0.026874 0.000000 0.000000 0.000000 0.021547 0.000000 0.000000 0.000000 0.019212 0.00000 0.00000 0.00000 Gonzalez, L. Plecs, J. Alber, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 90.00 37.210 46.410 52.050 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H6 78.112 BENZENE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H Y 74 N C Y 75 N C Y 76 N C Y 77 N C Y 78 N C Y 79 N C N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N N N 87 S C N 88 N C N 89 N O N 90 N C N 91 N C N 92 N C N 93 N O N 94 N N N 95 N O N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N N N 107 S C N 108 N C N 109 N O N 110 N C N 111 N C N 112 N C N 113 N O N 114 N O N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N N N 126 N C N 127 N C N 128 N O N 129 N O N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N N N 136 S C N 137 N C N 138 N O N 139 N C Y 140 N C Y 141 N N Y 142 N C Y 143 N C Y 144 N N N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N O N 157 N H N 158 N H N 159 N N N 160 S C N 161 N C N 162 N O N 163 N C N 164 N C N 165 N C N 166 N C N 167 N O N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 N C N 186 N C N 187 N C N 188 N C N 189 N N N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N S N 213 N C N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N O N 232 N O N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C Y 245 N C Y 246 N C Y 247 N C Y 248 N C Y 249 N C Y 250 N C N 251 N O N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C N 269 N C N 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing Y 70 N doub Y 71 N sing N 72 N sing Y 73 N sing N 74 N sing Y 75 N doub N 76 N sing Y 77 N sing N 78 N sing Y 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing Y 139 N sing Y 140 N doub Y 141 N doub N 142 N sing Y 143 N sing N 144 N sing Y 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing Y 239 N doub Y 240 N sing Y 241 N sing N 242 N sing Y 243 N doub N 244 N sing Y 245 N doub N 246 N sing Y 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing US Nat.Struct.Biol. NSBIEW 2024 1072-8368 3 510 515 10.1038/nsb0696-510 8646536 An engineered allosteric switch in leucine-zipper oligomerization. 1996 UK Nature NATUAS 0006 0028-0836 371 80 Crystal Structure of an Isoleucine-Zipper Trimer 1994 US Science SCIEAS 0038 0036-8075 262 1401 A Switch between Two-, Three-, and Four-Stranded Coiled Coils in GCN4 Leucine Zipper Mutants 1993 US Science SCIEAS 0038 0036-8075 254 539 X-Ray Structure of the GCN4 Leucine Zipper 1991 10.2210/pdb1swi/pdb pdb_00001swi 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 IMAGE PLATE 1994-08 RIGAKU M x-ray 1 1.5418 1.0 1.5418 3962.639 GCN4P1 N16A 3 man polymer 78.112 BENZENE 1 syn non-polymer 18.015 water 29 nat water no no RMKQLEDKVEELLSKAYHLENEVARLKKLVGER RMKQLEDKVEELLSKAYHLENEVARLKKLVGER A,B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces sample 4932 Saccharomyces cerevisiae 1.88 34. pdbx_database_status