0.019342
0.000000
0.000000
0.000000
0.019342
0.000000
0.000000
0.000000
0.005845
0.00000
0.00000
0.00000
Myers, J.C.
Shamoo, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
51.701
51.701
171.098
C10 H14 N5 O6 P
331.222
n
2-AMINO-9-[2-DEOXYRIBOFURANOSYL]-9H-PURINE-5'-MONOPHOSPHATE
2-AMINOPURINE-2'-DEOXYRIBO-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
Y
18
N
N
Y
19
N
C
N
20
N
N
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
N
N
38
S
C
N
39
N
C
N
40
N
O
N
41
N
C
N
42
N
O
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
N
N
51
S
C
N
52
N
C
N
53
N
O
N
54
N
C
N
55
N
C
N
56
N
C
N
57
N
N
N
58
N
C
N
59
N
N
N
60
N
N
N
61
N
O
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
C
N
83
N
O
N
84
N
N
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
R
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
S
N
116
N
O
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
Y
136
N
N
Y
137
N
C
Y
138
N
N
Y
139
N
C
Y
140
N
C
N
141
N
N
Y
142
N
N
Y
143
N
C
Y
144
N
N
Y
145
N
C
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
O
N
161
N
P
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
C
N
166
R
C
N
167
N
O
N
168
S
C
N
169
N
O
N
170
N
C
N
171
R
C
Y
172
N
N
Y
173
N
C
Y
174
N
N
Y
175
N
C
N
176
N
C
N
177
N
O
N
178
N
N
N
179
N
C
N
180
N
N
N
181
N
N
Y
182
N
C
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
O
N
198
N
P
N
199
N
O
N
200
N
O
N
201
N
O
N
202
N
C
N
203
R
C
N
204
N
O
N
205
S
C
N
206
N
O
N
207
N
C
N
208
R
C
N
209
N
N
N
210
N
C
N
211
N
O
N
212
N
N
N
213
N
C
N
214
N
O
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
N
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
N
C
N
274
N
C
N
275
N
O
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
Y
287
N
C
Y
288
N
N
Y
289
N
C
Y
290
N
C
Y
291
N
N
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
S
C
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
N
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
C
N
381
N
S
N
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
N
N
436
S
C
N
437
N
C
N
438
N
O
N
439
N
C
N
440
N
O
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
N
N
450
S
C
N
451
N
C
N
452
N
O
N
453
R
C
N
454
N
O
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
N
N
467
S
C
N
468
N
C
N
469
N
O
N
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
N
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
C
N
480
N
O
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
N
N
494
S
C
N
495
N
C
N
496
N
O
N
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
Y
502
N
C
Y
503
N
C
N
504
N
O
N
505
N
O
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
N
N
518
S
C
N
519
N
C
N
520
N
O
N
521
N
C
N
522
N
C
N
523
N
C
N
524
N
O
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
Y
31
N
doub
N
32
N
sing
Y
33
N
sing
N
34
N
sing
Y
35
N
doub
N
36
N
sing
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
Y
144
N
sing
Y
145
N
sing
Y
146
N
doub
N
147
N
sing
Y
148
N
sing
Y
149
N
sing
Y
150
N
doub
N
151
N
sing
Y
152
N
doub
N
153
N
sing
N
154
N
sing
Y
155
N
sing
Y
156
N
doub
N
157
N
sing
Y
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
Y
182
N
sing
Y
183
N
sing
Y
184
N
doub
N
185
N
sing
Y
186
N
sing
N
187
N
sing
Y
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
Y
292
N
sing
Y
293
N
doub
Y
294
N
doub
N
295
N
sing
Y
296
N
sing
N
297
N
sing
Y
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
Y
400
N
doub
Y
401
N
sing
Y
402
N
sing
N
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
doub
N
407
N
sing
Y
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
doub
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
doub
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
doub
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
Y
469
N
doub
Y
470
N
sing
Y
471
N
sing
N
472
N
sing
Y
473
N
doub
Y
474
N
sing
Y
475
N
sing
N
476
N
sing
Y
477
N
sing
Y
478
N
doub
N
479
N
sing
Y
480
N
doub
N
481
N
sing
Y
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
doub
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
Y
497
N
doub
Y
498
N
sing
Y
499
N
sing
N
500
N
sing
Y
501
N
doub
N
502
N
sing
Y
503
N
doub
N
504
N
sing
Y
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
doub
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
342
743
756
10.1016/j.jmb.2004.07.029
15342234
Human UP1 as a Model for Understanding Purine Recognition in the Family of Proteins Containing the RNA Recognition Motif (RRM).
