0.010451 0.006034 -0.000001 0.000000 0.012068 -0.000001 0.000000 0.000000 0.003168 0.00000 0.00000 0.00000 Horton, J.R. Ratner, G. Banavali, N. Huang, N. Marquez, V.E. MacKerell, A.D. Cheng, X. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 95.681 95.681 315.683 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C7 H13 O4 P 192.149 (SOUTH) BICYCLO[3.1.0]HEXANE non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C14 H20 N6 O5 S 384.411 n S-ADENOSYL-L-HOMOCYSTEINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 R P N 281 N O N 282 N O N 283 N O N 284 R C N 285 N C N 286 N C N 287 N C N 288 R C N 289 R C N 290 S C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C Y 310 N C Y 311 N N Y 312 N C Y 313 N C Y 314 N N N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N O N 327 N H N 328 N H N 329 N N N 330 S C N 331 N C N 332 N O N 333 S C N 334 N C N 335 N C N 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C N 356 N C N 357 N C N 358 N C N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N C N 381 N N N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C N 403 N C N 404 N S N 405 N C N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 N C Y 423 N C Y 424 N C Y 425 N C Y 426 N C Y 427 N C Y 428 N C N 429 N O N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N N N 442 S C N 443 N C N 444 N O N 445 N C N 446 N C N 447 N C N 448 N O N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N N N 459 S C N 460 N C N 461 N C N 462 N S N 463 N C N 464 N O N 465 N O N 466 N C N 467 S C N 468 N O N 469 S C N 470 N O N 471 R C N 472 N O N 473 R C Y 474 N N Y 475 N C Y 476 N N Y 477 N C Y 478 N C N 479 N N Y 480 N N Y 481 N C Y 482 N N Y 483 N C N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N N N 505 S C N 506 N C N 507 N O N 508 N C N 509 N O N 510 N O N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N N N 519 S C N 520 N C N 521 N O N 522 R C N 523 N O N 524 N C N 525 N O N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N N N 536 S C N 537 N C N 538 N O N 539 N C Y 540 N C Y 541 N C Y 542 N C Y 543 N N Y 544 N C Y 545 N C Y 546 N C Y 547 N C Y 548 N C N 549 N O N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 558 N H N 559 N H N 560 N H N 561 N H N 562 N N N 563 S C N 564 N C N 565 N O N 566 N C Y 567 N C Y 568 N C Y 569 N C Y 570 N C Y 571 N C Y 572 N C N 573 N O N 574 N O N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 580 N H N 581 N H N 582 N H N 583 N H N 584 N H N 585 N H N 586 N N N 587 S C N 588 N C N 589 N O N 590 N C N 591 N C N 592 N C N 593 N O N 594 N H N 595 N H N 596 N H N 597 N H N 598 N H N 599 N H N 600 N H N 601 N H N 602 N H N 603 N H N 604 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N sing Y 316 N doub Y 317 N doub N 318 N sing Y 319 N sing N 320 N sing Y 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N doub N 419 N sing N 420 N sing N 421 N sing N 422 N sing Y 423 N doub Y 424 N sing Y 425 N sing N 426 N sing Y 427 N doub N 428 N sing Y 429 N doub N 430 N sing Y 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N doub N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N doub N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing Y 485 N sing Y 486 N sing Y 487 N doub N 488 N sing Y 489 N sing Y 490 N sing Y 491 N doub N 492 N sing Y 493 N doub N 494 N sing N 495 N sing Y 496 N sing Y 497 N doub N 498 N sing Y 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N doub N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N doub N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N doub N 536 N sing N 537 N sing N 538 N sing N 539 N sing Y 540 N doub Y 541 N sing