0.022222
0.000000
0.000000
0.000000
0.009234
0.000000
0.000000
0.000000
0.004031
0.00000
0.00000
0.00000
Shen, B.W.
Landthaler, M.
Shub, D.A.
Stoddard, B.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
45.000
108.300
248.100
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mn 2
54.938
MANGANESE (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
Sr 2
87.620
STRONTIUM ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
O
N
249
N
N
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
O
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
N
C
N
282
N
C
N
283
N
O
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
Y
295
N
C
Y
296
N
N
Y
297
N
C
Y
298
N
C
Y
299
N
N
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
S
C
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
N
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
C
N
389
N
S
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
MN
N
404
N
N
N
405
S
C
N
406
N
C
N
407
N
O
N
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
N
432
N
C
N
433
N
C
N
434
N
O
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
N
C
N
449
N
O
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
SR
N
459
N
N
N
460
S
C
N
461
N
C
N
462
N
O
N
463
R
C
N
464
N
O
N
465
N
C
N
466
N
O
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
N
N
477
S
C
N
478
N
C
N
479
N
O
N
480
N
C
Y
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
N
Y
485
N
C
Y
486
N
C
Y
487
N
C
Y
488
N
C
Y
489
N
C
N
490
N
O
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
C
N
504
N
C
N
505
N
C
N
506
N
C
N
507
N
N
N
508
N
O
N
509
N
O
N
510
N
O
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
N
N
524
S
C
N
525
N
C
N
526
N
O
N
527
N
C
Y
528
N
C
Y
529
N
C
Y
530
N
C
Y
531
N
C
Y
532
N
C
Y
533
N
C
N
534
N
O
N
535
N
O
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
N
N
548
S
C
N
549
N
C
N
550
N
O
N
551
N
C
N
552
N
C
N
553
N
C
N
554
N
O
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
sing
Y
299
N
doub
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
doub
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
doub
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
Y
475
N
doub
Y
476
N
sing
Y
477
N
sing
N
478
N
sing
Y
479
N
doub
Y
480
N
sing
Y
481
N
sing
N
482
N
sing
Y
483
N
sing
Y
484
N
doub
N
485
N
sing
Y
486
N
doub
N
487
N
sing
Y
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
doub
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
Y
522
N
doub
Y
523
N
sing
Y
524
N
sing
N
525
N
sing
Y
526
N
doub
N
527
N
sing
Y
528
N
doub
N
529
N
sing
Y
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
doub
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
342
43
56
10.1016/j.jmb.2004.07.032
15313606
DNA Binding and Cleavage by the HNH Homing Endonuclease I-HmuI.
2004
10.2210/pdb1u3e/pdb
pdb_00001u3e
100
1
100
1
toroidal focusing mirror
CCD
2003-12-10
ADSC QUANTUM 315
mirrors
CCD
2003-12-10
ADSC QUANTUM 210
single crystal Si(111), cylindrically bent
SINGLE WAVELENGTH
M
x-ray
1
