1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Feng, W. Long, J.-F. Chan, L.-N. He, C. Fu, A. Xia, J. Ip, N.Y. Zhang, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Mol.Biol. 1545-9993 12 722 728 10.1038/nsmb958 16007100 Autoinhibition of X11/Mint scaffold proteins revealed by the closed conformation of the PDZ tandem 2005 10.2210/pdb1u39/pdb pdb_00001u39 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 8720.254 amyloid beta A4 precursor protein-binding, family A, member 1 PDZ2 domain 1 man polymer X11alpha/Mint1, phosphotyrosine-binding/-interacting domain (PTB)-bearing protein, neuronal munc18-1-interacting protein 1, neuron-specific X11 protein, adaptor protein X11alpha no no PPVTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA PPVTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli plasmid pET32a database_2 pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2005-07-26 1 1 2007-10-21 1 2 2011-07-13 1 3 2022-03-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession The same protein, PDZ1 domain, 20 structures The same protein complex with C-peptide, 20 structures The same protein, PDZ12C domain, minimized average structure RCSB Y PDBJ 2004-07-21 REL REL structures with the lowest energy 200 20 3D_15N-separated_NOESY HNCO, HNCACB, CBCA(CO)NH 3D_13C-separated_NOESY 100mM potassium phosphate 6.5 1 atm 303 K torsion angle dynamics 1 minimized average structure 1.0mM uniformly 15N labelled PDZ2 in 90% H2O, 10% D2O; 100mM potassium phosphate 90% H2O/10% D2O 1.0mM uniformly 15N/13C labelled PDZ2 in 90% H2O, 10% D2O; 100mM potassium phosphate 90% H2O/10% D2O 1.0mM uniformly 15N/13C labelled PDZ2 in 99.9% D2O; 100mM potassium phosphate 99.9% D2O Brunger, A.T. structure solution CNS 1.1 Brunger, A.T. refinement CNS 1.1 750 Varian INOVA PRO 79 n 1 PRO 79 A PRO 80 n 2 PRO 80 A VAL 81 n 3 VAL 81 A THR 82 n 4 THR 82 A THR 83 n 5 THR 83 A VAL 84 n 6 VAL 84 A LEU 85 n 7 LEU 85 A ILE 86 n 8 ILE 86 A ARG 87 n 9 ARG 87 A ARG 88 n 10 ARG 88 A PRO 89 n 11 PRO 89 A ASP 90 n 12 ASP 90 A LEU 91 n 13 LEU 91 A ARG 92 n 14 ARG 92 A TYR 93 n 15 TYR 93 A GLN 94 n 16 GLN 94 A LEU 95 n 17 LEU 95 A GLY 96 n 18 GLY 96 A PHE 97 n 19 PHE 97 A SER 98 n 20 SER 98 A VAL 99 n 21 VAL 99 A GLN 100 n 22 GLN 100 A ASN 101 n 23 ASN 101 A GLY 102 n 24 GLY 102 A ILE 103 n 25 ILE 103 A ILE 104 n 26 ILE 104 A CYS 105 n 27 CYS 105 A SER 106 n 28 SER 106 A LEU 107 n 29 LEU 107 A MET 108 n 30 MET 108 A ARG 109 n 31 ARG 109 A GLY 110 n 32 GLY 110 A GLY 111 n 33 GLY 111 A ILE 112 n 34 ILE 112 A ALA 113 n 35 ALA 113 A GLU 114 n 36 GLU 114 A ARG 115 n 37 ARG 115 A GLY 116 n 38 GLY 116 A GLY 117 n 39 GLY 117 A VAL 118 n 40 VAL 118 A ARG 119 n 41 ARG 119 A VAL 120 n 42 VAL 120 A GLY 121 n 43 GLY 121 A HIS 122 n 44 HIS 122 A ARG 123 n 45 ARG 123 A ILE 124 n 46 ILE 124 A ILE 125 n 47 ILE 125 A GLU 126 n 48 GLU 126 A ILE 127 n 49 ILE 127 A