Y 542 N sing N 543 N sing Y 544 N doub Y 545 N sing Y 546 N sing N 547 N sing Y 548 N sing Y 549 N doub N 550 N sing Y 551 N doub N 552 N sing Y 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N doub N 564 N sing N 565 N sing N 566 N sing N 567 N sing Y 568 N doub Y 569 N sing Y 570 N sing N 571 N sing Y 572 N doub N 573 N sing Y 574 N doub N 575 N sing Y 576 N sing N 577 N sing N 578 N sing N 579 N sing N 580 N sing N 581 N sing N 582 N sing N 583 N sing N 584 N sing N 585 N sing N 586 N sing N 587 N doub N 588 N sing N 589 N sing N 590 N sing N 591 N sing N 592 N sing N 593 N sing N 594 N sing N 595 N sing N 596 N sing N 597 N sing N 598 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 32 3877 3886 10.1093/nar/gkh701 15273274 Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by HhaI methyltransferase 2004 10.2210/pdb1skm/pdb pdb_00001skm 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-10-20 ADSC QUANTUM 4 Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 1.1 1.0 X26C NSLS 1.1 SYNCHROTRON NSLS BEAMLINE X26C 3927.561 5'-D(*TP*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3' 1 syn polymer 3892.561 5'-D(*T*GP*TP*CP*AP*GP*(HCX)P*GP*CP*AP*TP*GP*G)-3' 1 syn polymer 37042.207 Modification methylase HhaI 2.1.1.37 1 man polymer 384.411 S-ADENOSYL-L-HOMOCYSTEINE 1 syn non-polymer 18.015 water 257 nat water Cytosine-specific methyltransferase HhaI, M.HhaI no no (DT)(DC)(DC)(DA)(DT)(DG)(DC)(DG)(DC)(DT)(DG)(DA)(DC) TCCATGCGCTGAC C polydeoxyribonucleotide no yes (DT)(DG)(DT)(DC)(DA)(DG)(HCX)(DG)(DC)(DA)(DT)(DG)(DG) TGTCAGXGCATGG D polydeoxyribonucleotide no no MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFP CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIP QKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER IYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGS SLNFKPY MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFP CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIP QKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER IYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGS SLNFKPY A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Haemophilus Escherichia sample HHAIM 726 Haemophilus haemolyticus 562 Escherichia coli 1 3.08 60.04 VAPOR DIFFUSION, HANGING DROP 6.5 PEG 6000, sodium cacodylate, magnesium acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K 289 PEG 6000 1 sodium cacodylate 1 magnesium acetate 1 -9.039 1 19 C 2 D 13 0.335 C_DC2:DG13_D 1 6.928 -0.241 -0.348 -0.144 -5.644 1 19 C 3 D 12 -2.520 C_DC3:DG12_D 2 6.138 0.130 -0.033 -0.181 -13.022 1 20 C 4 D 11 5.699 C_DA4:DT11_D 3 -2.210 -0.080 -0.325 0.035 6.678 1 20 C 5 D 10 0.588 C_DT5:DA10_D 4 0.000 0.047 -0.145 -0.056 11.377 1 19 C 6 D 9 -4.927 C_DG6:DC9_D 5 3.277 -0.127 0.024 -0.153 11.501 1 19 C 7 D 8 -4.921 C_DC7:DG8_D 6 -6.153 0.066 -0.217 -0.138 6.395 1 19 C 9 D 6 1.453 C_DC9:DG6_D 7 -10.749 0.106 -0.082 -0.062 4.766 1 20 C 10 D 5 5.532 C_DT10:DA5_D 8 -9.406 -0.243 -0.034 0.065 3.539 1 19 C 11 D 4 -0.409 C_DG11:DC4_D 9 7.767 -0.313 -0.124 -0.118 10.309 1 20 C 12 D 3 1.064 C_DA12:DT3_D 10 -0.746 0.027 -0.098 -0.111 16.649 1 19 C 13 D 2 -0.586 C_DC13:DG2_D 11 -10.297 0.857 -0.266 -0.488 3.452 32.871 C C 2 3 3.799 D D 13 12 3.480 2.148 -0.761 -0.748 CC_DC2DC3:DG12DG13_DD 1 -1.291 2.283 32.778 -1.712 1.111 3.326 37.494 C C 3 4 8.907 D D 12 11 3.406 5.685 0.527 -0.568 CC_DC3DA4:DT11DG12_DD 2 5.573 -8.732 36.669 -1.659 -0.060 2.825 26.333 C C 4 5 7.139 D D 11 10 2.869 3.244 -0.493 -0.166 CC_DA4DT5:DA10DT11_DD 3 0.186 -0.410 26.135 -1.125 1.127 3.290 38.157 C C 5 6 0.261 D D 10 9 3.198 0.170 -0.943 0.441 CC_DT5DG6:DC9DA10_DD 4 -4.747 