0.012658 0.000000 0.000000 0.000000 0.012658 0.000000 0.000000 0.000000 0.026221 0.00000 0.00000 0.00000 Von Dreele, R.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 79.000 79.000 38.137 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 61 22 32 10.1107/S0907444904025715 15608372 Binding of N-acetylglucosamine oligosaccharides to hen egg-white lysozyme: a powder diffraction study. 2005 DK J.Appl.Crystallogr. JACGAR 0228 0021-8898 32 1084 1089 Combined Rietveld and Stereochemical Restraint Refinement of a Protein Crystal Structure 1999 DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 56 1549 1553 The First Protein Crystal Structure Determined from High Resolution X-Ray Powder Diffraction Data: A Variant of the T3R3 Human Insulin Zinc Complex Produced by Grinding 2000 DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 57 1836 1842 Binding of N-Acetylglucoasmine to Chicken Egg Lysozyme: A Powder Diffraction Study 2001 296 1 Ge(111) analyser DIFFRACTOMETER 2001-07-21 CUSTOM-MADE double Si(111) SINGLE WAVELENGTH M x-ray 1 0.700388 1.0 X3B1 NSLS 0.700388 SYNCHROTRON NSLS BEAMLINE X3B1 14331.160 LYSOZYME 3.2.1.17 1 man polymer 1033.979 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 1,4-BETA-N-ACETYLMURAMIDASE C; ALLERGEN GAL D 4; GAL D IV E.C.3.2.1.17 no no KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n chicken Gallus Escherichia sample CYTOPLASM 9031 Gallus gallus 562 Escherichia coli 2.080 40.40 rapid precipitation 6.0 NaCl, Na2HPO4, KH2PO4, penta-N-acetylchitopentaose, pH 6.0, rapid precipitation, temperature 298K 298 atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Atomic model Data collection Derived calculations Structure summary 1 0 2004-03-02 1 1 2008-04-29 1 2 2011-07-13 2 0 2020-07-29 _atom_site.auth_asym_id _atom_site.auth_seq_id _atom_site.label_asym_id _chem_comp.name _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id B NAG 201 n B NAG 1 B NAG 202 n B NAG 2 B NAG 203 n B NAG 3 B NAG 204 n B NAG 4 B NAG 205 n B NAG 5 DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc The same protein complexed with N-acetylglucosamine RCSB Y RCSB 2004-02-19 REL REL oligosaccharide DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,5,4/[a2122h-1b_1-5_2*NCC/3=O]/1-1-1-1-1/a4-b1_b4-c1_c4-d1_d4-e1 2 PDB2Glycan 1.1.0 WURCS [][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}}} 2 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing C1 O4 NAG NAG 3 2 2 O1 HO4 sing C1 O4 NAG NAG 4 3 2 O1 HO4 sing C1 O4 NAG