0.019530
0.000000
0.000000
0.000000
0.010816
0.000000
0.000000
0.000000
0.020828
0.00000
0.00000
0.00000
Ha, S.C.
Van Quyen, D.
Wu, C.A.
Lowenhaupt, K.
Rich, A.
Kim, Y.G.
Kim, K.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
51.203
92.452
48.012
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
N
100
N
N
N
101
N
C
N
102
N
O
N
103
N
N
N
104
N
C
N
105
N
N
N
106
N
C
N
107
N
C
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
O
N
123
N
P
N
124
N
O
N
125
N
O
N
126
N
O
N
127
N
C
N
128
R
C
N
129
N
O
N
130
S
C
N
131
N
O
N
132
N
C
N
133
R
C
Y
134
N
N
Y
135
N
C
Y
136
N
N
Y
137
N
C
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
C
N
142
N
N
N
143
N
N
Y
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
P
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
O
N
167
S
C
N
168
N
O
N
169
N
C
N
170
R
C
N
171
N
N
N
172
N
C
N
173
N
O
N
174
N
N
N
175
N
C
N
176
N
O
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
N
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
O
N
223
N
O
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
S
C
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
C
N
312
N
S
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
N
371
N
O
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
R
C
N
385
N
O
N
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
N
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
N
C
N
453
N
C
N
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
Y
141
N
sing
Y
142
N
sing
Y
143
N
doub
N
144
N
sing
Y
145
N
sing
N
146
N
sing
Y
147
N
doub
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
Y
329
N
doub
Y
330
N
sing
Y
331
N
sing
N
332
N
sing
Y
333
N
doub
N
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
Y
398
N
doub
Y
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
doub
Y
403
N
sing
Y
404
N
sing
N
405
N
sing
Y
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
101
14367
14372
10.1073/pnas.0405586101
15448208
A poxvirus protein forms a complex with left-handed Z-DNA: crystal structure of a Yatapoxvirus Zalpha bound to DNA.
2004
10.2210/pdb1sfu/pdb
pdb_00001sfu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-11-26
MARRESEARCH
MAD
M
x-ray
1
0.9201
1.0
0.9203
1.0
0.9159
1.0
BL41XU
SPring-8
0.9201
0.9203, 0.9159
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
2114.398
5'-D(*T*CP*GP*CP*GP*CP*G)-3'
2
syn
polymer
8722.137
34L protein
N-terminal Zalpha domain
2
man
polymer
18.015
water
170
nat
water
no
no
(DT)(DC)(DG)(DC)(DG)(DC)(DG)
TCGCGCG
C,D
polydeoxyribonucleotide
no
no
MDLLSCTVNDAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWFKNYNC
MDLLSCTVNDAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWFKNYNC
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Yatapoxvirus
Escherichia
Escherichia coli
sample
132475
Yaba-like disease virus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
Plasmid
pET28a
1
2.95
58.03
VAPOR DIFFUSION, HANGING DROP
6.0
1-1.1 M lithium sulfate, 2-4 mM magnesium chloride, 25 mM cacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
lithium sulfate
1
magnesium chloride
1
cacodylate
1
H2O
1
lithium sulfate
2
magnesium chloride
2
H2O
2
3.886
1
19
C
1
D
6
1.788
C_DC1:DG6_D
1
0.008
-0.189
0.085
-0.157
-2.597
1
19
C
2
D
5
3.334
C_DG2:DC5_D
2
-3.648
0.361
0.056
-0.160
2.975
1
19
C
3
D
4
1.761
C_DC3:DG4_D
3
0.926
-0.278
0.263
-0.121
-0.492
1
19
C
4
D
3
1.909
C_DG4:DC3_D
4
5.051
0.402
0.092
-0.114
-2.166
1
19
C
5
D
2
1.760
C_DC5:DG2_D
5
1.063
-0.232
0.241
-0.056
3.287
1
19
C
6
D
1
4.999
C_DG6:DC1_D
6
9.146
0.194
0.071
-0.149
3.274
-5.695
C
C
1
2
-2.294
D
D
6
5
3.778
0.222
0.027
5.402
CC_DC1DG2:DC5DG6_DD
1
2.151
22.204
-5.268
-55.808
14.187
3.315
-49.376
C
C
2
3
4.953
D
D
5
4
3.421
-4.131
0.238
-1.320
CC_DG2DC3:DG4DC5_DD
2
-3.274
-3.926
-49.111
1.898
0.033
3.599
-9.674
C
C
3
4
4.355
D
D
4
3
3.586
-0.711
0.076
5.283
CC_DC3DG4:DC3DG4_DD
3
4.069
24.927
-8.749
-29.687
9.842
3.227
-51.960
C
C
4
5
8.906
D
D
3
2
3.431
-7.775
-0.146
-1.162
CC_DG4DC5:DG2DC3_DD
4
-2.143
-2.455
-51.373
1.859
-0.313
2.223
-10.351
C
C
5
6
-10.306
D
D
2
1
3.365
1.833
0.265
5.316
CC_DC5DG6:DC1DG2_DD
5
2.366
13.305
-9.910
-32.260
5.080
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2004-08-17
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2004-02-20
REL
REL
HOH
water
HOH
10
3
HOH
HOH
10
C
HOH
11
3
HOH
HOH
11
C
HOH
20
3
HOH
HOH
20
C
HOH
35
3
HOH
HOH
35
C
HOH
46
3
HOH
HOH
46
C
HOH
54
3
HOH
HOH
54
C
HOH
58
3
HOH
HOH
58
C
HOH
61
3
HOH
HOH
61
C
HOH
69
3
HOH
HOH
69
C
HOH
80
3
HOH
HOH
80
C
HOH
90
3
HOH
HOH
90
C
HOH
96
3
HOH
HOH
96
C
HOH
99
3
HOH
HOH
99
C
HOH
101
3
HOH
HOH
101
C
HOH
102
3
HOH
HOH
102
C
HOH
103
3
HOH
HOH
103
C
HOH
108
3
HOH
HOH
108
C
HOH
126
3
HOH
HOH
126
C
HOH
141
3
HOH
HOH
141
C
HOH
149
3
HOH
HOH
149
C
HOH
164
3
HOH
HOH
164
C
HOH
167
3
HOH
HOH
167
C
HOH
7
3
HOH
HOH
7
D
HOH
9
3
HOH
HOH
9
D
HOH
13
3
HOH
HOH
13
D
HOH
15
3
HOH
HOH
15
D
HOH
16
3
HOH
HOH
16
D
HOH
19
3
HOH
HOH
19
D
HOH
21
3
HOH
HOH
21
D
HOH
22
3
HOH
HOH
22
D
HOH
31
3
HOH
HOH
31
D
HOH
41
3
HOH
HOH
41
D
HOH
42
3
HOH
HOH
42
D
HOH
43
3
HOH
HOH
43
D
HOH
47
3
HOH
HOH
47
D
HOH
49
3
HOH
HOH
49
D
HOH
51
3
HOH
HOH