software computing database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Other Refinement description Data collection Database references Derived calculations Data collection 1 0 1996-11-08 1 1 2008-03-24 1 2 2011-07-13 1 3 2019-07-17 1 4 2019-08-14 1 5 2021-11-03 1 6 2024-02-14 _pdbx_database_status.process_site _software.classification _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1996-05-09 REL BNZ BENZENE HOH water BNZ 100 2 BNZ BNZ 100 B HOH 50 3 HOH HOH 50 A HOH 54 3 HOH HOH 54 A HOH 56 3 HOH HOH 56 A HOH 58 3 HOH HOH 58 A HOH 59 3 HOH HOH 59 A HOH 63 3 HOH HOH 63 A HOH 65 3 HOH HOH 65 A HOH 66 3 HOH HOH 66 A HOH 69 3 HOH HOH 69 A HOH 74 3 HOH HOH 74 A HOH 75 3 HOH HOH 75 A HOH 78 3 HOH HOH 78 A HOH 51 3 HOH HOH 51 B HOH 62 3 HOH HOH 62 B HOH 64 3 HOH HOH 64 B HOH 68 3 HOH HOH 68 B HOH 72 3 HOH HOH 72 B HOH 73 3 HOH HOH 73 B HOH 76 3 HOH HOH 76 B HOH 77 3 HOH HOH 77 B HOH 52 3 HOH HOH 52 C HOH 53 3 HOH HOH 53 C HOH 55 3 HOH HOH 55 C HOH 57 3 HOH HOH 57 C HOH 60 3 HOH HOH 60 C HOH 61 3 HOH HOH 61 C HOH 67 3 HOH HOH 67 C HOH 70 3 HOH HOH 70 C HOH 71 3 HOH HOH 71 C ARG 1 n 1 ARG 1 A MET 2 n 2 MET 2 A LYS 3 n 3 LYS 3 A GLN 4 n 4 GLN 4 A LEU 5 n 5 LEU 5 A GLU 6 n 6 GLU 6 A ASP 7 n 7 ASP 7 A LYS 8 n 8 LYS 8 A VAL 9 n 9 VAL 9 A GLU 10 n 10 GLU 10 A GLU 11 n 11 GLU 11 A LEU 12 n 12 LEU 12 A LEU 13 n 13 LEU 13 A SER 14 n 14 SER 14 A LYS 15 n 15 LYS 15 A ALA 16 n 16 ALA 16 A TYR 17 n 17 TYR 17 A HIS 18 n 18 HIS 18 A LEU 19 n 19 LEU 19 A GLU 20 n 20 GLU 20 A ASN 21 n 21 ASN 21 A GLU 22 n 22 GLU 22 A VAL 23 n 23 VAL 23 A ALA 24 n 24 ALA 24 A ARG 25 n 25 ARG 25 A LEU 26 n 26 LEU 26 A LYS 27 n 27 LYS 27 A LYS 28 n 28 LYS 28 A LEU 29 n 29 LEU 29 A VAL 30 n 30 VAL 30 A GLY 31 n 31 GLY 31 A n 32 32 A n 33 33 A ARG 1 n 1 ARG 1 B MET 2 n 2 MET 2 B LYS 3 n 3 LYS 3 B GLN 4 n 4 GLN 4 B LEU 5 n 5 LEU 5 B GLU 6 n 6 GLU 6 B ASP 7 n 7 ASP 7 B LYS 8 n 8 LYS 8 B VAL 9 n 9 VAL 9 B GLU 10 n 10 GLU 10 B GLU 11 n 11 GLU 11 B LEU 12 n 12 LEU 12 B LEU 13 n 13 LEU 13 B SER 14 n 14 SER 14 B LYS 15 n 15 LYS 15 B ALA 16 n 16 ALA 16 B TYR 17 n 17 TYR 17 B HIS 18 n 18 HIS 18 B LEU 19 n 19 LEU 19 B GLU 20 n 20 GLU 20 B ASN 21 n 21 ASN 21 B GLU 22 n 22 GLU 22 B VAL 23 n 23 VAL 23 B ALA 24 n 24 ALA 24 B ARG 25 n 25 ARG 25 B LEU 26 n 26 LEU 26 B LYS 27 n 27 LYS 27 B LYS 28 n 28 LYS 28 B LEU 29 n 29 LEU 29 B VAL 30 n 30 VAL 30 B n 31 31 B n 32 32 B n 33 33 B ARG 1 n 1 ARG 1 C MET 2 n 2 MET 2 C LYS 3 n 3 LYS 3 C GLN 4 n 4 GLN 4 C LEU 5 n 5 LEU 5 C GLU 6 n 6 GLU 6 C ASP 7 n 7 ASP 7 C LYS 8 n 8 LYS 8 C VAL 9 n 9 VAL 9 C GLU 10 n 10 GLU 10 C GLU 11 n 11 GLU 11 C LEU 12 n 12 LEU 12 C LEU 13 n 13 LEU 13 C SER 14 n 14 SER 14 C LYS 15 n 15 LYS 15 C ALA 16 n 16 ALA 16 C TYR 17 n 17 TYR 17 C HIS 18 n 18 HIS 18 C LEU 19 n 19 LEU 19 C GLU 20 n 20 GLU 20 C ASN 21 n 21 ASN 21 C GLU 22 n 22 GLU 22 C VAL 23 n 23 VAL 23 C ALA 24 n 24 ALA 24 C ARG 25 n 25 ARG 25 C LEU 26 n 26 LEU 26 C LYS 27 n 27 LYS 27 C LYS 28 n 28 LYS 