NAG 5 4 2 O1 HO4 sing n n n n n LYS 1 n 1 LYS 1 A VAL 2 n 2 VAL 2 A PHE 3 n 3 PHE 3 A GLY 4 n 4 GLY 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A GLU 7 n 7 GLU 7 A LEU 8 n 8 LEU 8 A ALA 9 n 9 ALA 9 A ALA 10 n 10 ALA 10 A ALA 11 n 11 ALA 11 A MET 12 n 12 MET 12 A LYS 13 n 13 LYS 13 A ARG 14 n 14 ARG 14 A HIS 15 n 15 HIS 15 A GLY 16 n 16 GLY 16 A LEU 17 n 17 LEU 17 A ASP 18 n 18 ASP 18 A ASN 19 n 19 ASN 19 A TYR 20 n 20 TYR 20 A ARG 21 n 21 ARG 21 A GLY 22 n 22 GLY 22 A TYR 23 n 23 TYR 23 A SER 24 n 24 SER 24 A LEU 25 n 25 LEU 25 A GLY 26 n 26 GLY 26 A ASN 27 n 27 ASN 27 A TRP 28 n 28 TRP 28 A VAL 29 n 29 VAL 29 A CYS 30 n 30 CYS 30 A ALA 31 n 31 ALA 31 A ALA 32 n 32 ALA 32 A LYS 33 n 33 LYS 33 A PHE 34 n 34 PHE 34 A GLU 35 n 35 GLU 35 A SER 36 n 36 SER 36 A ASN 37 n 37 ASN 37 A PHE 38 n 38 PHE 38 A ASN 39 n 39 ASN 39 A THR 40 n 40 THR 40 A GLN 41 n 41 GLN 41 A ALA 42 n 42 ALA 42 A THR 43 n 43 THR 43 A ASN 44 n 44 ASN 44 A ARG 45 n 45 ARG 45 A ASN 46 n 46 ASN 46 A THR 47 n 47 THR 47 A ASP 48 n 48 ASP 48 A GLY 49 n 49 GLY 49 A SER 50 n 50 SER 50 A THR 51 n 51 THR 51 A ASP 52 n 52 ASP 52 A TYR 53 n 53 TYR 53 A GLY 54 n 54 GLY 54 A ILE 55 n 55 ILE 55 A LEU 56 n 56 LEU 56 A GLN 57 n 57 GLN 57 A ILE 58 n 58 ILE 58 A ASN 59 n 59 ASN 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A TRP 62 n 62 TRP 62 A TRP 63 n 63 TRP 63 A CYS 64 n 64 CYS 64 A ASN 65 n 65 ASN 65 A ASP 66 n 66 ASP 66 A GLY 67 n 67 GLY 67 A ARG 68 n 68 ARG 68 A THR 69 n 69 THR 69 A PRO 70 n 70 PRO 70 A GLY 71 n 71 GLY 71 A SER 72 n 72 SER 72 A ARG 73 n 73 ARG 73 A ASN 74 n 74 ASN 74 A LEU 75 n 75 LEU 75 A CYS 76 n 76 CYS 76 A ASN 77 n 77 ASN 77 A ILE 78 n 78 ILE 78 A PRO 79 n 79 PRO 79 A CYS 80 n 80 CYS 80 A SER 81 n 81 SER 81 A ALA 82 n 82 ALA 82 A LEU 83 n 83 LEU 83 A LEU 84 n 84 LEU 84 A SER 85 n 85 SER 85 A SER 86 n 86 SER 86 A ASP 87 n 87 ASP 87 A ILE 88 n 88 ILE 88 A THR 89 n 89 THR 89 A ALA 90 n 90 ALA 90 A SER 91 n 91 SER 91 A VAL 92 n 92 VAL 92 A ASN 93 n 93 ASN 93 A CYS 94 n 94 CYS 94 A ALA 95 n 95 ALA 95 A LYS 96 n 96 LYS 96 A LYS 97 n 97 LYS 97 A ILE 98 n 98 ILE 98 A VAL 99 n 99 VAL 99 A SER 100 n 100 SER 100 A ASP 101 n 101 ASP 101 A GLY 102 n 102 GLY 102 A ASN 103 n 103 ASN 103 A GLY 104 n 104 GLY 104 A MET 105 n 105 MET 105 A ASN 106 n 106 ASN 106 A ALA 107 n 107 ALA 107 A TRP 108 n 108 TRP 108 A VAL 109 n 109 VAL 109 A ALA 110 n 110 ALA 110 A TRP 111 n 111 TRP 111 A ARG 112 n 112 ARG 112 A ASN 113 n 113 ASN 113 A ARG 114 n 114 ARG 114 A CYS 115 n 115 CYS 115 A LYS 116 n 