51
D
HOH
53
3
HOH
HOH
53
D
HOH
55
3
HOH
HOH
55
D
HOH
74
3
HOH
HOH
74
D
HOH
75
3
HOH
HOH
75
D
HOH
79
3
HOH
HOH
79
D
HOH
82
3
HOH
HOH
82
D
HOH
86
3
HOH
HOH
86
D
HOH
104
3
HOH
HOH
104
D
HOH
109
3
HOH
HOH
109
D
HOH
113
3
HOH
HOH
113
D
HOH
116
3
HOH
HOH
116
D
HOH
119
3
HOH
HOH
119
D
HOH
124
3
HOH
HOH
124
D
HOH
127
3
HOH
HOH
127
D
HOH
130
3
HOH
HOH
130
D
HOH
135
3
HOH
HOH
135
D
HOH
136
3
HOH
HOH
136
D
HOH
158
3
HOH
HOH
158
D
HOH
163
3
HOH
HOH
163
D
HOH
1
3
HOH
HOH
76
A
HOH
5
3
HOH
HOH
77
A
HOH
8
3
HOH
HOH
78
A
HOH
12
3
HOH
HOH
79
A
HOH
14
3
HOH
HOH
80
A
HOH
17
3
HOH
HOH
81
A
HOH
18
3
HOH
HOH
82
A
HOH
28
3
HOH
HOH
83
A
HOH
38
3
HOH
HOH
84
A
HOH
48
3
HOH
HOH
85
A
HOH
56
3
HOH
HOH
86
A
HOH
60
3
HOH
HOH
87
A
HOH
62
3
HOH
HOH
88
A
HOH
65
3
HOH
HOH
89
A
HOH
67
3
HOH
HOH
90
A
HOH
68
3
HOH
HOH
91
A
HOH
73
3
HOH
HOH
92
A
HOH
76
3
HOH
HOH
93
A
HOH
84
3
HOH
HOH
94
A
HOH
93
3
HOH
HOH
95
A
HOH
94
3
HOH
HOH
96
A
HOH
95
3
HOH
HOH
97
A
HOH
98
3
HOH
HOH
98
A
HOH
105
3
HOH
HOH
99
A
HOH
107
3
HOH
HOH
100
A
HOH
110
3
HOH
HOH
101
A
HOH
111
3
HOH
HOH
102
A
HOH
115
3
HOH
HOH
103
A
HOH
121
3
HOH
HOH
104
A
HOH
123
3
HOH
HOH
105
A
HOH
138
3
HOH
HOH
106
A
HOH
139
3
HOH
HOH
107
A
HOH
143
3
HOH
HOH
108
A
HOH
144
3
HOH
HOH
109
A
HOH
148
3
HOH
HOH
110
A
HOH
153
3
HOH
HOH
111
A
HOH
154
3
HOH
HOH
112
A
HOH
157
3
HOH
HOH
113
A
HOH
161
3
HOH
HOH
114
A
HOH
162
3
HOH
HOH
115
A
HOH
169
3
HOH
HOH
116
A
HOH
170
3
HOH
HOH
117
A
HOH
171
3
HOH
HOH
118
A
HOH
2
3
HOH
HOH
76
B
HOH
3
3
HOH
HOH
77
B
HOH
4
3
HOH
HOH
78
B
HOH
6
3
HOH
HOH
79
B
HOH
23
3
HOH
HOH
80
B
HOH
24
3
HOH
HOH
81
B
HOH
25
3
HOH
HOH
82
B
HOH
26
3
HOH
HOH
83
B
HOH
27
3
HOH
HOH
84
B
HOH
29
3
HOH
HOH
85
B
HOH
30
3
HOH
HOH
86
B
HOH
32
3
HOH
HOH
87
B
HOH
33
3
HOH
HOH
88
B
HOH
34
3
HOH
HOH
89
B
HOH
36
3
HOH
HOH
90
B
HOH
37
3
HOH
HOH
91
B
HOH
39
3
HOH
HOH
92
B
HOH
40
3
HOH
HOH
93
B
HOH
44
3
HOH
HOH
94
B
HOH
45
3
HOH
HOH
95
B
HOH
50
3
HOH
HOH
96
B
HOH
52
3
HOH
HOH
97
B
HOH
57
3
HOH
HOH
98
B
HOH
59
3
HOH
HOH
99
B
HOH
63
3
HOH
HOH
100
B
HOH
64
3
HOH
HOH
101
B
HOH
66
3
HOH
HOH
102
B
HOH
70
3
HOH
HOH
103
B
HOH
71
3
HOH
HOH
104
B
HOH
72
3
HOH
HOH
105
B
HOH
77
3
HOH
HOH
106
B
HOH
78
3
HOH
HOH
107
B
HOH
81
3
HOH
HOH
108
B
HOH
83
3
HOH
HOH
109
B
HOH
85
3
HOH
HOH
110
B
HOH
87
3
HOH
HOH
111
B
HOH
88
3
HOH
HOH
112
B
HOH
89
3
HOH
HOH
113
B
HOH
91
3
HOH
HOH
114
B
HOH
92
3
HOH
HOH
115
B
HOH
97
3
HOH
HOH
116
B
HOH
100
3
HOH
HOH
117
B
HOH
106
3
HOH
HOH
118
B
HOH
112
3
HOH
HOH
119
B
HOH
114
3
HOH
HOH
120
B
HOH
117
3
HOH
HOH
121
B
HOH
118
3
HOH
HOH
122
B
HOH
120
3
HOH
HOH
123
B
HOH
122
3
HOH
HOH
