0.014162 0.000000 0.002779 0.000000 0.013816 0.000000 0.000000 0.000000 0.013893 0.00000 0.00000 0.00000 RESIDUE PRO H 37 IS A CIS PROLINE. RESIDUE TYR I 63 IS SULFONATED. Qiu, X. Padmanabhan, K.P. Maryanoff, B.E. Tulinsky, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 101.10 90.00 70.610 72.380 73.350 C4 H8 N2 O3 132.118 n 3-amino-N-formyl-L-alanine L-peptide linking C7 H15 N4 O3 1 203.219 amino{[(4S)-4-amino-5-carboxy-5-oxopentyl]amino}methaniminium peptide-like C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C9 H11 N O2 165.189 D-PHENYLALANINE D-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H11 N O6 S 261.252 n O-SULFO-L-TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C11 H13 N O3 207.226 (2E,4S)-4-amino-5-(4-hydroxyphenyl)pent-2-enoic acid peptide-like N 1 N C N 2 N O N 3 N N N 4 S C N 5 N C N 6 N O N 7 N C N 8 N O N 9 N N N 10 N H N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N N N 19 S C N 20 N C N 21 N O N 22 N C N 23 N C N 24 N C N 25 N N N 26 N C N 27 N N N 28 N N N 29 N C N 30 N O N 31 N O N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N C N 48 N O N 49 N C N 50 N H N 51 N H N 52 N H N 53 N H N 54 N N N 55 S C N 56 N C N 57 N O N 58 N C N 59 N O N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N N N 68 S C N 69 N C N 70 N O N 71 N C N 72 N C N 73 N C N 74 N N N 75 N C N 76 N N N 77 N N N 78 N O N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N O N 101 N N N 102 N O N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N N N 112 S C N 113 N C N 114 N O N 115 N C N 116 N C N 117 N O N 118 N O N 119 N O N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 R C N 129 N C N 130 N O N 131 N C N 132 N S N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N N N 142 R C N 143 N C N 144 N O N 145 N O N 146 N C Y 147 N C Y 148 N C Y 149 N C Y 150 N C Y 151 N C Y 152 N C N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N N N 165 S C N 166 N C N 167 N O N 168 N C N 169 N C N 170 N C N 171 N O N 172 N N N 173 N O N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N O N 192 N O N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 N C N 205 N C N 206 N O N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C Y 218 N C Y 219 N N Y 220 N C Y 221 N C Y 222 N N N 223 N O N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N O N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 S C N 242 N C N 243 N C N 244 N C N 245 N O N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C N 286 N C N 287 N C N 288 N C N 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 N C N 311 N C N 312 N S N 313 N C N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C N 354 N C N 355 N C N 356 N O N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N N N 367 S C N 368 N C N 369 N O N 370 N C N 371 N O N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 R C N 385 N O N 386 N C N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N N Y 406 N C Y 407 N C Y 408 N C Y 409 N C Y 410 N C N 411 N O N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N N N 425 S C N 426 N C N 427 N O N 428 N C Y 429 N C Y 430 N C Y 431 N C Y 432 N C Y 433 N C Y 434 N C N 435 N O N 436 N O N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N N N 449 S C N 450 N C Y 451 N C Y 452 N C Y 453 N C Y 454 N C Y 455 N C Y 456 N C N 457 N O N 458 N S N 459 N O N 460 N O N 461 N O N 462 N C N 463 N O N 464 N O N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N N N 477 S C N 478 N C N 479 N O N 480 N C N 481 N C N 482 N C N 483 N O N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N N N 496 S C N 497 N C N 498 N C Y 499 N C Y 500 N C Y 501 N C Y 502 N C Y 503 N C Y 504 N C N 505 N O N 506 N C N 507 N C N 508 N O N 509 N O N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N doub N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N