116 LYS 116 A GLY 117 n 117 GLY 117 A THR 118 n 118 THR 118 A ASP 119 n 119 ASP 119 A VAL 120 n 120 VAL 120 A GLN 121 n 121 GLN 121 A ALA 122 n 122 ALA 122 A TRP 123 n 123 TRP 123 A ILE 124 n 124 ILE 124 A ARG 125 n 125 ARG 125 A GLY 126 n 126 GLY 126 A CYS 127 n 127 CYS 127 A ARG 128 n 128 ARG 128 A LEU 129 n 129 LEU 129 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 53 A N TYR 53 A O ILE 58 A O ILE 58 1 A ARG 5 0.154 SIDE CHAIN 1 A ARG 14 0.134 SIDE CHAIN 1 A ARG 21 0.135 SIDE CHAIN 1 A ARG 45 0.252 SIDE CHAIN 1 A ARG 61 0.201 SIDE CHAIN 1 A ARG 68 0.084 SIDE CHAIN 1 A ARG 112 0.083 SIDE CHAIN 1 A ARG 125 0.220 SIDE CHAIN 1 A ARG 128 0.252 SIDE CHAIN 1 11.85 1.10 114.20 126.05 A A A CA CB SG CYS CYS CYS 64 64 64 N 1 -22.91 2.10 128.40 105.49 A A A C N CD THR PRO PRO 69 70 70 Y 1 -7.52 0.90 118.30 110.78 A A A CB CG OD1 ASP ASP ASP 119 119 119 N 1 14.41 0.90 118.30 132.71 A A A CB CG OD2 ASP ASP ASP 119 119 119 N 1 A A CB CG ASP ASP 119 119 0.161 0.021 1.513 1.674 N 1 A A CG OD2 ASP ASP 119 119 0.216 0.023 1.249 1.465 N 3.22 40.13 1SFB 2254 2254 0 0 1 100 data collection pov data reduction PROCESS model building GSAS refinement GSAS data reduction POV data scaling PROCESS phasing GSAS LYSOZYME (E.C.3.2.1.17) BINDING OF PENTA-N-ACETYLCHITOPENTAOSE TO HEW LYSOZYME: A POWDER DIFFRACTION STUDY 1 N N 2 N N A ARG 5 A ARG 5 HELX_P A ARG 14 A ARG 14 5 1 10 A SER 24 A SER 24 HELX_P A SER 36 A SER 36 1 2 13 A CYS 80 A CYS 80 HELX_P A SER 85 A SER 85 1 3 6 A SER 91 A SER 91 HELX_P A ILE 98 A ILE 98 1 4 8 A ASN 103 A ASN 103 HELX_P A TRP 108 A TRP 108 5 5 6 A VAL 109 A VAL 109 HELX_P A ARG 114 A ARG 114 1 6 6 A ASP 119 A ASP 119 HELX_P A TRP 123 A TRP 123 5 7 5 disulf 2.037 A CYS 6 A SG CYS 6 1_555 A CYS 127 A SG CYS 127 1_555 disulf 2.046 A CYS 30 A SG CYS 30 1_555 A CYS 115 A SG CYS 115 1_555 disulf 2.049 A CYS 64 A SG CYS 64 1_555 A CYS 80 A SG CYS 80 1_555 disulf 2.027 A CYS 76 A SG CYS 76 1_555 A CYS 94 A SG CYS 94 1_555 covale 1.481 both B NAG 1 B O4 NAG 1_555 B NAG 2 B C1 NAG 1_555 covale 1.476 both B NAG 2 B O4 NAG 1_555 B NAG 3 B C1 NAG 1_555 covale 1.479 both B NAG 3 B O4 NAG 1_555 B NAG 4 B C1 NAG 1_555 covale 1.490 both B NAG 4 B O4 NAG 1_555 B NAG 5 B C1 NAG 1_555 HYDROLASE POWDER DIFFRACTION; RIETVELD REFINEMENT; LYSOZYME, HYDROLASE LYC_CHICK UNP 1 19 P00698 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL 19 147 1SFB 1 129 P00698 A 1 1 129 2 anti-parallel A ASP 52 A ASP 52 A TYR 53 A TYR 53 A ILE 58 A ILE 58 A ASN 59 A ASN 59 96 P 43 21 2