0.003832 0.000000 0.000466 0.000000 0.013394 0.000000 0.000000 0.000000 0.017521 0.00000 0.00000 0.00000 Staker, B.L. Feese, M.D. Cushman, M. Pommier, Y. Zembower, D. Stewart, L. Burgin, A.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 96.94 90.00 260.940 74.659 57.494 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C20 H15 N O4 333.337 4-(5,11-DIOXO-5H-INDENO[1,2-C]ISOQUINOLIN-6(11H)-YL)BUTANOATE non-polymer C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H18 O5 194.226 TETRAETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C9 H12 N O6 P 261.168 n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C10 H14 N5 O6 P S 363.287 n 5'-THIO-2'-DEOXY-GUANOSINE PHOSPHONIC ACID DNA linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Med.Chem. JMCMAR 0151 0022-2623 48 2336 2345 10.1021/jm049146p 15801827 Structures of three classes of anticancer agents bound to the human topoisomerase I-DNA covalent complex 2005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD SINGLE WAVELENGTH M x-ray 1 1.1 1.0 X25 NSLS 1.1 SYNCHROTRON NSLS BEAMLINE X25 3061.057 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3' 1 syn polymer 3716.518 5'-D(*(TGP)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3' 1 syn polymer 6690.362 5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*CP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3' 1 syn polymer 70248.023 DNA topoisomerase I 5.99.1.2 1 man polymer 333.337 4-(5,11-DIOXO-5H-INDENO[1,2-C]ISOQUINOLIN-6(11H)-YL)BUTANOATE 1 syn non-polymer 194.226 TETRAETHYLENE GLYCOL 1 syn non-polymer no no (DA)(DA)(DA)(DA)(DA)(DG)(DA)(DC)(DT)(DT) AAAAAGACTT B polydeoxyribonucleotide no yes (TGP)(DG)(DA)(DA)(DA)(DA)(DA)(DT)(DT)(DT)(DT)(DT) GGAAAAATTTTT C polydeoxyribonucleotide no no (DA)(DA)(DA)(DA)(DA)(DT)(DT)(DT)(DT)(DT)(DC)(DC)(DA)(DA)(DG)(DT)(DC)(DT)(DT)(DT) (DT)(DT) AAAAATTTTTCCAAGTCTTTTT D polydeoxyribonucleotide no yes KKPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA EEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEK LLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWL VSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEK EEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDA KKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLN(PTR)LDPRIT VAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF KKPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA EEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEK LLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWL VSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEK EEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDA KKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWC KKWGVPIEKIYNKTQREKFAWAIDMADEDYEF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo fall armyworm Spodoptera sample TOP1 9606 Homo sapiens 7108 Spodoptera frugiperda baculovirus 1 3.32 62.96 VAPOR DIFFUSION, SITTING DROP 6.4 PEG 8000, AMMONIUM SULFATE, MES, pH 6.4, VAPOR DIFFUSION, SITTING DROP, temperature 289K 289 PEG 8000 1 AMMONIUM SULFATE 1 MES 1 AMMONIUM SULFATE 2 MES 2 2.055 1 20 B 1 D 122 -2.832 B_DA1:DT122_D 1 -5.751 -0.986 0.242 -0.194 6.870 1 20 B 2 D 121 1.439 B_DA2:DT121_D 2 -13.424 0.577 0.309 -0.286 2.263 1 20 B 3 D 120 1.989 B_DA3:DT120_D 3 -9.613 0.489 0.335 -0.284 8.665 1 20 B 4 D 119 -1.198 B_DA4:DT119_D 4 -9.987 -0.205 0.501 -0.408 2.770 1 20 B 5 D 118 13.813 B_DA5:DT118_D 5 -10.301 0.780 0.371 -0.298 -11.678 1 19 B 6 D 117 1.474 B_DG6:DC117_D 6 -10.362 -0.215 -0.374 -0.147 2.558 1 20 B 7 D 116 1.463 B_DA7:DT116_D 7 -5.388 0.106 0.223 -0.215 7.389 1 19 B 8 D 115 -2.197 B_DC8:DG115_D 8 -9.733 -0.030 0.148 -0.044 -8.173 1 20 B 9 D 114 -1.967 B_DT9:DA114_D 9 -4.618 -0.645 0.352 -0.298 -3.321 1 20 B 10 D 113 3.198 B_DT10:DA113_D 10 -10.782 0.318 0.053 -0.438 -18.589 1 19 C 11 D 112 -3.543 C_TGP11:DC112_D 11 -0.295 -0.604 -0.809 -0.240 -1.070 1 19 C 12 D 111 7.147 C_DG12:DC111_D 12 -11.556 -0.603 -0.175 -0.216 5.977 1 20 C 13 D 110 3.854 C_DA13:DT110_D 13 -15.282 -0.148 0.236 -0.306 2.938 1 20 C 14 D 109 1.550 C_DA14:DT109_D 14 -15.675 0.743 0.103 -0.010 2.105 1 20 C 15 D 108 8.982 