0.003832
0.000000
0.000466
0.000000
0.013394
0.000000
0.000000
0.000000
0.017521
0.00000
0.00000
0.00000
Staker, B.L.
Feese, M.D.
Cushman, M.
Pommier, Y.
Zembower, D.
Stewart, L.
Burgin, A.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
96.94
90.00
260.940
74.659
57.494
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C20 H15 N O4
333.337
4-(5,11-DIOXO-5H-INDENO[1,2-C]ISOQUINOLIN-6(11H)-YL)BUTANOATE
non-polymer
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H18 O5
194.226
TETRAETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H12 N O6 P
261.168
n
O-PHOSPHOTYROSINE
PHOSPHONOTYROSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C10 H14 N5 O6 P S
363.287
n
5'-THIO-2'-DEOXY-GUANOSINE PHOSPHONIC ACID
DNA linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Med.Chem.
JMCMAR
0151
0022-2623
48
2336
2345
10.1021/jm049146p
15801827
Structures of three classes of anticancer agents bound to the human topoisomerase I-DNA covalent complex
2005
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
X25
NSLS
1.1
SYNCHROTRON
NSLS BEAMLINE X25
3061.057
5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3'
1
syn
polymer
3716.518
5'-D(*(TGP)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3'
1
syn
polymer
6690.362
5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*CP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3'
1
syn
polymer
70248.023
DNA topoisomerase I
5.99.1.2
1
man
polymer
333.337
4-(5,11-DIOXO-5H-INDENO[1,2-C]ISOQUINOLIN-6(11H)-YL)BUTANOATE
1
syn
non-polymer
194.226
TETRAETHYLENE GLYCOL
1
syn
non-polymer
no
no
(DA)(DA)(DA)(DA)(DA)(DG)(DA)(DC)(DT)(DT)
AAAAAGACTT
B
polydeoxyribonucleotide
no
yes
(TGP)(DG)(DA)(DA)(DA)(DA)(DA)(DT)(DT)(DT)(DT)(DT)
GGAAAAATTTTT
C
polydeoxyribonucleotide
no
no
(DA)(DA)(DA)(DA)(DA)(DT)(DT)(DT)(DT)(DT)(DC)(DC)(DA)(DA)(DG)(DT)(DC)(DT)(DT)(DT)
(DT)(DT)
AAAAATTTTTCCAAGTCTTTTT
D
polydeoxyribonucleotide
no
yes
KKPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA
EEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEK
LLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWL
VSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEK
EEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL
NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDA
KKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLN(PTR)LDPRIT
VAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF
KKPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA
EEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEK
LLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWL
VSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEK
EEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL
NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDA
KKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWC
KKWGVPIEKIYNKTQREKFAWAIDMADEDYEF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
fall armyworm
Spodoptera
sample
TOP1
9606
Homo sapiens
7108
Spodoptera frugiperda
baculovirus
1
3.32
62.96
VAPOR DIFFUSION, SITTING DROP
6.4
PEG 8000, AMMONIUM SULFATE, MES, pH 6.4, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
PEG 8000
1
AMMONIUM SULFATE
1
MES
1
AMMONIUM SULFATE
2
MES
2
2.055
1
20
B
1
D
122
-2.832
B_DA1:DT122_D
1
-5.751
-0.986
0.242
-0.194
6.870
1
20
B
2
D
121
1.439
B_DA2:DT121_D
2
-13.424
0.577
0.309
-0.286
2.263
1
20
B
3
D
120
1.989
B_DA3:DT120_D
3
-9.613
0.489
0.335
-0.284
8.665
1
20
B
4
D
119
-1.198
B_DA4:DT119_D
4
-9.987
-0.205
0.501
-0.408
2.770
1
20
B
5
D
118
13.813
B_DA5:DT118_D
5
-10.301
0.780
0.371
-0.298
-11.678
1
19
B
6
D
117
1.474
B_DG6:DC117_D
6
-10.362
-0.215
-0.374
-0.147
2.558
1
20
B
7
D
116
1.463
B_DA7:DT116_D
7
-5.388
0.106
0.223
-0.215
7.389
1
19
B
8
D
115
-2.197
B_DC8:DG115_D
8
-9.733
-0.030
0.148
-0.044
-8.173
1
20
B
9
D
114
-1.967
B_DT9:DA114_D
9
-4.618
-0.645
0.352
-0.298
-3.321
1
20
B
10
D
113
3.198
B_DT10:DA113_D
10
-10.782
0.318
0.053
-0.438
-18.589
1
19
C
11
D
112
-3.543
C_TGP11:DC112_D
11
-0.295
-0.604
-0.809
-0.240
-1.070
1
19
C
12
D
111
7.147
C_DG12:DC111_D
12
-11.556
-0.603
-0.175
-0.216
5.977
1
20
C
13
D
110
3.854
C_DA13:DT110_D
13
-15.282
-0.148
0.236
-0.306
2.938
1
20
C
14
D
