1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Simpson, R.J.Y.
Lee, S.H.Y.
Bartle, N.
Matthews, J.M.
Mackay, J.P.
Crossley, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
279
39789
39797
10.1074/jbc.M404130200
15234987
A Classic Zinc Finger from Friend of GATA Mediates an Interaction with the Coiled-coil of Transforming Acidic Coiled-coil 3.
2004
10.2210/pdb1srk/pdb
pdb_00001srk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
3814.467
Zinc finger protein ZFPM1
residues 328-360
E330K, L336R, E349A
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
Zinc finger protein multitype 1, Friend of GATA protein 1, Friend of GATA-1, FOG-1
no
no
GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS
GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
Escherichia coli
sample
ZFPM1, FOG1, FOG
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
BL21 DE3
plasmid
pGEX-2T
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2004-09-21
1
1
2008-04-29
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2004-03-22
REL
REL
ZN
ZINC ION
Structure was determined using standard 2D homonuclear NMR spectroscopy
structures with the lowest energy
1000
20
2D NOESY
2D TOCSY
DQF-COSY
HNHA
0 mM
5.6
ambient
275
K
0 mM
5.6
ambient
275
K
final structures were based on 859 unambiguous NOE-derived distance constraints, 20 ambiguous constraints and 31 dihedral angle restraints
simulated annealing, molecular dynamics, torsion angle dynamics
1
lowest energy
0.27 mM FOG-F3, 2mM TCEP, 1 mM ZnSO4, 95% H2O, 5% D2O
95% H2O/5% D2O
0.245 mM 15N-FOG-F3, 2mM TCEP, 1 mM ZnSO4, 95% H2O, 5% D2O
95% H2O/5% D2O
Bruker
processing
XwinNMR
2.6
Bartels et al
data analysis
XEASY
1.3.13
Guntert et al
refinement
DYANA
1.5
Linge et al
structure solution
ARIA
1.2
600
Bruker
DRX
ZN
36
2
ZN
ZN
36
A
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
LYS
5
n
5
LYS
5
A
ARG
6
n
6
ARG
6
A
PRO
7
n
7
PRO
7
A
PHE
8
n
8
PHE
8
A
VAL
9
n
9
VAL
9
A
CYS
10
n
10
CYS
10
A
ARG
11
n
11
ARG
11
A
ILE
12
n
12
ILE
12
A
CYS
13
n
13
CYS
13
A
LEU
14
n
14
LEU
14
A
SER
15
n
15
SER
15
A
ALA
16
n
16
ALA
16
A
PHE
17
n
17
PHE
17
A
THR
18
n
18
THR
18
A
THR
19
n
19
THR
19
A
LYS
20
n
20
LYS
20
A
ALA
21
n
21
ALA
21
A
ASN
22
n
22
ASN
22
A
CYS
23
n
23
CYS
23
A
ALA
24
n
24
ALA
24
A
ARG
25
n
25
ARG
25
A
HIS
26
n
26
HIS
26
A
LEU
27
n
27
LEU
27
A
LYS
28
n
28
LYS
28
A
VAL
29
n
29
VAL
29
A
HIS
30
n
30
HIS
30
A
THR
31
n
31
THR
31
A
ASP
32
n
32
ASP
32
A
THR
33
n
33
THR
33
A
LEU
34
n
34
LEU
34
A
SER
35
n
35
SER
35
A
author_defined_assembly
1
monomeric
A
CYS
10
A
SG
CYS
10
1_555
A
ZN
36
B
ZN
ZN
1_555
A
CYS
13
A