C_DA15:DT108_D 15 -18.450 0.146 0.108 -0.212 -0.881 1 20 C 16 D 107 1.878 C_DA16:DT107_D 16 -15.320 -0.048 0.100 -0.153 -5.553 1 20 C 17 D 106 13.468 C_DA17:DT106_D 17 -13.459 -0.350 0.134 -0.144 -2.485 1 20 C 18 D 105 1.351 C_DT18:DA105_D 18 -11.534 0.098 0.167 -0.186 -4.467 1 20 C 19 D 104 9.837 C_DT19:DA104_D 19 -9.418 0.142 0.215 -0.100 -1.849 1 20 C 20 D 103 -0.667 C_DT20:DA103_D 20 -13.129 -0.386 -0.021 -0.163 -11.077 1 20 C 21 D 102 4.428 C_DT21:DA102_D 21 -14.613 -0.858 0.312 0.067 -3.496 1 20 C 22 D 101 0.702 C_DT22:DA101_D 22 -10.719 -0.461 0.355 0.014 3.088 45.067 B B 1 2 0.025 D D 122 121 3.088 0.020 0.028 0.189 BB_DA1DA2:DT121DT122_DD 1 0.067 -0.088 45.067 0.245 -0.030 3.167 41.329 B B 2 3 -6.918 D D 121 120 3.202 -4.870 -0.559 0.372 BB_DA2DA3:DT120DT121_DD 2 -2.581 3.667 40.975 1.037 0.522 3.083 35.442 B B 3 4 -11.270 D D 120 119 3.023 -6.820 0.347 -0.601 BB_DA3DA4:DT119DT120_DD 3 0.027 -0.045 34.801 -0.043 -0.567 3.400 43.278 B B 4 5 -4.104 D D 119 118 3.375 -3.023 0.557 -0.072 BB_DA4DA5:DT118DT119_DD 4 2.847 -3.866 43.088 0.208 -0.467 3.572 30.202 B B 5 6 3.283 D D 118 117 3.684 1.704 -0.206 -0.697 BB_DA5DG6:DC117DT118_DD 5 4.427 -8.531 29.836 -1.723 1.399 2.894 33.104 B B 6 7 -1.366 D D 117 116 2.910 -0.774 -0.156 -0.243 BB_DG6DA7:DT116DC117_DD 6 -6.250 11.033 32.516 -0.311 -0.670 3.102 33.289 B B 7 8 -0.630 D D 116 115 3.091 -0.361 0.535 -1.058 BB_DA7DC8:DG115DT116_DD 7 0.024 -0.043 33.287 -1.790 -0.930 3.648 36.015 B B 8 9 -2.943 D D 115 114 3.607 -1.818 0.049 -0.945 BB_DC8DT9:DA114DG115_DD 8 1.593 -2.578 35.937 -1.242 0.172 3.073 38.023 B B 9 10 -2.059 D D 114 113 3.100 -1.340 -0.410 -0.655 BB_DT9DT10:DA113DA114_DD 9 3.476 -5.342 37.847 -0.843 1.047 3.217 32.057 C C 11 12 13.569 D D 112 111 2.903 7.402 -1.374 0.978 CC_TGP11DG12:DC111DC112_DD 10 -4.771 8.745 30.855 0.499 1.669 2.956 40.569 C C 12 13 1.975 D D 111 110 2.941 1.366 -0.164 0.565 CC_DG12DA13:DT110DC111_DD 11 -5.106 7.383 40.237 0.677 -0.278 3.268 40.546 C C 13 14 0.035 D D 110 109 3.258 0.024 -0.356 0.161 CC_DA13DA14:DT109DT110_DD 12 -1.251 1.806 40.528 0.229 0.375 3.235 38.115 C C 14 15 -4.914 D D 109 108 3.206 -3.205 0.368 -0.337 CC_DA14DA15:DT108DT109_DD 13 1.649 -2.529 37.950 -0.116 -0.358 3.265 34.692 C C 15 16 -2.935 D D 108 107 3.268 -1.749 -0.170 0.050 CC_DA15DA16:DT107DT108_DD 14 -1.034 1.736 34.634 0.353 0.127 3.261 36.291 C C 16 17 -3.698 D D 107 106 3.251 -2.302 0.345 -0.147 CC_DA16DA17:DT106DT107_DD 15 0.840 -1.349 36.211 0.085 -0.437 3.159 35.417 C C 17 18 -2.570 D D 106 105 3.137 -1.563 -0.118 -0.652 CC_DA17DT18:DA105DT106_DD 16 0.755 -1.241 35.376 -0.851 0.301 3.270 38.773 C C 18 19 -5.474 D D 105 104 3.286 -3.628 0.646 0.285 CC_DT18DT19:DA104DA105_DD 17 1.652 -2.493 38.575 0.874 -0.771 3.063 34.412 C C 19 20 -6.200 D D 104 103 3.089 -3.661 -0.648 -0.117 CC_DT19DT20:DA103DA104_DD 18 1.071 -1.814 34.206 0.340 1.252 3.397 41.016 C C 20 21 -5.295 D D 103 102 3.387 -3.705 -0.014 -0.261 CC_DT20DT21:DA102DA103_DD 19 -0.340 0.486 40.854 0.046 -0.019 3.110 39.387 C C 21 22 1.532 D D 102 101 3.129 1.031 0.208 0.081 CC_DT21DT22:DA101DA102_DD 20 -2.659 3.949 39.288 0.003 -0.609 repository Initial release Version format compliance Version format compliance 1 0 2005-04-19 1 1 2008-04-29 1 2 2011-07-13 Human DNA Topoisomerase I (70 Kda) In Complex With The Poison Topotecan and Covalent Complex With A 22 Base Pair DNA Duplex Human DNA Topoisomerase I In Covalent Complex With A 22 Base Pair DNA Duplex RCSB Y RCSB 2004-02-11 REL M38 4-(5,11-DIOXO-5H-INDENO[1,2-C]ISOQUINOLIN-6(11H)-YL)BUTANOATE PG4 TETRAETHYLENE GLYCOL M38 990 5 M38 M38 990 C PG4 911 6 PG4 PG4 911 A A 1 n 1 DA 1 B A 2 n 2 DA 2 B A 3 n 3 DA 3 B A 4 n 4 DA 4 B A 5 n 5 DA 5 B G 6 n 6 DG 6 B A 7 n 7 DA 7 B C 8 n 8 DC 8 B T 9 n 9 DT 9 B T 10 n 10 DT 10 B TGP 11 n 1 TGP 11 C G 12 n 2 DG 12 C A 13 n 3 DA 13 C A 14 n 4 DA 14 C A 15 n 5 DA 15 C A 16 n 6 DA 16 C A 17 n 7 DA 17 C T 18 n 8 DT 18 C T 19 n 9 DT 19 C T 20 n 10 DT 20 C T 21 n 11 DT 21 C T 22 n 12 DT 22 C A 101 n 1 DA 101 D A 102 n 2 DA 102 D A 103 n 3 DA 103 D A 104 n 4 DA 104 D A 105 n 5 DA 105 D T 106 n 6 DT 