doub N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N doub N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing Y 145 N doub Y 146 N sing Y 147 N sing N 148 N sing Y 149 N doub N 150 N sing Y 151 N doub N 152 N sing Y 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing Y 213 N sing Y 214 N doub Y 215 N doub N 216 N sing Y 217 N sing N 218 N sing Y 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub N 326 N sing Y 327 N doub N 328 N sing Y 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing Y 390 N doub Y 391 N sing Y 392 N sing N 393 N sing Y 394 N doub Y 395 N sing Y 396 N sing N 397 N sing Y 398 N sing Y 399 N doub N 400 N sing Y 401 N doub N 402 N sing Y 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing Y 418 N doub Y 419 N sing Y 420 N sing N 421 N sing Y 422 N doub N 423 N sing Y 424 N doub N 425 N sing Y 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing Y 440 N doub Y 441 N sing Y 442 N sing N 443 N sing Y 444 N doub N 445 N sing Y 446 N doub N 447 N sing Y 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N doub N 453 N doub N 454 N sing N 455 N sing N 456 N doub N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N doub N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N doub N 483 E sing N 484 N sing N 485 N sing N 486 N sing Y 487 N doub Y 488 N sing Y 489 N sing N 490 N sing Y 491 N doub N 492 N sing Y 493 N doub N 494 N sing Y 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N doub N 502 N sing N 503 N sing N 504 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 90 8048 8052 10.1073/pnas.90.17.8048 8367461 Molecular basis for the inhibition of human alpha-thrombin by the macrocyclic peptide cyclotheonamide A. 1993 10.2210/pdb1tmb/pdb pdb_00001tmb 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 4096.534 ALPHA-THROMBIN (SMALL SUBUNIT) 3.4.21.5 1 nat polymer 29780.219 ALPHA-THROMBIN (LARGE SUBUNIT) 3.4.21.5 1 nat polymer 1632.654 HIRUGEN 1 syn polymer 750.821 cyclotheonamide A 1 nat polymer 18.015 water 239 nat water no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE H polypeptide(L) no yes (ACE)NEDFEEIPEE(TYS)L XNEDFEEIPEEYL I polypeptide(L) no yes (0MG)(DPN)(VLT)(0FL)P XFXAP T polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens human Homo sample 9606 Homo sapiens sponges sample 73791 Theonella sp. 2.54 51.65 atom_site chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_validate_main_chain_plane pdbx_validate_peptide_omega pdbx_validate_polymer_linkage pdbx_validate_torsion struct_conn struct_ref_seq_dif repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Structure summary Other Advisory Atomic model Data collection Database references Derived calculations Other 1 0 1994-01-31 1 1 2008-03-03 1 2 2011-07-13 1 3 2012-12-12 1 4 2013-02-27 1 5 2013-06-05 2 0 2023-11-15 _atom_site.auth_atom_id _atom_site.label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.omega _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details Y BNL 1993-05-27 REL HOH water THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN INDICATOR *H* IS USED FOR RESIDUES 16 - 247. CHAIN INDICATOR *I* IS USED FOR HIRUGEN. CAUTION SHOULD BE TAKEN IF SOLVENT MOLECULES WITH OCCUPANCY LESS THAN 0.5 ARE USED IN ANY STRUCTURAL OR BIOLOGICAL DISCUSSIONS. THE HIRUGEN RESIDUE NUMBERING CORRESPONDS TO THE C-TERMINAL RESIDUES OF HIRUDIN. Thrombin inhibitor CYCLOTHEONAMIDE A Cyclic peptide HOH 406 5 HOH HOH 406 L HOH 415 5 HOH HOH 415 L HOH 416 5 HOH HOH 416 L HOH 438 5 HOH HOH 438 L HOH 443 5 HOH HOH 443 L HOH 444 5 HOH HOH 444 L HOH 446 5 HOH HOH 446 L HOH 447 5 HOH HOH 447 L HOH 469 5 HOH HOH 469 L HOH 483 5 HOH HOH 483 L HOH 498 5 HOH HOH 498 L HOH 499 5 HOH HOH 499 L HOH 506 5 HOH HOH 506 L HOH 512 5 HOH HOH 512 L HOH 552 5 HOH HOH 552 L HOH 559 