SG
CYS
13
1_555
105.6
A
CYS
10
A
SG
CYS
10
1_555
A
ZN
36
B
ZN
ZN
1_555
A
HIS
26
A
NE2
HIS
26
1_555
107.9
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
36
B
ZN
ZN
1_555
A
HIS
26
A
NE2
HIS
26
1_555
112.7
A
CYS
10
A
SG
CYS
10
1_555
A
ZN
36
B
ZN
ZN
1_555
A
HIS
30
A
NE2
HIS
30
1_555
109.2
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
36
B
ZN
ZN
1_555
A
HIS
30
A
NE2
HIS
30
1_555
112.4
A
HIS
26
A
NE2
HIS
26
1_555
A
ZN
36
B
ZN
ZN
1_555
A
HIS
30
A
NE2
HIS
30
1_555
108.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
8
A
N
PHE
8
A
O
PHE
17
A
O
PHE
17
6
A
A
HZ1
OD2
LYS
ASP
28
32
1.55
1
A
SER
2
-174.81
-42.07
1
A
SER
3
-162.38
-152.93
1
A
PRO
7
-72.29
28.17
1
A
PHE
8
-94.29
53.18
1
A
CYS
13
-95.16
-128.52
1
A
LEU
14
-153.66
36.17
1
A
HIS
30
-77.74
42.20
1
A
THR
31
175.94
-45.18
2
A
LYS
5
-173.30
133.71
2
A
PRO
7
-60.10
4.30
2
A
CYS
13
-101.70
-123.38
2
A
LEU
14
-157.26
36.20
2
A
THR
31
-176.39
31.78
2
A
ASP
32
-179.29
130.61
3
A
LYS
5
-72.04
-145.85
3
A
ARG
6
-159.07
65.74
3
A
CYS
13
-96.24
-124.38
3
A
LEU
14
-159.96
37.46
3
A
HIS
30
-79.82
25.12
3
A
THR
31
-179.95
34.97
3
A
LEU
34
-79.67
43.62
4
A
SER
3
61.51
-139.93
4
A
CYS
13
-102.82
-122.53
4
A
LEU
14
-159.54
34.92
4
A
HIS
30
-78.26
43.10
4
A
THR
31
-177.93
-45.76
4
A
LEU
34
-161.08
-42.98
5
A
SER
3
73.24
134.29
5
A
PRO
7
-65.87
13.03
5
A
PHE
8
-85.02
48.31
5
A
CYS
13
-96.42
-124.89
5
A
LEU
14
-160.09
39.66
5
A
HIS
30
-77.16
47.56
5
A
THR
31
179.06
-39.86
5
A
LEU
34
-151.78
54.98
6
A
SER
3
71.81
139.71
6
A
CYS
13
-100.20
-121.87
6
A
LEU
14
-159.84
34.03
6
A
HIS
30
-77.74
34.30
6
A
THR
31
-162.28
-45.11
6
A
LEU
34
-144.09
44.93
7
A
SER
3
-174.35
136.35
7
A
ARG
6
-98.78
33.19
7
A
CYS
13
-104.52
-123.92
7
A
LEU
14
-160.02
39.48
7
A
THR
31
-176.09
32.29
7
A
ASP
32
-170.92
132.60
8
A
PRO
7
-71.42
24.83
8
A
PHE
8
-91.50
49.66
8
A
CYS
13
-99.15
-124.54
8
A
LEU
14
-159.13
36.09
8
A
THR
31
-87.21
42.64
8
A
ASP
32
-173.25
-98.75
8
A
LEU
34
-157.80
-43.31
9
A
SER
2
-166.22
50.50
9
A
PRO
7
-63.24
17.33
9
A
PHE
8
-86.01
49.50
9
A
CYS
13
-104.07
-121.97
9
A
LEU
14
-160.71
37.02
9
A
LEU
34
-79.00
46.77
10
A
PRO
7
-72.19
25.97
10
A
PHE
8
-91.37
49.30
10
A
CYS
13
-103.67
-122.90
10
A
LEU
14
-160.38
36.35
10
A
HIS
30
-79.65
25.17
10
A
THR
31
-173.75
35.01
10
A
ASP
32
-168.13
-50.05
10
A
THR
33
-90.24
50.49
11
A
SER
2
-177.56
-126.41
11
A
SER
3
68.11
127.91
11
A
ARG
6
-105.80
59.67
11
A
CYS
13
-99.23
-123.61
11
A
LEU
14
-157.64
35.26
11
A
HIS
30
-79.70
42.48
11
A
THR
31
-175.30
-47.65
11
A
ASP
32
-83.28
-145.89
11
A
LEU
34
-77.92
47.10
12
A
SER
2
-76.22
-134.60
12
A
ARG
6
-115.08
63.58
12