106 D T 107 n 7 DT 107 D T 108 n 8 DT 108 D T 109 n 9 DT 109 D T 110 n 10 DT 110 D C 111 n 11 DC 111 D C 112 n 12 DC 112 D A 113 n 13 DA 113 D A 114 n 14 DA 114 D G 115 n 15 DG 115 D T 116 n 16 DT 116 D C 117 n 17 DC 117 D T 118 n 18 DT 118 D T 119 n 19 DT 119 D T 120 n 20 DT 120 D T 121 n 21 DT 121 D T 122 n 22 DT 122 D n 1 174 A n 2 175 A n 3 176 A n 4 177 A n 5 178 A n 6 179 A n 7 180 A n 8 181 A n 9 182 A n 10 183 A n 11 184 A n 12 185 A n 13 186 A n 14 187 A n 15 188 A n 16 189 A n 17 190 A n 18 191 A n 19 192 A n 20 193 A n 21 194 A n 22 195 A n 23 196 A n 24 197 A n 25 198 A ALA 199 n 26 GLU 199 A ALA 200 n 27 GLU 200 A ALA 201 n 28 GLN 201 A ALA 202 n 29 LYS 202 A TRP 203 n 30 TRP 203 A LYS 204 n 31 LYS 204 A TRP 205 n 32 TRP 205 A TRP 206 n 33 TRP 206 A GLU 207 n 34 GLU 207 A GLU 208 n 35 GLU 208 A GLU 209 n 36 GLU 209 A ARG 210 n 37 ARG 210 A TYR 211 n 38 TYR 211 A PRO 212 n 39 PRO 212 A GLU 213 n 40 GLU 213 A GLY 214 n 41 GLY 214 A ILE 215 n 42 ILE 215 A LYS 216 n 43 LYS 216 A TRP 217 n 44 TRP 217 A LYS 218 n 45 LYS 218 A PHE 219 n 46 PHE 219 A LEU 220 n 47 LEU 220 A GLU 221 n 48 GLU 221 A HIS 222 n 49 HIS 222 A LYS 223 n 50 LYS 223 A GLY 224 n 51 GLY 224 A PRO 225 n 52 PRO 225 A VAL 226 n 53 VAL 226 A PHE 227 n 54 PHE 227 A ALA 228 n 55 ALA 228 A PRO 229 n 56 PRO 229 A PRO 230 n 57 PRO 230 A TYR 231 n 58 TYR 231 A GLU 232 n 59 GLU 232 A PRO 233 n 60 PRO 233 A LEU 234 n 61 LEU 234 A PRO 235 n 62 PRO 235 A GLU 236 n 63 GLU 236 A ASN 237 n 64 ASN 237 A VAL 238 n 65 VAL 238 A LYS 239 n 66 LYS 239 A PHE 240 n 67 PHE 240 A TYR 241 n 68 TYR 241 A TYR 242 n 69 TYR 242 A ASP 243 n 70 ASP 243 A GLY 244 n 71 GLY 244 A LYS 245 n 72 LYS 245 A VAL 246 n 73 VAL 246 A MET 247 n 74 MET 247 A LYS 248 n 75 LYS 248 A LEU 249 n 76 LEU 249 A SER 250 n 77 SER 250 A PRO 251 n 78 PRO 251 A LYS 252 n 79 LYS 252 A ALA 253 n 80 ALA 253 A GLU 254 n 81 GLU 254 A GLU 255 n 82 GLU 255 A VAL 256 n 83 VAL 256 A ALA 257 n 84 ALA 257 A THR 258 n 85 THR 258 A PHE 259 n 86 PHE 259 A PHE 260 n 87 PHE 260 A ALA 261 n 88 ALA 261 A LYS 262 n 89 LYS 262 A MET 263 n 90 MET 263 A LEU 264 n 91 LEU 264 A ASP 265 n 92 ASP 265 A HIS 266 n 93 HIS 266 A GLU 267 n 94 GLU 267 A TYR 268 n 95 TYR 268 A THR 269 n 96 THR 269 A THR 270 n 97 THR 270 A LYS 271 n 98 LYS 271 A GLU 272 n 99 GLU 272 A ILE 273 n 100 ILE 273 A PHE 274 n 101 PHE 274 A ARG 275 n 102 ARG 275 A LYS 276 n 103 LYS 276 A ASN 277 n 104 ASN 277 A PHE 278 n 105 PHE 278 A PHE 279 n 106 PHE 279 A LYS 280 n 107 LYS 280 A ASP 281 n 108 ASP 281 A TRP 282 n 109 TRP 282 A ARG 283 n 110 ARG 283 A LYS 284 n 111 LYS 284 A GLU 285 n 112 GLU 285 A MET 286 n 113 MET 286 A THR 287 n 114 THR 287 A ASN 288 n 115 ASN 288 A GLU 289 n 116 GLU 289 A GLU 290 n 117 GLU 290 A LYS 291 n 118 LYS 291 A ASN 292 n 119 ASN 292 A ILE 293 n 120 ILE 293 A ILE 294 n 121 ILE 294 A THR 295 n 122 THR 295 A ASN 296 n 123 ASN 296 A LEU 297 n 124 LEU 297 A SER 298 n 125 SER 298 A LYS 299 n 126 LYS 299 A CYS 300 n 127 CYS 300 A ASP 301 n 128 ASP 301 A PHE 302 n 129 PHE 302 A THR 303 n 130 THR 303 A GLN 304 n 131 GLN 304 A MET 305 n 132 MET 305 A SER 306 n 133 SER 306 A GLN 307 n 134 GLN 307 A TYR 308 n 135 TYR 308 A PHE 309 n 136 PHE 309 A LYS 310 n 137 LYS 310 A ALA 311 n 138 ALA 311 A GLN 312 n 139 GLN 312 A THR 313 n 140 THR 313 A GLU 314 n 141 GLU 314 A ALA 315 n 142 ALA 315 A ARG 316 n 143 ARG 316 A LYS 317 n 144 LYS 317 A GLN 318 n 145 GLN 318 A MET 319 n 146 MET 319 A SER 320 n 147 SER 320 A LYS 321 n 148 LYS 321 A GLU 322 n 149 GLU 322 A GLU 323 n 150 GLU 323 A LYS 324 n 151 LYS 324 A LEU 325 n 152 LEU 325 A LYS 326 n 153 LYS 326 A ILE 327 n 154 ILE 327 A LYS 328 n 155 LYS 328 A GLU 329 n 156 GLU 329 A GLU 330 n 157 GLU 330 A ASN 331 n 158 ASN 331 A GLU 332 n 159 GLU 332 A LYS 333 n 160 LYS 333 A LEU 334 n 161 LEU 334 A LEU 335 n 162 LEU 335 A LYS 336 n 163 LYS 336 A GLU 337 n 164 GLU 337 A TYR 338 n 165 TYR 338 A GLY 339 n 166 GLY 339 A PHE 340 n 167 PHE 340 A CYS 341 n 168 CYS 341 A ILE 342 n 169 ILE 342 A MET 343 n 170 MET 343 A ASP 344 n 171 ASP 344 A ASN 345 n 172 ASN 345 A HIS 346 n 173 HIS 346 A LYS 347 n 174 LYS 