0.014209 0.000000 0.000000 0.000000 0.014209 0.000000 0.000000 0.000000 0.011374 0.00000 0.00000 0.00000 Schubert, M. Edge, R.E. Lario, P. Cook, M.A. Strynadka, N.C.J. Mackie, G.A. McIntosh, L.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 70.378 70.378 87.917 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 R C N 295 N O N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C N 318 N O N 319 N O N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C N 336 N C N 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub N 309 N sing Y 310 N doub N 311 N sing Y 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 341 37 54 10.1016/j.jmb.2004.05.061 15312761 Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces. 2004 10.2210/pdb1smx/pdb pdb_00001smx 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2003-08-28 ADSC QUANTUM 210 Double crystal, Si(111) SINGLE WAVELENGTH M x-ray 1 1.0781 1.0 8.2.1 ALS 1.0781 SYNCHROTRON ALS BEAMLINE 8.2.1 10704.134 Ribonuclease E 3.1.4.- S1 domain (residues 35-125) 2 man polymer 18.015 water 205 nat water RNase E no no GSHMLEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEER GNKGAALTTFISLAGS GSHMLEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEER GNKGAALTTFISLAGS A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia Escherichia coli sample RNE 562 Escherichia coli 511693 Escherichia coli BL21 BL21 PLASMID pET15b 1 2.5 51.3 VAPOR DIFFUSION, HANGING DROP 6.5 PEG 8000, sodium cacodylate, sodium acetate, glycerol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Refinement description 1 0 2004-08-17 1 1 2008-04-29 1 2 2011-07-13 1 3 2024-02-14 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details solution structure NMR assignment crystal structure RCSB Y RCSB 2004-03-09 REL REL HOH water Pb derivative structure Other experimental model HOH 4 2 HOH HOH 126 A HOH 5 2 HOH HOH 127 A HOH 7 2 HOH HOH 128 A HOH 8 2 HOH HOH 129 A HOH 10 2 HOH HOH 130 A HOH 11 2 HOH HOH 131 A HOH 12 2 HOH HOH 132 A HOH 13 2 HOH HOH 133 A HOH 15 2 HOH HOH 134 A HOH 17 2 HOH HOH 135 A HOH 20 2 HOH HOH 136 A HOH 21 2 HOH HOH 137 A HOH 22 2 HOH HOH 138 A HOH 23 2 HOH HOH 139 A HOH 24 2 HOH HOH 140 A HOH 27 2 HOH HOH 141 A HOH 28 2 HOH HOH 142 A HOH 29 2 HOH HOH 143 A HOH 33 2 HOH HOH 144 A HOH 35 2 HOH HOH 145 A HOH 36 2 HOH HOH 146 A HOH 37 2 HOH HOH 147 A HOH 38 2 HOH HOH 148 A HOH 39 2 HOH HOH 149 A HOH 40 2 HOH HOH 150 A HOH 43 2 HOH HOH 151 A HOH 44 2 HOH HOH 152 A HOH 45 2 HOH HOH 153 A HOH 49 2 HOH HOH 154 A HOH 50 2 HOH HOH 155 A HOH 51 2 HOH HOH 156 