124
B
HOH
125
3
HOH
HOH
125
B
HOH
128
3
HOH
HOH
126
B
HOH
129
3
HOH
HOH
127
B
HOH
131
3
HOH
HOH
128
B
HOH
132
3
HOH
HOH
129
B
HOH
133
3
HOH
HOH
130
B
HOH
134
3
HOH
HOH
131
B
HOH
137
3
HOH
HOH
132
B
HOH
140
3
HOH
HOH
133
B
HOH
142
3
HOH
HOH
134
B
HOH
145
3
HOH
HOH
135
B
HOH
146
3
HOH
HOH
136
B
HOH
147
3
HOH
HOH
137
B
HOH
150
3
HOH
HOH
138
B
HOH
151
3
HOH
HOH
139
B
HOH
152
3
HOH
HOH
140
B
HOH
155
3
HOH
HOH
141
B
HOH
156
3
HOH
HOH
142
B
HOH
159
3
HOH
HOH
143
B
HOH
160
3
HOH
HOH
144
B
HOH
165
3
HOH
HOH
145
B
HOH
166
3
HOH
HOH
146
B
n
1
0
C
C
1
n
2
DC
1
C
G
2
n
3
DG
2
C
C
3
n
4
DC
3
C
G
4
n
5
DG
4
C
C
5
n
6
DC
5
C
G
6
n
7
DG
6
C
n
1
0
D
C
1
n
2
DC
1
D
G
2
n
3
DG
2
D
C
3
n
4
DC
3
D
G
4
n
5
DG
4
D
C
5
n
6
DC
5
D
G
6
n
7
DG
6
D
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
CYS
6
n
6
CYS
6
A
THR
7
n
7
THR
7
A
VAL
8
n
8
VAL
8
A
ASN
9
n
9
ASN
9
A
ASP
10
n
10
ASP
10
A
ALA
11
n
11
ALA
11
A
GLU
12
n
12
GLU
12
A
ILE
13
n
13
ILE
13
A
PHE
14
n
14
PHE
14
A
SER
15
n
15
SER
15
A
LEU
16
n
16
LEU
16
A
VAL
17
n
17
VAL
17
A
LYS
18
n
18
LYS
18
A
LYS
19
n
19
LYS
19
A
GLU
20
n
20
GLU
20
A
VAL
21
n
21
VAL
21
A
LEU
22
n
22
LEU
22
A
SER
23
n
23
SER
23
A
LEU
24
n
24
LEU
24
A
ASN
25
n
25
ASN
25
A
THR
26
n
26
THR
26
A
ASN
27
n
27
ASN
27
A
ASP
28
n
28
ASP
28
A
TYR
29
n
29
TYR
29
A
THR
30
n
30
THR
30
A
THR
31
n
31
THR
31
A
ALA
32
n
32
ALA
32
A
ILE
33
n
33
ILE
33
A
SER
34
n
34
SER
34
A
LEU
35
n
35
LEU
35
A
SER
36
n
36
SER
36
A
ASN
37
n
37
ASN
37
A
ARG
38
n
38
ARG
38
A
LEU
39
n
39
LEU
39
A
LYS
40
n
40
LYS
40
A
ILE
41
n
41
ILE
41
A
ASN
42
n
42
ASN
42
A
LYS
43
n
43
LYS
43
A
LYS
44
n
44
LYS
44
A
LYS
45
n
45
LYS
45
A
ILE
46
n
46
ILE
46
A
ASN
47
n
47
ASN
47
A
GLN
48
n
48
GLN
48
A
GLN
49
n
49
GLN
49
A
LEU
50
n
50
LEU
50
A
TYR
51
n
51
TYR
51
A
LYS
52
n
52
LYS
52
A
LEU
53
n
53
LEU
53
A
GLN
54
n
54
GLN
54
A
LYS
55
n
55
LYS
55
A
GLU
56
n
56
GLU
56
A
ASP
57
n
57
ASP
57
A
THR
58
n
58
THR
58
A
VAL
59
n
59
VAL
59
A
LYS
60
n
60
LYS
60
A
MET
61
n
61
MET
61
A
VAL
62
n
62
VAL
62
A
PRO
63
n
63
PRO
63
A
SER
64
n
64
SER
64
A
ASN
65
n
65
ASN
65
A
PRO
66
n
66
PRO
66
A
PRO
67
n
67
PRO
67
A
LYS
68
n
68
LYS
68
A
TRP
69
n
69
TRP
69
A
PHE
70
n
70
PHE
70
A
LYS
71
n
71
LYS
71
A
ASN
72
n
72
ASN
72
A
TYR
73
n
73
TYR
73
A
ASN
74
n
74
ASN
74
A
CYS
75
n
75
CYS
75
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
CYS
6
n
6
CYS
6
B
THR
7
n
7
THR
7
B
VAL
8
n
8
VAL
8
B
ASN
9
n
9
ASN
9
B
ASP
10
n
10
ASP
10
B
ALA
11
n
11
ALA
11
B
GLU
12
n
12
GLU
12
B
ILE
13
n
13
ILE
13
B
PHE
14
n
14
PHE
14
B
SER
15
n
15
SER
15
B
LEU
16
n
16
LEU
16
B
VAL
17
n
17
VAL
17
B