347 A GLU 348 n 175 GLU 348 A ARG 349 n 176 ARG 349 A ILE 350 n 177 ILE 350 A ALA 351 n 178 ALA 351 A ASN 352 n 179 ASN 352 A PHE 353 n 180 PHE 353 A LYS 354 n 181 LYS 354 A ILE 355 n 182 ILE 355 A GLU 356 n 183 GLU 356 A PRO 357 n 184 PRO 357 A PRO 358 n 185 PRO 358 A GLY 359 n 186 GLY 359 A LEU 360 n 187 LEU 360 A PHE 361 n 188 PHE 361 A ARG 362 n 189 ARG 362 A GLY 363 n 190 GLY 363 A ARG 364 n 191 ARG 364 A GLY 365 n 192 GLY 365 A ASN 366 n 193 ASN 366 A HIS 367 n 194 HIS 367 A PRO 368 n 195 PRO 368 A LYS 369 n 196 LYS 369 A MET 370 n 197 MET 370 A GLY 371 n 198 GLY 371 A MET 372 n 199 MET 372 A LEU 373 n 200 LEU 373 A LYS 374 n 201 LYS 374 A ARG 375 n 202 ARG 375 A ARG 376 n 203 ARG 376 A ILE 377 n 204 ILE 377 A MET 378 n 205 MET 378 A PRO 379 n 206 PRO 379 A GLU 380 n 207 GLU 380 A ASP 381 n 208 ASP 381 A ILE 382 n 209 ILE 382 A ILE 383 n 210 ILE 383 A ILE 384 n 211 ILE 384 A ASN 385 n 212 ASN 385 A CYS 386 n 213 CYS 386 A SER 387 n 214 SER 387 A LYS 388 n 215 LYS 388 A ASP 389 n 216 ASP 389 A ALA 390 n 217 ALA 390 A LYS 391 n 218 LYS 391 A VAL 392 n 219 VAL 392 A PRO 393 n 220 PRO 393 A SER 394 n 221 SER 394 A PRO 395 n 222 PRO 395 A PRO 396 n 223 PRO 396 A PRO 397 n 224 PRO 397 A GLY 398 n 225 GLY 398 A HIS 399 n 226 HIS 399 A LYS 400 n 227 LYS 400 A TRP 401 n 228 TRP 401 A LYS 402 n 229 LYS 402 A GLU 403 n 230 GLU 403 A VAL 404 n 231 VAL 404 A ARG 405 n 232 ARG 405 A HIS 406 n 233 HIS 406 A ASP 407 n 234 ASP 407 A ASN 408 n 235 ASN 408 A LYS 409 n 236 LYS 409 A VAL 410 n 237 VAL 410 A THR 411 n 238 THR 411 A TRP 412 n 239 TRP 412 A LEU 413 n 240 LEU 413 A VAL 414 n 241 VAL 414 A SER 415 n 242 SER 415 A TRP 416 n 243 TRP 416 A THR 417 n 244 THR 417 A GLU 418 n 245 GLU 418 A ASN 419 n 246 ASN 419 A ILE 420 n 247 ILE 420 A GLN 421 n 248 GLN 421 A GLY 422 n 249 GLY 422 A SER 423 n 250 SER 423 A ILE 424 n 251 ILE 424 A LYS 425 n 252 LYS 425 A TYR 426 n 253 TYR 426 A ILE 427 n 254 ILE 427 A MET 428 n 255 MET 428 A LEU 429 n 256 LEU 429 A ASN 430 n 257 ASN 430 A PRO 431 n 258 PRO 431 A SER 432 n 259 SER 432 A SER 433 n 260 SER 433 A ARG 434 n 261 ARG 434 A ILE 435 n 262 ILE 435 A LYS 436 n 263 LYS 436 A GLY 437 n 264 GLY 437 A GLU 438 n 265 GLU 438 A LYS 439 n 266 LYS 439 A ASP 440 n 267 ASP 440 A TRP 441 n 268 TRP 441 A GLN 442 n 269 GLN 442 A LYS 443 n 270 LYS 443 A TYR 444 n 271 TYR 444 A GLU 445 n 272 GLU 445 A THR 446 n 273 THR 446 A ALA 447 n 274 ALA 447 A ARG 448 n 275 ARG 448 A ARG 449 n 276 ARG 449 A LEU 450 n 277 LEU 450 A LYS 451 n 278 LYS 451 A LYS 452 n 279 LYS 452 A CYS 453 n 280 CYS 453 A VAL 454 n 281 VAL 454 A ASP 455 n 282 ASP 455 A LYS 456 n 283 LYS 456 A ILE 457 n 284 ILE 457 A ARG 458 n 285 ARG 458 A ASN 459 n 286 ASN 459 A GLN 460 n 287 GLN 460 A TYR 461 n 288 TYR 461 A ARG 462 n 289 ARG 462 A GLU 463 n 290 GLU 463 A ASP 464 n 291 ASP 464 A TRP 465 n 292 TRP 465 A LYS 466 n 293 LYS 466 A SER 467 n 294 SER 467 A LYS 468 n 295 LYS 468 A GLU 469 n 296 GLU 469 A MET 470 n 297 MET 470 A LYS 471 n 298 LYS 471 A VAL 472 n 299 VAL 472 A ARG 473 n 300 ARG 473 A GLN 474 n 301 GLN 474 A ARG 475 n 302 ARG 475 A ALA 476 n 303 ALA 476 A VAL 477 n 304 VAL 477 A ALA 478 n 305 ALA 478 A LEU 479 n 306 LEU 479 A TYR 480 n 307 TYR 480 A PHE 481 n 308 PHE 481 A ILE 482 n 309 ILE 482 A ASP 483 n 310 ASP 483 A LYS 484 n 311 LYS 484 A LEU 485 n 312 LEU 485 A ALA 486 n 313 ALA 486 A LEU 487 n 314 LEU 487 A ARG 488 n 315 ARG 488 A ALA 489 n 316 ALA 489 A GLY 490 n 317 GLY 490 A ASN 491 n 318 ASN 491 A GLU 492 n 319 GLU 492 A LYS 493 n 320 LYS 493 A GLU 494 n 321 GLU 494 A GLU 495 n 322 GLU 495 A GLY 496 n 323 GLY 496 A GLU 497 n 324 GLU 497 A THR 498 n 325 THR 498 A ALA 499 n 326 ALA 499 A ASP 500 n 327 ASP 500 A THR 501 n 328 THR 501 A VAL 502 n 329 VAL 502 A GLY 503 n 330 GLY 503 A CYS 504 n 331 CYS 504 A CYS 505 n 332 CYS 505 A SER 506 n 333 SER 506 A LEU 507 n 334 LEU 507 A ARG 508 n 335 ARG 508 A VAL 509 n 336 VAL 509 A GLU 510 n 337 GLU 510 A HIS 511 n 338 HIS 511 A ILE 512 n 339 ILE 512 A ASN 513 n 340 ASN 513 A LEU 514 n 341 LEU 514 A HIS 515 n 342 HIS 515 A PRO 516 n 343 PRO 516 A GLU 517 n 344 GLU 517 A