2004
10.2210/pdb1u1p/pdb
pdb_00001u1p
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
103.0
1
osmic mirrors
IMAGE PLATE
2002-09-30
RIGAKU RAXIS IV++
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH3R
3757.463
5'-D(*T*TP*AP*GP*GP*GP*TP*TP*AP*(2PR)P*GP*G)-3'
1
syn
polymer
22303.082
Heterogeneous nuclear ribonucleoprotein A1
1
man
polymer
18.015
water
195
nat
water
Helix-destabilizing protein, Single-strand binding protein, hnRNP core protein A1
no
yes
(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(2PR)(DG)(DG)
TTAGGGTTAGGG
B
polydeoxyribonucleotide
no
no
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD
GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD
KIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGR
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD
GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD
KIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
HNRPA1
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21DE3
plasmid
pYS45
1
2.317
45.925
VAPOR DIFFUSION, HANGING DROP
8.1
ammonium phosphate, glycerol, Tris, sodium chloride, MES, EDTA, beta-mercaptoethanol, pH 8.1, VAPOR DIFFUSION, HANGING DROP, temperature 283.0K
283.0
ammonium phosphate
1
Tris
1
sodium chloride
1
MES
1
EDTA
1
H2O
1
ammonium phosphate
2
glycerol
2
Tris
2
sodium chloride
2
MES
2
EDTA
2
beta-mercaptoethanol
2
H2O
2
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
pdbx_database_related
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
Database references
1
0
2004-09-21
1
1
2008-04-30
1
2
2011-07-13
1
3
2023-08-23
1
4
2023-11-29
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_pdbx_database_related.db_name
Structure Of Up1-Telomeric DNA Complex
Crystal Structure Of UP1 Complexed With d(TTAGGGTTAG(6-Mi) G); A Human Telomeric Repeat
Containing 6-Methyl-8-(2- Deoxy--Ribofuranosyl)Isoxanthopteridine (6-Mi)
Crystal Structure Of UP1 Complexed With d(TTAGG(6MI)TTAGGG); A Human Telomeric Repeat
Containing 6-Methyl-8-(2- Deoxy--Ribofuranosyl)Isoxanthopteridine (6-Mi)
RCSB
Y
RCSB
2004-07-15
REL
REL
HOH
water
