0.016269
0.000000
0.012552
0.000000
0.034106
0.000000
0.000000
0.000000
0.030397
0.00000
0.00000
0.00000
Hoh, F.
Pons, J.L.
Gautier, M.F.
De Lamotte, F.
Dumas, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
127.65
90.00
61.465
29.320
41.550
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
I -1
126.904
IODIDE ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C22 H44 O9 P -1
483.553
1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)]
LYSOPHOSPHATIDYLGLYCEROL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
61
397
406
10.1107/S0907444905000417
15805594
Structure of a liganded type 2 non-specific lipid-transfer protein from wheat and the molecular basis of lipid binding.
2005
US
J.BIOL.CHEM.
JBCHA3
0071
0021-9258
278
14249
14256
10.1074/jbc.M211683200
12525478
Refined solution structure of a liganded type 2 wheat nonspecific lipid transfer protein
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-09-16
MARRESEARCH
Mirror
SINGLE WAVELENGTH
M
x-ray
1
0.80
1.0
BM14
ESRF
0.80
SYNCHROTRON
ESRF BEAMLINE BM14
6985.943
Nonspecific lipid-transfer protein 2G
1
nat
polymer
126.904
IODIDE ION
2
syn
non-polymer
483.553
1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)]
2
syn
non-polymer
18.015
water
75
nat
water
ns-LTP2, LTP2G, Lipid transfer protein 2 isoform 1, LTP2-1, 7 kDa lipid transfer protein 1
no
no
ACQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC
ACQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bread wheat
Triticum
sample
4565
Triticum aestivum
1
1.91
35.5
VAPOR DIFFUSION, HANGING DROP
6
PEG 6000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
repository
Initial release
Version format compliance
Version format compliance
Structure summary
Refinement description
1
0
2005-04-05
1
1
2008-04-30
1
2
2011-07-13
1
3
2016-12-28
1
4
2017-10-11
_software.name
NMR structure
RCSB
Y
PDBJ
2004-06-25
REL
REL
IOD
IODIDE ION
PGM
1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)]
HOH
water
IDO
101
2
IOD
IOD
101
A
IDO
102
2
IOD
IOD
102
A
PGM
103
3
PGM
PGM
103
A
PGM
104
3
PGM
PGM
104
A
HOH
1
4
HOH
HOH
105
A
HOH
2
4
HOH
HOH
106
A
HOH
3
4
HOH
HOH
107
A
HOH
4
4
HOH
HOH
108
A
HOH
5
4
HOH
HOH
109
A
HOH
6
4
HOH
HOH
110
A
HOH
7
4
HOH
HOH
111
A
HOH
8
4
HOH
HOH
112
A
HOH
9
4
HOH
HOH
113
A
HOH
10
4
HOH
HOH
114
A
HOH
11
4
HOH
HOH
115
A
HOH
12
4
HOH
HOH
116
A
HOH
13
4
HOH
HOH
117
A
HOH