LEU 518 n 345 LEU 518 A ASP 519 n 346 ASP 519 A GLY 520 n 347 GLY 520 A GLN 521 n 348 GLN 521 A GLU 522 n 349 GLU 522 A TYR 523 n 350 TYR 523 A VAL 524 n 351 VAL 524 A VAL 525 n 352 VAL 525 A GLU 526 n 353 GLU 526 A PHE 527 n 354 PHE 527 A ASP 528 n 355 ASP 528 A PHE 529 n 356 PHE 529 A LEU 530 n 357 LEU 530 A GLY 531 n 358 GLY 531 A LYS 532 n 359 LYS 532 A ASP 533 n 360 ASP 533 A SER 534 n 361 SER 534 A ILE 535 n 362 ILE 535 A ARG 536 n 363 ARG 536 A TYR 537 n 364 TYR 537 A TYR 538 n 365 TYR 538 A ASN 539 n 366 ASN 539 A LYS 540 n 367 LYS 540 A VAL 541 n 368 VAL 541 A PRO 542 n 369 PRO 542 A VAL 543 n 370 VAL 543 A GLU 544 n 371 GLU 544 A LYS 545 n 372 LYS 545 A ARG 546 n 373 ARG 546 A VAL 547 n 374 VAL 547 A PHE 548 n 375 PHE 548 A LYS 549 n 376 LYS 549 A ASN 550 n 377 ASN 550 A LEU 551 n 378 LEU 551 A GLN 552 n 379 GLN 552 A LEU 553 n 380 LEU 553 A PHE 554 n 381 PHE 554 A MET 555 n 382 MET 555 A GLU 556 n 383 GLU 556 A ASN 557 n 384 ASN 557 A LYS 558 n 385 LYS 558 A GLN 559 n 386 GLN 559 A PRO 560 n 387 PRO 560 A GLU 561 n 388 GLU 561 A ASP 562 n 389 ASP 562 A ASP 563 n 390 ASP 563 A LEU 564 n 391 LEU 564 A PHE 565 n 392 PHE 565 A ASP 566 n 393 ASP 566 A ARG 567 n 394 ARG 567 A LEU 568 n 395 LEU 568 A ASN 569 n 396 ASN 569 A THR 570 n 397 THR 570 A GLY 571 n 398 GLY 571 A ILE 572 n 399 ILE 572 A LEU 573 n 400 LEU 573 A ASN 574 n 401 ASN 574 A LYS 575 n 402 LYS 575 A HIS 576 n 403 HIS 576 A LEU 577 n 404 LEU 577 A GLN 578 n 405 GLN 578 A ASP 579 n 406 ASP 579 A LEU 580 n 407 LEU 580 A MET 581 n 408 MET 581 A GLU 582 n 409 GLU 582 A GLY 583 n 410 GLY 583 A LEU 584 n 411 LEU 584 A THR 585 n 412 THR 585 A ALA 586 n 413 ALA 586 A LYS 587 n 414 LYS 587 A VAL 588 n 415 VAL 588 A PHE 589 n 416 PHE 589 A ARG 590 n 417 ARG 590 A THR 591 n 418 THR 591 A TYR 592 n 419 TYR 592 A ASN 593 n 420 ASN 593 A ALA 594 n 421 ALA 594 A SER 595 n 422 SER 595 A ILE 596 n 423 ILE 596 A THR 597 n 424 THR 597 A LEU 598 n 425 LEU 598 A GLN 599 n 426 GLN 599 A GLN 600 n 427 GLN 600 A GLN 601 n 428 GLN 601 A LEU 602 n 429 LEU 602 A LYS 603 n 430 LYS 603 A GLU 604 n 431 GLU 604 A LEU 605 n 432 LEU 605 A THR 606 n 433 THR 606 A ALA 607 n 434 ALA 607 A PRO 608 n 435 PRO 608 A ASP 609 n 436 ASP 609 A GLU 610 n 437 GLU 610 A ASN 611 n 438 ASN 611 A ILE 612 n 439 ILE 612 A PRO 613 n 440 PRO 613 A ALA 614 n 441 ALA 614 A LYS 615 n 442 LYS 615 A ILE 616 n 443 ILE 616 A LEU 617 n 444 LEU 617 A SER 618 n 445 SER 618 A TYR 619 n 446 TYR 619 A ASN 620 n 447 ASN 620 A ARG 621 n 448 ARG 621 A ALA 622 n 449 ALA 622 A ASN 623 n 450 ASN 623 A ARG 624 n 451 ARG 624 A ALA 625 n 452 ALA 625 A VAL 626 n 453 VAL 626 A ALA 627 n 454 ALA 627 A ILE 628 n 455 ILE 628 A LEU 629 n 456 LEU 629 A CYS 630 n 457 CYS 630 A ASN 631 n 458 ASN 631 A HIS 632 n 459 HIS 632 A GLN 633 n 460 GLN 633 A ALA 634 n 461 ARG 634 A ALA 635 n 462 ALA 635 A PRO 636 n 463 PRO 636 A PRO 637 n 464 PRO 637 A LYS 638 n 465 LYS 638 A THR 639 n 466 THR 639 A PHE 640 n 467 PHE 640 A GLU 641 n 468 GLU 641 A LYS 642 n 469 LYS 642 A SER 643 n 470 SER 643 A MET 644 n 471 MET 644 A MET 645 n 472 MET 645 A ASN 646 n 473 ASN 646 A LEU 647 n 474 LEU 647 A GLN 648 n 475 GLN 648 A THR 649 n 476 THR 649 A LYS 650 n 477 LYS 650 A ILE 651 n 478 ILE 651 A ASP 652 n 479 ASP 652 A ALA 653 n 480 ALA 653 A LYS 654 n 481 LYS 654 A LYS 655 n 482 LYS 655 A GLU 656 n 483 GLU 656 A GLN 657 n 484 GLN 657 A LEU 658 n 485 LEU 658 A ALA 659 n 486 ALA 659 A ASP 660 n 487 ASP 660 A ALA 661 n 488 ALA 661 A ARG 662 n 489 ARG 662 A ARG 663 n 490 ARG 663 A ASP 664 n 491 ASP 664 A LEU 665 n 492 LEU 665 A LYS 666 n 493 LYS 666 A SER 667 n 494 SER 667 A ALA 668 n 495 ALA 668 A LYS 669 n 496 LYS 669 A ALA 670 n 497 ALA 670 A ASP 671 n 498 ASP 671 A ALA 672 n 499 ALA 672 A LYS 673 n 500 LYS 673 A VAL 674 n 501 VAL 674 A MET 675 n 502 MET 675 A LYS 676 n 503 LYS 676 A ASP 677 n 504 ASP 677 A ALA 678 n 505 ALA 678 A LYS 679 n 506 LYS 679 A THR 680 n 507 THR 680 A LYS 681 n 508 LYS 681 A LYS 682 n 509 LYS 682 A VAL 683 n 510 VAL 683 A VAL 684 n 511 VAL 684 A GLU 685 n 512 GLU 685 A SER 686 n 513 SER 686 A LYS 687 n 514 LYS 687 A LYS 688 