Oligonucleotide d(TTAGGGTTA(2PR)GG) based on human telomeric repeat d(TTAGGG)n
sample
2UP1
PDB ENTRY 2UP1
PDB
experimental model
TIP
5
3
HOH
HOH
5
B
TIP
18
3
HOH
HOH
18
B
TIP
25
3
HOH
HOH
25
B
TIP
26
3
HOH
HOH
26
B
TIP
35
3
HOH
HOH
35
B
TIP
38
3
HOH
HOH
38
B
TIP
62
3
HOH
HOH
62
B
TIP
65
3
HOH
HOH
65
B
TIP
76
3
HOH
HOH
76
B
TIP
77
3
HOH
HOH
77
B
TIP
91
3
HOH
HOH
91
B
TIP
92
3
HOH
HOH
92
B
TIP
110
3
HOH
HOH
110
B
TIP
116
3
HOH
HOH
116
B
TIP
123
3
HOH
HOH
123
B
TIP
125
3
HOH
HOH
125
B
TIP
132
3
HOH
HOH
132
B
TIP
135
3
HOH
HOH
135
B
TIP
138
3
HOH
HOH
138
B
TIP
142
3
HOH
HOH
142
B
TIP
145
3
HOH
HOH
145
B
TIP
153
3
HOH
HOH
153
B
TIP
154
3
HOH
HOH
154
B
TIP
157
3
HOH
HOH
157
B
TIP
170
3
HOH
HOH
170
B
TIP
180
3
HOH
HOH
180
B
TIP
1
3
HOH
HOH
197
A
TIP
2
3
HOH
HOH
198
A
TIP
3
3
HOH
HOH
199
A
TIP
4
3
HOH
HOH
200
A
TIP
6
3
HOH
HOH
201
A
TIP
7
3
HOH
HOH
202
A
TIP
8
3
HOH
HOH
203
A
TIP
9
3
HOH
HOH
204
A
TIP
10
3
HOH
HOH
205
A
TIP
11
3
HOH
HOH
206
A
TIP
12
3
HOH
HOH
207
A
TIP
13
3
HOH
HOH
208
A
TIP
14
3
HOH
HOH
209
A
TIP
15
3
HOH
HOH
210
A
TIP
16
3
HOH
HOH
211
A
TIP
17
3
HOH
HOH
212
A
TIP
19
3
HOH
HOH
213
A
TIP
20
3
HOH
HOH
214
A
TIP
21
3
HOH
HOH
215
A
TIP
22
3
HOH
HOH
216
A
TIP
23
3
HOH
HOH
217
A
TIP
24
3
HOH
HOH
218
A
TIP
27
3
HOH
HOH
219
A
TIP
28
3
HOH
HOH
220
A
TIP
29
3
HOH
HOH
221
A
TIP
30
3
HOH
HOH
222
A
TIP
31
3
HOH
HOH
223
A
TIP
32
3
HOH
HOH
224
A
TIP
33
3
HOH
HOH
225
A
TIP
34
3
HOH
HOH
226
A
TIP
36
3
HOH
HOH
227
A
TIP
37
3
HOH
HOH
228
A
TIP
39
3
HOH
HOH
229
A
TIP
40
3
HOH
HOH
230
A
TIP
41
3
HOH
HOH
231
A
TIP
42
3
HOH
HOH
232
A
TIP
43
3
HOH
HOH
233
A
TIP
44
3
HOH
HOH
234
A
TIP
45
3
HOH
HOH
235
A
TIP
46
3
HOH
HOH
236
A
TIP
47
3
HOH
HOH
237
A
TIP
48
3
HOH
HOH
238
A
TIP
49
3
HOH
HOH
239
A
TIP
50
3
HOH
HOH
240
A
TIP
51
3
HOH
HOH
241
A
TIP
52
3
HOH
HOH
242
A
TIP
53
3
HOH
HOH
243
A
TIP
54
3
HOH
HOH
244
A
TIP
55
3
HOH
HOH
245
A
TIP
56
3
HOH
HOH
246
A
TIP
57
3
HOH
HOH
247
A
TIP
58
3
HOH
HOH
248
A
TIP
59
3
HOH
HOH
249
A
TIP
60
3
HOH
HOH
250
A
TIP
61
3
HOH
HOH
251
A
TIP
63
3
HOH
HOH
252
A
TIP
64
3
HOH
HOH
253
A
TIP
66
3
HOH
HOH
254
A
TIP
67
3
HOH
HOH
255
A
TIP
68
3
HOH
HOH