A
CYS
13
-99.33
-124.63
12
A
LEU
14
-158.10
36.48
12
A
THR
31
-85.92
40.34
12
A
ASP
32
-171.17
-69.02
12
A
THR
33
-84.07
39.20
12
A
LEU
34
-141.27
43.10
13
A
ARG
6
-102.76
42.89
13
A
CYS
13
-98.60
-124.85
13
A
LEU
14
-157.52
36.92
14
A
LYS
5
69.07
145.97
14
A
ARG
6
-104.60
51.79
14
A
CYS
13
-94.65
-123.92
14
A
LEU
14
-159.01
35.32
14
A
HIS
30
-78.90
44.79
14
A
THR
31
-173.92
-46.91
15
A
SER
3
65.58
129.04
15
A
LYS
5
66.98
172.36
15
A
CYS
13
-96.82
-125.27
15
A
LEU
14
-160.27
36.53
15
A
HIS
30
-78.60
37.00
15
A
THR
31
177.43
-45.08
15
A
LEU
34
-79.38
46.59
16
A
SER
2
-170.00
-135.66
16
A
PRO
7
-71.52
27.50
16
A
PHE
8
-94.97
44.28
16
A
CYS
13
-95.07
-125.13
16
A
LEU
14
-159.57
34.18
16
A
HIS
30
-78.44
40.83
16
A
THR
31
-178.10
-40.61
16
A
ASP
32
-72.43
-100.12
17
A
SER
2
-157.80
45.63
17
A
LYS
5
73.11
134.74
17
A
ARG
6
-109.76
68.74
17
A
CYS
13
-92.31
-123.92
17
A
LEU
14
-158.22
33.87
17
A
LEU
34
-87.22
38.76
18
A
LYS
5
-173.80
-171.05
18
A
PRO
7
-68.55
22.82
18
A
PHE
8
-91.30
50.96
18
A
CYS
13
-95.39
-124.14
18
A
LEU
14
-160.44
40.61
18
A
ASP
32
65.01
-51.24
18
A
LEU
34
-147.19
-41.75
19
A
SER
3
-159.67
-143.09
19
A
CYS
13
-100.78
-124.78
19
A
LEU
14
-155.05
37.38
19
A
HIS
30
-77.98
42.21
19
A
THR
31
179.55
-50.05
19
A
ASP
32
-91.86
32.23
19
A
THR
33
-161.13
36.65
19
A
LEU
34
-159.62
47.93
20
A
LYS
5
-170.34
145.29
20
A
PRO
7
-67.50
7.22
20
A
CYS
13
-99.88
-124.11
20
A
LEU
14
-157.39
37.94
20
A
HIS
30
-79.79
31.18
20
A
THR
31
-171.37
30.83
20
A
ASP
32
-172.10
-133.58
Solution structure of the third zinc finger domain of FOG-1
1
N
N
2
N
N
A
THR
19
A
THR
19
HELX_P
A
LYS
28
A
LYS
28
1
1
10
A
VAL
29
A
VAL
29
HELX_P
A
THR
31
A
THR
31
5
2
3
metalc
2.243
A
CYS
10
A
SG
CYS
10
1_555
A
ZN
36
B
ZN
ZN
1_555
metalc
2.309
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
36
B
ZN
ZN
1_555
metalc
1.950
A
HIS
26
A
NE2
HIS
26
1_555
A
ZN
36
B
ZN
ZN
1_555
metalc
1.953
A
HIS
30
A
NE2
HIS
30
1_555
A
ZN
36
B
ZN
ZN
1_555
TRANSCRIPTION
classical zinc finger, TRANSCRIPTION
FOG1_MOUSE
UNP
1
328
O35615
SGERPFVCLICLSAFTTKANCERHLKVHTDTLS
328
360
1SRK
3
35
O35615
A
1
3
35
1
expression tag
GLY
1
1SRK
A
O35615
UNP
1
1
expression tag
SER
2
1SRK
A
O35615
UNP
2
1
GLU
engineered mutation
LYS
5
1SRK
A
O35615
UNP
330
5
1
LEU
engineered mutation
ARG
11
1SRK
A
O35615
UNP
336
11
1
GLU
engineered mutation
ALA
24
1SRK
A
O35615
UNP
349
24
2
anti-parallel
A
PHE
8
A
PHE
8
A
VAL
9
A
VAL
9
A
ALA
16
A
ALA
16
A
PHE
17
A
PHE
17
BINDING SITE FOR RESIDUE ZN A 36
A
ZN
36
Software
4
A
CYS
10
A
CYS
10
4
1_555
A
CYS
13
A
CYS
13
4
1_555
A
HIS
26
A
HIS
26
4
1_555
A
HIS
30
A
HIS
30
4
1_555