5 HOH HOH 559 L HOH 560 5 HOH HOH 560 L HOH 563 5 HOH HOH 563 L HOH 576 5 HOH HOH 576 L HOH 583 5 HOH HOH 583 L HOH 584 5 HOH HOH 584 L HOH 621 5 HOH HOH 621 L HOH 626 5 HOH HOH 626 L HOH 637 5 HOH HOH 637 L HOH 402 5 HOH HOH 402 H HOH 403 5 HOH HOH 403 H HOH 404 5 HOH HOH 404 H HOH 405 5 HOH HOH 405 H HOH 407 5 HOH HOH 407 H HOH 408 5 HOH HOH 408 H HOH 409 5 HOH HOH 409 H HOH 410 5 HOH HOH 410 H HOH 411 5 HOH HOH 411 H HOH 412 5 HOH HOH 412 H HOH 413 5 HOH HOH 413 H HOH 414 5 HOH HOH 414 H HOH 417 5 HOH HOH 417 H HOH 418 5 HOH HOH 418 H HOH 419 5 HOH HOH 419 H HOH 420 5 HOH HOH 420 H HOH 421 5 HOH HOH 421 H HOH 422 5 HOH HOH 422 H HOH 423 5 HOH HOH 423 H HOH 424 5 HOH HOH 424 H HOH 425 5 HOH HOH 425 H HOH 426 5 HOH HOH 426 H HOH 427 5 HOH HOH 427 H HOH 428 5 HOH HOH 428 H HOH 429 5 HOH HOH 429 H HOH 430 5 HOH HOH 430 H HOH 431 5 HOH HOH 431 H HOH 432 5 HOH HOH 432 H HOH 433 5 HOH HOH 433 H HOH 434 5 HOH HOH 434 H HOH 435 5 HOH HOH 435 H HOH 436 5 HOH HOH 436 H HOH 437 5 HOH HOH 437 H HOH 439 5 HOH HOH 439 H HOH 440 5 HOH HOH 440 H HOH 441 5 HOH HOH 441 H HOH 442 5 HOH HOH 442 H HOH 445 5 HOH HOH 445 H HOH 448 5 HOH HOH 448 H HOH 449 5 HOH HOH 449 H HOH 450 5 HOH HOH 450 H HOH 451 5 HOH HOH 451 H HOH 452 5 HOH HOH 452 H HOH 453 5 HOH HOH 453 H HOH 454 5 HOH HOH 454 H HOH 455 5 HOH HOH 455 H HOH 456 5 HOH HOH 456 H HOH 457 5 HOH HOH 457 H HOH 458 5 HOH HOH 458 H HOH 460 5 HOH HOH 460 H HOH 461 5 HOH HOH 461 H HOH 462 5 HOH HOH 462 H HOH 463 5 HOH HOH 463 H HOH 464 5 HOH HOH 464 H HOH 465 5 HOH HOH 465 H HOH 466 5 HOH HOH 466 H HOH 467 5 HOH HOH 467 H HOH 468 5 HOH HOH 468 H HOH 470 5 HOH HOH 470 H HOH 471 5 HOH HOH 471 H HOH 472 5 HOH HOH 472 H HOH 473 5 HOH HOH 473 H HOH 474 5 HOH HOH 474 H HOH 475 5 HOH HOH 475 H HOH 476 5 HOH HOH 476 H HOH 477 5 HOH HOH 477 H HOH 478 5 HOH HOH 478 H HOH 479 5 HOH HOH 479 H HOH 480 5 HOH HOH 480 H HOH 481 5 HOH HOH 481 H HOH 482 5 HOH HOH 482 H HOH 484 5 HOH HOH 484 H HOH 485 5 HOH HOH 485 H HOH 486 5 HOH HOH 486 H HOH 487 5 HOH HOH 487 H HOH 488 5 HOH HOH 488 H HOH 489 5 HOH HOH 489 H HOH 490 5 HOH HOH 490 H HOH 491 5 HOH HOH 491 H HOH 492 5 HOH HOH 492 H HOH 493 5 HOH HOH 493 H HOH 494 5 HOH HOH 494 H HOH 495 5 HOH HOH 495 H HOH 496 5 HOH HOH 496 H HOH 497 5 HOH HOH 497 H HOH 500 5 HOH HOH 500 H HOH 501 5 HOH HOH 501 H HOH 502 5 HOH HOH 502 H HOH 503 5 HOH HOH 503 H HOH 504 5 HOH HOH 504 H HOH 505 5 HOH HOH 505 H HOH 507 5 HOH HOH 507 H HOH 508 5 HOH HOH 508 H HOH 509 5 HOH HOH 509 H HOH 510 5 HOH HOH 510 H HOH 511 5 HOH HOH 511 H HOH 513 5 HOH HOH 513 H HOH 514 5 HOH HOH 514 H HOH 515 5 HOH HOH 515 H HOH 517 5 HOH HOH 517 H HOH 518 5 HOH HOH 518 H HOH 520 5 HOH HOH 520 H HOH 521 5 HOH HOH 521 H HOH 522 5 HOH HOH 522 H HOH 523 5 HOH HOH 523 H HOH 524 5 HOH HOH 524 H HOH 525 5 HOH HOH 525 H HOH 526 5 HOH HOH 526 H HOH 527 5 HOH HOH 527 H HOH 528 5 HOH HOH 528 H HOH 529 5 HOH HOH 529 H HOH 530 5 HOH HOH 530 H HOH 531 5 HOH HOH 531 H HOH 532 5 HOH HOH 532 H HOH 534 5 HOH HOH 534 H HOH 535 5 HOH HOH 535 H HOH 536 5 HOH HOH 536 H HOH 537 5 HOH HOH 537 H HOH 538 5 HOH HOH 538 H HOH 539 5 HOH HOH 539 H HOH 540 5 HOH HOH 540 H HOH 541 5 HOH HOH 541 H HOH 542 5 HOH HOH 542 H HOH 543 5 HOH HOH 543 H HOH 544 5 HOH HOH 544 H HOH 545 5 HOH HOH 545 H HOH 546 5 HOH HOH 546 H HOH 547 5 HOH HOH 547 H HOH 548 5 HOH HOH 548 H HOH 549 5 HOH HOH 549 H HOH 551 5 HOH HOH 551 H HOH 553 5 HOH HOH 553 H HOH 554 5 HOH HOH 554 H HOH 555 5 HOH HOH 555 H HOH 556 5 HOH HOH 556 H HOH 557 5 HOH HOH 557 H HOH 558 5 HOH HOH 558 H HOH 561 5 HOH HOH 561 H HOH 562 5 HOH HOH 562 H HOH 564 5 HOH HOH 564 H HOH 565 5 HOH HOH 565 H HOH 566 5 HOH HOH 566 H HOH 567 5 HOH HOH 567 H HOH 568 5 HOH HOH 568 H HOH 569 5 HOH HOH 569 H HOH 570 5 HOH HOH 570 H HOH 571 5 HOH HOH 571 H HOH 572 5 HOH HOH 572 H HOH 573 5 HOH HOH 573 H HOH 574 5 HOH HOH 