7.279 37.871 0.654 0.846 3.690 34.135 C C 6 7 -20.856 D D 9 8 3.614 -11.995 1.223 -0.805 CC_DG6DC7:DG8DC9_DD 5 0.555 -0.965 32.012 0.824 -1.982 7.243 56.272 C C 7 9 2.611 D D 8 6 7.265 2.459 -0.056 0.419 CC_DC7DC9:DG6DG8_DD 6 5.343 -5.674 55.989 0.134 0.732 3.340 34.812 C C 9 10 3.916 D D 6 5 3.401 2.341 -0.224 -0.744 CC_DC9DT10:DA5DG6_DD 7 0.666 -1.114 34.730 -1.611 0.479 3.446 38.135 C C 10 11 1.303 D D 5 4 3.440 0.852 0.102 0.291 CC_DT10DG11:DC4DA5_DD 8 -0.139 0.213 38.126 0.331 -0.175 3.037 28.042 C C 11 12 14.132 D D 4 3 3.269 6.780 -0.303 -0.631 CC_DG11DA12:DT3DC4_DD 9 -1.431 2.982 27.189 -2.869 0.294 2.990 33.942 C C 12 13 4.254 D D 3 2 3.224 2.476 0.791 -1.676 CC_DA12DC13:DG2DT3_DD 10 -3.841 6.598 33.642 -3.249 -1.942 chem_comp_atom chem_comp_bond database_2 struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2004-08-24 1 1 2008-04-29 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2004-03-05 REL SAH S-ADENOSYL-L-HOMOCYSTEINE HOH water SAH 328 4 SAH SAH 328 A HOH 361 5 HOH HOH 361 C HOH 364 5 HOH HOH 364 C HOH 368 5 HOH HOH 368 C HOH 371 5 HOH HOH 371 C HOH 391 5 HOH HOH 391 C HOH 399 5 HOH HOH 399 C HOH 427 5 HOH HOH 427 C HOH 429 5 HOH HOH 429 C HOH 471 5 HOH HOH 471 C HOH 474 5 HOH HOH 474 C HOH 483 5 HOH HOH 483 C HOH 484 5 HOH HOH 484 C HOH 493 5 HOH HOH 493 C HOH 500 5 HOH HOH 500 C HOH 582 5 HOH HOH 582 C HOH 587 5 HOH HOH 587 C HOH 591 5 HOH HOH 591 C HOH 639 5 HOH HOH 639 C HOH 654 5 HOH HOH 654 C HOH 660 5 HOH HOH 660 C HOH 671 5 HOH HOH 671 C HOH 680 5 HOH HOH 680 C HOH 681 5 HOH HOH 681 C HOH 689 5 HOH HOH 689 C HOH 702 5 HOH HOH 702 C HOH 703 5 HOH HOH 703 C HOH 360 5 HOH HOH 360 D HOH 414 5 HOH HOH 414 D HOH 416 5 HOH HOH 416 D HOH 446 5 HOH HOH 446 D HOH 492 5 HOH HOH 492 D HOH 499 5 HOH HOH 499 D HOH 600 5 HOH HOH 600 D HOH 626 5 HOH HOH 626 D HOH 637 5 HOH HOH 637 D HOH 649 5 HOH HOH 649 D HOH 667 5 HOH HOH 667 D HOH 679 5 HOH HOH 679 D HOH 682 5 HOH HOH 682 D HOH 329 5 HOH HOH 329 A HOH 330 5 HOH HOH 330 A HOH 331 5 HOH HOH 331 A HOH 332 5 HOH HOH 332 A HOH 333 5 HOH HOH 333 A HOH 334 5 HOH HOH 334 A HOH 335 5 HOH HOH 335 A HOH 336 5 HOH HOH 336 A HOH 337 5 HOH HOH 337 A HOH 338 5 HOH HOH 338 A HOH 339 5 HOH HOH 339 A HOH 341 5 HOH HOH 341 A HOH 342 5 HOH HOH 342 A HOH 343 5 HOH HOH 343 A HOH 344 5 HOH HOH 344 A HOH 346 5 HOH HOH 346 A HOH 347 5 HOH HOH 347 A HOH 348 5 HOH HOH 348 A HOH 349 5 HOH HOH 349 A HOH 350 5 HOH HOH 350 A HOH 352 5 HOH HOH 352 A HOH 353 5 HOH HOH 353 A HOH 354 5 HOH HOH 354 A HOH 356 5 HOH HOH 356 A HOH 357 5 HOH HOH 357 A HOH 358 5 HOH HOH 358 A HOH 359 5 HOH HOH 359 A HOH 362 5 HOH HOH 362 A HOH 363 5 HOH HOH 363 A HOH 365 5 HOH HOH 365 A HOH 366 5 HOH HOH 366 A HOH 367 5 HOH HOH 367 A HOH 369 5 HOH HOH 369 A HOH 370 5 HOH HOH 370 A HOH 372 5 HOH HOH 372 A HOH 373 5 HOH HOH 373 A HOH 375 5 HOH HOH 375 A HOH 376 5 HOH HOH 376 A HOH 377 5 HOH HOH 377 A HOH 378 5 HOH HOH 378 A HOH 379 5 HOH HOH 379 A HOH 380 5 HOH HOH 380 A HOH 381 5 HOH HOH 381 A HOH 382 5 HOH HOH 382 A HOH 384 5 HOH HOH 384 A HOH 385 5 HOH HOH 385 A HOH 386 5 HOH HOH 386 A HOH 387 5 HOH HOH 387 A HOH 389 5 HOH HOH 389 A HOH 393 5 HOH HOH 393 A HOH 394 5 HOH HOH 394 A HOH 396 5 HOH HOH 396 A HOH 397 5 HOH HOH 397 A HOH 398 5 HOH HOH 398 A HOH 403 5 HOH HOH 403 A HOH 404 5 HOH HOH 404 A HOH 406 5 HOH HOH 406 A HOH 407 5 HOH HOH 407 A HOH 408 5 HOH HOH 408 A HOH 410 5 HOH HOH 410 A HOH 412 5 HOH HOH 412 A HOH 413 5 HOH HOH 413 A HOH 415 5 HOH HOH 415 A HOH 417 5 HOH HOH 417 A HOH 418 5 HOH HOH 418 A HOH 419 5 HOH HOH 419 A HOH 420 5 HOH HOH 420 A HOH 424 5 HOH HOH 424 A HOH 425 5 HOH HOH 425 A HOH 426 5 HOH HOH 426 A HOH 428 5 HOH