14
4
HOH
HOH
118
A
HOH
15
4
HOH
HOH
119
A
HOH
16
4
HOH
HOH
120
A
HOH
17
4
HOH
HOH
121
A
HOH
18
4
HOH
HOH
122
A
HOH
19
4
HOH
HOH
123
A
HOH
20
4
HOH
HOH
124
A
HOH
22
4
HOH
HOH
125
A
HOH
23
4
HOH
HOH
126
A
HOH
24
4
HOH
HOH
127
A
HOH
25
4
HOH
HOH
128
A
HOH
26
4
HOH
HOH
129
A
HOH
27
4
HOH
HOH
130
A
HOH
28
4
HOH
HOH
131
A
HOH
29
4
HOH
HOH
132
A
HOH
30
4
HOH
HOH
133
A
HOH
31
4
HOH
HOH
134
A
HOH
32
4
HOH
HOH
135
A
HOH
33
4
HOH
HOH
136
A
HOH
34
4
HOH
HOH
137
A
HOH
35
4
HOH
HOH
138
A
HOH
36
4
HOH
HOH
139
A
HOH
37
4
HOH
HOH
140
A
HOH
38
4
HOH
HOH
141
A
HOH
39
4
HOH
HOH
142
A
HOH
40
4
HOH
HOH
143
A
HOH
41
4
HOH
HOH
144
A
HOH
42
4
HOH
HOH
145
A
HOH
43
4
HOH
HOH
146
A
HOH
44
4
HOH
HOH
147
A
HOH
45
4
HOH
HOH
148
A
HOH
46
4
HOH
HOH
149
A
HOH
47
4
HOH
HOH
150
A
HOH
48
4
HOH
HOH
151
A
HOH
49
4
HOH
HOH
152
A
HOH
50
4
HOH
HOH
153
A
HOH
51
4
HOH
HOH
154
A
HOH
52
4
HOH
HOH
155
A
HOH
53
4
HOH
HOH
156
A
HOH
54
4
HOH
HOH
157
A
HOH
55
4
HOH
HOH
158
A
HOH
57
4
HOH
HOH
159
A
HOH
58
4
HOH
HOH
160
A
HOH
59
4
HOH
HOH
161
A
HOH
60
4
HOH
HOH
162
A
HOH
61
4
HOH
HOH
163
A
HOH
62
4
HOH
HOH
164
A
HOH
63
4
HOH
HOH
165
A
HOH
64
4
HOH
HOH
166
A
HOH
65
4
HOH
HOH
167
A
HOH
66
4
HOH
HOH
168
A
HOH
67
4
HOH
HOH
169
A
HOH
68
4
HOH
HOH
170
A
HOH
69
4
HOH
HOH
171
A
HOH
70
4
HOH
HOH
172
A
HOH
71
4
HOH
HOH
173
A
HOH
72
4
HOH
HOH
174
A
HOH
73
4
HOH
HOH
175
A
HOH
75
4
HOH
HOH
176
A
HOH
76
4
HOH
HOH
177
A
HOH
78
4
HOH
HOH
178
A
HOH
79
4
HOH
HOH
179
A
ALA
1
n
1
ALA
1
A
CYS
2
n
2
CYS
2
A
GLN
3
n
3
GLN
3
A
ALA
4
n
4
ALA
4
A
SER
5
n
5
SER
5
A
GLN
6
n
6
GLN
6
A
LEU
7
n
7
LEU
7
A
ALA
8
n
8
ALA
8
A
VAL
9
n
9
VAL
9
A
CYS
10
n
10
CYS
10
A
ALA
11
n
11
ALA
11
A
SER
12
n
12
SER
12
A
ALA
13
n
13
ALA
13
A
ILE
14
n
14
ILE
14
A
LEU
15
n
15
LEU
15
A
SER
16
n
16
SER
16
A
GLY
17
n
17
GLY
17
A
ALA
18
n
18
ALA
18
A
LYS
19
n
19
LYS
19
A
PRO
20
n
20
PRO
20
A
SER
21
n
21
SER
21
A
GLY
22
n
22
GLY
22
A
GLU
23
n
23
GLU
23
A
CYS
24
n
24
CYS
24
A
CYS
25
n
25
CYS
25
A
GLY
26
n
26
GLY
26
A
ASN
27
n
27
ASN
27
A
LEU
28
n
28
LEU
28
A
ARG
29
n
29
ARG
29
A
ALA
30
n
30
ALA
30
A
GLN
31
n
31
GLN
31
A
GLN
32
n
32
GLN
32
A
GLY
33
n
33
GLY
33
A
CYS
34
n
34
CYS
34
A
PHE
35
n
35
PHE
35
A
CYS
36
n
36
CYS
36
A
GLN
37
n
37
GLN
37
A
TYR
38
n
38
TYR
38
A
ALA
39
n
39
ALA
39
A
LYS
40
n
40
LYS
40
A
ASP
41
n
41
ASP
41
A
PRO
42
n
42
PRO
42
A
THR
43
n
43
THR
43
A
TYR
44
n
44
TYR
44
A
GLY
45
n
45
GLY
45
A
GLN
46