A HOH 52 2 HOH HOH 157 A HOH 53 2 HOH HOH 158 A HOH 54 2 HOH HOH 159 A HOH 55 2 HOH HOH 160 A HOH 58 2 HOH HOH 161 A HOH 60 2 HOH HOH 162 A HOH 62 2 HOH HOH 163 A HOH 65 2 HOH HOH 164 A HOH 66 2 HOH HOH 165 A HOH 68 2 HOH HOH 166 A HOH 73 2 HOH HOH 167 A HOH 74 2 HOH HOH 168 A HOH 75 2 HOH HOH 169 A HOH 76 2 HOH HOH 170 A HOH 77 2 HOH HOH 171 A HOH 81 2 HOH HOH 172 A HOH 83 2 HOH HOH 173 A HOH 84 2 HOH HOH 174 A HOH 85 2 HOH HOH 175 A HOH 86 2 HOH HOH 176 A HOH 87 2 HOH HOH 177 A HOH 88 2 HOH HOH 178 A HOH 89 2 HOH HOH 179 A HOH 90 2 HOH HOH 180 A HOH 93 2 HOH HOH 181 A HOH 94 2 HOH HOH 182 A HOH 97 2 HOH HOH 183 A HOH 98 2 HOH HOH 184 A HOH 100 2 HOH HOH 185 A HOH 101 2 HOH HOH 186 A HOH 102 2 HOH HOH 187 A HOH 113 2 HOH HOH 188 A HOH 114 2 HOH HOH 189 A HOH 116 2 HOH HOH 190 A HOH 117 2 HOH HOH 191 A HOH 118 2 HOH HOH 192 A HOH 120 2 HOH HOH 193 A HOH 121 2 HOH HOH 194 A HOH 127 2 HOH HOH 195 A HOH 133 2 HOH HOH 196 A HOH 137 2 HOH HOH 197 A HOH 139 2 HOH HOH 198 A HOH 140 2 HOH HOH 199 A HOH 141 2 HOH HOH 200 A HOH 142 2 HOH HOH 201 A HOH 143 2 HOH HOH 202 A HOH 147 2 HOH HOH 203 A HOH 148 2 HOH HOH 204 A HOH 149 2 HOH HOH 205 A HOH 150 2 HOH HOH 206 A HOH 151 2 HOH HOH 207 A HOH 154 2 HOH HOH 208 A HOH 155 2 HOH HOH 209 A HOH 160 2 HOH HOH 210 A HOH 161 2 HOH HOH 211 A HOH 168 2 HOH HOH 212 A HOH 169 2 HOH HOH 213 A HOH 170 2 HOH HOH 214 A HOH 171 2 HOH HOH 215 A HOH 173 2 HOH HOH 216 A HOH 174 2 HOH HOH 217 A HOH 175 2 HOH HOH 218 A HOH 176 2 HOH HOH 219 A HOH 177 2 HOH HOH 220 A HOH 178 2 HOH HOH 221 A HOH 179 2 HOH HOH 222 A HOH 180 2 HOH HOH 223 A HOH 181 2 HOH HOH 224 A HOH 182 2 HOH HOH 225 A HOH 183 2 HOH HOH 226 A HOH 184 2 HOH HOH 227 A HOH 186 2 HOH HOH 228 A HOH 189 2 HOH HOH 229 A HOH 190 2 HOH HOH 230 A HOH 191 2 HOH HOH 231 A HOH 192 2 HOH HOH 232 A HOH 193 2 HOH HOH 233 A HOH 195 2 HOH HOH 234 A HOH 196 2 HOH HOH 235 A HOH 197 2 HOH HOH 236 A HOH 199 2 HOH HOH 237 A HOH 201 2 HOH HOH 238 A HOH 203 2 HOH HOH 239 A HOH 205 2 HOH HOH 240 A HOH 1 2 HOH HOH 126 B HOH 2 2 HOH HOH 127 B HOH 3 2 HOH HOH 128 B HOH 6 2 HOH HOH 129 B HOH 9 2 HOH HOH 130 B HOH 14 2 HOH HOH 131 B HOH 16 2 HOH HOH 132 B HOH 18 2 HOH HOH 133 B HOH 19 2 HOH HOH 134 B HOH 25 2 HOH HOH 135 B HOH 26 2 HOH HOH 136 B HOH 30 2 HOH HOH 137 B HOH 31 2 HOH HOH 138 B HOH 32 2 HOH HOH 139 B HOH 34 2 HOH HOH 140 B HOH 41 2 HOH HOH 141 B HOH 42 2 HOH HOH 142 B HOH 46 2 HOH HOH 143 B HOH 47 2 HOH HOH 144 B HOH 48 2 HOH HOH 145 B HOH 56 2 HOH HOH 146 B HOH 57 2 HOH HOH 147 B HOH 59 2 HOH HOH 148 B HOH 61 2 HOH HOH 149 B