LYS
18
n
18
LYS
18
B
LYS
19
n
19
LYS
19
B
GLU
20
n
20
GLU
20
B
VAL
21
n
21
VAL
21
B
LEU
22
n
22
LEU
22
B
SER
23
n
23
SER
23
B
LEU
24
n
24
LEU
24
B
ASN
25
n
25
ASN
25
B
THR
26
n
26
THR
26
B
ASN
27
n
27
ASN
27
B
ASP
28
n
28
ASP
28
B
TYR
29
n
29
TYR
29
B
THR
30
n
30
THR
30
B
THR
31
n
31
THR
31
B
ALA
32
n
32
ALA
32
B
ILE
33
n
33
ILE
33
B
SER
34
n
34
SER
34
B
LEU
35
n
35
LEU
35
B
SER
36
n
36
SER
36
B
ASN
37
n
37
ASN
37
B
ARG
38
n
38
ARG
38
B
LEU
39
n
39
LEU
39
B
GLY
40
n
40
LYS
40
B
ILE
41
n
41
ILE
41
B
ASN
42
n
42
ASN
42
B
LYS
43
n
43
LYS
43
B
LYS
44
n
44
LYS
44
B
LYS
45
n
45
LYS
45
B
ILE
46
n
46
ILE
46
B
ASN
47
n
47
ASN
47
B
GLN
48
n
48
GLN
48
B
GLN
49
n
49
GLN
49
B
LEU
50
n
50
LEU
50
B
TYR
51
n
51
TYR
51
B
LYS
52
n
52
LYS
52
B
LEU
53
n
53
LEU
53
B
GLN
54
n
54
GLN
54
B
LYS
55
n
55
LYS
55
B
GLU
56
n
56
GLU
56
B
ASP
57
n
57
ASP
57
B
THR
58
n
58
THR
58
B
VAL
59
n
59
VAL
59
B
LYS
60
n
60
LYS
60
B
MET
61
n
61
MET
61
B
VAL
62
n
62
VAL
62
B
PRO
63
n
63
PRO
63
B
SER
64
n
64
SER
64
B
ASN
65
n
65
ASN
65
B
PRO
66
n
66
PRO
66
B
PRO
67
n
67
PRO
67
B
LYS
68
n
68
LYS
68
B
TRP
69
n
69
TRP
69
B
PHE
70
n
70
PHE
70
B
LYS
71
n
71
LYS
71
B
ASN
72
n
72
ASN
72
B
TYR
73
n
73
TYR
73
B
ASN
74
n
74
ASN
74
B
CYS
75
n
75
CYS
75
B
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
60
C
N
LYS
60
A
O
PHE
70
C
O
PHE
70
B
N
THR
30
D
N
THR
30
B
O
TRP
69
D
O
TRP
69
B
O
PHE
70
D
O
PHE
70
B
N
LYS
60
D
N
LYS
60
1
C
P
DC
1
A
P
DC
2
1
Y
1
C
OP1
DC
1
A
OP1
DC
2
1
Y
1
C
OP2
DC
1
A
OP2
DC
2
1
Y
1
D
P
DC
1
B
P
DC
2
1
Y
1
D
OP1
DC
1
B
OP1
DC
2
1
Y
1
D
OP2
DC
1
B
OP2
DC
2
1
Y
1
A
OG1
THR
7
C
OG1
THR
7
1
Y
1
A
CG2
THR
7
C
CG2
THR
7
1
Y
1
A
CG1
VAL
8
C
CG1
VAL
8
1
Y
1
A
CG2
VAL
8
C
CG2
VAL
8
1
Y
1
A
CG
ASN
9
C
CG
ASN
9
1
Y
1
A
OD1
ASN
9
C
OD1
ASN
9
1
Y
1
A
ND2
ASN
9
C
ND2
ASN
9
1
Y
1
B
CB
LYS
40
D
CB
LYS
40
1
Y
1
B
CG
LYS
40
D
CG
LYS
40
1
Y
1
B
CD
LYS
40
D
CD
LYS
40
1
Y
1
B
CE
LYS
40
D
CE
LYS
40
1
Y
1
B
NZ
LYS
40
D
NZ
LYS
40
1
Y
1
C
DT
0
A
DT
1
1
Y
1
D
DT
0
B
DT
1
1
Y
1
A
MET
1
C
MET
1
1
Y
1
A
ASP
2
C
ASP
2
1
Y
1
A
LEU
3
C
LEU
3
1
Y
1
A
LEU
4
C
LEU
4
1
Y
1
A
SER
5
C
SER
5
1
Y
1
B
MET
1
D
MET
1
1
Y
1
B
ASP
2
D
ASP
2
1
Y
1
B
LEU
3
D
LEU
3
1
Y
1
B
LEU
4
D
LEU
4
1
Y
1
B
SER
5
D
SER
5
1
Y
1
A
ASN
9
-54.98
-123.61
1
A
PRO
63
-55.60
65.35
1
B
THR
26
-29.56
-67.43
1
B
SER
64
172.44
173.64
-1.017
0.000
0.000
5.277
0.000
-4.259
0.2704
0.2375
2.0
20.0
1539
15970
15266
9.6
95.6
random
1
0
MAD
2.0
20.0
170
1542
0
240
1132
0.0053
1.1844
2.0
50.0
1SFU
15772
1
2.0
2.07
99.8
data collection
HKL-2000
data scaling
SCALEPACK
phasing
SOLVE
refinement
CNS
