84
5
HOH
HOH
339
A
HOH
85
5
HOH
HOH
340
A
HOH
86
5
HOH
HOH
341
A
HOH
87
5
HOH
HOH
342
A
HOH
88
5
HOH
HOH
343
A
HOH
89
5
HOH
HOH
344
A
HOH
90
5
HOH
HOH
345
A
HOH
92
5
HOH
HOH
346
A
HOH
93
5
HOH
HOH
347
A
HOH
94
5
HOH
HOH
348
A
HOH
95
5
HOH
HOH
349
A
HOH
96
5
HOH
HOH
350
A
HOH
97
5
HOH
HOH
351
A
HOH
98
5
HOH
HOH
352
A
HOH
99
5
HOH
HOH
353
A
HOH
100
5
HOH
HOH
354
A
HOH
101
5
HOH
HOH
355
A
HOH
102
5
HOH
HOH
356
A
HOH
103
5
HOH
HOH
357
A
HOH
104
5
HOH
HOH
358
A
HOH
106
5
HOH
HOH
359
A
HOH
107
5
HOH
HOH
360
A
HOH
108
5
HOH
HOH
361
A
HOH
109
5
HOH
HOH
362
A
HOH
110
5
HOH
HOH
363
A
HOH
111
5
HOH
HOH
364
A
HOH
113
5
HOH
HOH
365
A
HOH
115
5
HOH
HOH
366
A
HOH
117
5
HOH
HOH
367
A
HOH
120
5
HOH
HOH
368
A
HOH
121
5
HOH
HOH
369
A
HOH
122
5
HOH
HOH
370
A
HOH
123
5
HOH
HOH
371
A
HOH
124
5
HOH
HOH
372
A
HOH
125
5
HOH
HOH
373
A
HOH
126
5
HOH
HOH
374
A
HOH
128
5
HOH
HOH
375
A
HOH
129
5
HOH
HOH
376
A
HOH
130
5
HOH
HOH
377
A
HOH
131
5
HOH
HOH
378
A
HOH
132
5
HOH
HOH
379
A
HOH
133
5
HOH
HOH
380
A
HOH
134
5
HOH
HOH
381
A
HOH
135
5
HOH
HOH
382
A
HOH
136
5
HOH
HOH
383
A
HOH
138
5
HOH
HOH
384
A
HOH
139
5
HOH
HOH
385
A
HOH
141
5
HOH
HOH
386
A
HOH
142
5
HOH
HOH
387
A
HOH
146
5
HOH
HOH
388
A
HOH
148
5
HOH
HOH
389
A
HOH
149
5
HOH
HOH
390
A
HOH
150
5
HOH
HOH
391
A
HOH
152
5
HOH
HOH
392
A
HOH
153
5
HOH
HOH
393
A
HOH
155
5
HOH
HOH
394
A
HOH
158
5
HOH
HOH
395
A
HOH
160
5
HOH
HOH
396
A
HOH
162
5
HOH
HOH
397
A
HOH
163
5
HOH
HOH
398
A
HOH
164
5
HOH
HOH
399
A
HOH
165
5
HOH
HOH
400
A
HOH
157
5
HOH
HOH
401
A
HOH
167
5
HOH
HOH
402
A
HOH
169
5
HOH
HOH
403
A
HOH
170
5
HOH
HOH
404
A
HOH
171
5
HOH
HOH
405
A
HOH
172
5
HOH
HOH
406
A
HOH
173
5
HOH
HOH
407
A
HOH
174
5
HOH
HOH
408
A
HOH
175
5
HOH
HOH
409
A
HOH
176
5
HOH
HOH
410
A
HOH
178
5
HOH
HOH
411
A
HOH
179
5
HOH
HOH
412
A
HOH
180
5
HOH
HOH
413
A
HOH
182
5
HOH
HOH
414
A
HOH
183
5
HOH
HOH
415
A
HOH
184
5
HOH
HOH
416
A
HOH
185
5
HOH
HOH
417
A
HOH
186
5
HOH
HOH
418
A
HOH
188
5
HOH
HOH
419
A
HOH
189
5
HOH
HOH
420
A
HOH
190
5
HOH
HOH
421
A
HOH
192
5
HOH
HOH
422
A
HOH
193
5
HOH
HOH
423
A
HOH
194
5
HOH
HOH
424
A
HOH
195
5
HOH
HOH
425
A
HOH
198
5
HOH