HOH 63 2 HOH HOH 150 B HOH 64 2 HOH HOH 151 B HOH 67 2 HOH HOH 152 B HOH 69 2 HOH HOH 153 B HOH 70 2 HOH HOH 154 B HOH 71 2 HOH HOH 155 B HOH 72 2 HOH HOH 156 B HOH 78 2 HOH HOH 157 B HOH 79 2 HOH HOH 158 B HOH 80 2 HOH HOH 159 B HOH 82 2 HOH HOH 160 B HOH 91 2 HOH HOH 161 B HOH 92 2 HOH HOH 162 B HOH 95 2 HOH HOH 163 B HOH 96 2 HOH HOH 164 B HOH 99 2 HOH HOH 165 B HOH 103 2 HOH HOH 166 B HOH 104 2 HOH HOH 167 B HOH 105 2 HOH HOH 168 B HOH 106 2 HOH HOH 169 B HOH 107 2 HOH HOH 170 B HOH 108 2 HOH HOH 171 B HOH 109 2 HOH HOH 172 B HOH 110 2 HOH HOH 173 B HOH 111 2 HOH HOH 174 B HOH 112 2 HOH HOH 175 B HOH 115 2 HOH HOH 176 B HOH 119 2 HOH HOH 177 B HOH 122 2 HOH HOH 178 B HOH 123 2 HOH HOH 179 B HOH 124 2 HOH HOH 180 B HOH 125 2 HOH HOH 181 B HOH 126 2 HOH HOH 182 B HOH 128 2 HOH HOH 183 B HOH 129 2 HOH HOH 184 B HOH 130 2 HOH HOH 185 B HOH 131 2 HOH HOH 186 B HOH 132 2 HOH HOH 187 B HOH 134 2 HOH HOH 188 B HOH 135 2 HOH HOH 189 B HOH 136 2 HOH HOH 190 B HOH 138 2 HOH HOH 191 B HOH 144 2 HOH HOH 192 B HOH 145 2 HOH HOH 193 B HOH 146 2 HOH HOH 194 B HOH 152 2 HOH HOH 195 B HOH 153 2 HOH HOH 196 B HOH 156 2 HOH HOH 197 B HOH 157 2 HOH HOH 198 B HOH 158 2 HOH HOH 199 B HOH 159 2 HOH HOH 200 B HOH 162 2 HOH HOH 201 B HOH 163 2 HOH HOH 202 B HOH 164 2 HOH HOH 203 B HOH 165 2 HOH HOH 204 B HOH 166 2 HOH HOH 205 B HOH 167 2 HOH HOH 206 B HOH 172 2 HOH HOH 207 B HOH 185 2 HOH HOH 208 B HOH 187 2 HOH HOH 209 B HOH 188 2 HOH HOH 210 B HOH 194 2 HOH HOH 211 B HOH 198 2 HOH HOH 212 B HOH 200 2 HOH HOH 213 B HOH 202 2 HOH HOH 214 B HOH 204 2 HOH HOH 215 B n 1 30 A n 2 31 A n 3 32 A n 4 33 A n 5 34 A n 6 35 A n 7 36 A n 8 37 A n 9 38 A ALA 39 n 10 ALA 39 A ASN 40 n 11 ASN 40 A ILE 41 n 12 ILE 41 A TYR 42 n 13 TYR 42 A LYS 43 n 14 LYS 43 A GLY 44 n 15 GLY 44 A LYS 45 n 16 LYS 45 A ILE 46 n 17 ILE 46 A THR 47 n 18 THR 47 A ARG 48 n 19 ARG 48 A ILE 49 n 20 ILE 49 A GLU 50 n 21 GLU 50 A PRO 51 n 22 PRO 51 A SER 52 n 23 SER 52 A LEU 53 n 24 LEU 53 A GLU 54 n 25 GLU 54 A ALA 55 n 26 ALA 55 A ALA 56 n 27 ALA 56 A PHE 57 n 28 PHE 57 A VAL 58 n 29 VAL 58 A ASP 59 n 30 ASP 59 A TYR 60 n 31 TYR 60 A GLY 61 n 32 GLY 61 A ALA 62 n 33 ALA 62 A GLU 63 n 34 GLU 63 A ARG 64 n 35 ARG 64 A HIS 65 n 36 HIS 65 A GLY 66 n 37 GLY 66 A PHE 67 n 38 PHE 67 A LEU 68 n 39 LEU 68 A PRO 69 n 40 PRO 69 A LEU 70 n 41 LEU 70 A LYS 71 n 42 LYS 71 A GLU 72 n 43 GLU 72 A ILE 73 n 44 ILE 73 A ALA 74 n 45 ALA 74 A ARG 75 n 46 ARG 75 A GLU 76 n 47 GLU 76 A TYR 77 n 48 TYR 77 A PHE 78 n 49 PHE 78 A PRO 79 n 50 PRO 79 A ALA 80 n 51 ALA 80 A ASN 81 