HOH 428 A HOH 430 5 HOH HOH 430 A HOH 431 5 HOH HOH 431 A HOH 433 5 HOH HOH 433 A HOH 434 5 HOH HOH 434 A HOH 435 5 HOH HOH 435 A HOH 437 5 HOH HOH 437 A HOH 439 5 HOH HOH 439 A HOH 440 5 HOH HOH 440 A HOH 441 5 HOH HOH 441 A HOH 444 5 HOH HOH 444 A HOH 445 5 HOH HOH 445 A HOH 447 5 HOH HOH 447 A HOH 448 5 HOH HOH 448 A HOH 449 5 HOH HOH 449 A HOH 450 5 HOH HOH 450 A HOH 453 5 HOH HOH 453 A HOH 455 5 HOH HOH 455 A HOH 456 5 HOH HOH 456 A HOH 457 5 HOH HOH 457 A HOH 458 5 HOH HOH 458 A HOH 460 5 HOH HOH 460 A HOH 462 5 HOH HOH 462 A HOH 463 5 HOH HOH 463 A HOH 464 5 HOH HOH 464 A HOH 465 5 HOH HOH 465 A HOH 466 5 HOH HOH 466 A HOH 467 5 HOH HOH 467 A HOH 469 5 HOH HOH 469 A HOH 472 5 HOH HOH 472 A HOH 473 5 HOH HOH 473 A HOH 480 5 HOH HOH 480 A HOH 485 5 HOH HOH 485 A HOH 487 5 HOH HOH 487 A HOH 488 5 HOH HOH 488 A HOH 489 5 HOH HOH 489 A HOH 494 5 HOH HOH 494 A HOH 495 5 HOH HOH 495 A HOH 497 5 HOH HOH 497 A HOH 498 5 HOH HOH 498 A HOH 502 5 HOH HOH 502 A HOH 504 5 HOH HOH 504 A HOH 505 5 HOH HOH 505 A HOH 508 5 HOH HOH 508 A HOH 510 5 HOH HOH 510 A HOH 511 5 HOH HOH 511 A HOH 512 5 HOH HOH 512 A HOH 513 5 HOH HOH 513 A HOH 516 5 HOH HOH 516 A HOH 517 5 HOH HOH 517 A HOH 518 5 HOH HOH 518 A HOH 523 5 HOH HOH 523 A HOH 524 5 HOH HOH 524 A HOH 525 5 HOH HOH 525 A HOH 532 5 HOH HOH 532 A HOH 534 5 HOH HOH 534 A HOH 536 5 HOH HOH 536 A HOH 541 5 HOH HOH 541 A HOH 542 5 HOH HOH 542 A HOH 543 5 HOH HOH 543 A HOH 545 5 HOH HOH 545 A HOH 554 5 HOH HOH 554 A HOH 555 5 HOH HOH 555 A HOH 556 5 HOH HOH 556 A HOH 557 5 HOH HOH 557 A HOH 560 5 HOH HOH 560 A HOH 564 5 HOH HOH 564 A HOH 565 5 HOH HOH 565 A HOH 566 5 HOH HOH 566 A HOH 570 5 HOH HOH 570 A HOH 571 5 HOH HOH 571 A HOH 576 5 HOH HOH 576 A HOH 577 5 HOH HOH 577 A HOH 578 5 HOH HOH 578 A HOH 579 5 HOH HOH 579 A HOH 580 5 HOH HOH 580 A HOH 581 5 HOH HOH 581 A HOH 583 5 HOH HOH 583 A HOH 584 5 HOH HOH 584 A HOH 585 5 HOH HOH 585 A HOH 586 5 HOH HOH 586 A HOH 589 5 HOH HOH 589 A HOH 590 5 HOH HOH 590 A HOH 592 5 HOH HOH 592 A HOH 593 5 HOH HOH 593 A HOH 594 5 HOH HOH 594 A HOH 595 5 HOH HOH 595 A HOH 596 5 HOH HOH 596 A HOH 597 5 HOH HOH 597 A HOH 598 5 HOH HOH 598 A HOH 599 5 HOH HOH 599 A HOH 602 5 HOH HOH 602 A HOH 604 5 HOH HOH 604 A HOH 606 5 HOH HOH 606 A HOH 607 5 HOH HOH 607 A HOH 609 5 HOH HOH 609 A HOH 610 5 HOH HOH 610 A HOH 611 5 HOH HOH 611 A HOH 613 5 HOH HOH 613 A HOH 615 5 HOH HOH 615 A HOH 616 5 HOH HOH 616 A HOH 619 5 HOH HOH 619 A HOH 624 5 HOH HOH 624 A HOH 625 5 HOH HOH 625 A HOH 627 5 HOH HOH 627 A HOH 631 5 HOH HOH 631 A HOH 632 5 HOH HOH 632 A HOH 640 5 HOH HOH 640 A HOH 641 5 HOH HOH 641 A HOH 643 5 HOH HOH 643 A HOH 644 5 HOH HOH 644 A HOH 645 5 HOH HOH 645 A HOH 647 5 HOH HOH 647 A HOH 656 5 HOH HOH 656 A HOH 659 5 HOH HOH 659 A HOH 665 5 HOH HOH 665 A HOH 666 5 HOH HOH 666 A HOH 668 5 HOH HOH 668 A HOH 669 5 HOH HOH 669 A HOH 670 5 HOH HOH 670 A HOH 672 5 HOH HOH 672 A HOH 673 5 HOH HOH 673 A HOH 674 5 HOH HOH 674 A HOH 675 5 HOH HOH 675 A HOH 676 5 HOH HOH 676 A HOH 677 5 HOH HOH 677 A HOH 678 5 HOH HOH 678 A HOH 683 5 HOH HOH 683 A HOH 684 5 HOH HOH 684 A HOH 685 5 HOH HOH 685 A HOH 686 5 HOH HOH 686 A HOH 687 5 HOH HOH 687 A HOH 688 5 HOH HOH 688 A HOH 690 5 HOH HOH 690 A HOH 691 5 HOH HOH 691 A HOH 692 5 HOH HOH 692 A HOH 693 5 HOH HOH 693 A HOH 694 5 HOH HOH 694 A HOH 695 5 HOH HOH 695 A HOH 696 5 HOH HOH 696 A HOH 697 5 HOH HOH 697 A HOH 698 5 HOH HOH 698 A HOH 699 5 HOH HOH 699 A HOH 700 5 HOH HOH 700 A HOH 701 5 HOH HOH 701 A HOH 704 5 HOH HOH 704 A HOH 705 5 HOH HOH 705 A HOH 706 5 HOH HOH 706 A T 1 n 1 DT 1 C C 2 n 2 DC 2 C C 3 n 3 DC 3 C A 4 n 4 DA 4 C T 5 n 5 DT 5 C G 6 n 6 DG 6 C