0.008996
0.005194
0.000000
0.000000
0.010387
0.000000
0.000000
0.000000
0.006988
0.00000
0.00000
0.00000
Reverter, D.
Lima, C.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
111.163
111.163
143.106
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
12
1519
1531
10.1016/j.str.2004.05.023
15296745
A basis for SUMO protease specificity provided by analysis of human Senp2 and a
Senp2-SUMO complex
2004
100
1
CCD
2004-01-15
MARRESEARCH
diamond
SINGLE WAVELENGTH
M
x-ray
1
0.9790
1.0
31-ID
APS
0.9790
SYNCHROTRON
APS BEAMLINE 31-ID
CHEMICALLY MODIFIED TO PROMOTE BOND BETWEEN CYS548 AND SUMO-1 GLY97
26787.084
Sentrin-specific protease 2
3.4.22.-
catalytic domain
1
man
polymer
9285.527
Ubiquitin-like protein SMT3C
1
man
polymer
96.063
SULFATE ION
5
syn
non-polymer
18.015
water
81
nat
water
Sentrin/SUMO-specific protease SENP2; SMT3-specific isopeptidase 2; Smt3ip2; Axam2
Ubiquitin-homology domain protein PIC1; Ubiquitin-like protein UBL1;
Ubiquitin-related protein SUMO-1; GAP modifying protein 1; GMP1; Sentrin
E.C.3.4.22.-
no
no
DLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFY
PKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSD
LNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL
DLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFY
PKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSD
LNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL
A
polypeptide(L)
no
no
EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG
EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
SENP2, KIAA1331
9606
Homo sapiens
562
Escherichia coli
BL21 CP RIL
PLASMID
T7 BASED
human
Homo
Escherichia
sample
UBL1, SMT3H3, SMT3C
9606
Homo sapiens
562
Escherichia coli
BL21 CP RIL
PLASMID
T7 BASED
1
3.5
64.5
VAPOR DIFFUSION, HANGING DROP
6.5
2M AMMONIUM SULFATE, 5% PEG 400, 0.1M BIS-TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
repository
Initial release
Version format compliance
Version format compliance
1
0
2004-09-14
1
1
2008-04-30
1
2
2011-07-13
RCSB
Y
RCSB
2004-05-31
REL
REL
SO4
SULFATE ION
HOH
water
SO4
300
3