n 515 LYS 688 A LYS 689 n 516 LYS 689 A ALA 690 n 517 ALA 690 A VAL 691 n 518 VAL 691 A GLN 692 n 519 GLN 692 A ARG 693 n 520 ARG 693 A LEU 694 n 521 LEU 694 A GLU 695 n 522 GLU 695 A GLU 696 n 523 GLU 696 A GLN 697 n 524 GLN 697 A LEU 698 n 525 LEU 698 A MET 699 n 526 MET 699 A LYS 700 n 527 LYS 700 A LEU 701 n 528 LEU 701 A GLU 702 n 529 GLU 702 A VAL 703 n 530 VAL 703 A GLN 704 n 531 GLN 704 A ALA 705 n 532 ALA 705 A THR 706 n 533 THR 706 A ASP 707 n 534 ASP 707 A ARG 708 n 535 ARG 708 A GLU 709 n 536 GLU 709 A GLU 710 n 537 GLU 710 A ASN 711 n 538 ASN 711 A LYS 712 n 539 LYS 712 A GLN 713 n 540 GLN 713 A ILE 714 n 541 ILE 714 A ALA 715 n 542 ALA 715 A LEU 716 n 543 LEU 716 A GLY 717 n 544 GLY 717 A THR 718 n 545 THR 718 A SER 719 n 546 SER 719 A LYS 720 n 547 LYS 720 A LEU 721 n 548 LEU 721 A ASN 722 n 549 ASN 722 A PTR 723 n 550 PTR 723 A LEU 724 n 551 LEU 724 A ASP 725 n 552 ASP 725 A PRO 726 n 553 PRO 726 A ARG 727 n 554 ARG 727 A ILE 728 n 555 ILE 728 A THR 729 n 556 THR 729 A VAL 730 n 557 VAL 730 A ALA 731 n 558 ALA 731 A TRP 732 n 559 TRP 732 A CYS 733 n 560 CYS 733 A LYS 734 n 561 LYS 734 A LYS 735 n 562 LYS 735 A TRP 736 n 563 TRP 736 A GLY 737 n 564 GLY 737 A VAL 738 n 565 VAL 738 A PRO 739 n 566 PRO 739 A ILE 740 n 567 ILE 740 A GLU 741 n 568 GLU 741 A LYS 742 n 569 LYS 742 A ILE 743 n 570 ILE 743 A TYR 744 n 571 TYR 744 A ASN 745 n 572 ASN 745 A LYS 746 n 573 LYS 746 A THR 747 n 574 THR 747 A GLN 748 n 575 GLN 748 A ARG 749 n 576 ARG 749 A GLU 750 n 577 GLU 750 A LYS 751 n 578 LYS 751 A PHE 752 n 579 PHE 752 A ALA 753 n 580 ALA 753 A TRP 754 n 581 TRP 754 A ALA 755 n 582 ALA 755 A ILE 756 n 583 ILE 756 A ASP 757 n 584 ASP 757 A MET 758 n 585 MET 758 A ALA 759 n 586 ALA 759 A ASP 760 n 587 ASP 760 A GLU 761 n 588 GLU 761 A ASP 762 n 589 ASP 762 A TYR 763 n 590 TYR 763 A GLU 764 n 591 GLU 764 A PHE 765 n 592 PHE 765 A author_defined_assembly 4 tetrameric C TGP 11 B TGP 1 DG A PTR 723 O-PHOSPHOTYROSINE D PTR 550 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 221 D N GLU 48 A O ILE 342 D O ILE 169 A N MET 343 D N MET 170 A O HIS 346 D O HIS 173 A O LYS 245 D O LYS 72 A N TYR 242 D N TYR 69 A N TYR 241 D N TYR 68 A O ASP 301 D O ASP 128 A O ARG 405 D O ARG 232 A N ILE 384 D N ILE 211 A N ILE 383 D N ILE 210 A O SER 415 D O SER 242 A N TRP 416 D N TRP 243 A O LYS 425 D O LYS 252 A N ASN 513 D N ASN 340 A O GLU 526 D O GLU 353 A N PHE 529 D N PHE 356 A O TYR 537 D O TYR 364 1 A CG GLU 199 D CG GLU 26 1 Y 1 A CD GLU 199 D CD GLU 26 1 Y 1 A OE1 GLU 199 D OE1 GLU 26 1 Y 1 A OE2 GLU 199 D OE2 GLU 26 1 Y 1 A CG GLU 200 D CG GLU 27 1 Y 1 A CD GLU 200 D CD GLU 27 1 Y 1 A OE1 GLU 200 D OE1 GLU 27 1 Y 1 A OE2 GLU 200 D OE2 GLU 27 1 Y 1 A CG GLN 201 D CG GLN 28 1 Y 1 A CD GLN 201 D CD GLN 28 1 Y 1 A OE1 GLN 201 D OE1 GLN 28 1 Y 1 A NE2 GLN 201 D NE2 GLN 28 1 Y 1 A CG LYS 202 D CG LYS 29 1 Y 1 A CD LYS 202 D CD LYS 29 1 Y 1 A CE LYS 202 D CE LYS 29 1 Y 1 A NZ LYS 202 D NZ LYS 29 1 Y 1 A CG ARG 634 D CG ARG 461 1 Y 1 A CD ARG 634 D CD ARG 461 1 Y 1 A NE ARG 634 D NE ARG 461 1 Y 1 A CZ ARG 634 D CZ ARG 461 1 Y 1 A NH1 ARG 634 D NH1 ARG 461 1 Y 1 A NH2 ARG 634 D NH2 ARG 461 1 Y 1 A LYS 174 D LYS 1 1 Y 1 A LYS 175 D LYS 2 1 Y 1 A PRO 176 D PRO 3 1 Y 1 A LYS 177 D LYS 4 1 Y 1 A ASN 178 D ASN 5 1 Y 1 A LYS 179 D LYS 6 1 Y 1 A ASP 180 D ASP 7 1 Y 1 A LYS 181 D LYS 8 1 Y 1 A ASP 182 D ASP 9 1 Y 1 A LYS 183 D LYS 10 1 Y 1 A LYS 184 D LYS 11 1 Y 1 A VAL 185 D VAL 12 1 Y 1 A PRO 186 D PRO 13 1 Y 1 A GLU 187 D GLU 14 1 Y 1 A PRO 188 D PRO 15 1 Y 1 A ASP 189 D ASP 16 1 Y 1 A ASN 190 D ASN 17 1 Y 1 A LYS 191 D LYS 18 1 Y 1 A LYS 192 D LYS 19 1 Y 1 A LYS 193 D LYS 20 1 Y 1 A LYS 194 D LYS 21 1 Y 1 A PRO 195 D PRO 22 1 Y 1 A LYS 196 D LYS 23 1 Y 1 A LYS 197 D LYS 24 1 Y 1 A GLU 198 D GLU 25 1 Y 1 D DC 112 0.085 SIDE CHAIN 1 9.41 1.50 119.30 128.71 A A A C N CA ALA PRO PRO 635 636 636 Y 1 A GLN 201 -109.27 -65.17 1 A LYS 202 68.48 94.35 1 A LYS 204 -111.59 73.98 1 A GLU 213 -5.21 119.00 1 A ASP 344 52.84 76.33 1 A ASN 345 62.73 -0.56 1 A ARG 362 -134.98 -57.21 1 A ARG 375 54.87 136.14 1 A PRO 397 -31.84 118.02 1 A HIS 