C 7 n 7 DC 7 C G 8 n 8 DG 8 C C 9 n 9 DC 9 C T 10 n 10 DT 10 C G 11 n 11 DG 11 C A 12 n 12 DA 12 C C 13 n 13 DC 13 C n 1 1 D G 2 n 2 DG 2 D T 3 n 3 DT 3 D C 4 n 4 DC 4 D A 5 n 5 DA 5 D G 6 n 6 DG 6 D SCR 7 n 7 HCX 7 D G 8 n 8 DG 8 D C 9 n 9 DC 9 D A 10 n 10 DA 10 D T 11 n 11 DT 11 D G 12 n 12 DG 12 D G 13 n 13 DG 13 D MET 1 n 1 MET 1 A ILE 2 n 2 ILE 2 A GLU 3 n 3 GLU 3 A ILE 4 n 4 ILE 4 A ALA 5 n 5 LYS 5 A ALA 6 n 6 ASP 6 A LYS 7 n 7 LYS 7 A GLN 8 n 8 GLN 8 A LEU 9 n 9 LEU 9 A THR 10 n 10 THR 10 A GLY 11 n 11 GLY 11 A LEU 12 n 12 LEU 12 A ARG 13 n 13 ARG 13 A PHE 14 n 14 PHE 14 A ILE 15 n 15 ILE 15 A ASP 16 n 16 ASP 16 A LEU 17 n 17 LEU 17 A PHE 18 n 18 PHE 18 A ALA 19 n 19 ALA 19 A GLY 20 n 20 GLY 20 A LEU 21 n 21 LEU 21 A GLY 22 n 22 GLY 22 A GLY 23 n 23 GLY 23 A PHE 24 n 24 PHE 24 A ARG 25 n 25 ARG 25 A LEU 26 n 26 LEU 26 A ALA 27 n 27 ALA 27 A LEU 28 n 28 LEU 28 A GLU 29 n 29 GLU 29 A SER 30 n 30 SER 30 A CYS 31 n 31 CYS 31 A GLY 32 n 32 GLY 32 A ALA 33 n 33 ALA 33 A GLU 34 n 34 GLU 34 A CYS 35 n 35 CYS 35 A VAL 36 n 36 VAL 36 A TYR 37 n 37 TYR 37 A SER 38 n 38 SER 38 A ASN 39 n 39 ASN 39 A GLU 40 n 40 GLU 40 A TRP 41 n 41 TRP 41 A ASP 42 n 42 ASP 42 A LYS 43 n 43 LYS 43 A TYR 44 n 44 TYR 44 A ALA 45 n 45 ALA 45 A GLN 46 n 46 GLN 46 A GLU 47 n 47 GLU 47 A VAL 48 n 48 VAL 48 A TYR 49 n 49 TYR 49 A GLU 50 n 50 GLU 50 A MET 51 n 51 MET 51 A ASN 52 n 52 ASN 52 A PHE 53 n 53 PHE 53 A GLY 54 n 54 GLY 54 A GLU 55 n 55 GLU 55 A LYS 56 n 56 LYS 56 A PRO 57 n 57 PRO 57 A GLU 58 n 58 GLU 58 A GLY 59 n 59 GLY 59 A ASP 60 n 60 ASP 60 A ILE 61 n 61 ILE 61 A THR 62 n 62 THR 62 A GLN 63 n 63 GLN 63 A VAL 64 n 64 VAL 64 A ASN 65 n 65 ASN 65 A GLU 66 n 66 GLU 66 A LYS 67 n 67 LYS 67 A THR 68 n 68 THR 68 A ILE 69 n 69 ILE 69 A PRO 70 n 70 PRO 70 A ASP 71 n 71 ASP 71 A HIS 72 n 72 HIS 72 A ASP 73 n 73 ASP 73 A ILE 74 n 74 ILE 74 A LEU 75 n 75 LEU 75 A CYS 76 n 76 CYS 76 A ALA 77 n 77 ALA 77 A GLY 78 n 78 GLY 78 A PHE 79 n 79 PHE 79 A PRO 80 n 80 PRO 80 A CYS 81 n 81 CYS 81 A GLN 82 n 82 GLN 82 A ALA 83 n 83 ALA 83 A PHE 84 n 84 PHE 84 A SER 85 n 85 SER 85 A ILE 86 n 86 ILE 86 A SER 87 n 87 SER 87 A GLY 88 n 88 GLY 88 A LYS 89 n 89 LYS 89 A GLN 90 n 90 GLN 90 A LYS 91 n 91 LYS 91 A GLY 92 n 92 GLY 92 A PHE 93 n 93 PHE 93 A GLU 94 n 94 GLU 94 A ASP 95 n 95 ASP 95 A SER 96 n 96 SER 96 A ARG 97 n 97 ARG 97 A GLY 98 n 98 GLY 98 A THR 99 n 99 THR 99 A LEU 100 n 100 LEU 100 A PHE 101 n 101 PHE 101 A PHE 102 n 102 PHE 102 A ASP 103 n 103 ASP 103 A ILE 104 n 104 ILE 104 A ALA 105 n 105 ALA 105 A ARG 106 n 106 ARG 106 A ILE 107 n 107 ILE 107 A VAL 108 n 108 VAL 108 A ARG 109 n 109 ARG 109 A GLU 110 n 110 GLU 110 A LYS 111 n 111 LYS 111 A ALA 112 n 112 LYS 112 A PRO 113 n 113 PRO 113 A LYS 114 n 114 LYS 114 A VAL 115 n 115 VAL 115 A VAL 116 n 116 VAL 116 A PHE 117 n 117 PHE 117 A MET 118 n 118 MET 118 A GLU 119 n 119 GLU 119 A ASN 120 n 120 ASN 120 A VAL 121 n 121 VAL 121 A LYS 122 n 122 LYS 122 A ASN 123 n 123 ASN 123 A PHE 124 n 124 PHE 124 A ALA 125 n 125 ALA 125 A SER 126 n 126 SER 126 A HIS 127 n 127 HIS 127 A ASP 128 n 128 ASP 128 A ASN 129 n 129 ASN 129 A GLY 130 n 130 GLY 130 A ASN 131 n 131 ASN 131 A THR 132 n 132 THR 132 A LEU 133 n 133 LEU 133 A GLU 134 n 134 GLU 134 A VAL 135 n 135 VAL 135 A VAL 136 n 136 VAL 136 A LYS 137 n 137 LYS 137 A ASN 138 n 138 ASN 138 A THR 139 n 139 THR 139 A MET 140 n 140 MET 140 A ASN 141 n 141 ASN 141 A ALA 142 n 142 GLU 142 A LEU 143 n 143 LEU 143 A ASP 144 n 144 ASP 144 A TYR 145 n 145 TYR 145 A SER 146 n 146 SER 146 A PHE 147 n 147 PHE 147 A HIS 148 n 148 HIS 148 A ALA 149 n 149 ALA 149 A LYS 150 n 150 LYS 150 A VAL 151 n 151 VAL 151 A LEU 