HEADER RIBOSOME 16-APR-04 1T1O TITLE COMPONENTS OF THE CONTROL 70S RIBOSOME TO PROVIDE REFERENCE FOR THE TITLE 2 RRF BINDING SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DODECAMER FRAGMENT OF DOUBLE HELIX FROM 23S RRNA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: APICAL LOOP OF HELIX 43; COMPND 5 OTHER_DETAILS: FITTED INTO THE CRYO-EM MAP OF THE 70S RIBOSOME; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 19-MER FRAGMENT OF THE 23S RRNA; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: HELIX 69; COMPND 10 OTHER_DETAILS: FITTED INTO THE CRYO-EM MAP OF THE 70S RIBOSOME; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 42-MER FRAGMENT OF DOUBLE HELIX FROM 16S RRNA; COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: TOP PORTION OF HELIX 44; COMPND 15 SYNONYM: RIBOSOME RELEASING FACTOR; RRF; COMPND 16 OTHER_DETAILS: FITTED INTO THE CRYO-EM MAP OF THE 70S RIBOSOME SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: MRE600; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 STRAIN: MRE600; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 STRAIN: MRE600 KEYWDS RRF BINDING POSITION ON THE RIBOSOME, RIBOSOME EXPDTA ELECTRON MICROSCOPY MDLTYP P ATOMS ONLY, CHAIN A, B, C AUTHOR R.K.AGRAWAL,M.R.SHARMA,M.C.KIEL,G.HIROKAWA,T.M.BOOTH,C.M.SPAHN, AUTHOR 2 R.A.GRASSUCCI,A.KAJI,J.FRANK REVDAT 3 14-FEB-24 1T1O 1 REMARK REVDAT 2 24-FEB-09 1T1O 1 VERSN REVDAT 1 15-JUN-04 1T1O 0 JRNL AUTH R.K.AGRAWAL,M.R.SHARMA,M.C.KIEL,G.HIROKAWA,T.M.BOOTH, JRNL AUTH 2 C.M.SPAHN,R.A.GRASSUCCI,A.KAJI,J.FRANK JRNL TITL VISUALIZATION OF RIBOSOME-RECYCLING FACTOR ON THE JRNL TITL 2 ESCHERICHIA COLI 70S RIBOSOME: FUNCTIONAL IMPLICATIONS JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 8900 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15178758 JRNL DOI 10.1073/PNAS.0401904101 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.HARMS,F.SCHLUENZEN,R.ZARIVACH,A.BASHAN,S.GAT,I.AGMON, REMARK 1 AUTH 2 H.BARTELS,F.FRANCESCHI,A.YONATH REMARK 1 TITL HIGH RESOLUTION STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT REMARK 1 TITL 2 FROM A MESOPHILIC EUBACTERIUM REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 107 679 2001 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 11733066 REMARK 1 DOI 10.1016/S0092-8674(01)00546-3 REMARK 1 REFERENCE 2 REMARK 1 AUTH B.T.WIMBERLY,D.E.BRODERSEN,W.M.CLEMONS JR., REMARK 1 AUTH 2 R.J.MORGAN-WARREN,A.P.CARTER,C.VONRHEIN,T.HARTSCH, REMARK 1 AUTH 3 V.RAMAKRISHNAN REMARK 1 TITL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT REMARK 1 REF NATURE V. 407 327 2000 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 11014182 REMARK 1 DOI 10.1038/35030006 REMARK 2 REMARK 2 RESOLUTION. 12.