n
46
GLN
46
A
TYR
47
n
47
TYR
47
A
ILE
48
n
48
ILE
48
A
ARG
49
n
49
ARG
49
A
SER
50
n
50
SER
50
A
PRO
51
n
51
PRO
51
A
HIS
52
n
52
HIS
52
A
ALA
53
n
53
ALA
53
A
ARG
54
n
54
ARG
54
A
ASP
55
n
55
ASP
55
A
THR
56
n
56
THR
56
A
LEU
57
n
57
LEU
57
A
THR
58
n
58
THR
58
A
SER
59
n
59
SER
59
A
CYS
60
n
60
CYS
60
A
GLY
61
n
61
GLY
61
A
LEU
62
n
62
LEU
62
A
ALA
63
n
63
ALA
63
A
VAL
64
n
64
VAL
64
A
PRO
65
n
65
PRO
65
A
HIS
66
n
66
HIS
66
A
CYS
67
n
67
CYS
67
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
C1
PGM
104
E
C1
PGM
1
1
N
1
A
O1
PGM
104
E
O1
PGM
1
1
N
1
A
C2
PGM
104
E
C2
PGM
1
1
N
1
A
O2
PGM
104
E
O2
PGM
1
1
N
1
A
C3
PGM
104
E
C3
PGM
1
1
N
1
A
O4
PGM
104
E
O4
PGM
1
1
N
1
A
P5
PGM
104
E
P5
PGM
1
1
N
1
A
O5A
PGM
104
E
O5A
PGM
1
1
N
1
A
O5B
PGM
104
E
O5B
PGM
1
1
N
1
A
O6
PGM
104
E
O6
PGM
1
1
N
1
A
C7
PGM
104
E
C7
PGM
1
1
N
1
A
C8
PGM
104
E
C8
PGM
1
1
N
1
A
O8
PGM
104
E
O8
PGM
1
1
N
1
A
C9
PGM
104
E
C9
PGM
1
1
N
1
A
OQ1
PGM
104
E
OQ1
PGM
1
1
N
1
A
OQ2
PGM
104
E
OQ2
PGM
1
1
N
1
A
CA
PGM
104
E
CA
PGM
1
1
N
1
A
CB
PGM
104
E
CB
PGM
1
1
N
1
A
CC
PGM
104
E
CC
PGM
1
1
N
1
A
CD
PGM
104
E
CD
PGM
1
1
N
1
A
CE
PGM
104
E
CE
PGM
1
1
N
1
A
CF
PGM
104
E
CF
PGM
1
1
N
1
A
C8
PGM
103
PLANAR
1
A
A
O5B
O
PGM
HOH
103
171
2.05
1
A
A
NE2
O
GLN
HOH
31
110
2.07
A
1
A
A
O
O
HOH
HOH
136
141
2.16
1
A
A
O
NH1
ARG
ARG
49
54
2.19
A
1
A
A
O5B
O
PGM
HOH
103
108
2.19
1
3.65
0.50
120.30
123.95
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
54
54
54
B
B
B
N
1
A
A
CD
NE2
GLN
GLN
37
37
1.55
1_555
2_655
1
A
A
O
O
HOH
HOH
152
153
2.03
1_555
4_656
1
A
A
O
O4
SER
PGM
59
103
2.08
1_555
1_545
1
A
A
O
O
HOH
HOH
170
178
2.16
1_555
1_545
12.01
0.23000
0.00000
0.37000
-0.58000
0.00000
0.80000
0.969
0.970
0.162
0.137
0.138
0.138
1.12
32.9
1097
21350
22496
5.1
94.8
0.855
0.018
RANDOM
1
THROUGHOUT
0.0
AB INITIO PHASING
0.032
0.029
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.12
32.9
75
602
44
0
483
0.020
0.021
551
0.003
0.020
500
1.937
2.017
738
3.493
3.000
1181
5.336
5.000
66
46.855
23.636
22
12.830
15.000
80
27.839
15.000
4
0.128
0.200
75
0.010
0.020
590
0.007
0.020
100
0.303
0.200
144
0.247
0.200
491
0.187
0.200
262
0.093
0.200
303
0.401
0.200
77
0.660
0.200
28
0.388
0.200
46
0.456
0.200
29
2.313
1.500
339
1.325
1.500
138
3.190
2.000
533
4.442
3.000
225
6.124
4.500
205
0.227
0.253
1.153
55
1269
20
79.71
1.12
32.97
1TUK
22535
22535
0.