ASN 128 n 50 ASN 128 A GLY 129 n 51 GLY 129 A GLN 130 n 52 GLN 130 A SER 131 n 53 SER 131 A VAL 132 n 54 VAL 132 A VAL 133 n 55 VAL 133 A ALA 134 n 56 ALA 134 A THR 135 n 57 THR 135 A PRO 136 n 58 PRO 136 A HIS 137 n 59 HIS 137 A GLU 138 n 60 GLU 138 A LYS 139 n 61 LYS 139 A ILE 140 n 62 ILE 140 A VAL 141 n 63 VAL 141 A HIS 142 n 64 HIS 142 A ILE 143 n 65 ILE 143 A LEU 144 n 66 LEU 144 A SER 145 n 67 SER 145 A ASN 146 n 68 ASN 146 A ALA 147 n 69 ALA 147 A VAL 148 n 70 VAL 148 A GLY 149 n 71 GLY 149 A GLU 150 n 72 GLU 150 A ILE 151 n 73 ILE 151 A HIS 152 n 74 HIS 152 A MET 153 n 75 MET 153 A LYS 154 n 76 LYS 154 A THR 155 n 77 THR 155 A MET 156 n 78 MET 156 A PRO 157 n 79 PRO 157 A ALA 158 n 80 ALA 158 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 86 A N ILE 8 A O ILE 151 A O ILE 73 A O LYS 154 A O LYS 76 A N ILE 125 A N ILE 47 A N ILE 127 A N ILE 49 A O GLN 130 A O GLN 52 A N GLN 100 A N GLN 22 A O ILE 103 A O ILE 25 1 A ASN 101 65.36 -68.51 1 A CYS 105 -109.59 -71.68 1 A ARG 109 -63.58 82.74 1 A VAL 118 -37.59 114.92 1 A VAL 120 -48.11 101.76 1 A ILE 125 -151.54 -84.51 1 A ASN 128 59.84 18.64 1 A ALA 147 -103.62 79.21 2 A LEU 91 -96.19 30.87 2 A CYS 105 -108.00 -65.62 2 A ARG 109 -67.97 71.92 2 A VAL 118 -29.58 -64.26 2 A ARG 119 61.71 178.70 2 A ILE 125 -137.18 -84.46 3 A ASN 101 64.34 -68.19 3 A CYS 105 -106.46 -79.48 3 A LEU 107 -174.16 101.86 3 A ARG 109 -66.03 78.20 3 A VAL 118 -15.11 -83.31 3 A ARG 119 62.56 143.19 3 A ILE 125 -157.79 -86.66 3 A PRO 136 -47.92 164.09 4 A PHE 97 -175.55 145.14 4 A CYS 105 -94.97 -67.35 4 A ARG 109 -93.40 44.14 4 A VAL 118 -34.13 148.80 4 A ILE 125 -128.29 -84.46 4 A ALA 147 -118.06 52.59 4 A VAL 148 -53.50 -178.48 5 A PRO 80 -52.05 88.87 5 A ASP 90 -127.50 -169.17 5 A CYS 105 -94.29 -84.28 5 A ARG 109 -63.89 80.79 5 A VAL 118 -15.72 -81.98 5 A ARG 119 63.84 129.05 5 A ILE 125 -146.07 -84.50 5 A PRO 136 -49.72 156.97 6 A ASN 101 64.69 -70.66 6 A ARG 109 -55.21 91.00 6 A ILE 125 -147.14 -83.02 6 A PRO 157 -50.92 109.38 7 A LEU 95 -96.98 -61.35 7 A PHE 97 -176.68 -171.96 7 A ASN 101 65.18 -64.64 7 A CYS 105 -105.42 -77.73 7 A VAL 118 -31.75 145.72 7 A ILE 125 -149.38 -82.99 7 A PRO 136 -42.77 164.20 7 A ALA 147 -116.98 58.19 7 A VAL 148 -53.28 173.70 8 A PRO 80 -66.64 62.57 8 A ASN 101 64.94 -67.16 8 A CYS 105 -97.81 -80.11 8 A ARG 109 -90.87 47.52 8 A VAL 118 -31.87 116.56 8 A VAL 120 -46.99 108.42 8 A ILE 125 -141.42 -84.79 8 A ALA 147 -116.82 56.39 8 A VAL 148 -54.21 -177.96 9 A ASN 101 63.89 -73.94 9 A CYS 105 -105.59 -67.54 9 A ARG 109 -68.70 72.21 9 A VAL 118 -38.50 129.47 9 A ILE 125 -154.79 -85.04 9 A PRO 136 -48.27 164.16 9 A VAL 148 44.44 -173.63 10 A ASN 101 56.59 18.97 10 A CYS 105 -108.89 -75.39 10 A ARG 109 -91.96 45.53 10 A VAL 118 -35.49 153.19 10 A ILE 124 -46.16 156.70 10 A ILE 125 -153.89 -86.06 10 A ASN 128 48.18 26.51 10 A ALA 147 -117.62 59.52 10 A