109
1.550
C_DA14:DT109_D
14
-15.675
0.743
0.103
-0.010
2.105
1
20
C
15
D
108
8.982
C_DA15:DT108_D
15
-18.450
0.146
0.108
-0.212
-0.881
1
20
C
16
D
107
1.878
C_DA16:DT107_D
16
-15.320
-0.048
0.100
-0.153
-5.553
1
20
C
17
D
106
13.468
C_DA17:DT106_D
17
-13.459
-0.350
0.134
-0.144
-2.485
1
20
C
18
D
105
1.351
C_DT18:DA105_D
18
-11.534
0.098
0.167
-0.186
-4.467
1
20
C
19
D
104
9.837
C_DT19:DA104_D
19
-9.418
0.142
0.215
-0.100
-1.849
1
20
C
20
D
103
-0.667
C_DT20:DA103_D
20
-13.129
-0.386
-0.021
-0.163
-11.077
1
20
C
21
D
102
4.428
C_DT21:DA102_D
21
-14.613
-0.858
0.312
0.067
-3.496
1
20
C
22
D
101
0.702
C_DT22:DA101_D
22
-10.719
-0.461
0.355
0.014
3.088
45.067
B
B
1
2
0.025
D
D
122
121
3.088
0.020
0.028
0.189
BB_DA1DA2:DT121DT122_DD
1
0.067
-0.088
45.067
0.245
-0.030
3.167
41.329
B
B
2
3
-6.918
D
D
121
120
3.202
-4.870
-0.559
0.372
BB_DA2DA3:DT120DT121_DD
2
-2.581
3.667
40.975
1.037
0.522
3.083
35.442
B
B
3
4
-11.270
D
D
120
119
3.023
-6.820
0.347
-0.601
BB_DA3DA4:DT119DT120_DD
3
0.027
-0.045
34.801
-0.043
-0.567
3.400
43.278
B
B
4
5
-4.104
D
D
119
118
3.375
-3.023
0.557
-0.072
BB_DA4DA5:DT118DT119_DD
4
2.847
-3.866
43.088
0.208
-0.467
3.572
30.202
B
B
5
6
3.283
D
D
118
117
3.684
1.704
-0.206
-0.697
BB_DA5DG6:DC117DT118_DD
5
4.427
-8.531
29.836
-1.723
1.399
2.894
33.104
B
B
6
7
-1.366
D
D
117
116
2.910
-0.774
-0.156
-0.243
BB_DG6DA7:DT116DC117_DD
6
-6.250
11.033
32.516
-0.311
-0.670
3.102
33.289
B
B
7
8
-0.630
D
D
116
115
3.091
-0.361
0.535
-1.058
BB_DA7DC8:DG115DT116_DD
7
0.024
-0.043
33.287
-1.790
-0.930
3.648
36.015
B
B
8
9
-2.943
D
D
115
114
3.607
-1.818
0.049
-0.945
BB_DC8DT9:DA114DG115_DD
8
1.593
-2.578
35.937
-1.242
0.172
3.073
38.023
B
B
9
10
-2.059
D
D
114
113
3.100
-1.340
-0.410
-0.655
BB_DT9DT10:DA113DA114_DD
9
3.476
-5.342
37.847
-0.843
1.047
3.217
32.057
C
C
11
12
13.569
D
D
112
111
2.903
7.402
-1.374
0.978
CC_TGP11DG12:DC111DC112_DD
10
-4.771
8.745
30.855
0.499
1.669
2.956
40.569
C
C
12
13
1.975
D
D
111
110
2.941
1.366
-0.164
0.565
CC_DG12DA13:DT110DC111_DD
11
-5.106
7.383
40.237
0.677
-0.278
3.268
40.546
C
C
13
14
0.035
D
D
110
109
3.258
0.024
-0.356
0.161
CC_DA13DA14:DT109DT110_DD
12
-1.251
1.806
40.528
0.229
0.375
3.235
38.115
C
C
14
15
-4.914
D
D
109
108
3.206
-3.205
0.368
-0.337
CC_DA14DA15:DT108DT109_DD
13
1.649
-2.529
37.950
-0.116
-0.358
3.265
34.692
C
C
15
16
-2.935
D
D
108
107
3.268
-1.749
-0.170
0.050
CC_DA15DA16:DT107DT108_DD
14
-1.034
1.736
34.634
0.353
0.127
3.261
36.291
C
C
16
17
-3.698
D
D
107
106
3.251
-2.302
0.345
-0.147
CC_DA16DA17:DT106DT107_DD
15
0.840
-1.349
36.211
0.085
-0.437
3.159
35.417
C
C
17
18
-2.570
D
D
106
105
3.137
-1.563
-0.118
-0.652
CC_DA17DT18:DA105DT106_DD
16
0.755
-1.241
35.376
-0.851
0.301
3.270
38.773
C
C
18
19
-5.474
D
D
105
104
3.286
-3.628
0.646
0.285
CC_DT18DT19:DA104DA105_DD
17
1.652
-2.493
38.575
0.874
-0.771
3.063
34.412
C
C
19
20
-6.200
D
D
104
103
3.089
-3.661
-0.648
-0.117
CC_DT19DT20:DA103DA104_DD
18
1.071
-1.814
34.206
0.340
1.252
3.397
41.016
C
C
20
21
-5.295
D
D
103
102
3.387
-3.705
-0.014
-0.261
CC_DT20DT21:DA102DA103_DD
19
-0.340
0.486
40.854
0.046
-0.019
3.110
39.387
C
C
21
22
1.532
D
D
102
101
3.129
1.031
0.208
0.081
CC_DT21DT22:DA101DA102_DD
20
-2.659
3.949
39.288
0.003
-0.609
repository
Initial release
Version format compliance
Version format compliance
1
0
2005-04-19
1
1
2008-04-29
1
2
2011-07-13
Human DNA Topoisomerase I (70 Kda) In Complex With The Poison Topotecan and Covalent Complex With A 22 Base Pair DNA Duplex
Human DNA Topoisomerase I In Covalent Complex With A 22 Base Pair DNA Duplex
RCSB
Y
RCSB
2004-02-11
REL
M38
4-(5,11-DIOXO-5H-INDENO[1,2-C]ISOQUINOLIN-6(11H)-YL)BUTANOATE
PG4
TETRAETHYLENE GLYCOL
M38
990
5
M38
M38
990
C
PG4
911
6
PG4
PG4
911
A
A
1
n
1
DA
1
B
A
2
n
2
DA
2
B
A
3
n
3
DA
3
B
A
4
n
4
DA
4
B
A
5
n
5
DA
5
B
G
6
n
6
DG
6
B
A
7
n
7
DA
7
B
C
8
n
8
DC
8
B
T
9
n
9
DT
9
B
T
10
n
10
DT
10
B
TGP
11
n
1
TGP
11
C
G
12
n
2
DG
12
C
A
13
n
3
DA
13
C
A
14
n
4
DA
14
C
A
15
n
5
DA
15
C
A
16
n
6
DA
16
C
A
17
n
7
DA
17
C
T
18
n
8
DT
18
C
T
19
n
9
DT
19
C
T
20
n
10
DT
20
C
T
21
n
11
DT
21
C
T
22
n
12
DT
22
C
A
101
n
1
DA
101
D
A
102
n
2
DA
102
D
A
103
n
3
DA
103
D