data reduction
HKL-2000
Crystal structure of the viral Zalpha domain bound to left-handed Z-DNA
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
A
ALA
11
C
ALA
11
HELX_P
A
SER
23
C
SER
23
1
1
13
A
THR
31
C
THR
31
HELX_P
A
LEU
39
C
LEU
39
1
2
9
A
ASN
42
C
ASN
42
HELX_P
A
GLU
56
C
GLU
56
1
3
15
B
ALA
11
D
ALA
11
HELX_P
B
SER
23
D
SER
23
1
4
13
B
THR
31
D
THR
31
HELX_P
B
LEU
39
D
LEU
39
1
5
9
B
ASN
42
D
ASN
42
HELX_P
B
GLU
56
D
GLU
56
1
6
15
hydrog
WATSON-CRICK
C
DC
1
A
N3
DC
2
1_555
D
DG
6
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
1
A
N4
DC
2
1_555
D
DG
6
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
1
A
O2
DC
2
1_555
D
DG
6
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
C
DG
2
A
N1
DG
3
1_555
D
DC
5
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
2
A
N2
DG
3
1_555
D
DC
5
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
2
A
O6
DG
3
1_555
D
DC
5
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
C
DC
3
A
N3
DC
4
1_555
D
DG
4
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
C
DC
3
A
N4
DC
4
1_555
D
DG
4
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
C
DC
3
A
O2
DC
4
1_555
D
DG
4
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
C
DG
4
A
N1
DG
5
1_555
D
DC
3
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
C
DG
4
A
N2
DG
5
1_555
D
DC
3
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
C
DG
4
A
O6
DG
5
1_555
D
DC
3
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
C
DC
5
A
N3
DC
6
1_555
D
DG
2
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
5
A
N4
DC
6
1_555
D
DG
2
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
5
A
O2
DC
6
1_555
D
DG
2
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
C
DG
6
A
N1
DG
7
1_555
D
DC
1
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
6
A
N2
DG
7
1_555
D
DC
1
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
6
A
O6
DG
7
1_555
D
DC
1
B
N4
DC
2
1_555
DNA Binding Protein/DNA
Protein-Z-DNA complex, DNA Binding Protein-DNA COMPLEX
A
ASN
65
C
ASN
65
1
A
PRO
66
C
PRO
66
0.04
B
ASN
65
D
ASN
65
1
B
PRO
66
D
PRO
66
-0.11
Q9DHS8_YLDV
UNP
2
1
Q9DHS8
MDLLSCTVNDAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWFKNYNC
1SFU
PDB
1
1SFU
1
75
1SFU
1
75
Q9DHS8
A
1
1
75
1
75
1SFU
1
75
Q9DHS8
B
1
1
75
0
6
1SFU
0
6
1SFU
C
2
1
7
0
6
1SFU
0
6
1SFU
D
2
1
7
2
3
anti-parallel
anti-parallel
anti-parallel
A
VAL
59
C
VAL
59
A
VAL
62
C
VAL
62
A
LYS
68
C
LYS
68
A
LYS
71
C
LYS
71
B
TYR
29
D
TYR
29
B
THR
30
D
THR
30
B
LYS
68
D
LYS
68
B
LYS
71
D
LYS
71
B
VAL
59
D
VAL
59
B
VAL
62
D
VAL
62
18
P 21 21 2