152 n 152 LEU 152 A ASN 153 n 153 ASN 153 A ALA 154 n 154 ALA 154 A LEU 155 n 155 LEU 155 A ASP 156 n 156 ASP 156 A TYR 157 n 157 TYR 157 A GLY 158 n 158 GLY 158 A ILE 159 n 159 ILE 159 A PRO 160 n 160 PRO 160 A GLN 161 n 161 GLN 161 A LYS 162 n 162 LYS 162 A ARG 163 n 163 ARG 163 A GLU 164 n 164 GLU 164 A ARG 165 n 165 ARG 165 A ILE 166 n 166 ILE 166 A TYR 167 n 167 TYR 167 A MET 168 n 168 MET 168 A ILE 169 n 169 ILE 169 A CYS 170 n 170 CYS 170 A PHE 171 n 171 PHE 171 A ARG 172 n 172 ARG 172 A ASN 173 n 173 ASN 173 A ASP 174 n 174 ASP 174 A LEU 175 n 175 LEU 175 A ASN 176 n 176 ASN 176 A ILE 177 n 177 ILE 177 A GLN 178 n 178 GLN 178 A ASN 179 n 179 ASN 179 A PHE 180 n 180 PHE 180 A GLN 181 n 181 GLN 181 A PHE 182 n 182 PHE 182 A PRO 183 n 183 PRO 183 A LYS 184 n 184 LYS 184 A PRO 185 n 185 PRO 185 A PHE 186 n 186 PHE 186 A GLU 187 n 187 GLU 187 A LEU 188 n 188 LEU 188 A ASN 189 n 189 ASN 189 A THR 190 n 190 THR 190 A PHE 191 n 191 PHE 191 A VAL 192 n 192 VAL 192 A LYS 193 n 193 LYS 193 A ASP 194 n 194 ASP 194 A LEU 195 n 195 LEU 195 A LEU 196 n 196 LEU 196 A LEU 197 n 197 LEU 197 A PRO 198 n 198 PRO 198 A ASP 199 n 199 ASP 199 A SER 200 n 200 SER 200 A GLU 201 n 201 GLU 201 A VAL 202 n 202 VAL 202 A GLU 203 n 203 GLU 203 A HIS 204 n 204 HIS 204 A LEU 205 n 205 LEU 205 A VAL 206 n 206 VAL 206 A ILE 207 n 207 ILE 207 A ASP 208 n 208 ASP 208 A ARG 209 n 209 ARG 209 A LYS 210 n 210 LYS 210 A ASP 211 n 211 ASP 211 A LEU 212 n 212 LEU 212 A VAL 213 n 213 VAL 213 A MET 214 n 214 MET 214 A THR 215 n 215 THR 215 A ASN 216 n 216 ASN 216 A GLN 217 n 217 GLN 217 A GLU 218 n 218 GLU 218 A ILE 219 n 219 ILE 219 A GLU 220 n 220 GLU 220 A GLN 221 n 221 GLN 221 A THR 222 n 222 THR 222 A THR 223 n 223 THR 223 A PRO 224 n 224 PRO 224 A LYS 225 n 225 LYS 225 A THR 226 n 226 THR 226 A VAL 227 n 227 VAL 227 A ARG 228 n 228 ARG 228 A LEU 229 n 229 LEU 229 A GLY 230 n 230 GLY 230 A ILE 231 n 231 ILE 231 A VAL 232 n 232 VAL 232 A GLY 233 n 233 GLY 233 A LYS 234 n 234 LYS 234 A GLY 235 n 235 GLY 235 A GLY 236 n 236 GLY 236 A GLN 237 n 237 GLN 237 A GLY 238 n 238 GLY 238 A GLU 239 n 239 GLU 239 A ARG 240 n 240 ARG 240 A ILE 241 n 241 ILE 241 A TYR 242 n 242 TYR 242 A SER 243 n 243 SER 243 A THR 244 n 244 THR 244 A ARG 245 n 245 ARG 245 A GLY 246 n 246 GLY 246 A ILE 247 n 247 ILE 247 A ALA 248 n 248 ALA 248 A ILE 249 n 249 ILE 249 A THR 250 n 250 THR 250 A LEU 251 n 251 LEU 251 A SER 252 n 252 SER 252 A ALA 253 n 253 ALA 253 A TYR 254 n 254 TYR 254 A GLY 255 n 255 GLY 255 A GLY 256 n 256 GLY 256 A GLY 257 n 257 GLY 257 A ILE 258 n 258 ILE 258 A PHE 259 n 259 PHE 259 A ALA 260 n 260 ALA 260 A LYS 261 n 261 LYS 261 A THR 262 n 262 THR 262 A GLY 263 n 263 GLY 263 A GLY 264 n 264 GLY 264 A TYR 265 n 265 TYR 265 A LEU 266 n 266 LEU 266 A VAL 267 n 267 VAL 267 A ASN 268 n 268 ASN 268 A GLY 269 n 269 GLY 269 A LYS 270 n 270 LYS 270 A THR 271 n 271 THR 271 A ARG 272 n 272 ARG 272 A LYS 273 n 273 LYS 273 A LEU 274 n 274 LEU 274 A HIS 275 n 275 HIS 275 A PRO 276 n 276 PRO 276 A ARG 277 n 277 ARG 277 A GLU 278 n 278 GLU 278 A CYS 279 n 279 CYS 279 A ALA 280 n 280 ALA 280 A ARG 281 n 281 ARG 281 A VAL 282 n 282 VAL 282 A MET 283 n 283 MET 283 A GLY 284 n 284 GLY 284 A TYR 285 n 285 TYR 285 A PRO 286 n 286 PRO 286 A ASP 287 n 287 ASP 287 A SER 288 n 288 SER 288 A TYR 289 n 289 TYR 289 A LYS 290 n 290 LYS 290 A VAL 291 n 291 VAL 291 A HIS 292 n 292 HIS 292 A PRO 293 n 293 PRO 293 A SER 294 n 294 SER 294 A THR 295 n 295 THR 295 A SER 296 n 296 SER 296 A GLN 297 n 297 GLN 297 A ALA 298 n 298 ALA 298 A TYR 299 n 299 TYR 299 A LYS 300 n 300 LYS 300 A GLN 301 n 301 GLN 301 A PHE 302 n 302 PHE 302 A GLY 303 