574 H HOH 575 5 HOH HOH 575 H HOH 577 5 HOH HOH 577 H HOH 578 5 HOH HOH 578 H HOH 579 5 HOH HOH 579 H HOH 580 5 HOH HOH 580 H HOH 582 5 HOH HOH 582 H HOH 585 5 HOH HOH 585 H HOH 586 5 HOH HOH 586 H HOH 587 5 HOH HOH 587 H HOH 589 5 HOH HOH 589 H HOH 590 5 HOH HOH 590 H HOH 591 5 HOH HOH 591 H HOH 592 5 HOH HOH 592 H HOH 593 5 HOH HOH 593 H HOH 594 5 HOH HOH 594 H HOH 595 5 HOH HOH 595 H HOH 596 5 HOH HOH 596 H HOH 598 5 HOH HOH 598 H HOH 600 5 HOH HOH 600 H HOH 601 5 HOH HOH 601 H HOH 602 5 HOH HOH 602 H HOH 603 5 HOH HOH 603 H HOH 606 5 HOH HOH 606 H HOH 607 5 HOH HOH 607 H HOH 608 5 HOH HOH 608 H HOH 609 5 HOH HOH 609 H HOH 611 5 HOH HOH 611 H HOH 612 5 HOH HOH 612 H HOH 613 5 HOH HOH 613 H HOH 614 5 HOH HOH 614 H HOH 615 5 HOH HOH 615 H HOH 616 5 HOH HOH 616 H HOH 617 5 HOH HOH 617 H HOH 618 5 HOH HOH 618 H HOH 619 5 HOH HOH 619 H HOH 620 5 HOH HOH 620 H HOH 622 5 HOH HOH 622 H HOH 623 5 HOH HOH 623 H HOH 624 5 HOH HOH 624 H HOH 625 5 HOH HOH 625 H HOH 627 5 HOH HOH 627 H HOH 628 5 HOH HOH 628 H HOH 629 5 HOH HOH 629 H HOH 630 5 HOH HOH 630 H HOH 631 5 HOH HOH 631 H HOH 632 5 HOH HOH 632 H HOH 633 5 HOH HOH 633 H HOH 634 5 HOH HOH 634 H HOH 635 5 HOH HOH 635 H HOH 636 5 HOH HOH 636 H HOH 638 5 HOH HOH 638 H HOH 639 5 HOH HOH 639 H HOH 459 5 HOH HOH 459 I HOH 516 5 HOH HOH 516 I HOH 519 5 HOH HOH 519 I HOH 550 5 HOH HOH 550 I HOH 588 5 HOH HOH 588 I HOH 599 5 HOH HOH 599 I HOH 604 5 HOH HOH 604 I HOH 401 5 HOH HOH 401 T HOH 533 5 HOH HOH 533 T HOH 581 5 HOH HOH 581 T HOH 597 5 HOH HOH 597 T HOH 605 5 HOH HOH 605 T HOH 610 5 HOH HOH 610 T n 1 H 1 L n 2 G 1 L n 3 F 1 L n 4 E 1 L GLY 1 n 5 D GLY 1 L GLU 1 n 6 C GLU 1 L ALA 1 n 7 B ALA 1 L ASP 1 n 8 A ASP 1 L CYS 1 n 9 CYS 1 L GLY 2 n 10 GLY 2 L LEU 3 n 11 LEU 3 L ARG 4 n 12 ARG 4 L PRO 5 n 13 PRO 5 L LEU 6 n 14 LEU 6 L PHE 7 n 15 PHE 7 L GLU 8 n 16 GLU 8 L LYS 9 n 17 LYS 9 L LYS 10 n 18 LYS 10 L SER 11 n 19 SER 11 L LEU 12 n 20 LEU 12 L GLU 13 n 21 GLU 13 L ASP 14 n 22 ASP 14 L LYS 14 n 23 A LYS 14 L THR 14 n 24 B THR 14 L GLU 14 n 25 C GLU 14 L ARG 14 n 26 D ARG 14 L GLU 14 n 27 E GLU 14 L LEU 14 n 28 F LEU 14 L LEU 14 n 29 G LEU 14 L GLU 14 n 30 H GLU 14 L SER 14 n 31 I SER 14 L TYR 14 n 32 J TYR 14 L ILE 14 n 33 K ILE 14 L n 34 L 14 L n 35 M 14 L n 36 N 14 L ILE 16 n 1 ILE 16 H VAL 17 n 2 VAL 17 H GLU 18 n 3 GLU 18 H GLY 19 n 4 GLY 19 H SER 20 n 5 SER 20 H ASP 21 n 6 ASP 21 H ALA 22 n 7 ALA 22 H GLU 23 n 8 GLU 23 H ILE 24 n 9 ILE 24 H GLY 25 n 10 GLY 25 H MET 26 n 11 MET 26 H SER 27 n 12 SER 27 H PRO 28 n 13 PRO 28 H TRP 29 n 14 TRP 29 H GLN 30 n 15 GLN 30 H VAL 31 n 16 VAL 31 H MET 32 n 17 MET 32 H LEU 33 n 18 LEU 33 H PHE 34 n 19 PHE 34 H ARG 35 n 20 ARG 35 H LYS 36 n 21 LYS 36 H SER 36 n 22 A SER 36 H PRO 37 n 23 PRO 37 H GLN 38 n 24 GLN 38 H GLU 39 n 25 GLU 39 H LEU 40 n 26 LEU 40 H LEU 41 n 27 LEU 41 H CYS 42 n 28 CYS 42 H GLY 43 n 29 GLY 43 H ALA 44 n 30 ALA 44 H SER 45 n 31 SER 45 H LEU 46 n 32 LEU 46 H ILE 47 n 33 ILE 47 H SER 48 n 34 SER 48 H ASP 49 n 35 ASP 49 H ARG 50 n 36 ARG 50 H TRP 51 n 37 TRP 51 H VAL 52 n 38 VAL 52 H LEU 53 n 39 LEU 53 H THR 54 n 40 THR 54 H ALA 55 n 41 ALA 55 H ALA 56 n 42 ALA 56 H HIS 57 n 43 HIS 57 H CYS 58 n 44 CYS 58 H LEU 59 n 45 LEU 59 H LEU 60 n 46 LEU 60 H TYR 60 n 47 A TYR 60 H PRO 60 n 48 B PRO 60 H PRO 60 n 49 C PRO 60 H TRP 60 n 50 D TRP 60 H ASP 60 n 51 E ASP 60 H LYS 60 n 52 F LYS 60 H ASN 60 n 53 G ASN 60 H PHE 60 n 54 H PHE 60 H THR 60 n 55 I THR 60 H GLU 61 n 56 GLU 61 H ASN 62 n 57 ASN 62 H ASP 63 n 58 ASP 63 H LEU 64 n 59 LEU 64 H LEU 65 n 60 LEU 65 H VAL 66 n 61 VAL 66 H ARG 67 n 62 ARG 67 H ILE 68 n 63 ILE 68 H GLY 69 n 64 GLY 69 H LYS 70 n 65 LYS 70 H HIS 71 n 66 HIS 71 H SER 72 n 67 SER 72 H ARG 73 n 68 ARG 73 H THR 74 n 69 THR 74 H ARG 75 n 70 ARG 75 H TYR 76 n 71 TYR 76 H GLU 77 n 72 GLU 77 H ARG 77 n 73 A ARG 77 H ASN 