406 -115.92 77.88 1 A ASP 500 -63.43 92.05 1 A GLU 517 -105.31 -128.77 1 A LEU 518 64.73 139.57 1 A ASP 519 65.24 -0.26 1 A ASN 557 38.77 49.78 1 A PHE 565 -100.76 65.63 1 A ILE 628 -102.75 61.64 1 A LEU 629 -172.03 -53.61 1 A ARG 634 65.89 114.57 1 A PRO 636 9.56 70.55 1 A GLU 641 -171.90 -43.58 1 A LYS 676 49.26 157.98 1 A ALA 678 65.19 -64.80 1 A THR 680 71.91 39.02 1 A ASN 711 -105.74 45.26 1 A ILE 743 -131.27 -62.49 1 A ALA 759 45.12 107.56 PROTEIN.PARAM PROTEIN.TOP DNA-RNA.PARAM DNA-RNA.TOP WATER_REP.PAR WATER_REP.TOP ION.PARAM ION.TOP M38_PAR.PAR M38_TOP.TOP 43.8 -4.90 0.00 -0.33 18.44 0.00 -13.54 0.285 0.007 0.233 3.00 19.85 1908 19449 9.8 87.9 RANDOM 1029408.66 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT FLAT MODEL 10 0.314251 0.48 0.36 5.00 0.43 0.33 3.00 19.85 0 5629 38 892 4699 0.011 1.6 25.6 6.18 1.65 1.50 2.89 2.00 2.70 2.00 4.55 2.50 0.407 0.026 0.325 3.19 250 2432 6 9.3 73.1 3.0 20 1SC7 18923 0.096 1 15.1 90.1 3.00 3.08 2.3 1224 0.327 32.7 refinement CNX 2002 data reduction HKL-2000 data scaling SCALEPACK phasing AMoRE DNA topoisomerase I/5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3' Human DNA Topoisomerase I (70 Kda) In Complex With The Indenoisoquinoline MJ-II-38 and Covalent Complex With A 22 Base Pair DNA Duplex 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N A SER 250 D SER 77 HELX_P A LEU 264 D LEU 91 1 1 15 A GLU 267 D GLU 94 HELX_P A THR 270 D THR 97 5 2 4 A LYS 271 D LYS 98 HELX_P A GLU 285 D GLU 112 1 3 15 A THR 287 D THR 114 HELX_P A ILE 294 D ILE 121 1 4 8 A ASN 296 D ASN 123 HELX_P A SER 298 D SER 125 5 5 3 A GLN 304 D GLN 131 HELX_P A ALA 315 D ALA 142 1 6 12 A SER 320 D SER 147 HELX_P A LEU 325 D LEU 152 1 7 6 A LYS 326 D LYS 153 HELX_P A TYR 338 D TYR 165 1 8 13 A MET 378 D MET 205 HELX_P A ASP 381 D ASP 208 5 9 4 A SER 433 D SER 260 HELX_P A LYS 452 D LYS 279 1 10 20 A CYS 453 D CYS 280 HELX_P A ASP 464 D ASP 291 1 11 12 A GLU 469 D GLU 296 HELX_P A LEU 485 D LEU 312 1 12 17 A LYS 532 D LYS 359 HELX_P A SER 534 D SER 361 5 13 3 A GLU 544 D GLU 371 HELX_P A GLU 556 D GLU 383 1 14 13 A ASN 569 D ASN 396 HELX_P A ASP 579 D ASP 406 1 15 11 A LYS 587 D LYS 414 HELX_P A LEU 605 D LEU 432 1 16 19 A ASN 611 D ASN 438 HELX_P A VAL 626 D VAL 453 1 17 16 A LEU 647 D LEU 474 HELX_P A LYS 650 D LYS 477 5 18 4 A ILE 651 D ILE 478 HELX_P A MET 675 D MET 502 1 19 25 A LYS 681 D LYS 508 HELX_P A LYS 687 D LYS 514 1 20 7 A LYS 688 D LYS 515 HELX_P A GLU 702 D GLU 529 1 21 15 A GLU 702 D GLU 529 HELX_P A GLU 710 D GLU 537 1 22 9 A LEU 716 D LEU 543 HELX_P A PTR 723 D PTR 550 1 23 8 A ASP 725 D ASP 552 HELX_P A LYS 734 D LYS 561 1 24 10 A PRO 739 D PRO 566 HELX_P A ILE 743 D ILE 570 5 25 5 A ASN 745 D ASN 572 HELX_P A PHE 752 D PHE 579 1 26 8 A PHE 752 D PHE 579 HELX_P A MET 758 D MET 585 1 27 7 covale 1.429 B DT 10 A C3' DT 10 1_555 A PTR 723 D O3P PTR 550 1_555 covale 1.332 A ASN 722 D C ASN 549 1_555 A PTR 723 D N PTR 550 1_555 covale 1.333 A PTR 723 D C PTR 550 1_555 A LEU 724 D N LEU 551 1_555 covale 1.612 C TGP 11 B O3' TGP 1 1_555 C DG 12 B P DG 2 1_555 hydrog WATSON-CRICK B DA 1 A N1 DA 1 1_555 D DT 122 C N3 DT 22 1_555 hydrog WATSON-CRICK B DA 1 A N6 DA 1 1_555 D DT 122 C O4 DT 22 1_555 hydrog WATSON-CRICK B DA 2 A N1 DA 2 1_555 D DT 121 C N3 DT 21 1_555 hydrog WATSON-CRICK B DA 2 A N6 DA 2 1_555 D DT 121 C O4 DT 21 1_555 hydrog WATSON-CRICK B DA 3 A N1 DA 3 1_555 D DT 120 C N3 DT 20 1_555 hydrog WATSON-CRICK B DA 3 A N6 DA 3 1_555 D DT 120 C O4 DT 20 1_555 hydrog WATSON-CRICK B DA 4 A N1 DA 4 1_555 D DT 119 C N3 DT 19 1_555 hydrog WATSON-CRICK B DA 4 A N6 DA 4 1_555 D DT 119 C O4 DT 19 1_555 hydrog WATSON-CRICK B DA 5 A N1 DA 5 1_555 D DT 118 C N3 DT 18 1_555 hydrog WATSON-CRICK B DA 5 A N6 DA 5 1_555 D DT 118 C O4 DT 18 1_555 hydrog WATSON-CRICK B DG 6 A N1 DG 6 1_555 D DC 117 C N3 DC 17 1_555 hydrog WATSON-CRICK B DG 6 A N2 DG 6 1_555 D DC 117 C O2 DC 17 1_555 hydrog WATSON-CRICK B DG 6 A O6 DG 6 1_555 D DC 117 C N4 DC 17 1_555 hydrog WATSON-CRICK B DA 7 A N1 DA 7 1_555 D DT 116 C N3 DT 16 1_555 hydrog WATSON-CRICK B DA 7 A N6 DA 7 1_555 D DT 116 C O4 DT 16 