256
A
TIP
69
3
HOH
HOH
257
A
TIP
70
3
HOH
HOH
258
A
TIP
71
3
HOH
HOH
259
A
TIP
72
3
HOH
HOH
260
A
TIP
73
3
HOH
HOH
261
A
TIP
74
3
HOH
HOH
262
A
TIP
75
3
HOH
HOH
263
A
TIP
78
3
HOH
HOH
264
A
TIP
79
3
HOH
HOH
265
A
TIP
80
3
HOH
HOH
266
A
TIP
81
3
HOH
HOH
267
A
TIP
82
3
HOH
HOH
268
A
TIP
83
3
HOH
HOH
269
A
TIP
84
3
HOH
HOH
270
A
TIP
85
3
HOH
HOH
271
A
TIP
86
3
HOH
HOH
272
A
TIP
87
3
HOH
HOH
273
A
TIP
88
3
HOH
HOH
274
A
TIP
89
3
HOH
HOH
275
A
TIP
90
3
HOH
HOH
276
A
TIP
93
3
HOH
HOH
277
A
TIP
94
3
HOH
HOH
278
A
TIP
95
3
HOH
HOH
279
A
TIP
96
3
HOH
HOH
280
A
TIP
97
3
HOH
HOH
281
A
TIP
98
3
HOH
HOH
282
A
TIP
99
3
HOH
HOH
283
A
TIP
100
3
HOH
HOH
284
A
TIP
101
3
HOH
HOH
285
A
TIP
102
3
HOH
HOH
286
A
TIP
103
3
HOH
HOH
287
A
TIP
104
3
HOH
HOH
288
A
TIP
105
3
HOH
HOH
289
A
TIP
106
3
HOH
HOH
290
A
TIP
107
3
HOH
HOH
291
A
TIP
108
3
HOH
HOH
292
A
TIP
109
3
HOH
HOH
293
A
TIP
111
3
HOH
HOH
294
A
TIP
112
3
HOH
HOH
295
A
TIP
113
3
HOH
HOH
296
A
TIP
114
3
HOH
HOH
297
A
TIP
115
3
HOH
HOH
298
A
TIP
117
3
HOH
HOH
299
A
TIP
118
3
HOH
HOH
300
A
TIP
119
3
HOH
HOH
301
A
TIP
120
3
HOH
HOH
302
A
TIP
121
3
HOH
HOH
303
A
TIP
122
3
HOH
HOH
304
A
TIP
124
3
HOH
HOH
305
A
TIP
126
3
HOH
HOH
306
A
TIP
127
3
HOH
HOH
307
A
TIP
128
3
HOH
HOH
308
A
TIP
129
3
HOH
HOH
309
A
TIP
130
3
HOH
HOH
310
A
TIP
131
3
HOH
HOH
311
A
TIP
133
3
HOH
HOH
312
A
TIP
134
3
HOH
HOH
313
A
TIP
136
3
HOH
HOH
314
A
TIP
137
3
HOH
HOH
315
A
TIP
139
3
HOH
HOH
316
A
TIP
140
3
HOH
HOH
317
A
TIP
141
3
HOH
HOH
318
A
TIP
143
3
HOH
HOH
319
A
TIP
144
3
HOH
HOH
320
A
TIP
146
3
HOH
HOH
321
A
TIP
147
3
HOH
HOH
322
A
TIP
148
3
HOH
HOH
323
A
TIP
149
3
HOH
HOH
324
A
TIP
150
3
HOH
HOH
325
A
TIP
151
3
HOH
HOH
326
A
TIP
152
3
HOH
HOH
327
A
TIP
155
3
HOH
HOH
328
A
TIP
156
3
HOH
HOH
329
A
TIP
158
3
HOH
HOH
330
A
TIP
159
3
HOH
HOH
331
A
TIP
160
3
HOH
HOH
332
A
TIP
161
3
HOH
HOH
333
A
TIP
162
3
HOH
HOH
334
A
TIP
163
3
HOH
HOH
335
A
TIP
164
3
HOH
HOH
336
A
TIP
165
3
HOH
HOH
337
A
TIP
166
3
HOH
HOH
338
A
TIP
167
3
HOH
HOH
339
A
TIP
168
3
HOH
HOH
340
A
TIP
169
3
HOH
HOH
341
A
TIP
171
3
HOH
HOH
342
A
TIP
172
3
HOH
HOH
343
A
TIP
173
3