78 n 74 ASN 78 H ILE 79 n 75 ILE 79 H GLU 80 n 76 GLU 80 H LYS 81 n 77 LYS 81 H ILE 82 n 78 ILE 82 H SER 83 n 79 SER 83 H MET 84 n 80 MET 84 H LEU 85 n 81 LEU 85 H GLU 86 n 82 GLU 86 H LYS 87 n 83 LYS 87 H ILE 88 n 84 ILE 88 H TYR 89 n 85 TYR 89 H ILE 90 n 86 ILE 90 H HIS 91 n 87 HIS 91 H PRO 92 n 88 PRO 92 H ARG 93 n 89 ARG 93 H TYR 94 n 90 TYR 94 H ASN 95 n 91 ASN 95 H TRP 96 n 92 TRP 96 H ARG 97 n 93 ARG 97 H GLU 97 n 94 A GLU 97 H ASN 98 n 95 ASN 98 H LEU 99 n 96 LEU 99 H ASP 100 n 97 ASP 100 H ARG 101 n 98 ARG 101 H ASP 102 n 99 ASP 102 H ILE 103 n 100 ILE 103 H ALA 104 n 101 ALA 104 H LEU 105 n 102 LEU 105 H MET 106 n 103 MET 106 H LYS 107 n 104 LYS 107 H LEU 108 n 105 LEU 108 H LYS 109 n 106 LYS 109 H LYS 110 n 107 LYS 110 H PRO 111 n 108 PRO 111 H VAL 112 n 109 VAL 112 H ALA 113 n 110 ALA 113 H PHE 114 n 111 PHE 114 H SER 115 n 112 SER 115 H ASP 116 n 113 ASP 116 H TYR 117 n 114 TYR 117 H ILE 118 n 115 ILE 118 H HIS 119 n 116 HIS 119 H PRO 120 n 117 PRO 120 H VAL 121 n 118 VAL 121 H CYS 122 n 119 CYS 122 H LEU 123 n 120 LEU 123 H PRO 124 n 121 PRO 124 H ASP 125 n 122 ASP 125 H ARG 126 n 123 ARG 126 H GLU 127 n 124 GLU 127 H THR 128 n 125 THR 128 H ALA 129 n 126 ALA 129 H ALA 129 n 127 A ALA 129 H SER 129 n 128 B SER 129 H LEU 129 n 129 C LEU 129 H LEU 130 n 130 LEU 130 H GLN 131 n 131 GLN 131 H ALA 132 n 132 ALA 132 H GLY 133 n 133 GLY 133 H TYR 134 n 134 TYR 134 H LYS 135 n 135 LYS 135 H GLY 136 n 136 GLY 136 H ARG 137 n 137 ARG 137 H VAL 138 n 138 VAL 138 H THR 139 n 139 THR 139 H GLY 140 n 140 GLY 140 H TRP 141 n 141 TRP 141 H GLY 142 n 142 GLY 142 H ASN 143 n 143 ASN 143 H LEU 144 n 144 LEU 144 H LYS 145 n 145 LYS 145 H GLU 146 n 146 GLU 146 H THR 147 n 147 THR 147 H n 148 A 147 H n 149 B 147 H n 150 C 147 H n 151 D 147 H n 152 E 147 H n 153 F 147 H n 154 G 147 H GLY 150 n 155 GLY 150 H GLN 151 n 156 GLN 151 H PRO 152 n 157 PRO 152 H SER 153 n 158 SER 153 H VAL 154 n 159 VAL 154 H LEU 155 n 160 LEU 155 H GLN 156 n 161 GLN 156 H VAL 157 n 162 VAL 157 H VAL 158 n 163 VAL 158 H ASN 159 n 164 ASN 159 H LEU 160 n 165 LEU 160 H PRO 161 n 166 PRO 161 H ILE 162 n 167 ILE 162 H VAL 163 n 168 VAL 163 H GLU 164 n 169 GLU 164 H ARG 165 n 170 ARG 165 H PRO 166 n 171 PRO 166 H VAL 167 n 172 VAL 167 H CYS 168 n 173 CYS 168 H LYS 169 n 174 LYS 169 H ASP 170 n 175 ASP 170 H SER 171 n 176 SER 171 H THR 172 n 177 THR 172 H ARG 173 n 178 ARG 173 H ILE 174 n 179 ILE 174 H ARG 175 n 180 ARG 175 H ILE 176 n 181 ILE 176 H THR 177 n 182 THR 177 H ASP 178 n 183 ASP 178 H ASN 179 n 184 ASN 179 H MET 180 n 185 MET 180 H PHE 181 n 186 PHE 181 H CYS 182 n 187 CYS 182 H ALA 183 n 188 ALA 183 H GLY 184 n 189 GLY 184 H TYR 184 n 190 A TYR 184 H LYS 185 n 191 LYS 185 H PRO 186 n 192 PRO 186 H ASP 186 n 193 A ASP 186 H GLU 186 n 194 B GLU 186 H GLY 186 n 195 C GLY 186 H LYS 186 n 196 D LYS 186 H ARG 187 n 197 ARG 187 H GLY 188 n 198 GLY 188 H ASP 189 n 199 ASP 189 H ALA 190 n 200 ALA 190 H CYS 191 n 201 CYS 191 H GLU 192 n 202 GLU 192 H GLY 193 n 203 GLY 193 H ASP 194 n 204 ASP 194 H SER 195 n 205 SER 195 H GLY 196 n 206 GLY 196 H GLY 197 n 207 GLY 197 H PRO 198 n 208 PRO 198 H PHE 199 n 209 PHE 199 H VAL 200 n 210 VAL 200 H MET 201 n 211 MET 201 H LYS 202 n 212 LYS 202 H SER 203 n 213 SER 203 H PRO 204 n 214 PRO 204 H PHE 204 n 215 A PHE 204 H ASN 204 n 216 B ASN 204 H ASN 205 n 217 ASN 205 H ARG 206 n 218 ARG 206 H TRP 207 n 219 TRP 207 H TYR 208 n 220 TYR 208 H GLN 209 n 221 GLN 209 H MET 210 n 222 MET 210 H GLY 211 n 223 GLY 211 H ILE 212 n 224 ILE 212 H VAL 213 n 225 VAL 213 H SER 214 n 226 SER 214 H TRP 215 n 227 TRP 215 H GLY 216 n 228 GLY 216 H GLU 217 n 229 GLU 217 H GLY 219 n 230 GLY 219 H CYS 220 n 231 CYS 220 H ASP 221 n 232 ASP 221 H ARG 221 n 233 A ARG 221 H ASP 222 n 234 ASP 222 H GLY 223 n 235 GLY 223 H LYS 224 n 236 LYS 224 H TYR 225 n 