SO4
SO4
300
A
SO4
301
3
SO4
SO4
301
A
SO4
302
3
SO4
SO4
302
A
SO4
303
3
SO4
SO4
303
A
SO4
304
3
SO4
SO4
304
B
HOH
1
4
HOH
HOH
1
A
HOH
2
4
HOH
HOH
2
A
HOH
3
4
HOH
HOH
3
A
HOH
4
4
HOH
HOH
4
A
HOH
5
4
HOH
HOH
5
A
HOH
6
4
HOH
HOH
6
A
HOH
7
4
HOH
HOH
7
A
HOH
9
4
HOH
HOH
9
A
HOH
10
4
HOH
HOH
10
A
HOH
11
4
HOH
HOH
11
A
HOH
12
4
HOH
HOH
12
A
HOH
14
4
HOH
HOH
14
A
HOH
15
4
HOH
HOH
15
A
HOH
16
4
HOH
HOH
16
A
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
21
4
HOH
HOH
21
A
HOH
22
4
HOH
HOH
22
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
26
4
HOH
HOH
26
A
HOH
27
4
HOH
HOH
27
A
HOH
29
4
HOH
HOH
29
A
HOH
30
4
HOH
HOH
30
A
HOH
31
4
HOH
HOH
31
A
HOH
32
4
HOH
HOH
32
A
HOH
33
4
HOH
HOH
33
A
HOH
34
4
HOH
HOH
34
A
HOH
35
4
HOH
HOH
35
A
HOH
36
4
HOH
HOH
36
A
HOH
37
4
HOH
HOH
37
A
HOH
38
4
HOH
HOH
38
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
47
4
HOH
HOH
47
A
HOH
48
4
HOH
HOH
48
A
HOH
49
4
HOH
HOH
49
A
HOH
50
4
HOH
HOH
50
A
HOH
51
4
HOH
HOH
51
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
53
A
HOH
55
4
HOH
HOH
55
A
HOH
56
4
HOH
HOH
56
A
HOH
57
4
HOH
HOH
57
A
HOH
59
4
HOH
HOH
59
A
HOH
60
4
HOH
HOH
60
A
HOH
61
4
HOH
HOH
61
A
HOH
62
4
HOH
HOH
62
A
HOH
63
4
HOH
HOH
63
A
HOH
64
4
HOH
HOH
64
A
HOH
65
4
HOH
HOH
65
A
HOH
66
4
HOH
HOH
66
A
HOH
67
4
HOH
HOH
67
A
HOH
68
4
HOH
HOH
68
A
HOH
69
4
HOH
HOH
69
A
HOH
70
4
HOH
HOH
70
A
HOH
71
4
HOH
HOH
71
A
HOH
73
4
HOH
HOH
73
A
HOH
74
4
HOH
HOH
74
A
HOH
75
4
HOH
HOH
75
A
HOH
76
4
HOH
HOH
76
A
HOH
77
4
HOH
HOH
77
A
HOH
79
4
HOH
HOH
79
A
HOH
80
4
HOH
HOH
80
A
HOH
81
4
HOH
HOH
81
A
HOH
8
4
HOH
HOH
305
B
HOH
13
4
HOH
HOH
306
B
HOH
28
4
HOH
HOH
307
B
HOH
41
4
HOH
HOH
308
B
HOH
42
4
HOH
HOH
309
B
HOH
43
4
HOH
HOH
310
B
HOH
54
4
HOH
HOH
311
B
HOH
58
4
HOH
HOH
312
B
HOH
72
4
HOH
HOH
313
B
HOH
78
4
HOH
HOH
314
B
n
1
364
A
n
2
365
A
LEU
366
n
3
LEU
366
A
GLU
367
n
4
GLU
367
A
LEU
368
n
5
LEU
368
A
THR
369
n
6
THR
369
A
GLU
370
n
7
GLU
370
A
ASP
371
n
8
ASP
371
A
MET
372
n
9
MET
372
A
GLU
373
n
10
GLU
373
A
LYS
374
n
11
LYS
374
A
GLU
375
n
12
GLU
375
A
ILE
376
n
13
ILE
376
A
SER
377
n
14