HOH
HOH
344
A
TIP
174
3
HOH
HOH
345
A
TIP
175
3
HOH
HOH
346
A
TIP
176
3
HOH
HOH
347
A
TIP
177
3
HOH
HOH
348
A
TIP
178
3
HOH
HOH
349
A
TIP
179
3
HOH
HOH
350
A
TIP
181
3
HOH
HOH
351
A
TIP
182
3
HOH
HOH
352
A
TIP
183
3
HOH
HOH
353
A
TIP
184
3
HOH
HOH
354
A
TIP
185
3
HOH
HOH
355
A
TIP
186
3
HOH
HOH
356
A
TIP
187
3
HOH
HOH
357
A
TIP
188
3
HOH
HOH
358
A
TIP
189
3
HOH
HOH
359
A
TIP
190
3
HOH
HOH
360
A
TIP
191
3
HOH
HOH
361
A
TIP
192
3
HOH
HOH
362
A
TIP
193
3
HOH
HOH
363
A
TIP
194
3
HOH
HOH
364
A
TIP
195
3
HOH
HOH
365
A
n
1
201
B
T
202
n
2
DT
202
B
A
203
n
3
DA
203
B
G
204
n
4
DG
204
B
G
205
n
5
DG
205
B
G
206
n
6
DG
206
B
T
207
n
7
DT
207
B
T
208
n
8
DT
208
B
A
209
n
9
DA
209
B
2AP
210
n
10
2PR
210
B
G
211
n
11
DG
211
B
G
212
n
12
DG
212
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
LYS
8
n
8
LYS
8
A
GLU
9
n
9
GLU
9
A
PRO
10
n
10
PRO
10
A
GLU
11
n
11
GLU
11
A
GLN
12
n
12
GLN
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
LYS
15
n
15
LYS
15
A
LEU
16
n
16
LEU
16
A
PHE
17
n
17
PHE
17
A
ILE
18
n
18
ILE
18
A
GLY
19
n
19
GLY
19
A
GLY
20
n
20
GLY
20
A
LEU
21
n
21
LEU
21
A
SER
22
n
22
SER
22
A
PHE
23
n
23
PHE
23
A
GLU
24
n
24
GLU
24
A
THR
25
n
25
THR
25
A
THR
26
n
26
THR
26
A
ASP
27
n
27
ASP
27
A
GLU
28
n
28
GLU
28
A
SER
29
n
29
SER
29
A
LEU
30
n
30
LEU
30
A
ARG
31
n
31
ARG
31
A
SER
32
n
32
SER
32
A
HIS
33
n
33
HIS
33
A
PHE
34
n
34
PHE
34
A
GLU
35
n
35
GLU
35
A
GLN
36
n
36
GLN
36
A
TRP
37
n
37
TRP
37
A
GLY
38
n
38
GLY
38
A
THR
39
n
39
THR
39
A
LEU
40
n
40
LEU
40
A
THR
41
n
41
THR
41
A
ASP
42
n
42
ASP
42
A
CYS
43
n
43
CYS
43
A
VAL
44
n
44
VAL
44
A
VAL
45
n
45
VAL
45
A
MET
46
n
46
MET
46
A
ARG
47
n
47
ARG
47
A
ASP
48
n
48
ASP
48
A
PRO
49
n
49
PRO
49
A
ASN
50
n
50
ASN
50
A
THR
51
n
51
THR
51
A
LYS
52
n
52
LYS
52
A
ARG
53
n
53
ARG
53
A
SER
54
n
54
SER
54
A
ARG
55
n
55
ARG
55
A
GLY
56
n
56
GLY
56
A
PHE
57
n
57
PHE
57
A
GLY
58
n
58
GLY
58
A
PHE
59
n
59
PHE
59
A
VAL
60
n
60
VAL
60
A
THR
61
n
61
THR
61
A
TYR
62
n
62
TYR
62
A
ALA
63
n
63
ALA
63
A
THR
64
n
64
THR
64
A
VAL
65
n
65
VAL
65
A
GLU
66
n
66
GLU
66
A
GLU
67
n
67
GLU
67
A
VAL
68
n
68
VAL
68
A
ASP