237 TYR 225 H GLY 226 n 238 GLY 226 H PHE 227 n 239 PHE 227 H TYR 228 n 240 TYR 228 H THR 229 n 241 THR 229 H HIS 230 n 242 HIS 230 H VAL 231 n 243 VAL 231 H PHE 232 n 244 PHE 232 H ARG 233 n 245 ARG 233 H LEU 234 n 246 LEU 234 H LYS 235 n 247 LYS 235 H LYS 236 n 248 LYS 236 H TRP 237 n 249 TRP 237 H ILE 238 n 250 ILE 238 H GLN 239 n 251 GLN 239 H LYS 240 n 252 LYS 240 H VAL 241 n 253 VAL 241 H ILE 242 n 254 ILE 242 H ASP 243 n 255 ASP 243 H GLN 244 n 256 GLN 244 H PHE 245 n 257 PHE 245 H GLY 246 n 258 GLY 246 H GLU 247 n 259 GLU 247 H n 1 52 I n 2 53 I n 3 54 I ASP 55 n 4 ASP 55 I PHE 56 n 5 PHE 56 I GLU 57 n 6 GLU 57 I GLU 58 n 7 GLU 58 I ILE 59 n 8 ILE 59 I PRO 60 n 9 PRO 60 I GLU 61 n 10 GLU 61 I GLU 62 n 11 GLU 62 I TYS 63 n 12 TYS 63 I LEU 64 n 13 LEU 64 I 0MG 48 n 1 0MG 48 T DPN 49 n 2 DPN 49 T VLT 50 n 3 VLT 50 T 0FL 51 n 4 0FL 51 T PRO 52 n 5 PRO 52 T author_and_software_defined_assembly PISA 4 tetrameric 5560 -22 12290 I TYS 63 O-SULFO-L-TYROSINE C TYS 12 TYR T 0FL 51 3-AMINO-N-FORMYL-L-ALANINE D 0FL 4 ALA 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H O SER 20 B O SER 5 H N VAL 157 B N VAL 162 H N LEU 160 B N LEU 165 H O GLY 136 B O GLY 136 H N THR 139 B N THR 139 H O PRO 198 B O PRO 208 H O MET 201 B O MET 211 H N TYR 208 B N TYR 220 H N SER 214 B N SER 226 H O PHE 227 B O PHE 239 H N TYR 228 B N TYR 240 H O PHE 181 B O PHE 186 H N ARG 35 B N ARG 20 H O GLU 39 B O GLU 25 H O SER 45 B O SER 31 H N LEU 53 B N LEU 39 H N THR 54 B N THR 40 H O ALA 104 B O ALA 101 H O LYS 107 B O LYS 104 H N GLU 86 B N GLU 82 H N LEU 85 B N LEU 81 H O LEU 64 B O LEU 59 H O ARG 67 B O ARG 62 H N MET 32 B N MET 17 1 H HOH 432 F HOH 1 H HOH 551 F HOH 1 I HOH 459 G HOH 1 H CD LYS 81 B CD LYS 77 1 Y 1 H CE LYS 81 B CE LYS 77 1 Y 1 H NZ LYS 81 B NZ LYS 77 1 Y 1 H CG GLN 244 B CG GLN 256 1 Y 1 H CD GLN 244 B CD GLN 256 1 Y 1 H OE1 GLN 244 B OE1 GLN 256 1 Y 1 H NE2 GLN 244 B NE2 GLN 256 1 Y 1 I CB GLU 58 C CB GLU 7 1 Y 1 I CG GLU 58 C CG GLU 7 1 Y 1 I CD GLU 58 C CD GLU 7 1 Y 1 I OE1 GLU 58 C OE1 GLU 7 1 Y 1 I OE2 GLU 58 C OE2 GLU 7 1 Y 1 I CB GLU 61 C CB GLU 10 1 Y 1 I CG GLU 61 C CG GLU 10 1 Y 1 I CD GLU 61 C CD GLU 10 1 Y 1 I OE1 GLU 61 C OE1 GLU 10 1 Y 1 I OE2 GLU 61 C OE2 GLU 10 1 Y H 1 L THR 1 A THR 1 1 Y G 1 L PHE 1 A PHE 2 1 Y F 1 L GLY 1 A GLY 3 1 Y E 1 L SER 1 A SER 4 1 Y L 1 L ASP 14 A ASP 34 1 Y M 1 L GLY 14 A GLY 35 1 Y N 1 L ARG 14 A ARG 36 1 Y A 1 H TRP 147 B TRP 148 1 Y B 1 H THR 147 B THR 149 1 Y C 1 H ALA 147 B ALA 150 1 Y D 1 H ASN 147 B ASN 151 1 Y E 1 H VAL 147 B VAL 152 1 Y F 1 H GLY 147 B GLY 153 1 Y G 1 H LYS 147 B LYS 154 1 Y 1 I ACE 52 C ACE 1 1 Y 1 I ASN 53 C ASN 2 1 Y 1 I GLU 54 C GLU 3 1 Y I 1 H H OG1 ND2 THR ASN 60 62 2.01 1 H H NH1 O ARG LEU 50 108 2.03 1 H T OG O1 SER 0MG 195 48 2.11 1 H H NH2 OD1 ARG ASP 187 222 2.18 1 T T VLT 0FL 50 51 -137.96 C C C 1 8.80 1.20 123.30 132.10 L L L OE1 CD OE2 GLU GLU GLU 1 1 1 N 1 6.90 1.10 114.20 121.10 L L L CA CB SG CYS CYS CYS 1 1 1 N 1 -13.80 2.00 110.40 96.60 L L L CB CA C GLU GLU GLU 13 13 13 N 1 10.05 1.20 123.30 133.35 L L L OE1 CD OE2 GLU GLU GLU 13 13 13 N C C C 1 12.92 2.00 118.30 131.22 L L L CG CD OE1 GLU GLU GLU 14 14 14 N D D D 1 -4.61 0.50 120.30 115.69 L L L NE CZ NH2 ARG ARG ARG 14 14 14 N 1 7.21 0.90 118.30 125.51 H H H CB CG OD1 ASP ASP ASP 21 21 21 N 1 -5.48 0.90 118.30 112.82 H H H CB CG OD2 ASP ASP ASP 21 21 21 N 1 3.47 0.50 120.30 123.77 H H H NE CZ NH1 ARG ARG ARG 35 35 35 N 1 -6.19 0.50 120.30 114.11 H H H NE CZ NH2 ARG ARG ARG 35 35 35 N 1 -13.91 2.00 110.40 96.49 H H H CB CA C GLN GLN GLN 38 38 38 N 1 14.02 2.20 113.40 127.42 H H H CA CB CG GLN GLN GLN 38 38 38 N 1 8.67 0.90 118.30 126.97 H H H CB CG OD2 ASP ASP ASP 49 49 49 N 1 4.63 0.50 120.30 124.93 H H H NE CZ NH1 ARG ARG ARG 50 50 50 N A A A 1 -6.00 0.60 121.00 115.00 H H H CB CG CD1 TYR TYR