SER
377
A
ASN
378
n
15
ASN
378
A
ALA
379
n
16
ALA
379
A
LEU
380
n
17
LEU
380
A
GLY
381
n
18
GLY
381
A
HIS
382
n
19
HIS
382
A
GLY
383
n
20
GLY
383
A
PRO
384
n
21
PRO
384
A
GLN
385
n
22
GLN
385
A
ASP
386
n
23
ASP
386
A
GLU
387
n
24
GLU
387
A
ILE
388
n
25
ILE
388
A
LEU
389
n
26
LEU
389
A
SER
390
n
27
SER
390
A
SER
391
n
28
SER
391
A
ALA
392
n
29
ALA
392
A
PHE
393
n
30
PHE
393
A
LYS
394
n
31
LYS
394
A
LEU
395
n
32
LEU
395
A
ARG
396
n
33
ARG
396
A
ILE
397
n
34
ILE
397
A
THR
398
n
35
THR
398
A
ARG
399
n
36
ARG
399
A
GLY
400
n
37
GLY
400
A
ASP
401
n
38
ASP
401
A
ILE
402
n
39
ILE
402
A
GLN
403
n
40
GLN
403
A
THR
404
n
41
THR
404
A
LEU
405
n
42
LEU
405
A
LYS
406
n
43
LYS
406
A
ASN
407
n
44
ASN
407
A
TYR
408
n
45
TYR
408
A
HIS
409
n
46
HIS
409
A
TRP
410
n
47
TRP
410
A
LEU
411
n
48
LEU
411
A
ASN
412
n
49
ASN
412
A
ASP
413
n
50
ASP
413
A
GLU
414
n
51
GLU
414
A
VAL
415
n
52
VAL
415
A
ILE
416
n
53
ILE
416
A
ASN
417
n
54
ASN
417
A
PHE
418
n
55
PHE
418
A
TYR
419
n
56
TYR
419
A
MET
420
n
57
MET
420
A
ASN
421
n
58
ASN
421
A
LEU
422
n
59
LEU
422
A
LEU
423
n
60
LEU
423
A
VAL
424
n
61
VAL
424
A
GLU
425
n
62
GLU
425
A
ARG
426
n
63
ARG
426
A
ASN
427
n
64
ASN
427
A
LYS
428
n
65
LYS
428
A
LYS
429
n
66
LYS
429
A
GLN
430
n
67
GLN
430
A
GLY
431
n
68
GLY
431
A
TYR
432
n
69
TYR
432
A
PRO
433
n
70
PRO
433
A
ALA
434
n
71
ALA
434
A
LEU
435
n
72
LEU
435
A
HIS
436
n
73
HIS
436
A
VAL
437
n
74
VAL
437
A
PHE
438
n
75
PHE
438
A
SER
439
n
76
SER
439
A
THR
440
n
77
THR
440
A
PHE
441
n
78
PHE
441
A
PHE
442
n
79
PHE
442
A
TYR
443
n
80
TYR
443
A
PRO
444
n
81
PRO
444
A
LYS
445
n
82
LYS
445
A
LEU
446
n
83
LEU
446
A
LYS
447
n
84
LYS
447
A
SER
448
n
85
SER
448
A
GLY
449
n
86
GLY
449
A
GLY
450
n
87
GLY
450
A
TYR
451
n
88
TYR
451
A
GLN
452
n
89
GLN
452
A
ALA
453
n
90
ALA
453
A
VAL
454
n
91
VAL
454
A
LYS
455
n
92
LYS
455
A
ARG
456
n
93
ARG
456
A
TRP
457
n
94
TRP
457
A
THR
458
n
95
THR
458
A
LYS
459
n
96
LYS
459
A
GLY
460
n
97
GLY
460
A
VAL
461
n
98
VAL
461
A
ASN
462
n
99
ASN
462
A
LEU
463
n
100
LEU
463
A
PHE
464
n
101
PHE
464
A
GLU
465
n
102
GLU
465
A
GLN
466
n
103
GLN
466