HOH
426
A
HOH
199
5
HOH
HOH
427
A
HOH
200
5
HOH
HOH
428
A
HOH
205
5
HOH
HOH
429
A
HOH
7
5
HOH
HOH
1002
B
HOH
10
5
HOH
HOH
1003
B
HOH
14
5
HOH
HOH
1004
B
HOH
17
5
HOH
HOH
1005
B
HOH
25
5
HOH
HOH
1006
B
HOH
31
5
HOH
HOH
1007
B
HOH
33
5
HOH
HOH
1008
B
HOH
47
5
HOH
HOH
1009
B
HOH
57
5
HOH
HOH
1010
B
HOH
62
5
HOH
HOH
1011
B
HOH
65
5
HOH
HOH
1012
B
HOH
66
5
HOH
HOH
1013
B
HOH
67
5
HOH
HOH
1014
B
HOH
69
5
HOH
HOH
1015
B
HOH
72
5
HOH
HOH
1016
B
HOH
114
5
HOH
HOH
1017
B
HOH
118
5
HOH
HOH
1018
B
HOH
119
5
HOH
HOH
1019
B
HOH
127
5
HOH
HOH
1020
B
HOH
137
5
HOH
HOH
1021
B
HOH
140
5
HOH
HOH
1022
B
HOH
143
5
HOH
HOH
1023
B
HOH
144
5
HOH
HOH
1024
B
HOH
145
5
HOH
HOH
1025
B
HOH
147
5
HOH
HOH
1026
B
HOH
154
5
HOH
HOH
1027
B
HOH
156
5
HOH
HOH
1028
B
HOH
159
5
HOH
HOH
1029
B
HOH
161
5
HOH
HOH
1030
B
HOH
91
5
HOH
HOH
1031
B
HOH
168
5
HOH
HOH
1032
B
HOH
177
5
HOH
HOH
1033
B
HOH
187
5
HOH
HOH
1034
B
HOH
191
5
HOH
HOH
1035
B
HOH
196
5
HOH
HOH
1036
B
HOH
197
5
HOH
HOH
1037
B
HOH
201
5
HOH
HOH
1038
B
HOH
202
5
HOH
HOH
1039
B
HOH
204
5
HOH
HOH
1040
B
HOH
206
5
HOH
HOH
1041
B
HOH
35
5
HOH
HOH
35
C
HOH
45
5
HOH
HOH
45
C
HOH
78
5
HOH
HOH
78
C
HOH
80
5
HOH
HOH
80
C
HOH
105
5
HOH
HOH
105
C
HOH
112
5
HOH
HOH
112
C
HOH
116
5
HOH
HOH
116
C
HOH
151
5
HOH
HOH
151
C
HOH
166
5
HOH
HOH
166
C
HOH
181
5
HOH
HOH
181
C
HOH
203
5
HOH
HOH
203
C
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
HIS
3
n
3
HIS
3
A
SER
4
n
4
SER
4
A
MET
5
n
5
MET
5
A
ARG
6
n
6
ARG
6
A
TYR
7
n
7
TYR
7
A
PHE
8
n
8
PHE
8
A
PHE
9
n
9
PHE
9
A
THR
10
n
10
THR
10
A
SER
11
n
11
SER
11
A
VAL
12
n
12
VAL
12
A
SER
13
n
13
SER
13
A
ARG
14
n
14
ARG
14
A
PRO
15
n
15
PRO
15
A
GLY
16
n
16
GLY
16
A
ARG
17
n
17
ARG
17
A
GLY
18
n
18
GLY
18
A
GLU
19
n
19
GLU
19
A
PRO
20
n
20
PRO
20
A
ARG
21
n
21
ARG
21
A
PHE
22
n
22
PHE
22
A
ILE
23
n
23
ILE
23
A
ALA
24
n
24
ALA
24
A
VAL
25
n
25
VAL
25
A
GLY
26
n
26
GLY
26
A
TYR
27
n
27
TYR
27
A
VAL
28
n
28
VAL
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
GLN
32
n
32
GLN
32
A
PHE
33
n
33
PHE
33
A
VAL
34
n
34
VAL
34
A
ARG
35
n
35
ARG
35
A
PHE
36
n
36
PHE
36
A
ASP
37
n
37
ASP
37
A
SER
38