TYR 60 60 60 N 1 8.93 1.40 123.60 132.53 H H H CD NE CZ ARG ARG ARG 67 67 67 N 1 3.26 0.50 120.30 123.56 H H H NE CZ NH1 ARG ARG ARG 67 67 67 N 1 55.05 1.40 123.60 178.65 H H H CD NE CZ ARG ARG ARG 73 73 73 N 1 -5.92 0.50 120.30 114.38 H H H NE CZ NH1 ARG ARG ARG 73 73 73 N 1 3.78 0.50 120.30 124.08 H H H NE CZ NH2 ARG ARG ARG 73 73 73 N 1 14.57 2.30 110.00 124.57 H H H OG1 CB CG2 THR THR THR 74 74 74 N 1 19.31 1.40 123.60 142.91 H H H CD NE CZ ARG ARG ARG 75 75 75 N 1 4.77 0.50 120.30 125.07 H H H NE CZ NH1 ARG ARG ARG 75 75 75 N A A A 1 -13.99 2.10 120.10 106.11 H H H CA C O ARG ARG ARG 77 77 77 N A A 1 16.96 2.20 117.20 134.16 H H H CA C N ARG ARG ASN 77 77 78 Y 1 13.27 2.00 118.30 131.57 H H H CG CD OE2 GLU GLU GLU 80 80 80 N 1 7.46 1.20 123.30 130.76 H H H OE1 CD OE2 GLU GLU GLU 86 86 86 N 1 8.65 1.40 123.60 132.25 H H H CD NE CZ ARG ARG ARG 93 93 93 N 1 -5.44 0.50 120.30 114.86 H H H NE CZ NH2 ARG ARG ARG 93 93 93 N 1 3.14 0.50 120.30 123.44 H H H NE CZ NH1 ARG ARG ARG 101 101 101 N 1 -6.53 0.70 120.80 114.27 H H H CB CG CD1 PHE PHE PHE 114 114 114 N 1 11.95 1.90 110.10 122.05 H H H CB CA C SER SER SER 115 115 115 N 1 7.78 0.90 118.30 126.08 H H H CB CG OD1 ASP ASP ASP 116 116 116 N 1 -8.55 0.90 118.30 109.75 H H H CB CG OD2 ASP ASP ASP 116 116 116 N 1 6.00 0.90 118.30 124.30 H H H CB CG OD1 ASP ASP ASP 125 125 125 N 1 -7.74 0.90 118.30 110.56 H H H CB CG OD2 ASP ASP ASP 125 125 125 N 1 4.87 0.50 120.30 125.17 H H H NE CZ NH1 ARG ARG ARG 126 126 126 N 1 -6.09 0.50 120.30 114.21 H H H NE CZ NH2 ARG ARG ARG 126 126 126 N 1 4.46 0.50 120.30 124.76 H H H NE CZ NH1 ARG ARG ARG 137 137 137 N 1 -13.48 2.20 111.50 98.02 H H H N CA CB VAL VAL VAL 154 154 154 N 1 -10.38 1.20 123.30 112.92 H H H OE1 CD OE2 GLU GLU GLU 164 164 164 N 1 5.31 0.50 120.30 125.61 H H H NE CZ NH1 ARG ARG ARG 165 165 165 N 1 11.24 1.60 110.90 122.14 H H H CG1 CB CG2 VAL VAL VAL 167 167 167 N 1 3.83 0.50 120.30 124.13 H H H NE CZ NH1 ARG ARG ARG 173 173 173 N A A A 1 4.22 0.60 121.00 125.22 H H H CB CG CD2 TYR TYR TYR 184 184 184 N A A A 1 -5.59 0.60 121.00 115.41 H H H CB CG CD1 TYR TYR TYR 184 184 184 N 1 -13.58 1.40 123.60 110.02 H H H CD NE CZ ARG ARG ARG 187 187 187 N 1 -6.84 0.50 120.30 113.46 H H H NE CZ NH1 ARG ARG ARG 187 187 187 N 1 3.52 0.50 120.30 123.82 H H H NE CZ NH2 ARG ARG ARG 187 187 187 N 1 20.86 2.70 114.20 135.06 H H H CB CG CD GLU GLU GLU 192 192 192 N 1 -9.32 1.20 123.30 113.98 H H H OE1 CD OE2 GLU GLU GLU 192 192 192 N 1 -6.63 0.90 118.30 111.67 H H H CB CG OD1 ASP ASP ASP 194 194 194 N 1 6.93 0.90 118.30 125.23 H H H CB CG OD2 ASP ASP ASP 194 194 194 N 1 10.71 1.50 110.90 121.61 H H H CA CB CG1 VAL VAL VAL 200 200 200 N 1 9.89 0.50 120.30 130.19 H H H NE CZ NH1 ARG ARG ARG 206 206 206 N 1 -4.73 0.50 120.30 115.57 H H H NE CZ NH2 ARG ARG ARG 206 206 206 N A A A 1 12.56 1.40 123.60 136.16 H H H CD NE CZ ARG ARG ARG 221 221 221 N 1 7.06 0.90 118.30 125.36 H H H CB CG OD1 ASP ASP ASP 222 222 222 N 1 -5.97 0.60 121.00 115.03 H H H CB CG CD1 TYR TYR TYR 225 225 225 N 1 13.96 2.30 110.00 123.96 H H H OG1 CB CG2 THR THR THR 229 229 229 N 1 4.01 0.50 120.30 124.31 H H H NE CZ NH1 ARG ARG ARG 233 233 233 N 1 -6.04 0.50 120.30 114.26 H H H NE CZ NH2 ARG ARG ARG 233 233 233 N 1 8.10 0.90 118.30 126.40 H H H CB CG OD1 ASP ASP ASP 243 243 243 N 1 19.81 2.50 121.70 141.51 H H H C N CA GLY GLU GLU 246 247 247 Y 1 12.50 2.00 118.30 130.80 I I I CG CD OE2 GLU GLU GLU 62 62 62 N 1 H I NH1 OE1 ARG GLU 75 57 2.18 1_555 2_555 C 1 L GLU 1 -48.33 85.37 B 1 L ALA 1 -161.83 -28.02 1 L PHE 7 -129.37 -92.36 J 1 L TYR 14 -88.47 37.80 A 1 H SER 36 -174.53 113.57 1 H SER 48 -171.58 -177.42 G 1 H ASN 60 -155.28 62.37 1 H HIS 71 -127.42 -58.77 1 H GLU 77 -55.59 67.84 A 1 H ARG 77 -27.12 -61.50 1 H ILE 79 -94.84 -63.31 1 H ASN 98 -152.98 23.21 1 H ARG 101 71.21 35.61 1 H