69
n
69
ASP
69
A
ALA
70
n
70
ALA
70
A
ALA
71
n
71
ALA
71
A
MET
72
n
72
MET
72
A
ASN
73
n
73
ASN
73
A
ALA
74
n
74
ALA
74
A
ARG
75
n
75
ARG
75
A
PRO
76
n
76
PRO
76
A
HIS
77
n
77
HIS
77
A
LYS
78
n
78
LYS
78
A
VAL
79
n
79
VAL
79
A
ASP
80
n
80
ASP
80
A
GLY
81
n
81
GLY
81
A
ARG
82
n
82
ARG
82
A
VAL
83
n
83
VAL
83
A
VAL
84
n
84
VAL
84
A
GLU
85
n
85
GLU
85
A
PRO
86
n
86
PRO
86
A
LYS
87
n
87
LYS
87
A
ARG
88
n
88
ARG
88
A
ALA
89
n
89
ALA
89
A
VAL
90
n
90
VAL
90
A
SER
91
n
91
SER
91
A
ARG
92
n
92
ARG
92
A
GLU
93
n
93
GLU
93
A
ASP
94
n
94
ASP
94
A
SER
95
n
95
SER
95
A
GLN
96
n
96
GLN
96
A
ARG
97
n
97
ARG
97
A
PRO
98
n
98
PRO
98
A
GLY
99
n
99
GLY
99
A
ALA
100
n
100
ALA
100
A
HIS
101
n
101
HIS
101
A
LEU
102
n
102
LEU
102
A
THR
103
n
103
THR
103
A
VAL
104
n
104
VAL
104
A
LYS
105
n
105
LYS
105
A
LYS
106
n
106
LYS
106
A
ILE
107
n
107
ILE
107
A
PHE
108
n
108
PHE
108
A
VAL
109
n
109
VAL
109
A
GLY
110
n
110
GLY
110
A
GLY
111
n
111
GLY
111
A
ILE
112
n
112
ILE
112
A
LYS
113
n
113
LYS
113
A
GLU
114
n
114
GLU
114
A
ASP
115
n
115
ASP
115
A
THR
116
n
116
THR
116
A
GLU
117
n
117
GLU
117
A
GLU
118
n
118
GLU
118
A
HIS
119
n
119
HIS
119
A
HIS
120
n
120
HIS
120
A
LEU
121
n
121
LEU
121
A
ARG
122
n
122
ARG
122
A
ASP
123
n
123
ASP
123
A
TYR
124
n
124
TYR
124
A
PHE
125
n
125
PHE
125
A
GLU
126
n
126
GLU
126
A
GLN
127
n
127
GLN
127
A
TYR
128
n
128
TYR
128
A
GLY
129
n
129
GLY
129
A
LYS
130
n
130
LYS
130
A
ILE
131
n
131
ILE
131
A
GLU
132
n
132
GLU
132
A
VAL
133
n
133
VAL
133
A
ILE
134
n
134
ILE
134
A
GLU
135
n
135
GLU
135
A
ILE
136
n
136
ILE
136
A
MET
137
n
137
MET
137
A
THR
138
n
138
THR
138
A
ASP
139
n
139
ASP
139
A
ARG
140
n
140
ARG
140
A
GLY
141
n
141
GLY
141
A
SER
142
n
142
SER
142
A
GLY
143
n
143
GLY
143
A
LYS
144
n
144
LYS
144
A
LYS
145
n
145
LYS
145
A
ARG
146
n
146
ARG
146
A
GLY
147
n
147
GLY
147
A
PHE
148
n
148
PHE
148
A
ALA
149
n
149
ALA
149
A
PHE
150
n
150
PHE
150
A
VAL
151
n
151
VAL
151
A
THR
152
n
152
THR
152
A
PHE
153
n
153
PHE
153
A
ASP
154
n
154
ASP
154
A
ASP
155
n
155
ASP
155
A
HIS
156
n
156
HIS
156
A
ASP
157
n
157
ASP
157
A
SER
158
n
158
SER
158
A
VAL
159
n
159
VAL