A
104
n
4
DA
104
D
A
105
n
5
DA
105
D
T
106
n
6
DT
106
D
T
107
n
7
DT
107
D
T
108
n
8
DT
108
D
T
109
n
9
DT
109
D
T
110
n
10
DT
110
D
C
111
n
11
DC
111
D
C
112
n
12
DC
112
D
A
113
n
13
DA
113
D
A
114
n
14
DA
114
D
G
115
n
15
DG
115
D
T
116
n
16
DT
116
D
C
117
n
17
DC
117
D
T
118
n
18
DT
118
D
T
119
n
19
DT
119
D
T
120
n
20
DT
120
D
T
121
n
21
DT
121
D
T
122
n
22
DT
122
D
n
1
174
A
n
2
175
A
n
3
176
A
n
4
177
A
n
5
178
A
n
6
179
A
n
7
180
A
n
8
181
A
n
9
182
A
n
10
183
A
n
11
184
A
n
12
185
A
n
13
186
A
n
14
187
A
n
15
188
A
n
16
189
A
n
17
190
A
n
18
191
A
n
19
192
A
n
20
193
A
n
21
194
A
n
22
195
A
n
23
196
A
n
24
197
A
n
25
198
A
ALA
199
n
26
GLU
199
A
ALA
200
n
27
GLU
200
A
ALA
201
n
28
GLN
201
A
ALA
202
n
29
LYS
202
A
TRP
203
n
30
TRP
203
A
LYS
204
n
31
LYS
204
A
TRP
205
n
32
TRP
205
A
TRP
206
n
33
TRP
206
A
GLU
207
n
34
GLU
207
A
GLU
208
n
35
GLU
208
A
GLU
209
n
36
GLU
209
A
ARG
210
n
37
ARG
210
A
TYR
211
n
38
TYR
211
A
PRO
212
n
39
PRO
212
A
GLU
213
n
40
GLU
213
A
GLY
214
n
41
GLY
214
A
ILE
215
n
42
ILE
215
A
LYS
216
n
43
LYS
216
A
TRP
217
n
44
TRP
217
A
LYS
218
n
45
LYS
218
A
PHE
219
n
46
PHE
219
A
LEU
220
n
47
LEU
220
A
GLU
221
n
48
GLU
221
A
HIS
222
n
49
HIS
222
A
LYS
223
n
50
LYS
223
A
GLY
224
n
51
GLY
224
A
PRO
225
n
52
PRO
225
A
VAL
226
n
53
VAL
226
A
PHE
227
n
54
PHE
227
A
ALA
228
n
55
ALA
228
A
PRO
229
n
56
PRO
229
A
PRO
230
n
57
PRO
230
A
TYR
231
n
58
TYR
231
A
GLU
232
n
59
GLU
232
A
PRO
233
n
60
PRO
233
A
LEU
234
n
61
LEU
234
A
PRO
235
n
62
PRO
235
A
GLU
236
n
63
GLU
236
A
ASN
237
n
64
ASN
237
A
VAL
238
n
65
VAL
238
A
LYS
239
n
66
LYS
239
A
PHE
240
n
67
PHE
240
A
TYR
241
n
68
TYR
241
A
TYR
242
n
69
TYR
242
A
ASP
243
n
70
ASP
243
A
GLY
244
n
71
GLY
244
A
LYS
245
n
72
LYS
245
A
VAL
246
n
73
VAL
246
A
MET
247
n
74
MET
247
A
LYS
248
n
75
LYS
248
A
LEU
249
n
76
LEU
249
A
SER
250
n
77
SER
250
A
PRO
251
n
78
PRO
251
A
LYS
252
n
79
LYS
252
A
ALA
253
n
80
ALA
253
A
GLU
254
n
81
GLU
254
A
GLU
255
n
82
GLU
255
A
VAL
256
n
83
VAL
256
A
ALA
257
n
84
ALA
257
A
THR
258
n
85
THR
258
A
PHE
259
n
86
PHE
259
A
PHE
260
n
87
PHE
260
A
ALA
261
n
88
ALA
261
A
LYS
262
n
89
LYS
262
A
MET
263
n
90
MET
263
A
LEU
264
n
91
LEU
264
A
ASP
265
n
92
ASP
265
A
HIS
266
n
93
HIS
266
A
GLU
267
n
94
GLU
267
A
TYR
268
n
95
TYR
268
A
THR
269
n
96
THR
269
A
THR
270
n
97
THR
270
A
LYS
271
n
98
LYS
271
A
GLU
272
n
99
GLU
272
A
ILE
273
n
100
ILE
273
A
PHE
274
n
101
PHE
274
A
ARG
275
n
102
ARG
275
A
LYS
276
n
103
LYS
276
A
ASN
277
n
104
ASN
277
A
PHE
278
n
105
PHE
278
A
PHE
279
n
106
PHE
279
A
LYS
280
n
107
LYS
280
A
ASP
281
n
108
ASP
281
A
TRP
282
n
109
TRP
282
A
ARG
283
n
110
ARG
283
A
LYS
284
n
111
LYS
284
A
GLU
285
n
112
GLU
285
A
MET
286
n
113
MET
286
A
THR
287
n
114
THR
287
A
ASN
288
n
115
ASN
288
A
GLU
289
n
116
GLU
289
A
GLU
290
n
117
GLU
290
A
LYS
291
n
118
LYS
291
A
ASN
292
n
119
ASN
292
A
ILE
293
n
120
ILE
293
A
ILE
294
n
121
ILE
294
A
THR
295
n
122
THR
295
A
ASN
296
n
123
ASN
296
A
LEU
297
n
124
LEU
297
A
SER
298
n
125
SER
298
A
LYS
299
n
126
LYS
299
A
CYS
300
n
127
CYS
300
A
ASP
301
n
128
ASP
301
A
PHE
302
n
129
PHE
302
A
THR
303
n
130
THR
303
A
GLN
304
n
131
GLN
304
A
MET
305
n
132
MET
305
A
SER
306
n
133
SER
306
A
GLN
307
n
134
GLN
307
A
TYR
308
n
135
TYR
308
A
PHE
309
n
136
PHE
309
A
LYS
310
n
137
LYS
310
A
ALA
311
n
138
ALA
311
A
GLN
312
n
139
GLN
312
A
THR
313
n
140
THR
313
A
GLU
314
n
141
GLU
314
A
ALA
315
n
142
ALA
315
A
ARG
316
n
143
ARG
316
A
LYS
317
n
144
LYS
317
A
GLN
318
n
145
GLN
318
A
MET
319
n
146
MET
319
A
SER
320
n
147
SER
320
A
LYS
321
n
148
LYS
321
A
GLU
322
n
149
GLU
322
A
GLU
323
n
150
GLU
323
A
LYS
324
n
151
LYS
324
A
LEU
325
n
152
LEU
325
A
LYS
326
n
153
LYS
326
A
ILE
327
n
154
ILE
327
A
LYS
328
n
155
LYS
328
A
GLU
329
n
156
GLU
329
A
GLU
330
n
157
GLU
330
A
ASN
331
n
158
ASN
331
A
GLU
332
n
159
GLU
332
A
LYS
333
n
160
LYS
333
A
LEU
334
n
161
LEU
334
A
LEU
335
n
162
LEU
335
A
LYS
336
n
163
LYS
336
A
GLU
337
n
164
GLU
337
A
TYR
338
n
165
TYR
338
A
GLY
339
n
166
GLY
339
A
PHE
340
n
167
PHE
340
A
CYS
341
n
168
CYS
341
A
ILE
342
n
169
ILE
342
A
MET
343
n
170
MET
343
A
ASP
344
n
171
ASP
344
A
ASN
345
n
172
ASN
345
A
HIS
346
n
173
HIS