n 303 GLY 303 A ASN 304 n 304 ASN 304 A SER 305 n 305 SER 305 A VAL 306 n 306 VAL 306 A VAL 307 n 307 VAL 307 A ILE 308 n 308 ILE 308 A ASN 309 n 309 ASN 309 A VAL 310 n 310 VAL 310 A LEU 311 n 311 LEU 311 A GLN 312 n 312 GLN 312 A TYR 313 n 313 TYR 313 A ILE 314 n 314 ILE 314 A ALA 315 n 315 ALA 315 A TYR 316 n 316 TYR 316 A ASN 317 n 317 ASN 317 A ILE 318 n 318 ILE 318 A GLY 319 n 319 GLY 319 A SER 320 n 320 SER 320 A SER 321 n 321 SER 321 A LEU 322 n 322 LEU 322 A ASN 323 n 323 ASN 323 A PHE 324 n 324 PHE 324 A LYS 325 n 325 LYS 325 A PRO 326 n 326 PRO 326 A TYR 327 n 327 TYR 327 A author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 37 C O TYR 37 A N ASP 16 C N ASP 16 A N ILE 15 C N ILE 15 A O CYS 76 C O CYS 76 A N LEU 75 C N LEU 75 A O PHE 117 C O PHE 117 A N MET 118 C N MET 118 A O MET 168 C O MET 168 A O ILE 169 C O ILE 169 A N HIS 148 C N HIS 148 A N VAL 213 C N VAL 213 A O ILE 231 C O ILE 231 A N LEU 229 C N LEU 229 A O ILE 241 C O ILE 241 A N TYR 242 C N TYR 242 A O GLY 264 C O GLY 264 A N VAL 267 C N VAL 267 A O LYS 270 C O LYS 270 1 D P DG 2 B P DG 2 1 Y 1 D OP1 DG 2 B OP1 DG 2 1 Y 1 D OP2 DG 2 B OP2 DG 2 1 Y 1 A CG LYS 5 C CG LYS 5 1 Y 1 A CD LYS 5 C CD LYS 5 1 Y 1 A CE LYS 5 C CE LYS 5 1 Y 1 A NZ LYS 5 C NZ LYS 5 1 Y 1 A CG ASP 6 C CG ASP 6 1 Y 1 A OD1 ASP 6 C OD1 ASP 6 1 Y 1 A OD2 ASP 6 C OD2 ASP 6 1 Y 1 A CG LYS 112 C CG LYS 112 1 Y 1 A CD LYS 112 C CD LYS 112 1 Y 1 A CE LYS 112 C CE LYS 112 1 Y 1 A NZ LYS 112 C NZ LYS 112 1 Y 1 A CG GLU 142 C CG GLU 142 1 Y 1 A CD GLU 142 C CD GLU 142 1 Y 1 A OE1 GLU 142 C OE1 GLU 142 1 Y 1 A OE2 GLU 142 C OE2 GLU 142 1 Y 1 D DT 1 B DT 1 1 Y 1 C DC 9 0.067 SIDE CHAIN 1 D DG 2 0.061 SIDE CHAIN 1 D DG 12 0.057 SIDE CHAIN 1 7.63 1.10 109.80 117.43 C C C C5' C4' O4' DC DC DC 9 9 9 N 1 2.25 0.30 108.30 110.55 C C C O4' C1' N1 DC DC DC 9 9 9 N 1 -12.91 2.10 120.10 107.19 A A A CA C O TYR TYR TYR 327 327 327 N 1 A A C O TYR TYR 327 327 0.196 0.019 1.229 1.425 N 1 A A C OXT TYR TYR 327 327 -0.128 0.019 1.229 1.101 N 1 A TYR 37 -173.18 138.67 1 A ASP 60 -10.64 101.59 1 A LYS 112 38.22 76.25 1 A HIS 127 -38.55 135.15 1 A ASP 144 76.20 42.29 1 A PRO 224 -78.43 46.74 1 A PHE 259 -104.59 42.39 1 A LYS 261 69.03 -11.13 0.74 1.85 -2.58 2.30 0.00 0.00 0.221 0.183 0.183 2.2 24.53 1134 23477 23477 81.9 random 1 Anisotropic THROUGHOUT 0 MOLECULAR REPLACEMENT Engh & Huber 0.29 0.24 25.0 0.26 0.23 2.2 24.53 257 3373 26 499 2591 0.007 1.2 22.4 1.60 0.303 0.065 0.261 2.25 22 34.0 13.5 2.2 24.53 1SKM 24477 23477 0 -3 0.067 1 18.4 2.9 81.9 0.179 2.20 2.25 689 36.9 data collection CAD4 data scaling SCALEPACK phasing GLRF refinement CNS data reduction CAD4 HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N A GLY 22 C GLY 22 HELX_P A CYS 31 C CYS 31 1 1 10 A ASP 42 C ASP 42 HELX_P A GLY 54 C GLY 54 1 2 13 A ASP 60 C ASP 60 HELX_P A VAL 64 C VAL 64 5 3 5 A ASN 65 C ASN 65 HELX_P A ILE 69 C ILE 69 5 4 5 A LYS 91 C LYS 91 HELX_P A ASP 95 C ASP 95 5 5 5 A THR 99 C THR 99 HELX_P A LYS 112 C LYS 112 1 6 14 A ASN 123 C ASN 123 HELX_P A SER 126 C SER 126 5 7 4 A HIS 127 C HIS 127 HELX_P A ASN 129 C ASN 129 5 8 3 A GLY 130 C GLY 130 HELX_P A LEU 143 C LEU 143 1 9 14 A LEU 155 C LEU 155 HELX_P A GLY 158 C GLY 158 5 10 4 A ASN 173 C ASN 173 HELX_P A ASN 176 C ASN 176 5 11 4 A PHE 191 C PHE 191 HELX_P A LEU 196 C LEU 196 5 12 6 A PRO 198 C PRO 198 HELX_P A VAL 206 C VAL 206 5 13 9 A HIS 275 C HIS 275 HELX_P A MET 283 C MET 283 1 14 9 A SER 294 C SER 294 HELX_P A SER 305 C SER 305 1 15 12 A VAL 307 C VAL 307 HELX_P A PHE 324 C PHE 324 1 16 18 covale 1.605 both D DG 6 B O3' DG 6 1_555 D HCX 7 B P HCX 7 1_555 covale 1.597 one D HCX 7 B