n
38
SER
38
A
ASP
39
n
39
ASP
39
A
ALA
40
n
40
ALA
40
A
ALA
41
n
41
ALA
41
A
SER
42
n
42
SER
42
A
GLN
43
n
43
GLN
43
A
ARG
44
n
44
ARG
44
A
MET
45
n
45
MET
45
A
GLU
46
n
46
GLU
46
A
PRO
47
n
47
PRO
47
A
ARG
48
n
48
ARG
48
A
ALA
49
n
49
ALA
49
A
PRO
50
n
50
PRO
50
A
TRP
51
n
51
TRP
51
A
ILE
52
n
52
ILE
52
A
GLU
53
n
53
GLU
53
A
GLN
54
n
54
GLN
54
A
GLU
55
n
55
GLU
55
A
GLY
56
n
56
GLY
56
A
PRO
57
n
57
PRO
57
A
GLU
58
n
58
GLU
58
A
TYR
59
n
59
TYR
59
A
TRP
60
n
60
TRP
60
A
ASP
61
n
61
ASP
61
A
GLY
62
n
62
GLY
62
A
GLU
63
n
63
GLU
63
A
THR
64
n
64
THR
64
A
ARG
65
n
65
ARG
65
A
LYS
66
n
66
LYS
66
A
VAL
67
n
67
VAL
67
A
LYS
68
n
68
LYS
68
A
ALA
69
n
69
ALA
69
A
HIS
70
n
70
HIS
70
A
SER
71
n
71
SER
71
A
GLN
72
n
72
GLN
72
A
THR
73
n
73
THR
73
A
HIS
74
n
74
HIS
74
A
ARG
75
n
75
ARG
75
A
VAL
76
n
76
VAL
76
A
ASP
77
n
77
ASP
77
A
LEU
78
n
78
LEU
78
A
GLY
79
n
79
GLY
79
A
THR
80
n
80
THR
80
A
LEU
81
n
81
LEU
81
A
ARG
82
n
82
ARG
82
A
GLY
83
n
83
GLY
83
A
TYR
84
n
84
TYR
84
A
TYR
85
n
85
TYR
85
A
ASN
86
n
86
ASN
86
A
GLN
87
n
87
GLN
87
A
SER
88
n
88
SER
88
A
GLU
89
n
89
GLU
89
A
ALA
90
n
90
ALA
90
A
GLY
91
n
91
GLY
91
A
SER
92
n
92
SER
92
A
HIS
93
n
93
HIS
93
A
THR
94
n
94
THR
94
A
VAL
95
n
95
VAL
95
A
GLN
96
n
96
GLN
96
A
ARG
97
n
97
ARG
97
A
MET
98
n
98
MET
98
A
TYR
99
n
99
TYR
99
A
GLY
100
n
100
GLY
100
A
CYS
101
n
101
CYS
101
A
ASP
102
n
102
ASP
102
A
VAL
103
n
103
VAL
103
A
GLY
104
n
104
GLY
104
A
SER
105
n
105
SER
105
A
ASP
106
n
106
ASP
106
A
TRP
107
n
107
TRP
107
A
ARG
108
n
108
ARG
108
A
PHE
109
n
109
PHE
109
A
LEU
110
n
110
LEU
110
A
ARG
111
n
111
ARG
111
A
GLY
112
n
112
GLY
112
A
TYR
113
n
113
TYR
113
A
HIS
114
n
114
HIS
114
A
GLN
115
n
115
GLN
115
A
TYR
116
n
116
TYR
116
A
ALA
117
n
117
ALA
117
A
TYR
118
n
118
TYR
118
A
ASP
119
n
119
ASP
119
A
GLY
120
n
120
GLY
120
A
LYS
121
n
121
LYS
121
A
ASP
122
n
122
ASP
122
A
TYR
123
n
123
TYR
123
A
ILE
124
n
124
ILE
124
A
ALA
125
n
125
ALA
125
A
LEU
126
n
126
LEU
126
A
LYS
127
n
127
LYS
127
A
GLU
128
n
128
GLU
128
A
ASP
129
n
129
ASP
129
A
LEU
130
n
130
LEU
130
A
ARG
131
n
131
ARG
131
A
SER
132
n
132
SER
132