A
GLU
467
n
104
GLU
467
A
ILE
468
n
105
ILE
468
A
ILE
469
n
106
ILE
469
A
LEU
470
n
107
LEU
470
A
VAL
471
n
108
VAL
471
A
PRO
472
n
109
PRO
472
A
ILE
473
n
110
ILE
473
A
HIS
474
n
111
HIS
474
A
ARG
475
n
112
ARG
475
A
LYS
476
n
113
LYS
476
A
VAL
477
n
114
VAL
477
A
HIS
478
n
115
HIS
478
A
TRP
479
n
116
TRP
479
A
SER
480
n
117
SER
480
A
LEU
481
n
118
LEU
481
A
VAL
482
n
119
VAL
482
A
VAL
483
n
120
VAL
483
A
ILE
484
n
121
ILE
484
A
ASP
485
n
122
ASP
485
A
LEU
486
n
123
LEU
486
A
ARG
487
n
124
ARG
487
A
LYS
488
n
125
LYS
488
A
LYS
489
n
126
LYS
489
A
CYS
490
n
127
CYS
490
A
LEU
491
n
128
LEU
491
A
LYS
492
n
129
LYS
492
A
TYR
493
n
130
TYR
493
A
LEU
494
n
131
LEU
494
A
ASP
495
n
132
ASP
495
A
SER
496
n
133
SER
496
A
MET
497
n
134
MET
497
A
GLY
498
n
135
GLY
498
A
GLN
499
n
136
GLN
499
A
LYS
500
n
137
LYS
500
A
GLY
501
n
138
GLY
501
A
HIS
502
n
139
HIS
502
A
ARG
503
n
140
ARG
503
A
ILE
504
n
141
ILE
504
A
CYS
505
n
142
CYS
505
A
GLU
506
n
143
GLU
506
A
ILE
507
n
144
ILE
507
A
LEU
508
n
145
LEU
508
A
LEU
509
n
146
LEU
509
A
GLN
510
n
147
GLN
510
A
TYR
511
n
148
TYR
511
A
LEU
512
n
149
LEU
512
A
GLN
513
n
150
GLN
513
A
ASP
514
n
151
ASP
514
A
GLU
515
n
152
GLU
515
A
SER
516
n
153
SER
516
A
LYS
517
n
154
LYS
517
A
THR
518
n
155
THR
518
A
LYS
519
n
156
LYS
519
A
ARG
520
n
157
ARG
520
A
ASN
521
n
158
ASN
521
A
SER
522
n
159
SER
522
A
ASP
523
n
160
ASP
523
A
LEU
524
n
161
LEU
524
A
ASN
525
n
162
ASN
525
A
LEU
526
n
163
LEU
526
A
LEU
527
n
164
LEU
527
A
GLU
528
n
165
GLU
528
A
TRP
529
n
166
TRP
529
A
THR
530
n
167
THR
530
A
HIS
531
n
168
HIS
531
A
HIS
532
n
169
HIS
532
A
SER
533
n
170
SER
533
A
MET
534
n
171
MET
534
A
LYS
535
n
172
LYS
535
A
PRO
536
n
173
PRO
536
A
HIS
537
n
174
HIS
537
A
GLU
538
n
175
GLU
538
A
ILE
539
n
176
ILE
539
A
PRO
540
n
177
PRO
540
A
GLN
541
n
178
GLN
541
A
GLN
542
n
179
GLN
542
A
LEU
543
n
180
LEU
543
A
ASN
544
n
181
ASN
544
A
GLY
545
n
182
GLY
545
A
SER
546
n
183
SER
546
A
ASP
547
n
184
ASP
547
A
CYS
548
n
185
CYS
548
A
GLY
549
n
186
GLY
549
A
MET
550
n
187
MET
550
A
PHE
551
n
188
PHE
551
A
THR
552
n
189