159
A
ASP
160
n
160
ASP
160
A
LYS
161
n
161
LYS
161
A
ILE
162
n
162
ILE
162
A
VAL
163
n
163
VAL
163
A
ILE
164
n
164
ILE
164
A
GLN
165
n
165
GLN
165
A
LYS
166
n
166
LYS
166
A
TYR
167
n
167
TYR
167
A
HIS
168
n
168
HIS
168
A
THR
169
n
169
THR
169
A
VAL
170
n
170
VAL
170
A
ASN
171
n
171
ASN
171
A
GLY
172
n
172
GLY
172
A
HIS
173
n
173
HIS
173
A
ASN
174
n
174
ASN
174
A
CYS
175
n
175
CYS
175
A
GLU
176
n
176
GLU
176
A
VAL
177
n
177
VAL
177
A
ARG
178
n
178
ARG
178
A
LYS
179
n
179
LYS
179
A
ALA
180
n
180
ALA
180
A
LEU
181
n
181
LEU
181
A
SER
182
n
182
SER
182
A
LYS
183
n
183
LYS
183
A
GLN
184
n
184
GLN
184
A
GLU
185
n
185
GLU
185
A
MET
186
n
186
MET
186
A
ALA
187
n
187
ALA
187
A
SER
188
n
188
SER
188
A
ALA
189
n
189
ALA
189
A
SER
190
n
190
SER
190
A
n
191
191
A
n
192
192
A
n
193
193
A
n
194
194
A
n
195
195
A
n
196
196
A
author_defined_assembly
2
dimeric
B
2PR
210
A
2PR
10
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
MET
46
B
N
MET
46
A
O
ARG
55
B
O
ARG
55
A
O
VAL
60
B
O
VAL
60
A
N
LEU
16
B
N
LEU
16
A
N
PHE
17
B
N
PHE
17
A
O
LYS
87
B
O
LYS
87
A
O
ARG
82
B
O
ARG
82
A
N
VAL
79
B
N
VAL
79
A
N
GLU
132
B
N
GLU
132
A
O
THR
152
B
O
THR
152
A
O
ALA
149
B
O
ALA
149
A
N
VAL
109
B
N
VAL
109
A
N
PHE
108
B
N
PHE
108
A
O
ARG
178
B
O
ARG
178
A
N
VAL
170
B
N
VAL
170
A
O
HIS
173
B
O
HIS
173
1
B
P
DT
202
A
P
DT
2
1
Y
1
B
OP1
DT
202
A
OP1
DT
2
1
Y
1
B
OP2
DT
202
A
OP2
DT
2
1
Y
1
B
DT
201
A
DT
1
1
Y
1
A
MET
1
B
MET
1
1
Y
1
A
SER
2
B
SER
2
1
Y
1
A
LYS
3
B
LYS
3
1
Y
1
A
SER
4
B
SER
4
1
Y
1
A
GLU
5
B
GLU
5
1
Y
1
A
SER
6
B
SER
6
1
Y
1
A
PRO
7
B
PRO
7
1
Y
1
A
SER
191
B
SER
191
1
Y
1
A
SER
192
B
SER
192
1
Y
1
A
GLN
193
B
GLN
193
1
Y
1
A
ARG
194
B
ARG
194
1
Y
1
A
GLY
195
B
GLY
195
1
Y
1
A
ARG
196
B
ARG
196
1
Y
1
A
ASN
50
-92.87
-64.42
1
A
LYS
52
65.77
-2.11
PROTEIN_REP.PARAM
PROTEIN.TOP
120803_1.PARAM
120803_1.TOP
WATER_REP.PARAM
WATER.TOP
26.8
4.35
0.00
0.00
4.35
0.00
-8.69
0.281
0.009
0.237
0.237
0.237
1.90
19.76
936
18967
18967
4.9
98.8
RANDOM
338734.41
0.000000
1
RESTRAINED
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 2UP1
Engh & Huber
FLAT MODEL
32.6111