A
TRP
133
n
133
TRP
133
A
THR
134
n
134
THR
134
A
ALA
135
n
135
ALA
135
A
ALA
136
n
136
ALA
136
A
ASP
137
n
137
ASP
137
A
MET
138
n
138
MET
138
A
ALA
139
n
139
ALA
139
A
ALA
140
n
140
ALA
140
A
GLN
141
n
141
GLN
141
A
THR
142
n
142
THR
142
A
THR
143
n
143
THR
143
A
LYS
144
n
144
LYS
144
A
HIS
145
n
145
HIS
145
A
LYS
146
n
146
LYS
146
A
TRP
147
n
147
TRP
147
A
GLU
148
n
148
GLU
148
A
ALA
149
n
149
ALA
149
A
ALA
150
n
150
ALA
150
A
HIS
151
n
151
HIS
151
A
VAL
152
n
152
VAL
152
A
ALA
153
n
153
ALA
153
A
GLU
154
n
154
GLU
154
A
GLN
155
n
155
GLN
155
A
LEU
156
n
156
LEU
156
A
ARG
157
n
157
ARG
157
A
ALA
158
n
158
ALA
158
A
TYR
159
n
159
TYR
159
A
LEU
160
n
160
LEU
160
A
GLU
161
n
161
GLU
161
A
GLY
162
n
162
GLY
162
A
THR
163
n
163
THR
163
A
CYS
164
n
164
CYS
164
A
VAL
165
n
165
VAL
165
A
GLU
166
n
166
GLU
166
A
TRP
167
n
167
TRP
167
A
LEU
168
n
168
LEU
168
A
ARG
169
n
169
ARG
169
A
ARG
170
n
170
ARG
170
A
TYR
171
n
171
TYR
171
A
LEU
172
n
172
LEU
172
A
GLU
173
n
173
GLU
173
A
ASN
174
n
174
ASN
174
A
GLY
175
n
175
GLY
175
A
LYS
176
n
176
LYS
176
A
GLU
177
n
177
GLU
177
A
THR
178
n
178
THR
178
A
LEU
179
n
179
LEU
179
A
GLN
180
n
180
GLN
180
A
ARG
181
n
181
ARG
181
A
THR
182
n
182
THR
182
A
ASP
183
n
183
ASP
183
A
ALA
184
n
184
ALA
184
A
PRO
185
n
185
PRO
185
A
LYS
186
n
186
LYS
186
A
THR
187
n
187
THR
187
A
HIS
188
n
188
HIS
188
A
MET
189
n
189
MET
189
A
THR
190
n
190
THR
190
A
HIS
191
n
191
HIS
191
A
HIS
192
n
192
HIS
192
A
ALA
193
n
193
ALA
193
A
VAL
194
n
194
VAL
194
A
SER
195
n
195
SER
195
A
ASP
196
n
196
ASP
196
A
HIS
197
n
197
HIS
197
A
GLU
198
n
198
GLU
198
A
ALA
199
n
199
ALA
199
A
THR
200
n
200
THR
200
A
LEU
201
n
201
LEU
201
A
ARG
202
n
202
ARG
202
A
CYS
203
n
203
CYS
203
A
TRP
204
n
204
TRP
204
A
ALA
205
n
205
ALA
205
A
LEU
206
n
206
LEU
206
A
SER
207
n
207
SER
207
A
PHE
208
n
208
PHE
208
A
TYR
209
n
209
TYR
209
A
PRO
210
n
210
PRO
210
A
ALA
211
n
211
ALA
211
A
GLU
212
n
212
GLU
212
A
ILE
213
n
213
ILE
213
A
THR
214
n
214
THR
214
A
LEU
215
n
215
LEU
215
A
THR
216
n
216
THR
216
A
TRP
217
n
217
TRP
217
A
GLN
218
n
218
GLN
218
A
ARG
219
n
219