1_555 hydrog WATSON-CRICK B DC 8 A N3 DC 8 1_555 D DG 115 C N1 DG 15 1_555 hydrog WATSON-CRICK B DC 8 A N4 DC 8 1_555 D DG 115 C O6 DG 15 1_555 hydrog WATSON-CRICK B DC 8 A O2 DC 8 1_555 D DG 115 C N2 DG 15 1_555 hydrog WATSON-CRICK B DT 9 A N3 DT 9 1_555 D DA 114 C N1 DA 14 1_555 hydrog WATSON-CRICK B DT 9 A O4 DT 9 1_555 D DA 114 C N6 DA 14 1_555 hydrog WATSON-CRICK B DT 10 A N3 DT 10 1_555 D DA 113 C N1 DA 13 1_555 hydrog WATSON-CRICK B DT 10 A O4 DT 10 1_555 D DA 113 C N6 DA 13 1_555 hydrog WATSON-CRICK C TGP 11 B N1 TGP 1 1_555 D DC 112 C N3 DC 12 1_555 hydrog WATSON-CRICK C TGP 11 B N2 TGP 1 1_555 D DC 112 C O2 DC 12 1_555 hydrog WATSON-CRICK C TGP 11 B O6 TGP 1 1_555 D DC 112 C N4 DC 12 1_555 hydrog WATSON-CRICK C DG 12 B N1 DG 2 1_555 D DC 111 C N3 DC 11 1_555 hydrog WATSON-CRICK C DG 12 B N2 DG 2 1_555 D DC 111 C O2 DC 11 1_555 hydrog WATSON-CRICK C DG 12 B O6 DG 2 1_555 D DC 111 C N4 DC 11 1_555 hydrog WATSON-CRICK C DA 13 B N1 DA 3 1_555 D DT 110 C N3 DT 10 1_555 hydrog WATSON-CRICK C DA 13 B N6 DA 3 1_555 D DT 110 C O4 DT 10 1_555 hydrog WATSON-CRICK C DA 14 B N1 DA 4 1_555 D DT 109 C N3 DT 9 1_555 hydrog WATSON-CRICK C DA 14 B N6 DA 4 1_555 D DT 109 C O4 DT 9 1_555 hydrog WATSON-CRICK C DA 15 B N1 DA 5 1_555 D DT 108 C N3 DT 8 1_555 hydrog WATSON-CRICK C DA 15 B N6 DA 5 1_555 D DT 108 C O4 DT 8 1_555 hydrog WATSON-CRICK C DA 16 B N1 DA 6 1_555 D DT 107 C N3 DT 7 1_555 hydrog WATSON-CRICK C DA 16 B N6 DA 6 1_555 D DT 107 C O4 DT 7 1_555 hydrog WATSON-CRICK C DA 17 B N1 DA 7 1_555 D DT 106 C N3 DT 6 1_555 hydrog WATSON-CRICK C DA 17 B N6 DA 7 1_555 D DT 106 C O4 DT 6 1_555 hydrog WATSON-CRICK C DT 18 B N3 DT 8 1_555 D DA 105 C N1 DA 5 1_555 hydrog WATSON-CRICK C DT 18 B O4 DT 8 1_555 D DA 105 C N6 DA 5 1_555 hydrog WATSON-CRICK C DT 19 B N3 DT 9 1_555 D DA 104 C N1 DA 4 1_555 hydrog WATSON-CRICK C DT 19 B O4 DT 9 1_555 D DA 104 C N6 DA 4 1_555 hydrog WATSON-CRICK C DT 20 B N3 DT 10 1_555 D DA 103 C N1 DA 3 1_555 hydrog WATSON-CRICK C DT 20 B O4 DT 10 1_555 D DA 103 C N6 DA 3 1_555 hydrog WATSON-CRICK C DT 21 B N3 DT 11 1_555 D DA 102 C N1 DA 2 1_555 hydrog WATSON-CRICK C DT 21 B O4 DT 11 1_555 D DA 102 C N6 DA 2 1_555 hydrog WATSON-CRICK C DT 22 B N3 DT 12 1_555 D DA 101 C N1 DA 1 1_555 hydrog WATSON-CRICK C DT 22 B O4 DT 12 1_555 D DA 101 C N6 DA 1 1_555 ISOMERASE/DNA COMPLEX (ISOMERASE-DNA), DNA, TOPOISOMERASE I, DRUG, POISON, IDENOISOQUINOLINE, ISOMERASE-DNA complex TOP1_HUMAN UNP 4 174 P11387 KKPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA EEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEK LLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWL VSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEK EEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDA KKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWC KKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 1SC7 PDB 1 1SC7 1SC7 PDB 2 1SC7 1SC7 PDB 3 1SC7 174 765 1SC7 174 765 P11387 A 1 1 592 1 10 1SC7 1 10 1SC7 B 2 1 10 11 22 1SC7 11 22 1SC7 C 3 1 12 101 122 1SC7 101 122 1SC7 D 4 1 22 1 TYR MODIFIED RESIDUE PTR 723 1SC7 A P11387 UNP 723 550 3 3 4 3 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 220 D LEU 47 A GLU 221 D GLU 48 A PHE 340 D PHE 167 A MET 343 D MET 170 A HIS 346 D HIS 173 A ARG 349 D ARG 176 A LYS 245 D LYS 72 A MET 247 D MET 74 A PHE 240 D PHE 67 A TYR 242 D TYR 69 A CYS 300 D CYS 127 A ASP 301 D ASP 128 A GLU 403 D GLU 230 A ARG 405 D ARG 232 A ILE 383 D ILE 210 A ASN 385 D ASN 212 A VAL 414 D VAL 241 A THR 417 D THR 244 A ILE 424 D ILE 251 A ILE 427 D ILE 254 A ILE 512 D ILE 339 A HIS 515 D HIS 342 A VAL 524 D VAL 351 A LEU 530 D LEU 357 A ARG 536 D ARG 363 A PRO 542 D PRO 369 BINDING SITE FOR RESIDUE M38 C 990 Software 7 BINDING SITE FOR RESIDUE PG4 A 911 Software 5 A ALA 351 D ALA 178 7 1_555 A ASN 352 D ASN 179 7 1_555 A ARG 364 D ARG 191 7 1_555 B DT 10 A DT 10 7 1_555 C TGP 11 B TGP 1 7 1_555 D DC 112 C DC 12 7 1_555 D DA 113 C DA 13 7 1_555 A ASP 500 D ASP 327 5 1_555 A GLU 510 D GLU 337 5 1_555 A HIS 511 D HIS 338 5 1_555 A ASP 528 D ASP 355 5 1_555 A LEU 530 D LEU 357 5 1_555 5 C 1 2 1