n 52 ASN 81 A TYR 82 n 53 TYR 82 A SER 83 n 54 SER 83 A ALA 84 n 55 ALA 84 A HIS 85 n 56 HIS 85 A GLY 86 n 57 GLY 86 A ARG 87 n 58 ARG 87 A PRO 88 n 59 PRO 88 A ASN 89 n 60 ASN 89 A ILE 90 n 61 ILE 90 A LYS 91 n 62 LYS 91 A ASP 92 n 63 ASP 92 A VAL 93 n 64 VAL 93 A LEU 94 n 65 LEU 94 A ARG 95 n 66 ARG 95 A GLU 96 n 67 GLU 96 A GLY 97 n 68 GLY 97 A GLN 98 n 69 GLN 98 A GLU 99 n 70 GLU 99 A VAL 100 n 71 VAL 100 A ILE 101 n 72 ILE 101 A VAL 102 n 73 VAL 102 A GLN 103 n 74 GLN 103 A ILE 104 n 75 ILE 104 A ASP 105 n 76 ASP 105 A LYS 106 n 77 LYS 106 A GLU 107 n 78 GLU 107 A GLU 108 n 79 GLU 108 A ARG 109 n 80 ARG 109 A GLY 110 n 81 GLY 110 A ASN 111 n 82 ASN 111 A LYS 112 n 83 LYS 112 A GLY 113 n 84 GLY 113 A ALA 114 n 85 ALA 114 A ALA 115 n 86 ALA 115 A LEU 116 n 87 LEU 116 A THR 117 n 88 THR 117 A THR 118 n 89 THR 118 A PHE 119 n 90 PHE 119 A ILE 120 n 91 ILE 120 A SER 121 n 92 SER 121 A LEU 122 n 93 LEU 122 A ALA 123 n 94 ALA 123 A GLY 124 n 95 GLY 124 A SER 125 n 96 SER 125 A n 1 30 B n 2 31 B n 3 32 B n 4 33 B n 5 34 B n 6 35 B n 7 36 B n 8 37 B n 9 38 B ALA 39 n 10 ALA 39 B ASN 40 n 11 ASN 40 B ILE 41 n 12 ILE 41 B TYR 42 n 13 TYR 42 B LYS 43 n 14 LYS 43 B GLY 44 n 15 GLY 44 B LYS 45 n 16 LYS 45 B ILE 46 n 17 ILE 46 B THR 47 n 18 THR 47 B ARG 48 n 19 ARG 48 B ILE 49 n 20 ILE 49 B GLU 50 n 21 GLU 50 B PRO 51 n 22 PRO 51 B SER 52 n 23 SER 52 B LEU 53 n 24 LEU 53 B GLU 54 n 25 GLU 54 B ALA 55 n 26 ALA 55 B ALA 56 n 27 ALA 56 B PHE 57 n 28 PHE 57 B VAL 58 n 29 VAL 58 B ASP 59 n 30 ASP 59 B TYR 60 n 31 TYR 60 B GLY 61 n 32 GLY 61 B ALA 62 n 33 ALA 62 B GLU 63 n 34 GLU 63 B ARG 64 n 35 ARG 64 B HIS 65 n 36 HIS 65 B GLY 66 n 37 GLY 66 B PHE 67 n 38 PHE 67 B LEU 68 n 39 LEU 68 B PRO 69 n 40 PRO 69 B LEU 70 n 41 LEU 70 B LYS 71 n 42 LYS 71 B GLU 72 n 43 GLU 72 B ILE 73 n 44 ILE 73 B ALA 74 n 45 ALA 74 B ARG 75 n 46 ARG 75 B GLU 76 n 47 GLU 76 B TYR 77 n 48 TYR 77 B PHE 78 n 49 PHE 78 B PRO 79 n 50 PRO 79 B ALA 80 n 51 ALA 80 B n 52 81 B n 53 82 B n 54 83 B n 55 84 B n 56 85 B n 57 86 B ALA 87 n 58 ARG 87 B PRO 88 n 59 PRO 88 B ASN 89 n 60 ASN 89 B ILE 90 n 61 ILE 90 B LYS 91 n 62 LYS 91 B ASP 92 n 63 ASP 92 B VAL 93 n 64 VAL 93 B LEU 94 n 65 LEU 94 B ARG 95 n 66 ARG 95 B GLU 96 n 67 GLU 96 B GLY 97 n 68 GLY 97 B GLN 98 n 69 GLN 98 B GLU 99 n 70 GLU 99 B VAL 100 n 71 VAL 100 B ILE 101 n 72 ILE 101 B VAL 102 n 73 VAL 102 B GLN 103 n 74 GLN 103 B ILE 104 n 75 ILE 104 B ASP 105 n 76 ASP 105 B LYS 106 n 77 LYS 106 B GLU 107 n 78 GLU 107 B GLU 108 n 79 GLU 108 B ARG 109 n 80 ARG 109 B GLY 110 n 81 GLY 110 B