ARG
219
A
ASP
220
n
220
ASP
220
A
GLY
221
n
221
GLY
221
A
GLU
222
n
222
GLU
222
A
ASP
223
n
223
ASP
223
A
GLN
224
n
224
GLN
224
A
THR
225
n
225
THR
225
A
GLN
226
n
226
GLN
226
A
ASP
227
n
227
ASP
227
A
THR
228
n
228
THR
228
A
GLU
229
n
229
GLU
229
A
LEU
230
n
230
LEU
230
A
VAL
231
n
231
VAL
231
A
GLU
232
n
232
GLU
232
A
THR
233
n
233
THR
233
A
ARG
234
n
234
ARG
234
A
PRO
235
n
235
PRO
235
A
ALA
236
n
236
ALA
236
A
GLY
237
n
237
GLY
237
A
ASP
238
n
238
ASP
238
A
GLY
239
n
239
GLY
239
A
THR
240
n
240
THR
240
A
PHE
241
n
241
PHE
241
A
GLN
242
n
242
GLN
242
A
LYS
243
n
243
LYS
243
A
TRP
244
n
244
TRP
244
A
ALA
245
n
245
ALA
245
A
ALA
246
n
246
ALA
246
A
VAL
247
n
247
VAL
247
A
VAL
248
n
248
VAL
248
A
VAL
249
n
249
VAL
249
A
PRO
250
n
250
PRO
250
A
SER
251
n
251
SER
251
A
GLY
252
n
252
GLY
252
A
GLN
253
n
253
GLN
253
A
GLU
254
n
254
GLU
254
A
GLN
255
n
255
GLN
255
A
ARG
256
n
256
ARG
256
A
TYR
257
n
257
TYR
257
A
THR
258
n
258
THR
258
A
CYS
259
n
259
CYS
259
A
HIS
260
n
260
HIS
260
A
VAL
261
n
261
VAL
261
A
GLN
262
n
262
GLN
262
A
HIS
263
n
263
HIS
263
A
GLU
264
n
264
GLU
264
A
GLY
265
n
265
GLY
265
A
LEU
266
n
266
LEU
266
A
PRO
267
n
267
PRO
267
A
LYS
268
n
268
LYS
268
A
PRO
269
n
269
PRO
269
A
LEU
270
n
270
LEU
270
A
THR
271
n
271
THR
271
A
LEU
272
n
272
LEU
272
A
ARG
273
n
273
ARG
273
A
TRP
274
n
274
TRP
274
A
MET
0
n
1
MET
0
B
ILE
1
n
2
ILE
1
B
GLN
2
n
3
GLN
2
B
ARG
3
n
4
ARG
3
B
THR
4
n
5
THR
4
B
PRO
5
n
6
PRO
5
B
LYS
6
n
7
LYS
6
B
ILE
7
n
8
ILE
7
B
GLN
8
n
9
GLN
8
B
VAL
9
n
10
VAL
9
B
TYR
10
n
11
TYR
10
B
SER
11
n
12
SER
11
B
ARG
12
n
13
ARG
12
B
HIS
13
n
14
HIS
13
B
PRO
14
n
15
PRO
14
B
ALA
15
n
16
ALA
15
B
GLU
16
n
17
GLU
16
B
ASN
17
n
18
ASN
17
B
GLY
18
n
19
GLY
18
B
LYS
19
n
20
LYS
19
B
SER
20
n
21
SER
20
B
ASN
21
n
22
ASN
21
B
PHE
22
n
23
PHE
22
B
LEU
23
n
24
LEU
23
B
ASN
24
n
25
ASN
24
B
CYS
25
n
26
CYS
25
B
TYR
26
n
27
TYR
26
B
VAL
27
n
28
VAL
27
B
SER
28
n
29
SER
28
B
GLY
29
n
30
GLY
29
B
PHE
30
n
31
PHE
30
B
HIS
31
n
32
HIS
31
B
PRO
32
n
33
PRO
32
B
SER
33
n
34
SER
33
B
ASP
34
n
35
ASP
34
B
ILE
35
n
36
ILE
35
B
GLU
36
n
37
GLU
36
B
VAL
37