0.355607
0.32
0.26
20.00
0.19
0.18
1.90
19.76
195
1891
0
230
1466
0.005
1.2
23.0
1.81
1.31
1.50
2.00
2.00
1.92
2.00
2.87
2.50
0.377
0.044
0.332
1.97
75
1671
10
4.3
93.2
23.6
1.9
20
1U1P
19189
18967
0.0
0.0
0.056
0.056
1
7.8
2.2
98.8
0.261
1.88
1.98
1.8
3817
1.8
74.6
refinement
CNS
1.0
data reduction
CrystalClear
(MSC/RIGAKU)
data scaling
d*TREK
phasing
CNS
Crystal Structure of UP1 Complexed With d(TTAGGGTTA 2PR GG); A Human Telomeric Repeat Containing 2-aminopurine
1
N
N
2
N
N
3
N
N
3
N
N
A
PRO
10
B
PRO
10
HELX_P
A
LEU
13
B
LEU
13
5
1
4
A
THR
26
B
THR
26
HELX_P
A
GLU
35
B
GLU
35
1
2
10
A
GLN
36
B
GLN
36
HELX_P
A
GLY
38
B
GLY
38
5
3
3
A
THR
64
B
THR
64
HELX_P
A
ALA
74
B
ALA
74
1
4
11
A
GLU
93
B
GLU
93
HELX_P
A
ARG
97
B
ARG
97
5
5
5
A
GLU
117
B
GLU
117
HELX_P
A
GLU
126
B
GLU
126
1
6
10
A
GLN
127
B
GLN
127
HELX_P
A
GLY
129
B
GLY
129
5
7
3
A
ASP
155
B
ASP
155
HELX_P
A
ILE
164
B
ILE
164
1
8
10
A
SER
182
B
SER
182
HELX_P
A
SER
190
B
SER
190
1
9
9
covale
1.612
both
B
DA
209
A
O3'
DA
9
1_555
B
2PR
210
A
P
2PR
10
1_555
covale
1.606
both
B
2PR
210
A
O3'
2PR
10
1_555
B
DG
211
A
P
DG
11
1_555
TRANSPORT PROTEIN/DNA
protein-DNA complex, UP1, human telomeric repeat, hTR, TR2-G(10)2PR, RRM, RNA Recognition Motif, 2PR, 2-aminopurine, hnRNP A1, TRANSPORT PROTEIN-DNA COMPLEX
A
ARG
75
B
ARG
75
1
A
PRO
76
B
PRO
76
0.07
ROA1_HUMAN
UNP
2
0
P09651
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD
GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD
KIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGR
1U1P
PDB
1
1U1P
0
195
1U1P
1
196
P09651
A
1
1
196
201
212
1U1P
201
212
1U1P
B
2
1
12
5
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
40
B
LEU
40
A
ARG
47
B
ARG
47
A
SER
54
B
SER
54
A
TYR
62
B
TYR
62
A
LYS
15
B
LYS
15
A
GLY
19
B
GLY
19
A
ARG
82
B
ARG
82
A
ARG
88
B
ARG
88
A
HIS
77
B
HIS
77
A
VAL
79
B
VAL
79
A
ILE
131
B
ILE
131
A
THR
138
B
THR
138
A
LYS
145
B
LYS
145
A
PHE
153
B
PHE
153
A
LYS
106
B
LYS
106
A
GLY
110
B
GLY
110
A
GLU
176
B
GLU
176
A
LYS
179
B
LYS
179
A
THR
169
B
THR
169
A
VAL
170
B
VAL
170
A
HIS
173
B
HIS
173
A
ASN
174
B
ASN
174
96
P 43 21 2