THR
552
A
CYS
553
n
190
CYS
553
A
LYS
554
n
191
LYS
554
A
TYR
555
n
192
TYR
555
A
ALA
556
n
193
ALA
556
A
ASP
557
n
194
ASP
557
A
TYR
558
n
195
TYR
558
A
ILE
559
n
196
ILE
559
A
SER
560
n
197
SER
560
A
ARG
561
n
198
ARG
561
A
ASP
562
n
199
ASP
562
A
LYS
563
n
200
LYS
563
A
PRO
564
n
201
PRO
564
A
ILE
565
n
202
ILE
565
A
THR
566
n
203
THR
566
A
PHE
567
n
204
PHE
567
A
THR
568
n
205
THR
568
A
GLN
569
n
206
GLN
569
A
HIS
570
n
207
HIS
570
A
GLN
571
n
208
GLN
571
A
MET
572
n
209
MET
572
A
PRO
573
n
210
PRO
573
A
LEU
574
n
211
LEU
574
A
PHE
575
n
212
PHE
575
A
ARG
576
n
213
ARG
576
A
LYS
577
n
214
LYS
577
A
LYS
578
n
215
LYS
578
A
MET
579
n
216
MET
579
A
VAL
580
n
217
VAL
580
A
TRP
581
n
218
TRP
581
A
GLU
582
n
219
GLU
582
A
ILE
583
n
220
ILE
583
A
LEU
584
n
221
LEU
584
A
HIS
585
n
222
HIS
585
A
GLN
586
n
223
GLN
586
A
GLN
587
n
224
GLN
587
A
LEU
588
n
225
LEU
588
A
LEU
589
n
226
LEU
589
A
n
1
18
B
n
2
19
B
GLU
20
n
3
GLU
20
B
TYR
21
n
4
TYR
21
B
ILE
22
n
5
ILE
22
B
LYS
23
n
6
LYS
23
B
LEU
24
n
7
LEU
24
B
LYS
25
n
8
LYS
25
B
VAL
26
n
9
VAL
26
B
ILE
27
n
10
ILE
27
B
GLY
28
n
11
GLY
28
B
GLN
29
n
12
GLN
29
B
ASP
30
n
13
ASP
30
B
SER
31
n
14
SER
31
B
SER
32
n
15
SER
32
B
GLU
33
n
16
GLU
33
B
ILE
34
n
17
ILE
34
B
HIS
35
n
18
HIS
35
B
PHE
36
n
19
PHE
36
B
LYS
37
n
20
LYS
37
B
VAL
38
n
21
VAL
38
B
LYS
39
n
22
LYS
39
B
MET
40
n
23
MET
40
B
THR
41
n
24
THR
41
B
THR
42
n
25
THR
42
B
HIS
43
n
26
HIS
43
B
LEU
44
n
27
LEU
44
B
LYS
45
n
28
LYS
45
B
LYS
46
n
29
LYS
46
B
LEU
47
n
30
LEU
47
B
LYS
48
n
31
LYS
48
B
GLU
49
n
32
GLU
49
B
SER
50
n
33
SER
50
B
TYR
51
n
34
TYR
51
B
CYS
52
n
35
CYS
52
B
GLN
53
n
36
GLN
53
B
ARG
54
n
37
ARG
54
B
GLN
55
n
38
GLN
55
B
GLY
56
n
39
GLY
56
B
VAL
57
n
40
VAL
57
B
PRO
58
n
41
PRO
58
B
MET
59
n
42
MET
59
B
ASN
60
n
43
ASN
60
B
SER
61
n
44
SER
61
B
LEU
62
n
45
LEU
62
B
ARG
63
n
46
ARG
63
B
PHE
64
n
47
PHE
64
B
LEU
65
n
48
LEU
65
B
PHE
66
n
49
PHE
66
B
GLU
67
n
50
GLU
67
B
GLY
68
n
51
GLY
68
B
GLN
69
n
52
GLN
69
B
ARG
70
n
53
ARG
70
B
ILE
71
n
54
ILE
71
B
ALA
72
n
55
ALA
72
B
ASP
73
n
56
ASP
73
B
ASN
74
n
57
ASN