n
38
VAL
37
B
ASP
38
n
39
ASP
38
B
LEU
39
n
40
LEU
39
B
LEU
40
n
41
LEU
40
B
LYS
41
n
42
LYS
41
B
ASN
42
n
43
ASN
42
B
GLY
43
n
44
GLY
43
B
GLU
44
n
45
GLU
44
B
ARG
45
n
46
ARG
45
B
ILE
46
n
47
ILE
46
B
GLU
47
n
48
GLU
47
B
LYS
48
n
49
LYS
48
B
VAL
49
n
50
VAL
49
B
GLU
50
n
51
GLU
50
B
HIS
51
n
52
HIS
51
B
SER
52
n
53
SER
52
B
ASP
53
n
54
ASP
53
B
LEU
54
n
55
LEU
54
B
SER
55
n
56
SER
55
B
PHE
56
n
57
PHE
56
B
SER
57
n
58
SER
57
B
LYS
58
n
59
LYS
58
B
ASP
59
n
60
ASP
59
B
TRP
60
n
61
TRP
60
B
SER
61
n
62
SER
61
B
PHE
62
n
63
PHE
62
B
TYR
63
n
64
TYR
63
B
LEU
64
n
65
LEU
64
B
LEU
65
n
66
LEU
65
B
TYR
66
n
67
TYR
66
B
TYR
67
n
68
TYR
67
B
THR
68
n
69
THR
68
B
GLU
69
n
70
GLU
69
B
PHE
70
n
71
PHE
70
B
THR
71
n
72
THR
71
B
PRO
72
n
73
PRO
72
B
THR
73
n
74
THR
73
B
GLU
74
n
75
GLU
74
B
LYS
75
n
76
LYS
75
B
ASP
76
n
77
ASP
76
B
GLU
77
n
78
GLU
77
B
TYR
78
n
79
TYR
78
B
ALA
79
n
80
ALA
79
B
CYS
80
n
81
CYS
80
B
ARG
81
n
82
ARG
81
B
VAL
82
n
83
VAL
82
B
ASN
83
n
84
ASN
83
B
HIS
84
n
85
HIS
84
B
VAL
85
n
86
VAL
85
B
THR
86
n
87
THR
86
B
LEU
87
n
88
LEU
87
B
SER
88
n
89
SER
88
B
GLN
89
n
90
GLN
89
B
PRO
90
n
91
PRO
90
B
LYS
91
n
92
LYS
91
B
ILE
92
n
93
ILE
92
B
VAL
93
n
94
VAL
93
B
LYS
94
n
95
LYS
94
B
TRP
95
n
96
TRP
95
B
ASP
96
n
97
ASP
96
B
ARG
97
n
98
ARG
97
B
ASP
98
n
99
ASP
98
B
MET
99
n
100
MET
99
B
SER
1
n
1
SER
1
C
LEU
2
n
2
LEU
2
C
LEU
3
n
3
LEU
3
C
MET
4
n
4
MET
4
C
TRP
5
n
5
TRP
5
C
ILE
6
n
6
ILE
6
C
THR
7
n
7
THR
7
C
GLN
8
n
8
GLN
8
C
SER
9
n
9
SER
9
C
author_and_software_defined_assembly
PISA
3
trimeric
4580
-31
18690
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
46
A
O
GLU
46
A
N
ARG
35
A
N
ARG
35
A
O
THR
31
A
O
THR
31
A
N
VAL
28
A
N
VAL
28
A
O
VAL
25
A
O
VAL
25
A
N
PHE
8
A
N
PHE
8
A
N
PHE
9
A
N
PHE
9
A
O
ARG
97
A
O
ARG
97
A
N
MET
98
A
N
MET
98
A
O
GLN
115
A
O
GLN
115
A
N
HIS
114
A
N
HIS
114
A
O
LEU
126
A
O
LEU
126
A
N
ALA
125
A
N
ALA
125
A
O
THR
134
A
O
THR
134
A
N
LYS
186
A
N
LYS
186
A
O
LEU
206
A
O
LEU
206
A
N
CYS
203
A
N
CYS
203
A
O
ALA
245
A
O
ALA
245
A
O
ALA
246
A
O
ALA
246
A
N
GLU
229
A
N
GLU
229
A
N
LYS
186
A
N
LYS
186
A
O
LEU