O3' HCX 7 1_555 D DG 8 B P DG 8 1_555 hydrog WATSON-CRICK C DC 2 A N3 DC 2 1_555 D DG 13 B N1 DG 13 1_555 hydrog WATSON-CRICK C DC 2 A N4 DC 2 1_555 D DG 13 B O6 DG 13 1_555 hydrog WATSON-CRICK C DC 2 A O2 DC 2 1_555 D DG 13 B N2 DG 13 1_555 hydrog WATSON-CRICK C DC 3 A N3 DC 3 1_555 D DG 12 B N1 DG 12 1_555 hydrog WATSON-CRICK C DC 3 A N4 DC 3 1_555 D DG 12 B O6 DG 12 1_555 hydrog WATSON-CRICK C DC 3 A O2 DC 3 1_555 D DG 12 B N2 DG 12 1_555 hydrog WATSON-CRICK C DA 4 A N1 DA 4 1_555 D DT 11 B N3 DT 11 1_555 hydrog WATSON-CRICK C DA 4 A N6 DA 4 1_555 D DT 11 B O4 DT 11 1_555 hydrog WATSON-CRICK C DT 5 A N3 DT 5 1_555 D DA 10 B N1 DA 10 1_555 hydrog WATSON-CRICK C DT 5 A O4 DT 5 1_555 D DA 10 B N6 DA 10 1_555 hydrog WATSON-CRICK C DG 6 A N1 DG 6 1_555 D DC 9 B N3 DC 9 1_555 hydrog WATSON-CRICK C DG 6 A N2 DG 6 1_555 D DC 9 B O2 DC 9 1_555 hydrog WATSON-CRICK C DG 6 A O6 DG 6 1_555 D DC 9 B N4 DC 9 1_555 hydrog WATSON-CRICK C DC 7 A N3 DC 7 1_555 D DG 8 B N1 DG 8 1_555 hydrog WATSON-CRICK C DC 7 A N4 DC 7 1_555 D DG 8 B O6 DG 8 1_555 hydrog WATSON-CRICK C DC 7 A O2 DC 7 1_555 D DG 8 B N2 DG 8 1_555 hydrog WATSON-CRICK C DC 9 A N3 DC 9 1_555 D DG 6 B N1 DG 6 1_555 hydrog WATSON-CRICK C DC 9 A N4 DC 9 1_555 D DG 6 B O6 DG 6 1_555 hydrog WATSON-CRICK C DC 9 A O2 DC 9 1_555 D DG 6 B N2 DG 6 1_555 hydrog WATSON-CRICK C DT 10 A N3 DT 10 1_555 D DA 5 B N1 DA 5 1_555 hydrog WATSON-CRICK C DT 10 A O4 DT 10 1_555 D DA 5 B N6 DA 5 1_555 hydrog WATSON-CRICK C DG 11 A N1 DG 11 1_555 D DC 4 B N3 DC 4 1_555 hydrog WATSON-CRICK C DG 11 A N2 DG 11 1_555 D DC 4 B O2 DC 4 1_555 hydrog WATSON-CRICK C DG 11 A O6 DG 11 1_555 D DC 4 B N4 DC 4 1_555 hydrog WATSON-CRICK C DA 12 A N1 DA 12 1_555 D DT 3 B N3 DT 3 1_555 hydrog WATSON-CRICK C DA 12 A N6 DA 12 1_555 D DT 3 B O4 DT 3 1_555 hydrog WATSON-CRICK C DC 13 A N3 DC 13 1_555 D DG 2 B N1 DG 2 1_555 hydrog WATSON-CRICK C DC 13 A N4 DC 13 1_555 D DG 2 B O6 DG 2 1_555 hydrog WATSON-CRICK C DC 13 A O2 DC 13 1_555 D DG 2 B N2 DG 2 1_555 TRANSFERASE/DNA PROTEIN-DNA COMPLEX Containing Constrained Abasic Unnatural base, TRANSFERASE-DNA COMPLEX MTH1_HAEHA UNP 3 1 P05102 MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFP CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIP QKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER IYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGS SLNFKPY 1SKM PDB 1 1SKM 1SKM PDB 2 1SKM 1 327 1SKM 1 327 P05102 A 1 1 327 1 13 1SKM 1 13 1SKM C 2 1 13 1 13 1SKM 1 13 1SKM D 3 1 13 6 5 parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A GLU 34 C GLU 34 A SER 38 C SER 38 A ARG 13 C ARG 13 A LEU 17 C LEU 17 A ILE 74 C ILE 74 A GLY 78 C GLY 78 A VAL 115 C VAL 115 A VAL 121 C VAL 121 A GLU 164 C GLU 164 A PHE 171 C PHE 171 A HIS 148 C HIS 148 A ASN 153 C ASN 153 A VAL 213 C VAL 213 A MET 214 C MET 214 A ARG 228 C ARG 228 A ILE 231 C ILE 231 A ARG 240 C ARG 240 A SER 243 C SER 243 A GLY 264 C GLY 264 A VAL 267 C VAL 267 A LYS 270 C LYS 270 A ARG 272 C ARG 272 BINDING SITE FOR RESIDUE SAH A 328 A SAH 328 Software 22 A PHE 18 C PHE 18 22 1_555 A ALA 19 C ALA 19 22 1_555 A LEU 21 C LEU 21 22 1_555 A GLY 22 C GLY 22 22 1_555 A GLY 23 C GLY 23 22 1_555 A ASN 39 C ASN 39 22 1_555 A GLU 40 C GLU 40 22 1_555 A TRP 41 C TRP 41 22 1_555 A ASP 42 C ASP 42 22 1_555 A ASP 60 C ASP 60 22 1_555 A ILE 61 C ILE 61 22 1_555 A GLY 78 C GLY 78 22 1_555 A PRO 80 C PRO 80 22 1_555 A TYR 285 C TYR 285 22 1_555 A ASN 304 C ASN 304 22 1_555 A SER 305 C SER 305 22 1_555 A HOH 332 G HOH 22 1_555 A HOH 333 G HOH 22 1_555 A HOH 338 G HOH 22 1_555 A HOH 367 G HOH 22 1_555 A HOH 384 G HOH 22 1_555 A HOH 386 G HOH 22 1_555 155 H 3 2