74
B
HIS
75
n
58
HIS
75
B
THR
76
n
59
THR
76
B
PRO
77
n
60
PRO
77
B
LYS
78
n
61
LYS
78
B
GLU
79
n
62
GLU
79
B
LEU
80
n
63
LEU
80
B
GLY
81
n
64
GLY
81
B
MET
82
n
65
MET
82
B
GLU
83
n
66
GLU
83
B
GLU
84
n
67
GLU
84
B
GLU
85
n
68
GLU
85
B
ASP
86
n
69
ASP
86
B
VAL
87
n
70
VAL
87
B
ILE
88
n
71
ILE
88
B
GLU
89
n
72
GLU
89
B
VAL
90
n
73
VAL
90
B
TYR
91
n
74
TYR
91
B
GLN
92
n
75
GLN
92
B
GLU
93
n
76
GLU
93
B
GLN
94
n
77
GLN
94
B
THR
95
n
78
THR
95
B
GLY
96
n
79
GLY
96
B
GLY
97
n
80
GLY
97
B
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
4
tetrameric
2530
-56
14750
5340
-127
29230
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
9_555
-x,-x+y,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
47.7020000000
A
N
LEU
389
A
N
LEU
26
A
O
ILE
397
A
O
ILE
34
A
N
LEU
411
A
N
LEU
48
B
O
GLY
96
B
O
GLY
79
A
N
HIS
436
A
N
HIS
73
A
O
LEU
470
A
O
LEU
107
A
N
ILE
469
A
N
ILE
106
A
O
ILE
484
A
O
ILE
121
A
N
VAL
483
A
N
VAL
120
A
O
LYS
492
A
O
LYS
129
A
N
LEU
491
A
N
LEU
128
A
O
THR
530
A
O
THR
167
B
O
VAL
38
B
O
VAL
21
B
N
ILE
22
B
N
ILE
5
B
N
LYS
25
B
N
LYS
8
B
O
ILE
88
B
O
ILE
71
B
O
GLU
89
B
O
GLU
72
B
N
LEU
65
B
N
LEU
48
B
N
PHE
66
B
N
PHE
49
B
O
GLN
69
B
O
GLN
52
1
A
CG
LEU
366
A
CG
LEU
3
1
Y
1
A
CD1
LEU
366
A
CD1
LEU
3
1
Y
1
A
CD2
LEU
366
A
CD2
LEU
3
1
Y
1
A
ASP
364
A
ASP
1
1
Y
1
A
LEU
365
A
LEU
2
1
Y
1
B
GLU
18
B
GLU
1
1
Y
1
B
GLY
19
B
GLY
2
1
Y
1
A
ALA
392
179.66
160.30
1
A
VAL
477
51.42
7.46
1
A
HIS
502
-34.93
-80.97
1
A
ASN
521
41.84
72.73
1
A
SER
522
-177.92
135.61
1
A
LEU
526
-48.94
-17.17
1
A
PRO
536
-37.38
-38.81
1
A
GLN
586
32.63
49.05
1
B
SER
31
80.73
-3.57
1
B
ILE
34
-164.15
118.18
1
B
ARG
54
-53.64
-6.03
1
B
ASN
60
-49.09
-17.73
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
54.3
0.10
8.16
0.00
0.10
0.00
-0.21
0.276
0.011
0.226
0.2261
2.80
20.00
612
13430
12149
5.0
90.8
RANDOM
1814230.36
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
Engh & Huber
FLAT MODEL
35.7793
0.34907
0.51
0.38
5.00
0.85
0.68
2.80
20.00
81
2608
25
0
2502
0.008
1.3
23.2
0.69
0.434
0.048
0.391
2.98
81
1495
6
5.1
72.4
27.2
2.80
20.