ASN 111 n 82 ASN 111 B LYS 112 n 83 LYS 112 B GLY 113 n 84 GLY 113 B ALA 114 n 85 ALA 114 B ALA 115 n 86 ALA 115 B LEU 116 n 87 LEU 116 B THR 117 n 88 THR 117 B THR 118 n 89 THR 118 B PHE 119 n 90 PHE 119 B ILE 120 n 91 ILE 120 B SER 121 n 92 SER 121 B LEU 122 n 93 LEU 122 B ALA 123 n 94 ALA 123 B GLY 124 n 95 GLY 124 B SER 125 n 96 SER 125 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 48 A N ARG 19 A O PHE 57 A O PHE 28 A N VAL 58 A N VAL 29 A O GLY 66 A O GLY 37 A N PHE 67 A N PHE 38 A O LEU 116 A O LEU 87 A O ALA 115 A O ALA 86 A N ASP 105 A N ASP 76 A O VAL 100 A O VAL 71 A N GLY 44 A N GLY 15 B N ARG 48 B N ARG 19 B O PHE 57 B O PHE 28 B N VAL 58 B N VAL 29 B O GLY 66 B O GLY 37 B N PHE 67 B N PHE 38 B O LEU 116 B O LEU 87 B O ALA 115 B O ALA 86 B N ASP 105 B N ASP 76 B O VAL 100 B O VAL 71 B N GLY 44 B N GLY 15 1 A CD LYS 91 A CD LYS 62 0 Y 1 A CE LYS 91 A CE LYS 62 0 Y 1 A NZ LYS 91 A NZ LYS 62 0 Y 1 A NE ARG 95 A NE ARG 66 0 Y 1 A CZ ARG 95 A CZ ARG 66 0 Y 1 A NH1 ARG 95 A NH1 ARG 66 0 Y 1 A NH2 ARG 95 A NH2 ARG 66 0 Y 1 A CD LYS 106 A CD LYS 77 0 Y 1 A CE LYS 106 A CE LYS 77 0 Y 1 A NZ LYS 106 A NZ LYS 77 0 Y 1 B CZ ARG 48 B CZ ARG 19 0 Y 1 B NH1 ARG 48 B NH1 ARG 19 0 Y 1 B NH2 ARG 48 B NH2 ARG 19 0 Y 1 B CG ARG 87 B CG ARG 58 1 Y 1 B CD ARG 87 B CD ARG 58 1 Y 1 B NE ARG 87 B NE ARG 58 1 Y 1 B CZ ARG 87 B CZ ARG 58 1 Y 1 B NH1 ARG 87 B NH1 ARG 58 1 Y 1 B NH2 ARG 87 B NH2 ARG 58 1 Y 1 B CD LYS 91 B CD LYS 62 0 Y 1 B CE LYS 91 B CE LYS 62 0 Y 1 B NZ LYS 91 B NZ LYS 62 0 Y 1 B NE ARG 95 B NE ARG 66 0 Y 1 B CZ ARG 95 B CZ ARG 66 0 Y 1 B NH1 ARG 95 B NH1 ARG 66 0 Y 1 B NH2 ARG 95 B NH2 ARG 66 0 Y 1 A GLY 30 A GLY 1 1 Y 1 A SER 31 A SER 2 1 Y 1 A HIS 32 A HIS 3 1 Y 1 A MET 33 A MET 4 1 Y 1 A LEU 34 A LEU 5 1 Y 1 A GLU 35 A GLU 6 1 Y 1 A GLN 36 A GLN 7 1 Y 1 A LYS 37 A LYS 8 1 Y 1 A LYS 38 A LYS 9 1 Y 1 B GLY 30 B GLY 1 1 Y 1 B SER 31 B SER 2 1 Y 1 B HIS 32 B HIS 3 1 Y 1 B MET 33 B MET 4 1 Y 1 B LEU 34 B LEU 5 1 Y 1 B GLU 35 B GLU 6 1 Y 1 B GLN 36 B GLN 7 1 Y 1 B LYS 37 B LYS 8 1 Y 1 B LYS 38 B LYS 9 1 Y 1 B ASN 81 B ASN 52 1 Y 1 B TYR 82 B TYR 53 1 Y 1 B SER 83 B SER 54 1 Y 1 B ALA 84 B ALA 55 1 Y 1 B HIS 85 B HIS 56 1 Y 1 B GLY 86 B GLY 57 1 Y 1 B B OG O SER HOH 125 138 2.14 1 B B GLY SER 124 125 -143.91 1 A ARG 95 0.235 SIDE CHAIN 1 9.18 1.40 123.60 132.78 B B B CD NE CZ ARG ARG ARG 48 48 48 N 1 15.16 2.10 111.80 126.96 B B B CG CD NE ARG ARG ARG 95 95 95 N 1 A A CG CD LYS LYS 91 91 -0.329 0.034 1.520 1.191 N 1 B B NE CZ ARG ARG 48 48 -0.288 0.013 1.326 1.038 N 1 B B CD NE ARG ARG 