ASP 102 -65.73 78.10 1 H ASN 205 38.05 43.98 1 H SER 214 -107.00 -69.48 1 T 0FL 51 150.59 -88.05 0.138 2.3 1 2.3 239 2644 0 0 2405 0.2 5.0 refinement PROLSQ MOLECULAR BASIS FOR THE INHIBITION OF HUMAN ALPHA-THROMBIN BY THE MACROCYCLIC PEPTIDE CYCLOTHEONAMIDE A 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 5 N N L PHE 7 A PHE 15 HELX_P L SER 11 A SER 19 5 1 5 L THR 14 A THR 24 HELX_P L TYR 14 A TYR 32 1 2 9 B J H ALA 55 B ALA 41 HELX_P H CYS 58 B CYS 44 5 3 4 H PRO 60 B PRO 48 HELX_P H ASP 60 B ASP 51 5 4 4 B E H THR 60 B THR 55 HELX_P H ASN 62 B ASN 57 5 5 3 I H ASP 125 B ASP 122 HELX_P H LEU 130 B LEU 130 1 6 9 H GLU 164 B GLU 169 HELX_P H SER 171 B SER 176 1 7 8 H LYS 185 B LYS 191 HELX_P H GLY 186 B GLY 195 5 8 5 C H LEU 234 B LEU 246 HELX_P H GLY 246 B GLY 258 1 9 13 I PRO 60 C PRO 9 HELX_P I LEU 64 C LEU 13 5 10 5 disulf 2.077 L CYS 1 A SG CYS 9 1_555 H CYS 122 B SG CYS 119 1_555 disulf 2.027 H CYS 42 B SG CYS 28 1_555 H CYS 58 B SG CYS 44 1_555 disulf 2.031 H CYS 168 B SG CYS 173 1_555 H CYS 182 B SG CYS 187 1_555 disulf 2.038 H CYS 191 B SG CYS 201 1_555 H CYS 220 B SG CYS 231 1_555 covale 1.757 none H SER 195 B OG SER 205 1_555 T 0MG 48 D CA 0MG 1 1_555 covale 1.326 both I GLU 62 C C GLU 11 1_555 I TYS 63 C N TYS 12 1_555 covale 1.327 both I TYS 63 C C TYS 12 1_555 I LEU 64 C N LEU 13 1_555 covale 1.338 both T 0MG 48 D C 0MG 1 1_555 T DPN 49 D N DPN 2 1_555 covale 1.319 both T 0MG 48 D N 0MG 1 1_555 T PRO 52 D C PRO 5 1_555 covale 1.313 both T DPN 49 D C DPN 2 1_555 T VLT 50 D N VLT 3 1_555 covale 1.303 both T VLT 50 D C VLT 3 1_555 T 0FL 51 D N 0FL 4 1_555 covale 1.303 both T 0FL 51 D C 0FL 4 1_555 T PRO 52 D N PRO 5 1_555 HYDROLASE/hydrolase inhibitor SERINE PROTEINASE, HYDROLASE-hydrolase inhibitor complex H SER 36 B SER 22 A 1 H PRO 37 B PRO 23 -0.89 THRB_HUMAN UNP 1 1 P00734 THRB_HUMAN UNP 2 1 P00734 ITH3_HIRME UNP 3 1 P09945 NOR00471 NOR 4 1 NOR00471 328 363 1TMB 1 14 P00734 H N L 1 1 36 364 622 1TMB 16 247 P00734 H 2 1 259 60 71 1TMB 53 64 P09945 I 3 2 13 1 5 1TMB 48 52 NOR00471 T 4 1 5 3 GLY conflict GLU 54 1TMB I P09945 UNP 61 3 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H SER 20 B SER 5 H ASP 21 B ASP 6 H GLN 156 B GLN 161 H PRO 161 B PRO 166 H LYS 135 B LYS 135 H GLY 140 B GLY 140 H PRO 198 B PRO 208 H LYS 202 B LYS 212 H TRP 207 B TRP 219 H TRP 215 B TRP 227 H GLY 226 B GLY 238 H HIS 230 B HIS 242 H MET 180 B MET 185 H ALA 183 B ALA 188 H GLN 30 B GLN 15 H ARG 35 B ARG 20 H GLU 39 B GLU 25 H LEU 46 B LEU 32 H TRP 51 B TRP 37 H THR 54 B THR 40 H ALA 104 B ALA 101 H LEU 108 B LEU 105 H LYS 81 B LYS 77 H ILE 90 B ILE 86 H LEU 64 B LEU 59 H ILE 68 B ILE 63 H GLN 30 B GLN 15 H ARG 35 B ARG 20 CATALYTIC SITE Unknown 3 BINDING SITE FOR CHAIN I OF HIRUGEN Software 14 BINDING SITE FOR CHAIN T OF CYCLOTHEONAMIDE A Software 19 H HIS 57 B HIS 43 3 1_555 H ASP 102 B ASP 99 3 1_555 H SER 195 B SER 205 3 1_555 H PHE 34 B PHE 19 14 1_555 H LYS 36 B LYS 21 14 1_555 H GLN 38 B GLN 24 14 1_555 H ARG 73 B ARG 68 14 1_555 H THR 74 B THR 69 14 1_555 H ARG 75 B ARG 70 14 1_555 H ARG 75 B ARG 70 14 2_555 H TYR 76 B TYR 71 14 1_555 H LYS 81 B LYS 77 14 1_555 H ILE 82 B ILE 78 14 1_555 H MET 84 B MET 80 14 1_555 H HOH 424 F HOH 14 1_555 I HOH 519 G HOH 14 1_555 I HOH 588 G HOH 14 1_555 H LEU 40 B LEU 26 19 1_555 H LEU 41 B LEU 27 19 1_555 H HIS 57 B HIS 43 19 1_555 H TYR 60 B TYR 47 A 19 1_555 H TRP 60 B TRP 50 D 19 1_555 H LEU 99 B LEU 96 19 1_555 H ASP 189 B ASP 199 19 1_555 H ALA 190 B ALA 200 19 1_555 H CYS 191 B CYS 201 19 1_555 H GLU 192 B GLU 202 19 1_555 H GLY 193 B GLY 203 19 1_555 H ASP 194 B ASP 204 19 1_555 H SER 195 B SER 205 19 1_555 H SER 214 B SER 226 19 1_555 H TRP 215 B TRP 227 19 1_555 H GLY 216 B GLY 228 19 1_555 H GLY 219 B GLY 230 19 1_555 T HOH 401 H HOH 19 1_555 T HOH 610 H HOH 19 1_555 5 C 1 2 1