0.
1
94.8
1.123
1.153
1
79.71
refinement
REFMAC
5.2.0003
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
SnB
Nonspecific lipid-transfer protein 2G
Crystal structure of liganded type 2 non specific lipid transfer protein from wheat
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
A
GLN
3
A
GLN
3
HELX_P
A
VAL
9
A
VAL
9
5
1
7
A
CYS
10
A
CYS
10
HELX_P
A
GLY
17
A
GLY
17
1
2
8
A
SER
21
A
SER
21
HELX_P
A
GLN
32
A
GLN
32
1
3
12
A
CYS
34
A
CYS
34
HELX_P
A
ALA
39
A
ALA
39
1
4
6
A
TYR
44
A
TYR
44
HELX_P
A
ARG
49
A
ARG
49
1
5
6
A
SER
50
A
SER
50
HELX_P
A
CYS
60
A
CYS
60
1
6
11
disulf
2.047
A
CYS
2
A
SG
CYS
2
1_555
A
CYS
34
A
SG
CYS
34
1_555
disulf
2.057
A
CYS
10
A
SG
CYS
10
1_555
A
CYS
24
A
SG
CYS
24
1_555
disulf
2.028
A
CYS
25
A
SG
CYS
25
1_555
A
CYS
60
A
SG
CYS
60
1_555
disulf
2.036
A
CYS
36
A
SG
CYS
36
1_555
A
CYS
67
A
SG
CYS
67
1_555
LIPID TRANSPORT
ns-LTP2, lipid transfer protein, LIPID TRANSPORT
NLT2G_WHEAT
UNP
1
1
P82900
ACQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC
1
67
1TUK
1
67
P82900
A
1
1
67
BINDING SITE FOR RESIDUE IOD A 101
Software
4
BINDING SITE FOR RESIDUE IOD A 102
Software
1
BINDING SITE FOR RESIDUE PGM A 103
Software
23
BINDING SITE FOR RESIDUE PGM A 104
Software
3
A
ARG
29
A
ARG
29
4
1_555
A
ARG
29
A
ARG
29
4
2_655
A
GLN
32
A
GLN
32
4
2_655
A
GLN
32
A
GLN
32
4
1_555
A
SER
12
A
SER
12
1
2_656
A
ILE
14
A
ILE
14
23
1_555
A
LYS
19
A
LYS
19
23
1_565
A
ALA
39
A
ALA
39
23
1_555
A
LYS
40
A
LYS
40
23
1_555
A
PRO
42
A
PRO
42
23
1_555
A
ILE
48
A
ILE
48
23
1_555
A
ARG
49
A
ARG
49
23
1_555
A
PRO
51
A
PRO
51
23
4_656
A
ARG
54
A
ARG
54
23
4_656
A
THR
58
A
THR
58
23
1_565
A
SER
59
A
SER
59
23
1_565
A
CYS
60
A
CYS
60
23
1_565
A
GLY
61
A
GLY
61
23
1_565
A
PRO
65
A
PRO
65
23
1_555
A
CYS
67
A
CYS
67
23
1_555
A
HOH
106
F
HOH
23
1_555
A
HOH
107
F
HOH
23
1_555
A
HOH
108
F
HOH
23
1_555
A
HOH
137
F
HOH
23
1_555
A
HOH
151
F
HOH
23
4_656
A
HOH
154
F
HOH
23
1_555
A
HOH
171
F
HOH
23
1_555
A
HOH
172
F
HOH
23
1_555
A
TYR
47
A
TYR
47
3
2_656
A
HOH
136
F
HOH
3
2_656
A
HOH
162
F
HOH
3
1_555
5
C 1 2 1