346
A
LYS
347
n
174
LYS
347
A
GLU
348
n
175
GLU
348
A
ARG
349
n
176
ARG
349
A
ILE
350
n
177
ILE
350
A
ALA
351
n
178
ALA
351
A
ASN
352
n
179
ASN
352
A
PHE
353
n
180
PHE
353
A
LYS
354
n
181
LYS
354
A
ILE
355
n
182
ILE
355
A
GLU
356
n
183
GLU
356
A
PRO
357
n
184
PRO
357
A
PRO
358
n
185
PRO
358
A
GLY
359
n
186
GLY
359
A
LEU
360
n
187
LEU
360
A
PHE
361
n
188
PHE
361
A
ARG
362
n
189
ARG
362
A
GLY
363
n
190
GLY
363
A
ARG
364
n
191
ARG
364
A
GLY
365
n
192
GLY
365
A
ASN
366
n
193
ASN
366
A
HIS
367
n
194
HIS
367
A
PRO
368
n
195
PRO
368
A
LYS
369
n
196
LYS
369
A
MET
370
n
197
MET
370
A
GLY
371
n
198
GLY
371
A
MET
372
n
199
MET
372
A
LEU
373
n
200
LEU
373
A
LYS
374
n
201
LYS
374
A
ARG
375
n
202
ARG
375
A
ARG
376
n
203
ARG
376
A
ILE
377
n
204
ILE
377
A
MET
378
n
205
MET
378
A
PRO
379
n
206
PRO
379
A
GLU
380
n
207
GLU
380
A
ASP
381
n
208
ASP
381
A
ILE
382
n
209
ILE
382
A
ILE
383
n
210
ILE
383
A
ILE
384
n
211
ILE
384
A
ASN
385
n
212
ASN
385
A
CYS
386
n
213
CYS
386
A
SER
387
n
214
SER
387
A
LYS
388
n
215
LYS
388
A
ASP
389
n
216
ASP
389
A
ALA
390
n
217
ALA
390
A
LYS
391
n
218
LYS
391
A
VAL
392
n
219
VAL
392
A
PRO
393
n
220
PRO
393
A
SER
394
n
221
SER
394
A
PRO
395
n
222
PRO
395
A
PRO
396
n
223
PRO
396
A
PRO
397
n
224
PRO
397
A
GLY
398
n
225
GLY
398
A
HIS
399
n
226
HIS
399
A
LYS
400
n
227
LYS
400
A
TRP
401
n
228
TRP
401
A
LYS
402
n
229
LYS
402
A
GLU
403
n
230
GLU
403
A
VAL
404
n
231
VAL
404
A
ARG
405
n
232
ARG
405
A
HIS
406
n
233
HIS
406
A
ASP
407
n
234
ASP
407
A
ASN
408
n
235
ASN
408
A
LYS
409
n
236
LYS
409
A
VAL
410
n
237
VAL
410
A
THR
411
n
238
THR
411
A
TRP
412
n
239
TRP
412
A
LEU
413
n
240
LEU
413
A
VAL
414
n
241
VAL
414
A
SER
415
n
242
SER
415
A
TRP
416
n
243
TRP
416
A
THR
417
n
244
THR
417
A
GLU
418
n
245
GLU
418
A
ASN
419
n
246
ASN
419
A
ILE
420
n
247
ILE
420
A
GLN
421
n
248
GLN
421
A
GLY
422
n
249
GLY
422
A
SER
423
n
250
SER
423
A
ILE
424
n
251
ILE
424
A
LYS
425
n
252
LYS
425
A
TYR
426
n
253
TYR
426
A
ILE
427
n
254
ILE
427
A
MET
428
n
255
MET
428
A
LEU
429
n
256
LEU
429
A
ASN
430
n
257
ASN
430
A
PRO
431
n
258
PRO
431
A
SER
432
n
259
SER
432
A
SER
433
n
260
SER
433
A
ARG
434
n
261
ARG
434
A
ILE
435
n
262
ILE
435
A
LYS
436
n
263
LYS
436
A
GLY
437
n
264
GLY
437
A
GLU
438
n
265
GLU
438
A
LYS
439
n
266
LYS
439
A
ASP
440
n
267
ASP
440
A
TRP
441
n
268
TRP
441
A
GLN
442
n
269
GLN
442
A
LYS
443
n
270
LYS
443
A
TYR
444
n
271
TYR
444
A
GLU
445
n
272
GLU
445
A
THR
446
n
273
THR
446
A
ALA
447
n
274
ALA
447
A
ARG
448
n
275
ARG
448
A
ARG
449
n
276
ARG
449
A
LEU
450
n
277
LEU
450
A
LYS
451
n
278
LYS
451
A
LYS
452
n
279
LYS
452
A
CYS
453
n
280
CYS
453
A
VAL
454
n
281
VAL
454
A
ASP
455
n
282
ASP
455
A
LYS
456
n
283
LYS
456
A
ILE
457
n
284
ILE
457
A
ARG
458
n
285
ARG
458
A
ASN
459
n
286
ASN
459
A
GLN
460
n
287
GLN
460
A
TYR
461
n
288
TYR
461
A
ARG
462
n
289
ARG
462
A
GLU
463
n
290
GLU
463
A
ASP
464
n
291
ASP
464
A
TRP
465
n
292
TRP
465
A
LYS
466
n
293
LYS
466
A
SER
467
n
294
SER
467
A
LYS
468
n
295
LYS
468
A
GLU
469
n
296
GLU
469
A
MET
470
n
297
MET
470
A
LYS
471
n
298
LYS
471
A
VAL
472
n
299
VAL
472
A
ARG
473
n
300
ARG
473
A
GLN
474
n
301
GLN
474
A
ARG
475
n
302
ARG
475
A
ALA
476
n
303
ALA
476
A
VAL
477
n
304
VAL
477
A
ALA
478
n
305
ALA
478
A
LEU
479
n
306
LEU
479
A
TYR
480
n
307
TYR
480
A
PHE
481
n
308
PHE
481
A
ILE
482
n
309
ILE
482
A
ASP
483
n
310
ASP
483
A
LYS
484
n
311
LYS
484
A
LEU
485
n
312
LEU
485
A
ALA
486
n
313
ALA
486
A
LEU
487
n
314
LEU
487
A
ARG
488
n
315
ARG
488
A
ALA
489
n
316
ALA
489
A
GLY
490
n
317
GLY
490
A
ASN
491
n
318
ASN
491
A
GLU
492
n
319
GLU
492
A
LYS
493
n
320
LYS
493
A
GLU
494
n
321
GLU
494
A
GLU
495
n
322
GLU
495
A
GLY
496
n
323
GLY
496
A
GLU
497
n
324
GLU
497
A
THR
498
n
325
THR
498
A
ALA
499
n
326
ALA
499
A
ASP
500
n
327
ASP
500
A
THR
501
n
328
THR
501
A
VAL
502
n
329
VAL
502
A
GLY
503
n
330
GLY
503
A
CYS
504
n
331
CYS
504
A
CYS
505
n
332
CYS
505
A
SER
506
n
333
SER
506
A
LEU
507
n
334
LEU
507
A
ARG
508
n
335
ARG
508
A
VAL
509
n
336
VAL
509
A
GLU
510
n
337
GLU
510
A
HIS
511
n
338
HIS
511
A
ILE
512
n
339
ILE
512
A
ASN
513
n
340
ASN
513
A
LEU
514
n
341
LEU
514
A
HIS
515
n
342
HIS
515
A
PRO
516
n
343
PRO
516
A
GLU
517
n
344
GLU
517
A
LEU