95 95 -0.276 0.017 1.460 1.184 N 27.342 0.82 0.00 0.00 0.82 0.00 -1.64 0.958 0.949 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.23109 0.19854 0.20009 0.20009 1.80 50 1012 19874 19874 4.8 98.99 2.833 0.087 RANDOM 1 THROUGHOUT 0.0 0.0 SAD 0.121 0.117 0.80 0.80 1.40 Pb derivative structure MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.80 50 205 1532 0 0 1327 0.013 0.021 1332 0.002 0.020 1217 1.315 1.965 1798 0.736 3.000 2829 7.073 5.000 167 0.085 0.200 196 0.005 0.020 1503 0.002 0.020 269 0.206 0.200 196 0.246 0.200 1364 0.083 0.200 840 0.156 0.200 130 0.200 0.200 3 0.272 0.200 57 0.222 0.200 27 1.073 1.500 838 1.948 2.000 1337 2.584 3.000 494 4.538 4.500 461 0.259 0.245 1.847 73 1310 20 29.2 1.8 50 1SMX 21123 20912 0.0 0.0 0.05 1 30.8 7.76 99.0 1.80 1.86 4.65 0.378 93.5 refinement REFMAC 5.1.24 data reduction DENZO data scaling SCALEPACK phasing SOLVE Crystal structure of the S1 domain of RNase E from E. coli (native) 1 N N 1 N N 2 N N 2 N N A PRO 51 A PRO 22 HELX_P A LEU 53 A LEU 24 5 1 3 A LYS 71 A LYS 42 HELX_P A ILE 73 A ILE 44 5 2 3 A ALA 74 A ALA 45 HELX_P A PHE 78 A PHE 49 5 3 5 A ASN 89 A ASN 60 HELX_P A VAL 93 A VAL 64 5 4 5 B PRO 51 B PRO 22 HELX_P B LEU 53 B LEU 24 5 5 3 B LYS 71 B LYS 42 HELX_P B ILE 73 B ILE 44 5 6 3 B ALA 74 B ALA 45 HELX_P B PHE 78 B PHE 49 5 7 5 B ASN 89 B ASN 60 HELX_P B LEU 94 B LEU 65 1 8 6 HYDROLASE OB-fold, RNA-binding, HYDROLASE RNE_ECOLI UNP 1 35 P21513 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGA ALTTFISLAGS 35 125 1SMX 35 125 P21513 A 1 6 96 35 125 1SMX 35 125 P21513 B 1 6 96 1 cloning artifact GLY 30 1SMX A P21513 UNP 1 1 cloning artifact SER 31 1SMX A P21513 UNP 2 1 cloning artifact HIS 32 1SMX A P21513 UNP 3 1 cloning artifact MET 33 1SMX A P21513 UNP 4 1 cloning artifact LEU 34 1SMX A P21513 UNP 5 2 cloning artifact GLY 30 1SMX B P21513 UNP 1 2 cloning artifact SER 31 1SMX B P21513 UNP 2 2 cloning artifact HIS 32 1SMX B P21513 UNP 3 2 cloning artifact MET 33 1SMX B P21513 UNP 4 2 cloning artifact LEU 34 1SMX B P21513 UNP 5 6 6 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A TYR 42 A TYR 13 A GLU 50 A GLU 21 A ALA 55 A ALA 26 A ASP 59 A ASP 30 A GLY 66 A GLY 37 A PRO 69 A PRO 40 A ALA 115 A ALA 86 A THR 117 A THR 88 A GLU 99 A GLU 70 A LYS 106 A LYS 77 A TYR 42 A TYR 13 A GLU 50 A GLU 21 B TYR 42 B TYR 13 B GLU 50 B GLU 21 B ALA 55 B ALA 26 B ASP 59 B ASP 30 B GLY 66 B GLY 37 B PRO 69 B PRO 40 B ALA 115 B ALA 86 B THR 117 B THR 88 B GLU 99 B GLU 70 B LYS 106 B LYS 77 B TYR 42 B TYR 13 B GLU 50 B GLU 21 92 P 41 21 2