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1KC9 REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--CROSS CORELATION COEFFICIENT BASED REMARK 3 MANUAL FITTING IN O REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 12.00 REMARK 3 NUMBER OF PARTICLES : 51217 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: TMV REMARK 3 REMARK 3 OTHER DETAILS: SPIDER PACKAGE REMARK 4 REMARK 4 1T1O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022199. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : 70S-RRF COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 32.00 REMARK 245 SAMPLE SUPPORT DETAILS : QUANTIFOIL HOLLEY-CARBON FILM REMARK 245 GRIDS REMARK 245 SAMPLE VITRIFICATION DETAILS : RAPID-FREEZING IN LIQUID ETHANE REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-JUN-02 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 93.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 1400.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 50000 REMARK 245 CALIBRATED MAGNIFICATION : 49696 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KC9 RELATED DB: PDB REMARK 900 X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE 50S RIBOSOMAL SUBUNIT FROM REMARK 900 D. RADIODURANS REMARK 900 RELATED ID: 1FJF RELATED DB: PDB REMARK 900 X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM REMARK 900 T. THERMOPHILU REMARK 900 RELATED ID: 1T1M RELATED DB: PDB REMARK 900 RELATED ID: EMD-1077 RELATED DB: EMDB DBREF 1T1O A 1061 1072 PDB 1T1O 1T1O 1061 1072 DBREF 1T1O B 1906 1924 PDB 1T1O 1T1O 1906 1924 DBREF 1T1O C 1401 1501 PDB 1T1O 1T1O 1401 1501 SEQRES 1 A 12 U G G C U U A G A A G C SEQRES 1 B 19 G G C C G U A A C U A U A SEQRES 2 B 19 A C G G U C SEQRES 1 C 42 G C C C G U C A C A C C A SEQRES 2 C 42 U G G G A G U A U G A C U SEQRES 3 C 42 G G G G U G A A G U C G U SEQRES 4 C 42 A A C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ATOM 1 P U A1061 -50.967 4.476 -88.756 1.00 88.72 P ATOM 2 P G A1062 -50.803 8.850 -87.398 1.00 92.48 P ATOM 3 P G A1063 -48.764 10.454 -81.417 1.00 90.30 P ATOM 4 P C A1064 -46.814 8.130 -76.400 1.00 60.38 P ATOM 5 P U A1065 -44.768 10.730 -72.531 1.00100.31 P ATOM 6 P U A1066 -42.193 15.381 -70.125 1.00132.67 P ATOM 7 P A A1067 -39.915 20.643 -71.603 1.00134.62 P ATOM 8 P G A1068 -40.942 19.987 -77.367 1.00138.55 P ATOM 9 P A A1069 -40.506 16.590 -81.730 1.00132.45 P ATOM 10 P A A1070 -38.713 10.950 -83.507 1.00162.07 P ATOM 11 P G A1071 -36.893 9.953 -90.206 1.00112.73 P ATOM 12 P C A1072 -32.645 9.139 -86.060 1.00149.00 P TER 13 C A1072 ATOM 14 P G B1906 -22.148 -0.316 5.233 1.00 67.41 P ATOM 15 P G B1907 -22.343 -3.897 -0.839 1.00 72.07 P ATOM 16 P C B1908 -24.417 -5.293 -4.807 1.00 89.20 P ATOM 17 P C B1909 -29.004 -5.381 -8.824 1.00103.74 P ATOM 18 P G B1910 -34.694 -3.868 -9.953 1.00105.00 P ATOM 19 P U B1911 -38.362 -0.822 -11.879 1.00161.61 P ATOM 20 P A B1912 -37.723 4.926 -11.499 1.00 97.28 P ATOM 21 P A B1913 -38.794 10.317 -14.640 1.00117.57 P ATOM 22 P C B1914 -36.866 14.500 -10.805 1.00162.00 P ATOM 23 P U B1915 -34.150 11.475 -14.990 1.00 27.21 P ATOM 24 P A B1916 -29.304 8.162 -14.731 1.00 95.30 P ATOM 25 P U B1917 -28.103 6.064 -9.146 1.00 84.23 P ATOM 26 P A B1918 -29.985 4.223 -3.096 1.00162.07 P ATOM 27 P A B1919 -35.113 5.058 0.796 1.00 84.83 P ATOM 28 P C B1920 -38.688 6.012 4.499 1.00113.68 P ATOM 29 P G B1921 -40.025 -0.476 6.468 1.00107.14 P ATOM 30 P G B1922 -39.847 -6.201 6.409 1.00100.36 P ATOM 31 P U B1923 -39.899 -12.137 7.084 1.00135.00 P ATOM 32 P C B1924 -34.477 -14.677 5.302 1.00129.47 P TER 33 C B1924 ATOM 34 P G C1401 -58.833 16.167 3.186 1.00 51.68 P ATOM 35 P C C1402 -56.316 20.287 5.445 1.00 43.91 P ATOM 36 P C C1403 -50.864 21.848 7.254 1.00 63.28 P ATOM 37 P C C1404 -44.960 20.357 6.848 1.00 53.55 P ATOM 38 P G C1405 -39.685 19.225 5.114 1.00 59.94 P ATOM 39 P U C1406 -35.747 18.043 0.614 1.00 73.43 P ATOM 40 P C C1407 -32.819 16.884 -4.002 1.00 76.27 P ATOM 41 P A C1408 -33.387 18.644 -9.954 1.00 81.58 P ATOM 42 P C C1409 -35.356 22.862 -13.317 1.00 86.68 P ATOM 43 P A C1410 -36.463 28.221 -14.058 1.00 95.83 P ATOM 44 P C C1411 -35.649 33.439 -12.106 1.00163.78 P ATOM 45 P C C1412 -33.015 37.408 -8.297 1.00170.59 P ATOM 46 P A C1413 -29.407 39.325 -4.185 1.00107.44 P ATOM 47 P U C1414 -24.617 38.585 -0.316 1.00 85.87 P ATOM 48 P G C1415 -20.262 34.924 2.122 1.00 84.46 P ATOM 49 P G C1416 -16.170 31.637 2.899 1.00 85.98 P ATOM 50 P G C1417 -11.590 29.073 1.100 1.00124.72 P ATOM 51 P A C1418 -8.282 29.578 -4.086 1.00150.89 P ATOM 52 P G C1419 -3.657 29.502 -7.228 1.00182.21 P ATOM 53 P U C1420 -1.684 34.313 -10.649 1.00149.75 P ATOM 54 P A C1480 -14.928 43.207 -0.977 1.00134.12 P ATOM 55 P U C1481 -16.692 42.626 -6.504 1.00133.09 P ATOM 56 P G C1482 -17.539 39.084 -11.064 1.00126.17 P ATOM 57 P A C1483 -17.497 33.080 -12.431 1.00131.52 P ATOM 58 P C C1484 -18.247 27.992 -14.750 1.00124.28 P ATOM 59 P U C1485 -19.195 23.011 -11.445 1.00116.70 P ATOM 60 P G C1486 -21.920 21.033 -6.193 1.00108.72 P ATOM 61 P G C1487 -25.827 20.297 -2.231 1.00119.99 P ATOM 62 P G C1488 -30.602 22.542 1.944 1.00 73.32 P ATOM 63 P G C1489 -34.380 26.081 4.120 1.00 89.26 P ATOM 64 P U C1490 -39.079 29.637 4.421 1.00139.41 P ATOM 65 P G C1491 -43.409 31.805 1.491 1.00184.39 P ATOM 66 P A C1492 -47.355 31.636 -2.413 1.00160.38 P ATOM 67 P A C1493 -49.581 25.708 -5.275 1.00200.93 P ATOM 68 P G C1494 -50.203 21.115 -7.723 1.00118.15 P ATOM 69 P U C1495 -48.714 16.146 -10.216 1.00 79.93 P ATOM 70 P C C1496 -46.807 11.263 -9.715 1.00 76.77 P ATOM 71 P G C1497 -46.413 6.875 -6.579 1.00 65.71 P ATOM 72 P U C1498 -46.959 4.896 -0.196 1.00 53.61 P ATOM 73 P A C1499 -45.628 6.302 6.205 1.00 39.64 P ATOM 74 P A C1500 -44.985 7.431 10.843 1.00 36.81 P ATOM 75 P C C1501 -46.849 9.887 15.309 1.00 28.55 P TER 76 C C1501 MASTER 123 0 0 0 0 0 0 6 73 3 0 7 END