518
n
345
LEU
518
A
ASP
519
n
346
ASP
519
A
GLY
520
n
347
GLY
520
A
GLN
521
n
348
GLN
521
A
GLU
522
n
349
GLU
522
A
TYR
523
n
350
TYR
523
A
VAL
524
n
351
VAL
524
A
VAL
525
n
352
VAL
525
A
GLU
526
n
353
GLU
526
A
PHE
527
n
354
PHE
527
A
ASP
528
n
355
ASP
528
A
PHE
529
n
356
PHE
529
A
LEU
530
n
357
LEU
530
A
GLY
531
n
358
GLY
531
A
LYS
532
n
359
LYS
532
A
ASP
533
n
360
ASP
533
A
SER
534
n
361
SER
534
A
ILE
535
n
362
ILE
535
A
ARG
536
n
363
ARG
536
A
TYR
537
n
364
TYR
537
A
TYR
538
n
365
TYR
538
A
ASN
539
n
366
ASN
539
A
LYS
540
n
367
LYS
540
A
VAL
541
n
368
VAL
541
A
PRO
542
n
369
PRO
542
A
VAL
543
n
370
VAL
543
A
GLU
544
n
371
GLU
544
A
LYS
545
n
372
LYS
545
A
ARG
546
n
373
ARG
546
A
VAL
547
n
374
VAL
547
A
PHE
548
n
375
PHE
548
A
LYS
549
n
376
LYS
549
A
ASN
550
n
377
ASN
550
A
LEU
551
n
378
LEU
551
A
GLN
552
n
379
GLN
552
A
LEU
553
n
380
LEU
553
A
PHE
554
n
381
PHE
554
A
MET
555
n
382
MET
555
A
GLU
556
n
383
GLU
556
A
ASN
557
n
384
ASN
557
A
LYS
558
n
385
LYS
558
A
GLN
559
n
386
GLN
559
A
PRO
560
n
387
PRO
560
A
GLU
561
n
388
GLU
561
A
ASP
562
n
389
ASP
562
A
ASP
563
n
390
ASP
563
A
LEU
564
n
391
LEU
564
A
PHE
565
n
392
PHE
565
A
ASP
566
n
393
ASP
566
A
ARG
567
n
394
ARG
567
A
LEU
568
n
395
LEU
568
A
ASN
569
n
396
ASN
569
A
THR
570
n
397
THR
570
A
GLY
571
n
398
GLY
571
A
ILE
572
n
399
ILE
572
A
LEU
573
n
400
LEU
573
A
ASN
574
n
401
ASN
574
A
LYS
575
n
402
LYS
575
A
HIS
576
n
403
HIS
576
A
LEU
577
n
404
LEU
577
A
GLN
578
n
405
GLN
578
A
ASP
579
n
406
ASP
579
A
LEU
580
n
407
LEU
580
A
MET
581
n
408
MET
581
A
GLU
582
n
409
GLU
582
A
GLY
583
n
410
GLY
583
A
LEU
584
n
411
LEU
584
A
THR
585
n
412
THR
585
A
ALA
586
n
413
ALA
586
A
LYS
587
n
414
LYS
587
A
VAL
588
n
415
VAL
588
A
PHE
589
n
416
PHE
589
A
ARG
590
n
417
ARG
590
A
THR
591
n
418
THR
591
A
TYR
592
n
419
TYR
592
A
ASN
593
n
420
ASN
593
A
ALA
594
n
421
ALA
594
A
SER
595
n
422
SER
595
A
ILE
596
n
423
ILE
596
A
THR
597
n
424
THR
597
A
LEU
598
n
425
LEU
598
A
GLN
599
n
426
GLN
599
A
GLN
600
n
427
GLN
600
A
GLN
601
n
428
GLN
601
A
LEU
602
n
429
LEU
602
A
LYS
603
n
430
LYS
603
A
GLU
604
n
431
GLU
604
A
LEU
605
n
432
LEU
605
A
THR
606
n
433
THR
606
A
ALA
607
n
434
ALA
607
A
PRO
608
n
435
PRO
608
A
ASP
609
n
436
ASP
609
A
GLU
610
n
437
GLU
610
A
ASN
611
n
438
ASN
611
A
ILE
612
n
439
ILE
612
A
PRO
613
n
440
PRO
613
A
ALA
614
n
441
ALA
614
A
LYS
615
n
442
LYS
615
A
ILE
616
n
443
ILE
616
A
LEU
617
n
444
LEU
617
A
SER
618
n
445
SER
618
A
TYR
619
n
446
TYR
619
A
ASN
620
n
447
ASN
620
A
ARG
621
n
448
ARG
621
A
ALA
622
n
449
ALA
622
A
ASN
623
n
450
ASN
623
A
ARG
624
n
451
ARG
624
A
ALA
625
n
452
ALA
625
A
VAL
626
n
453
VAL
626
A
ALA
627
n
454
ALA
627
A
ILE
628
n
455
ILE
628
A
LEU
629
n
456
LEU
629
A
CYS
630
n
457
CYS
630
A
ASN
631
n
458
ASN
631
A
HIS
632
n
459
HIS
632
A
GLN
633
n
460
GLN
633
A
ALA
634
n
461
ARG
634
A
ALA
635
n
462
ALA
635
A
PRO
636
n
463
PRO
636
A
PRO
637
n
464
PRO
637
A
LYS
638
n
465
LYS
638
A
THR
639
n
466
THR
639
A
PHE
640
n
467
PHE
640
A
GLU
641
n
468
GLU
641
A
LYS
642
n
469
LYS
642
A
SER
643
n
470
SER
643
A
MET
644
n
471
MET
644
A
MET
645
n
472
MET
645
A
ASN
646
n
473
ASN
646
A
LEU
647
n
474
LEU
647
A
GLN
648
n
475
GLN
648
A
THR
649
n
476
THR
649
A
LYS
650
n
477
LYS
650
A
ILE
651
n
478
ILE
651
A
ASP
652
n
479
ASP
652
A
ALA
653
n
480
ALA
653
A
LYS
654
n
481
LYS
654
A
LYS
655
n
482
LYS
655
A
GLU
656
n
483
GLU
656
A
GLN
657
n
484
GLN
657
A
LEU
658
n
485
LEU
658
A
ALA
659
n
486
ALA
659
A
ASP
660
n
487
ASP
660
A
ALA
661
n
488
ALA
661
A
ARG
662
n
489
ARG
662
A
ARG
663
n
490
ARG
663
A
ASP
664
n
491
ASP
664
A
LEU
665
n
492
LEU
665
A
LYS
666
n
493
LYS
666
A
SER
667
n
494
SER
667
A
ALA
668
n
495
ALA
668
A
LYS
669
n
496
LYS
669
A
ALA
670
n
497
ALA
670
A
ASP
671
n
498
ASP
671
A
ALA
672
n
499
ALA
672
A
LYS
673
n
500
LYS
673
A
VAL
674
n
501
VAL
674
A
MET
675
n
502
MET
675
A
LYS
676
n
503
LYS
676
A
ASP
677
n
504
ASP
677
A
ALA
678
n
505
ALA
678
A
LYS
679
n
506
LYS
679
A
THR
680
n
507
THR
680
A
LYS
681
n
508
LYS
681
A
LYS
682
n
509
LYS
682
A
VAL
683
n
510
VAL
683
A
VAL
684
n
511
VAL
684
A
GLU
685
n
512
GLU
685
A
SER
686
n
513
SER
686
A
LYS
687
n
514
LYS
687
A
LYS
688
n
515
LYS
688
A
LYS
689
n
516