206
A
O
LEU
206
A
N
CYS
203
A
N
CYS
203
A
O
ALA
245
A
O
ALA
245
A
O
GLN
242
A
O
GLN
242
A
N
ARG
234
A
N
ARG
234
A
O
GLU
222
A
O
GLU
222
A
N
ARG
219
A
N
ARG
219
A
N
THR
216
A
N
THR
216
A
O
HIS
260
A
O
HIS
260
A
N
CYS
259
A
N
CYS
259
A
O
LEU
272
A
O
LEU
272
B
N
TYR
10
B
N
TYR
11
B
O
ASN
24
B
O
ASN
25
B
N
ASN
21
B
N
ASN
22
B
O
PHE
70
B
O
PHE
71
B
O
TYR
67
B
O
TYR
68
B
N
GLU
50
B
N
GLU
51
B
N
TYR
10
B
N
TYR
11
B
O
ASN
24
B
O
ASN
25
B
N
ASN
21
B
N
ASN
22
B
O
PHE
70
B
O
PHE
71
B
O
TYR
63
B
O
TYR
64
B
N
SER
55
B
N
SER
56
B
O
GLU
44
B
O
GLU
45
B
N
LYS
41
B
N
LYS
42
B
N
GLU
36
B
N
GLU
37
B
O
ASN
83
B
O
ASN
84
B
N
VAL
82
B
N
VAL
83
B
O
LYS
91
B
O
LYS
92
1
A
HOH
395
E
HOH
1
A
HOH
410
E
HOH
1
A
ASP
29
56.51
-130.15
1
A
LYS
176
-29.09
-52.47
1
A
THR
178
-134.73
-50.81
1
A
SER
195
-125.03
-160.12
1
A
PRO
210
-69.07
-179.09
1
A
ASP
220
56.27
19.41
1
A
GLN
226
-149.04
32.08
1
A
ASP
227
-163.45
11.72
1
A
LYS
243
-178.49
148.08
1
A
GLU
264
-57.97
-6.57
1
B
ASN
21
-142.49
-155.93
1
B
HIS
31
-173.89
133.27
1
B
PRO
32
-66.03
-176.42
1
B
LYS
48
-82.95
34.09
1
B
THR
68
-178.47
135.39
1
B
ASP
98
-89.17
48.31
0.273
0.236
0.236
2.3
50
54324
22859
random
1
MOLECULAR REPLACEMENT
Engh & Huber
2.3
50
206
3361
5
0
3150
0.007
1.26
0.70
24.94
2.30
50
1S9Y
54324
22859
0
0
0.053
1
10.5
2.4
92.9
0.288
2.3
2.4
2.8
74.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
HLA class I histocompatibility antigen, A-2 alpha chain/Beta-2-microglobulin/NY-ESO-1 peptide analogue S9S
Crystal Structure Analysis of NY-ESO-1 epitope analogue, SLLMWITQS, in complex with HLA-A2
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
ALA
49
A
ALA
49
HELX_P
A
GLU
55
A
GLU
55
5
1
7
A
GLY
56
A
GLY
56
HELX_P
A
TYR
85
A
TYR
85
1
2
30
A
ASP
137
A
ASP
137
HELX_P
A
ALA
150
A
ALA
150
1
3
14
A
HIS
151
A
HIS
151
HELX_P
A
GLY
162
A
GLY
162
1
4
12
A
GLY
162
A
GLY
162
HELX_P
A
GLN
180
A
GLN
180
1
5
19
A
GLN
253
A
GLN
253
HELX_P
A
GLN
255
A
GLN
255
5
6
3
disulf
2.044
A
CYS
101
A
SG
CYS
101
1_555
A
CYS
164
A
SG
CYS
164
1_555
disulf
2.030
A
CYS
203
A
SG
CYS
203
1_555
A
CYS
259
A
SG
CYS
259
1_555
disulf
2.031
B
CYS
25