VAL 148 -54.74 175.70 11 A CYS 105 -106.15 -72.18 11 A ARG 109 -93.25 44.47 11 A VAL 118 -24.91 136.87 11 A VAL 120 -57.11 100.21 11 A ILE 125 -148.59 -84.71 11 A VAL 148 44.86 -171.38 12 A GLN 94 -66.42 -177.83 12 A ASN 101 58.26 18.91 12 A SER 106 -178.19 141.24 12 A ARG 109 -58.81 86.49 12 A VAL 118 -31.25 102.04 12 A VAL 120 -53.76 99.99 12 A ILE 124 -48.09 157.85 12 A ILE 125 -150.73 -83.37 12 A VAL 148 45.96 -174.68 13 A CYS 105 -116.82 -81.10 13 A ARG 109 -66.13 76.71 13 A VAL 118 -26.43 123.70 13 A VAL 120 -52.20 93.23 13 A ILE 125 -147.45 -84.31 14 A PRO 80 -69.76 85.77 14 A ASP 90 -173.07 -169.38 14 A CYS 105 -126.51 -80.64 14 A VAL 118 -37.95 135.90 14 A VAL 120 -57.11 89.45 14 A ILE 125 -150.77 -85.66 14 A VAL 148 57.01 164.61 15 A ARG 88 -164.57 97.81 15 A ASN 101 57.78 18.28 15 A CYS 105 -105.00 -77.98 15 A MET 108 -68.13 98.26 15 A VAL 118 -34.27 146.36 15 A ILE 124 -49.98 158.21 15 A ILE 125 -148.99 -82.70 15 A VAL 148 44.56 -172.67 16 A LEU 95 -93.61 -67.62 16 A PHE 97 179.96 177.41 16 A LEU 107 -167.25 116.46 16 A VAL 118 -30.76 147.24 16 A VAL 120 -62.00 95.75 16 A HIS 122 -125.32 -165.98 16 A ILE 125 -150.31 -84.48 16 A ALA 147 -117.89 54.88 16 A VAL 148 -50.78 177.61 17 A TYR 93 -60.30 -177.44 17 A ASN 101 57.11 18.74 17 A CYS 105 -106.44 -69.89 17 A ARG 109 -65.05 78.88 17 A VAL 118 -30.34 144.58 17 A VAL 120 -56.05 90.79 17 A ILE 125 -137.97 -82.84 17 A ALA 147 -119.26 63.45 17 A VAL 148 -60.11 -157.28 18 A ASN 101 58.25 17.25 18 A CYS 105 -84.62 -75.62 18 A ARG 109 -67.18 76.14 18 A VAL 118 -29.75 -71.46 18 A ARG 119 64.32 136.12 18 A ILE 125 -137.11 -84.80 18 A ASN 128 57.82 17.87 18 A PRO 136 -49.65 164.04 18 A ALA 147 -118.65 55.26 18 A VAL 148 -55.84 174.89 19 A TYR 93 -56.69 174.72 19 A ASN 101 59.67 18.04 19 A LEU 107 -162.26 116.54 19 A ARG 109 -65.44 79.50 19 A VAL 118 -40.46 108.21 19 A VAL 120 -54.06 92.61 19 A ILE 125 -136.65 -83.98 20 A PRO 80 -51.73 90.03 20 A LEU 95 -91.42 -66.67 20 A CYS 105 -100.52 -78.79 20 A VAL 118 -34.70 128.07 20 A ILE 124 -49.71 159.14 20 A ILE 125 -148.79 -82.23 minimized average Auto-inhibition Mechanism of X11s/Mints Family Scaffold Proteins Revealed by the Closed Conformation of the Tandem PDZ Domains 1 N N A ILE 112 A ILE 34 HELX_P A GLY 117 A GLY 39 1 1 6 A VAL 133 A VAL 55 HELX_P A THR 135 A THR 57 5 2 3 A PRO 136 A PRO 58 HELX_P A ASN 146 A ASN 68 1 3 11 PROTEIN TRANSPORT X11s/Mints, PDZ domain, scaffold protein, protein trafficking, PROTEIN TRANSPORT APBA1_HUMAN UNP 1 743 Q02410 PPVTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 743 822 1U39 79 158 Q02410 A 1 1 80 4 2 anti-parallel anti-parallel anti-parallel anti-parallel A THR 82 A THR 4 A ARG 87 A ARG 9 A GLU 150 A GLU 72 A MET 156 A MET 78 A ARG 123 A ARG 45 A ILE 127 A ILE 49 A GLN 130 A GLN 52 A SER 131 A SER 53 A PHE 97 A PHE 19 A GLN 100 A GLN 22 A ILE 103 A ILE 25 A LEU 107 A LEU 29