28 C LEU 29 n 29 LEU 29 C VAL 30 n 30 VAL 30 C n 31 31 C n 32 32 C n 33 33 C author_and_software_defined_assembly PISA 3 trimeric 3820 -34 6330 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 C CG ARG 1 C CG ARG 1 1 Y 1 C CD ARG 1 C CD ARG 1 1 Y 1 C NE ARG 1 C NE ARG 1 1 Y 1 C CZ ARG 1 C CZ ARG 1 1 Y 1 C NH1 ARG 1 C NH1 ARG 1 1 Y 1 C NH2 ARG 1 C NH2 ARG 1 1 Y 1 A GLU 32 A GLU 32 1 Y 1 A ARG 33 A ARG 33 1 Y 1 B GLY 31 B GLY 31 1 Y 1 B GLU 32 B GLU 32 1 Y 1 B ARG 33 B ARG 33 1 Y 1 C GLY 31 C GLY 31 1 Y 1 C GLU 32 C GLU 32 1 Y 1 C ARG 33 C ARG 33 1 Y 1 A CA MET 2 PLANAR 1 5.01 0.50 120.30 125.31 A A A NE CZ NH1 ARG ARG ARG 1 1 1 N 1 -3.44 0.50 120.30 116.86 A A A NE CZ NH2 ARG ARG ARG 1 1 1 N 1 12.43 1.80 110.60 123.03 A A A N CA CB MET MET MET 2 2 2 N 1 8.68 0.90 118.30 126.98 A A A CB CG OD1 ASP ASP ASP 7 7 7 N 1 -6.76 0.90 118.30 111.54 A A A CB CG OD2 ASP ASP ASP 7 7 7 N 1 3.67 0.50 120.30 123.97 B B B NE CZ NH1 ARG ARG ARG 1 1 1 N 1 6.53 0.90 118.30 124.83 B B B CB CG OD1 ASP ASP ASP 7 7 7 N 1 -6.57 0.90 118.30 111.73 B B B CB CG OD2 ASP ASP ASP 7 7 7 N 1 6.15 0.50 120.30 126.45 B B B NE CZ NH1 ARG ARG ARG 25 25 25 N 1 -3.33 0.50 120.30 116.97 B B B NE CZ NH2 ARG ARG ARG 25 25 25 N 1 A A CD OE1 GLU GLU 11 11 0.067 0.011 1.252 1.319 N 1 A A CD OE2 GLU GLU 20 20 0.099 0.011 1.252 1.351 N 1 B B CD OE2 GLU GLU 11 11 0.073 0.011 1.252 1.325 N 1 B B CD OE1 GLU GLU 20 20 0.068 0.011 1.252 1.320 N 1 C C CD OE2 GLU GLU 10 10 0.066 0.011 1.252 1.318 N 1 C C CD OE2 GLU GLU 20 20 0.101 0.011 1.252 1.353 N 1 A HIS 18 -29.56 -70.57 1 A VAL 30 -152.61 4.44 1 B ASN 21 -53.37 -70.26 1 B GLU 22 -21.31 -45.54 1 B LEU 29 -70.27 24.97 1 C VAL 9 -47.52 -18.13 1 C GLU 22 -131.94 -41.05 1 C LEU 26 -31.86 -72.61 44. ELECTRON DENSITY FOR THE N-TERMINAL HEPTAD (RESIDUES 1 - 7) IS COMPARATIVELY WEAK, AND THE MAIN CHAIN B VALUES ARE ABOVE AVERAGE. THE N-TERMINAL HEPTAD MAKES RELATIVELY FEW CRYSTAL CONTACTS AND MAY BE DYNAMICALLY DISORDERED. 0.1870000 0.1870000 2.6 6.0 2367 1 2. 2.6 6.0 29 789 6 0 754 0.019 3.15 1SWI 2618 2. 0.0970000 1 2.3 86. refinement X-PLOR refinement TNT model building X-PLOR data reduction R-AXIS phasing X-PLOR GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A COMPLEXED WITH BENZENE 1 N N 1 N N 1 N N 2 N N 3 N N 3 N N 3 N N A ARG 1 A ARG 1 HELX_P A VAL 30 A VAL 30 1 A1 30 B ARG 1 B ARG 1 HELX_P B VAL 30 B VAL 30 1 B1 30 C ARG 1 C ARG 1 HELX_P C VAL 30 C VAL 30 1 C1 30 LEUCINE ZIPPER COILED COIL, LEUCINE ZIPPER GCN4_YEAST UNP 1 249 P03069 249 281 1SWI 1 33 P03069 A 1 1 33 249 281 1SWI 1 33 P03069 B 1 1 33 249 281 1SWI 1 33 P03069 C 1 1 33 1 ASN engineered mutation ALA 16 1SWI A P03069 UNP 264 16 2 ASN engineered mutation ALA 16 1SWI B P03069 UNP 264 16 3 ASN engineered mutation ALA 16 1SWI C P03069 UNP 264 16 BINDING SITE FOR RESIDUE BNZ B 100 B BNZ 100 Software 4 A LEU 12 A LEU 12 4 1_555 B ALA 16 B ALA 16 4 1_555 C LEU 12 C LEU 12 4 1_555 C ALA 16 C ALA 16 4 1_555 19 P 21 21 21