LYS
689
A
ALA
690
n
517
ALA
690
A
VAL
691
n
518
VAL
691
A
GLN
692
n
519
GLN
692
A
ARG
693
n
520
ARG
693
A
LEU
694
n
521
LEU
694
A
GLU
695
n
522
GLU
695
A
GLU
696
n
523
GLU
696
A
GLN
697
n
524
GLN
697
A
LEU
698
n
525
LEU
698
A
MET
699
n
526
MET
699
A
LYS
700
n
527
LYS
700
A
LEU
701
n
528
LEU
701
A
GLU
702
n
529
GLU
702
A
VAL
703
n
530
VAL
703
A
GLN
704
n
531
GLN
704
A
ALA
705
n
532
ALA
705
A
THR
706
n
533
THR
706
A
ASP
707
n
534
ASP
707
A
ARG
708
n
535
ARG
708
A
GLU
709
n
536
GLU
709
A
GLU
710
n
537
GLU
710
A
ASN
711
n
538
ASN
711
A
LYS
712
n
539
LYS
712
A
GLN
713
n
540
GLN
713
A
ILE
714
n
541
ILE
714
A
ALA
715
n
542
ALA
715
A
LEU
716
n
543
LEU
716
A
GLY
717
n
544
GLY
717
A
THR
718
n
545
THR
718
A
SER
719
n
546
SER
719
A
LYS
720
n
547
LYS
720
A
LEU
721
n
548
LEU
721
A
ASN
722
n
549
ASN
722
A
PTR
723
n
550
PTR
723
A
LEU
724
n
551
LEU
724
A
ASP
725
n
552
ASP
725
A
PRO
726
n
553
PRO
726
A
ARG
727
n
554
ARG
727
A
ILE
728
n
555
ILE
728
A
THR
729
n
556
THR
729
A
VAL
730
n
557
VAL
730
A
ALA
731
n
558
ALA
731
A
TRP
732
n
559
TRP
732
A
CYS
733
n
560
CYS
733
A
LYS
734
n
561
LYS
734
A
LYS
735
n
562
LYS
735
A
TRP
736
n
563
TRP
736
A
GLY
737
n
564
GLY
737
A
VAL
738
n
565
VAL
738
A
PRO
739
n
566
PRO
739
A
ILE
740
n
567
ILE
740
A
GLU
741
n
568
GLU
741
A
LYS
742
n
569
LYS
742
A
ILE
743
n
570
ILE
743
A
TYR
744
n
571
TYR
744
A
ASN
745
n
572
ASN
745
A
LYS
746
n
573
LYS
746
A
THR
747
n
574
THR
747
A
GLN
748
n
575
GLN
748
A
ARG
749
n
576
ARG
749
A
GLU
750
n
577
GLU
750
A
LYS
751
n
578
LYS
751
A
PHE
752
n
579
PHE
752
A
ALA
753
n
580
ALA
753
A
TRP
754
n
581
TRP
754
A
ALA
755
n
582
ALA
755
A
ILE
756
n
583
ILE
756
A
ASP
757
n
584
ASP
757
A
MET
758
n
585
MET
758
A
ALA
759
n
586
ALA
759
A
ASP
760
n
587
ASP
760
A
GLU
761
n
588
GLU
761
A
ASP
762
n
589
ASP
762
A
TYR
763
n
590
TYR
763
A
GLU
764
n
591
GLU
764
A
PHE
765
n
592
PHE
765
A
author_defined_assembly
4
tetrameric
C
TGP
11
B
TGP
1
DG
A
PTR
723
O-PHOSPHOTYROSINE
D
PTR
550
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
221
D
N
GLU
48
A
O
ILE
342
D
O
ILE
169
A
N
MET
343
D
N
MET
170
A
O
HIS
346
D
O
HIS
173
A
O
LYS
245
D
O
LYS
72
A
N
TYR
242
D
N
TYR
69
A
N
TYR
241
D
N
TYR
68
A
O
ASP
301
D
O
ASP
128
A
O
ARG
405
D
O
ARG
232
A
N
ILE
384
D
N
ILE
211
A
N
ILE
383
D
N
ILE
210
A
O
SER
415
D
O
SER
242
A
N
TRP
416
D
N
TRP
243
A
O
LYS
425
D
O
LYS
252
A
N
ASN
513
D
N
ASN
340
A
O
GLU
526
D
O
GLU
353
A
N
PHE
529
D
N
PHE
356
A
O
TYR
537
D
O
TYR
364
1
A
CG
GLU
199
D
CG
GLU
26
1
Y
1
A
CD
GLU
199
D
CD
GLU
26
1
Y
1
A
OE1
GLU
199
D
OE1
GLU
26
1
Y
1
A
OE2
GLU
199
D
OE2
GLU
26
1
Y
1
A
CG
GLU
200
D
CG
GLU
27
1
Y
1
A
CD
GLU
200
D
CD
GLU
27
1
Y
1
A
OE1
GLU
200
D
OE1
GLU
27
1
Y
1
A
OE2
GLU
200
D
OE2
GLU
27
1
Y
1
A
CG
GLN
201
D
CG
GLN
28
1
Y
1
A
CD
GLN
201
D
CD
GLN
28
1
Y
1
A
OE1
GLN
201
D
OE1
GLN
28
1
Y
1
A
NE2
GLN
201
D
NE2
GLN
28
1
Y
1
A
CG
LYS
202
D
CG
LYS
29
1
Y
1
A
CD
LYS
202
D
CD
LYS
29
1
Y
1
A
CE
LYS
202
D
CE
LYS
29
1
Y
1
A
NZ
LYS
202
D
NZ
LYS
29
1
Y
1
A
CG
ARG
634
D
CG
ARG
461
1
Y
1
A
CD
ARG
634
D
CD
ARG
461
1
Y
1
A
NE
ARG
634
D
NE
ARG
461
1
Y
1
A
CZ
ARG
634
D
CZ
ARG
461
1
Y
1
A
NH1
ARG
634
D
NH1
ARG
461
1
Y
1
A
NH2
ARG
634
D
NH2
ARG
461
1
Y
1
A
LYS
174
D
LYS
1
1
Y
1
A
LYS
175
D
LYS
2
1
Y
1
A
PRO
176
D
PRO
3
1
Y
1
A
LYS
177
D
LYS
4
1
Y
1
A
ASN
178
D
ASN
5
1
Y
1
A
LYS
179
D
LYS
6
1
Y
1
A
ASP
180
D
ASP
7
1
Y
1
A
LYS
181
D
LYS
8
1
Y
1
A
ASP
182
D
ASP
9
1
Y
1
A
LYS
183
D
LYS
10
1
Y
1
A
LYS
184
D
LYS
11
1
Y
1
A
VAL
185
D
VAL
12
1
Y
1
A
PRO
186
D
PRO
13
1
Y
1
A
GLU
187
D
GLU
14
1
Y
1
A
PRO
188
D
PRO
15
1
Y
1
A
ASP
189
D
ASP
16
1
Y
1
A
ASN
190
D
ASN
17
1
Y
1
A
LYS
191
D
LYS
18
1
Y
1
A
LYS
192
D
LYS
19
1
Y
1
A
LYS
193
D
LYS
20
1
Y
1
A
LYS
194
D
LYS
21
1
Y
1
A
PRO
195
D
PRO
22
1
Y
1
A
LYS
196
D
LYS
23
1
Y
1
A
LYS
197
D
LYS
24
1
Y
1
A
GLU
198
D
GLU
25
1
Y
1
D
DC
112
0.085
SIDE CHAIN
1
9.41
1.50
119.30
128.71
A
A
A
C
N
CA
ALA
PRO
PRO
635
636
636
Y
1
A
GLN
201
-109.27
-65.17
1
A
LYS
202
68.48
94.35
1
A
LYS
204
-111.59
73.98
1
A
GLU
213
-5.21
119.00
1
A
ASP
344
52.84
76.33
1
A
ASN
345
62.73
-0.56
1
A
ARG
362
-134.98
-57.21
1
A
ARG
375
54.87
136.14
1
A
PRO
397
-31.84
118.02
1
A
HIS
406
-115.92
77.88
1
A
ASP
500
-63.43
92.05
1
A
GLU
517
-105.31