1TGZ
16622
15675
-2
0.129
1
10.8
94.3
0.841
2.80
2.93
0.9
84.8
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.1
Sentrin-specific protease 2 (E.C.3.4.22.-)/Ubiquitin-like protein SMT3C
Structure of human Senp2 in complex with SUMO-1
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
THR
369
A
THR
6
HELX_P
A
GLY
381
A
GLY
18
1
1
13
A
ARG
399
A
ARG
36
HELX_P
A
THR
404
A
THR
41
1
2
6
A
ASP
413
A
ASP
50
HELX_P
A
GLY
431
A
GLY
68
1
3
19
A
PHE
441
A
PHE
78
HELX_P
A
LYS
455
A
LYS
92
1
4
15
A
ARG
456
A
ARG
93
HELX_P
A
LYS
459
A
LYS
96
5
5
4
A
ASN
462
A
ASN
99
HELX_P
A
GLN
466
A
GLN
103
5
6
5
A
GLY
501
A
GLY
138
HELX_P
A
ARG
520
A
ARG
157
1
7
20
A
ASN
525
A
ASN
162
HELX_P
A
TRP
529
A
TRP
166
5
8
5
A
ASP
547
A
ASP
184
HELX_P
A
SER
560
A
SER
197
1
9
14
A
THR
568
A
THR
205
HELX_P
A
HIS
570
A
HIS
207
5
10
3
A
GLN
571
A
GLN
208
HELX_P
A
HIS
585
A
HIS
222
1
11
15
B
LEU
44
B
LEU
27
HELX_P
B
ARG
54
B
ARG
37
1
12
11
B
PRO
58
B
PRO
41
HELX_P
B
ASN
60
B
ASN
43
5
13
3
B
THR
76
B
THR
59
HELX_P
B
GLY
81
B
GLY
64
1
14
6
covale
2.060
A
CYS
548
A
SG
CYS
185
1_555
B
GLY
97
B
C
GLY
80
1_555
CELL CYCLE, HYDROLASE
SUMO; AXAM; SENP; ULP; PROTEASE, CELL CYCLE, HYDROLASE
SENP2_HUMAN
UNP
1
364
Q9HC62
DLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFY
PKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSD
LNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL
SMT3C_HUMAN
UNP
2
18
P63165
EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG
364
589
1TGZ
364
589
Q9HC62
A
1
1
226
18
97
1TGZ
18
97
P63165
B
2
1
80
2
2
5
5
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ILE
388
A
ILE
25
A
ALA
392
A
ALA
29
A
LEU
395
A
LEU
32
A
THR
398
A
THR
35
A
LEU
411
A
LEU
48
A
ASN
412
A
ASN
49
B
THR
95
B
THR
78
B
GLY
96
B
GLY
79
A
LEU
435
A
LEU
72
A
VAL
437
A
VAL
74
A
ILE
468
A
ILE
105
A
ARG
475
A
ARG
112
A
HIS
478
A
HIS
115
A
ASP
485
A
ASP
122
A
CYS
490
A
CYS
127
A
LEU
494
A
LEU
131
A
THR
530
A
THR
167
A
SER
533
A
SER
170
B
HIS
35
B
HIS
18
B
VAL
38
B
VAL
21
B
ILE
22
B
ILE
5
B
GLY
28
B
GLY
11
B
VAL
87
B
VAL
70
B
GLN
92
B
GLN
75
B
LEU
62
B
LEU
45
B
PHE
66
B
PHE
49
B
GLN
69
B
GLN
52
B
ARG
70
B
ARG
53
BINDING SITE FOR RESIDUE SO4 A 300
Software
4
BINDING SITE FOR RESIDUE SO4 A 301
Software
2
BINDING SITE FOR RESIDUE SO4 A 302
Software
5
BINDING SITE FOR RESIDUE SO4 A 303
Software
3
BINDING SITE FOR RESIDUE SO4 B 304
Software
4
A
ALA
392
A
ALA
29
4
1_555
A
PHE
393
A
PHE
30
4
1_555
A
LYS
394
A
LYS
31
4
1_555
A
ARG
396
A
ARG
33
4
1_555
A
ARG
475
A
ARG
112
2
1_555
A
LYS
476
A
LYS
113
2
1_555
A
HOH
57
H
HOH
5
1_555
A
LYS
488
A
LYS
125
5
1_555
A
LYS
492
A
LYS
129
5
1_555
A
LYS
535
A
LYS
172
5
9_555
A
HIS
537
A
HIS
174
5
9_555
A
PRO
384
A
PRO
21
3
1_555
A
GLN
385
A
GLN
22
3
1_555
A
ASP
386
A
ASP
23
3
1_555
A
ARG
396
A
ARG
33
4
1_555
B
ALA
72
B
ALA
55
4
1_555
B
ASP
73
B
ASP
56
4
1_555
B
ASN
74
B
ASN
57
4
1_555
179
hexagonal
P 65 2 2