B
SG
CYS
26
1_555
B
CYS
80
B
SG
CYS
81
1_555
IMMUNE SYSTEM
IMMUNE SYSTEM
A
TYR
209
A
TYR
209
1
A
PRO
210
A
PRO
210
0.21
B
HIS
31
B
HIS
32
1
B
PRO
32
B
PRO
33
0.32
1A02_HUMAN
UNP
1
25
P01892
GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGT
LRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYL
EGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT
FQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRW
B2MG_HUMAN
UNP
2
21
P61769
IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC
RVNHVTLSQPKIVKWDRDM
1S9Y
PDB
3
1S9Y
25
298
1S9Y
1
274
P01892
A
1
1
274
21
119
1S9Y
1
99
P61769
B
2
2
100
1
9
1S9Y
1
9
1S9Y
C
3
1
9
2
INITIATING METHIONINE
MET
0
1S9Y
B
P61769
UNP
1
8
4
4
4
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
46
A
GLU
46
A
PRO
47
A
PRO
47
A
THR
31
A
THR
31
A
ASP
37
A
ASP
37
A
GLY
18
A
GLY
18
A
VAL
28
A
VAL
28
A
HIS
3
A
HIS
3
A
ARG
14
A
ARG
14
A
THR
94
A
THR
94
A
VAL
103
A
VAL
103
A
PHE
109
A
PHE
109
A
TYR
118
A
TYR
118
A
LYS
121
A
LYS
121
A
LEU
126
A
LEU
126
A
TRP
133
A
TRP
133
A
ALA
135
A
ALA
135
A
LYS
186
A
LYS
186
A
ALA
193
A
ALA
193
A
GLU
198
A
GLU
198
A
PHE
208
A
PHE
208
A
PHE
241
A
PHE
241
A
PRO
250
A
PRO
250
A
THR
228
A
THR
228
A
LEU
230
A
LEU
230
A
LYS
186
A
LYS
186
A
ALA
193
A
ALA
193
A
GLU
198
A
GLU
198
A
PHE
208
A
PHE
208
A
PHE
241
A
PHE
241
A
PRO
250
A
PRO
250
A
ARG
234
A
ARG
234
A
PRO
235
A
PRO
235
A
GLU
222
A
GLU
222
A
ASP
223
A
ASP
223
A
THR
214
A
THR
214
A
ARG
219
A
ARG
219
A
TYR
257
A
TYR
257
A
GLN
262
A
GLN
262
A
LEU
270
A
LEU
270
A
LEU
272
A
LEU
272
B
LYS
6
B
LYS
7
B
SER
11
B
SER
12
B
ASN
21
B
ASN
22
B
PHE
30
B
PHE
31
B
PHE
62
B
PHE
63
B
PHE
70
B
PHE
71
B
GLU
50
B
GLU
51
B
HIS
51
B
HIS
52
B
LYS
6
B
LYS
7
B
SER
11
B
SER
12
B
ASN
21
B
ASN
22
B
PHE
30
B
PHE
31
B
PHE
62
B
PHE
63
B
PHE
70
B
PHE
71
B
SER
55
B
SER
56
B
PHE
56
B
PHE
57
B
GLU
44
B
GLU
45
B
ARG
45
B
ARG
46
B
ILE
35
B
ILE
36
B
LYS
41
B
LYS
42
B
TYR
78
B
TYR
79
B
HIS
84
B
HIS
85
B
LYS
91
B
LYS
92
B
LYS
94
B
LYS
95
BINDING SITE FOR RESIDUE SO4 B 1001
Software
3
A
ARG
21
A
ARG
21
3
1_555
B
HIS
51
B
HIS
52
3
1_555
B
HOH
1005
F
HOH
3
1_555
198
P 21 3