-128.77
1
A
LEU
518
64.73
139.57
1
A
ASP
519
65.24
-0.26
1
A
ASN
557
38.77
49.78
1
A
PHE
565
-100.76
65.63
1
A
ILE
628
-102.75
61.64
1
A
LEU
629
-172.03
-53.61
1
A
ARG
634
65.89
114.57
1
A
PRO
636
9.56
70.55
1
A
GLU
641
-171.90
-43.58
1
A
LYS
676
49.26
157.98
1
A
ALA
678
65.19
-64.80
1
A
THR
680
71.91
39.02
1
A
ASN
711
-105.74
45.26
1
A
ILE
743
-131.27
-62.49
1
A
ALA
759
45.12
107.56
PROTEIN.PARAM
PROTEIN.TOP
DNA-RNA.PARAM
DNA-RNA.TOP
WATER_REP.PAR
WATER_REP.TOP
ION.PARAM
ION.TOP
M38_PAR.PAR
M38_TOP.TOP
43.8
-4.90
0.00
-0.33
18.44
0.00
-13.54
0.285
0.007
0.233
3.00
19.85
1908
19449
9.8
87.9
RANDOM
1029408.66
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
FLAT MODEL
10
0.314251
0.48
0.36
5.00
0.43
0.33
3.00
19.85
0
5629
38
892
4699
0.011
1.6
25.6
6.18
1.65
1.50
2.89
2.00
2.70
2.00
4.55
2.50
0.407
0.026
0.325
3.19
250
2432
6
9.3
73.1
3.0
20
1SC7
18923
0.096
1
15.1
90.1
3.00
3.08
2.3
1224
0.327
32.7
refinement
CNX
2002
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
AMoRE
DNA topoisomerase I/5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3'
Human DNA Topoisomerase I (70 Kda) In Complex With The Indenoisoquinoline MJ-II-38 and Covalent Complex With A 22 Base Pair DNA Duplex
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
SER
250
D
SER
77
HELX_P
A
LEU
264
D
LEU
91
1
1
15
A
GLU
267
D
GLU
94
HELX_P
A
THR
270
D
THR
97
5
2
4
A
LYS
271
D
LYS
98
HELX_P
A
GLU
285
D
GLU
112
1
3
15
A
THR
287
D
THR
114
HELX_P
A
ILE
294
D
ILE
121
1
4
8
A
ASN
296
D
ASN
123
HELX_P
A
SER
298
D
SER
125
5
5
3
A
GLN
304
D
GLN
131
HELX_P
A
ALA
315
D
ALA
142
1
6
12
A
SER
320
D
SER
147
HELX_P
A
LEU
325
D
LEU
152
1
7
6
A
LYS
326
D
LYS
153
HELX_P
A
TYR
338
D
TYR
165
1
8
13
A
MET
378
D
MET
205
HELX_P
A
ASP
381
D
ASP
208
5
9
4
A
SER
433
D
SER
260
HELX_P
A
LYS
452
D
LYS
279
1
10
20
A
CYS
453
D
CYS
280
HELX_P
A
ASP
464
D
ASP
291
1
11
12
A
GLU
469
D
GLU
296
HELX_P
A
LEU
485
D
LEU
312
1
12
17
A
LYS
532
D
LYS
359
HELX_P
A
SER
534
D
SER
361
5
13
3
A
GLU
544
D
GLU
371
HELX_P
A
GLU
556
D
GLU
383
1
14
13
A
ASN
569
D
ASN
396
HELX_P
A
ASP
579
D
ASP
406
1
15
11
A
LYS
587
D
LYS
414
HELX_P
A
LEU
605
D
LEU
432
1
16
19
A
ASN
611
D
ASN
438
HELX_P
A
VAL
626
D
VAL
453
1
17
16
A
LEU
647
D
LEU
474
HELX_P
A
LYS
650
D
LYS
477
5
18
4
A
ILE
651
D
ILE
478
HELX_P
A
MET
675
D
MET
502
1
19
25
A
LYS
681
D
LYS
508
HELX_P
A
LYS
687
D
LYS
514
1
20
7
A
LYS
688
D
LYS
515
HELX_P
A
GLU
702
D
GLU
529
1
21
15
A
GLU
702
D
GLU
529
HELX_P
A
GLU
710
D
GLU
537
1
22
9
A
LEU
716
D
LEU
543
HELX_P
A
PTR
723
D
PTR
550
1
23
8
A
ASP
725
D
ASP
552
HELX_P
A
LYS
734
D
LYS
561
1
24
10
A
PRO
739
D
PRO
566
HELX_P
A
ILE
743
D
ILE
570
5
25
5
A
ASN
745
D
ASN
572
HELX_P
A
PHE
752
D
PHE
579
1
26
8
A
PHE
752
D
PHE
579
HELX_P
A
MET
758
D
MET
585
1
27
7
covale
1.429
B
DT
10
A
C3'
DT
10
1_555
A
PTR
723
D
O3P
PTR
550
1_555
covale
1.332
A
ASN
722
D
C
ASN
549
1_555
A
PTR
723
D
N
PTR
550
1_555
covale
1.333
A
PTR
723
D
C
PTR
550
1_555
A
LEU
724
D
N
LEU
551
1_555
covale
1.612
C
TGP
11
B
O3'
TGP
1
1_555
C
DG
12
B
P
DG
2
1_555
hydrog
WATSON-CRICK
B
DA
1
A
N1
DA
1
1_555
D
DT
122
C
N3
DT
22
1_555
hydrog
WATSON-CRICK
B
DA
1
A
N6
DA
1
1_555
D
DT
122
C
O4
DT
22
1_555
hydrog
WATSON-CRICK
B
DA
2
A
N1
DA
2
1_555
D
DT
121
C
N3
DT
21
1_555
hydrog
WATSON-CRICK
B
DA
2
A
N6
DA
2
1_555
D
DT
121
C
O4
DT
21
1_555
hydrog
WATSON-CRICK
B
DA
3
A
N1
DA
3
1_555
D
DT
120
C
N3
DT
20
1_555
hydrog
WATSON-CRICK
B
DA
3
A
N6
DA
3
1_555
D
DT
120
C
O4
DT
20
1_555
hydrog
WATSON-CRICK
B
DA
4
A
N1
DA
4
1_555
D
DT
119
C
N3
DT
19
1_555
hydrog
WATSON-CRICK
B
DA
4
A
N6
DA
4
1_555
D
DT
119
C
O4
DT
19
1_555
hydrog
WATSON-CRICK
B
DA
5
A
N1
DA
5
1_555
D
DT
118
C
N3
DT
18
1_555
hydrog
WATSON-CRICK
B
DA
5
A
N6
DA
5
1_555
D
DT
118
C
O4
DT
18
1_555
hydrog
WATSON-CRICK
B
DG
6
A
N1
DG
6
1_555
D
DC
117
C
N3
DC
17
1_555
hydrog
WATSON-CRICK
B
DG
6
A
N2
DG
6
1_555
D
DC
117
C
O2
DC
17
1_555
hydrog
WATSON-CRICK
B
DG
6
A
O6
DG
6
1_555
D
DC
117
C
N4
DC
17
1_555
hydrog
WATSON-CRICK
B
DA
7
A
N1
DA
7
1_555
D
DT
116
C
N3
DT
16
1_555
hydrog
WATSON-CRICK
B
DA
7
A
N6
DA
7
1_555
D
DT
116
C
O4
DT
16
1_555
hydrog
WATSON-CRICK
B
DC
8
A
N3
DC
8
1_555
D
DG
115
C
N1
DG
15
1_555
hydrog
WATSON-CRICK
B
DC
8
A
N4
DC
8
1_555
D
DG
115
C
O6
DG
15
1_555
hydrog
WATSON-CRICK
B
DC
8
A
O2
DC
8
1_555
D
DG
115
C
N2
DG
15
1_555
hydrog
WATSON-CRICK
B
DT
9
A
N3
DT
9
1_555
D
DA
114
C
N1
DA
14
1_555
hydrog
WATSON-CRICK
B
DT
9
A
O4
DT
9
1_555
D
DA
114
C
N6
DA
14
1_555
hydrog
WATSON-CRICK
B
DT
10
A
N3
DT
10
1_555
D
DA
113
C
N1
DA
13
1_555
hydrog
WATSON-CRICK
B
DT
10
A
O4
DT
10
1_555
D
DA
113
C
N6
DA
13
1_555
hydrog
WATSON-CRICK
C
TGP
11
B
N1
TGP
1
1_555
D
DC
112
C
N3
DC
12
1_555
hydrog
WATSON-CRICK
C
TGP
11
B
N2
TGP
1
1_555
D
DC
112
C
O2
DC
12
1_555
hydrog
WATSON-CRICK
C
TGP
11
B
O6
TGP
1
1_555
D
DC
112
C
N4
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
12
B
N1
DG
2
1_555
D
DC
111
C
N3
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
12
B
N2
DG
2
1_555
D
DC
111
C
O2
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
12
B
O6
DG
2
1_555
D
DC
111
C
N4
DC
11
1_555
hydrog
WATSON-CRICK
C
DA
13
B
N1
DA
3
1_555
D
DT
110
C
N3
DT
10
1_555
hydrog
WATSON-CRICK
C
DA
13
B
N6
DA
3
1_555
D
DT
110
C
O4
DT
10
1_555
hydrog
WATSON-CRICK
C
DA
14
B
N1
DA
4
1_555
D
DT
109
C
N3
DT
9
1_555
hydrog
WATSON-CRICK
C
DA
14
B
N6
DA
4
1_555
D
DT
109
C
O4
DT
9
1_555
hydrog
WATSON-CRICK
C
DA
15
B
N1
DA
5
1_555
D
DT
108
C
N3
DT
8
1_555
hydrog
WATSON-CRICK
C
DA
15
B
N6
DA
5
1_555
D
DT
108
C
O4
DT
8
1_555
hydrog
WATSON-CRICK
C
DA
16
B
N1
DA
6
1_555
D
DT
107
C
N3
DT
7
1_555
hydrog
WATSON-CRICK
C
DA
16
B
N6
DA
6
1_555
D
DT
107
C
O4
DT
7
1_555
hydrog
WATSON-CRICK
C
DA
17
B
N1
DA
7
1_555
D
DT
106
C
N3
DT
6
1_555
hydrog
WATSON-CRICK
C
DA
17
B
N6
DA
7
1_555
D
DT
106
C
O4
DT
6
1_555
hydrog
WATSON-CRICK
C
DT
18
B
N3
DT
8
1_555
D
DA
105
C
N1
DA
5
1_555
hydrog
WATSON-CRICK
C
DT
18
B
O4
DT
8
1_555
D
DA
105
C
N6
DA
5
1_555
hydrog
WATSON-CRICK
C
DT
19
B
N3
DT
9
1_555
D
DA
104
C
N1
DA
4
1_555
hydrog
WATSON-CRICK
C
DT
19
B
O4
DT
9
1_555
D
DA
104
C
N6
DA
4
1_555
hydrog
WATSON-CRICK
C
DT
20
B
N3
DT
10
1_555
D
DA
103
C
N1
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
20
B
O4
DT
10
1_555
D
DA
103
C
N6
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
21
B
N3
DT
11
1_555
D
DA
102
C
N1
DA
2
1_555
hydrog
WATSON-CRICK
C
DT
21
B
O4
DT
11
1_555
D
DA
102
C
N6
DA
2
1_555
hydrog
WATSON-CRICK
C
DT
22
B
N3
DT
12
1_555
D
DA
101
C
N1
DA
1
1_555
hydrog
WATSON-CRICK
C
DT
22
B
O4
DT
12
1_555
D
DA
101
C
N6
DA
1
1_555
ISOMERASE/DNA
COMPLEX (ISOMERASE-DNA), DNA, TOPOISOMERASE I, DRUG, POISON, IDENOISOQUINOLINE, ISOMERASE-DNA complex
TOP1_HUMAN
UNP
4
174
P11387
KKPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA
EEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEK
LLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWL
VSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEK
EEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL
NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDA
KKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWC
KKWGVPIEKIYNKTQREKFAWAIDMADEDYEF
1SC7
PDB
1
1SC7
1SC7
PDB
2
1SC7
1SC7
PDB
3
1SC7
174
765
1SC7
174
765
P11387
A
1
1
592
1
10
1SC7
1
10
1SC7
B
2
1
10
11
22
1SC7
11
22
1SC7
C
3
1
12
101
122
1SC7
101
122
1SC7
D
4
1
22
1
TYR
MODIFIED RESIDUE
PTR
723
1SC7
A
P11387
UNP
723
550
3
3
4
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
220
D
LEU
47
A
GLU
221
D
GLU
48
A
PHE
340
D
PHE
167
A
MET
343
D
MET
170
A
HIS
346
D
HIS
173
A
ARG
349
D
ARG
176
A
LYS
245
D
LYS
72
A
MET
247
D
MET
74
A
PHE
240
D
PHE
67
A
TYR
242
D
TYR
69
A
CYS
300
D
CYS
127
A
ASP
301
D
ASP
128
A
GLU
403
D
GLU
230
A
ARG
405
D
ARG
232
A
ILE
383
D
ILE
210
A
ASN
385
D
ASN
212
A
VAL
414
D
VAL
241
A
THR
417
D
THR
244
A
ILE
424
D
ILE
251
A
ILE
427
D
ILE
254
A
ILE
512
D
ILE
339
A
HIS
515
D
HIS
342
A
VAL
524
D
VAL
351
A
LEU
530
D
LEU
357
A
ARG
536
D
ARG
363
A
PRO
542
D
PRO
369
BINDING SITE FOR RESIDUE M38 C 990
Software
7
BINDING SITE FOR RESIDUE PG4 A 911
Software
5
A
ALA
351
D
ALA
178
7
1_555
A
ASN
352
D
ASN
179
7
1_555
A
ARG
364
D
ARG
191
7
1_555
B
DT
10
A
DT
10
7
1_555
C
TGP
11
B
TGP
1
7
1_555
D
DC
112
C
DC
12
7
1_555
D
DA
113
C
DA
13
7
1_555
A
ASP
500
D
ASP
327
5
1_555
A
GLU
510
D
GLU
337
5
1_555
A
HIS
511
D
HIS
338
5
1_555
A
ASP
528
D
ASP
355
5
1_555
A
LEU
530
D
LEU
357
5
1_555
5
C 1 2 1