double crystal Si(220)
SINGLE WAVELENGTH
M
x-ray
1
0.9796
1.0
1.00
1.0
5.0.2
ALS
0.9796
SYNCHROTRON
ALS BEAMLINE 5.0.2
5.0.1
ALS
1.00
SYNCHROTRON
ALS BEAMLINE 5.0.1
11039.131
36-MER
1
syn
polymer
6494.194
5'-D(*CP*TP*TP*AP*CP*GP*TP*GP*GP*GP*AP*AP*TP*TP*GP*CP*TP*GP*AP*GP*C)-3'
1
syn
polymer
4574.982
5'-D(P*GP*TP*TP*AP*GP*GP*CP*TP*CP*AP*TP*TP*AP*CP*T)-3'
1
syn
polymer
19803.684
HNH homing endonuclease
1
man
polymer
87.620
STRONTIUM ION
4
syn
non-polymer
62.068
1,2-ETHANEDIOL
7
syn
non-polymer
54.938
MANGANESE (II) ION
1
syn
non-polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
1
syn
non-polymer
18.015
water
31
nat
water
no
no
(DG)(DT)(DA)(DA)(DT)(DG)(DA)(DG)(DC)(DC)(DT)(DA)(DA)(DC)(DG)(DC)(DT)(DC)(DA)(DG)
(DC)(DA)(DA)(DT)(DT)(DC)(DC)(DC)(DA)(DC)(DG)(DT)(DA)(DA)(DG)(DA)
GTAATGAGCCTAACGCTCAGCAATTCCCACGTAAGA
A
polydeoxyribonucleotide
no
no
(DC)(DT)(DT)(DA)(DC)(DG)(DT)(DG)(DG)(DG)(DA)(DA)(DT)(DT)(DG)(DC)(DT)(DG)(DA)(DG)
(DC)
CTTACGTGGGAATTGCTGAGC
B
polydeoxyribonucleotide
no
no
(DG)(DT)(DT)(DA)(DG)(DG)(DC)(DT)(DC)(DA)(DT)(DT)(DA)(DC)(DT)
GTTAGGCTCATTACT
C
polydeoxyribonucleotide
no
no
MEWKDIKGYEGHYQVSNTGEVYSIKSGKTLKHQIPKDGYHRIGLFKGGKGKTFQVHRLVAIHFCEGYEEGLVVDHKDGNK
DNNLSTNLRWVTQKINVENQMSRGTLNVSKAQQIAKIKNQKPIIVISPDGIEKEYPSTKCACEELGLTRGKVTDVLKGHR
IHHKGYTFRYKLNG
MEWKDIKGYEGHYQVSNTGEVYSIKSGKTLKHQIPKDGYHRIGLFKGGKGKTFQVHRLVAIHFCEGYEEGLVVDHKDGNK
DNNLSTNLRWVTQKINVENQMSRGTLNVSKAQQIAKIKNQKPIIVISPDGIEKEYPSTKCACEELGLTRGKVTDVLKGHR
IHHKGYTFRYKLNG
M
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
SPO1-like viruses
Escherichia
sample
bacteriophage SP01
10685
Bacillus phage SPO1
562
Escherichia coli
BL21(DE3)codon+
plasmid
pKYB1
2
3.53
60
Hanging drop vapor diffusion
8.75
PEG600, pH 8.75, Hanging drop vapor diffusion, temperature 298K
298
PEG600
1
H2O
1
PEG600
2
PEG600
2
63.640
1
19
A
2
C
36
-3.084
A_DG2:DC36_C
1
-8.198
-0.073
1.623
0.303
13.404
1
20
A
4
C
34
8.896
A_DA4:DT34_C
2
-2.556
-0.091
-0.058
-0.081
9.748
1
20
A
5
C
33
0.572
A_DA5:DT33_C
3
-31.709
0.129
-0.083
0.028
13.200
1
20
A
6
C
32
7.889
A_DT6:DA32_C
4
-29.624
0.027
-0.415
-0.193
7.490
1
19
A
7
C
31
5.979
A_DG7:DC31_C
5
0.073
-0.318
0.912
-0.034
12.971
1
20
A
8
C
30
-2.334
A_DA8:DT30_C
6
-9.955
0.069
0.863
-0.074
1.422
1
19
A
9
C
29
8.074
A_DG9:DC29_C
7
-16.014
-0.326
-0.680
-0.232
6.723
1
19
A
10
C
28
6.862
A_DC10:DG28_C
8
-13.403
0.102
-0.824
-0.208
-12.102
1
19
A
11
C
27
2.053
A_DC11:DG27_C
9
1.077
-0.226
-0.586
-0.131
10.137
1
20
A
12
C
26
-1.215
A_DT12:DA26_C
10
-7.800
-0.139
-0.640
-0.043
7.521
1
20
A
13
C
25
-0.231
A_DA13:DT25_C
11
8.943
-0.187
-0.280
-0.004
23.359
1
20
A
14
C
24
11.544
A_DA14:DT24_C
12
-0.615
0.050
-0.250
-0.033
38.942
1
19
A
15
C
23
4.514
A_DC15:DG23_C
13
-17.788
0.322
-0.993
0.188
-3.904
1
19
A
16
B
22
0.014
A_DG16:DC22_B
14
-6.756
0.099
-0.486
-0.144
-6.109
1
19
A
17
B
21
-4.844
A_DC17:DG21_B
15
-1.900
0.048
-0.290
-0.184
4.641
1
20
A
18
B
20
-4.664
A_DT18:DA20_B
16
2.478
-0.101
-0.179
-0.011
18.646
1
19
A
19
B
19
-0.036
A_DC19:DG19_B
17
2.792
0.041
-0.749
-0.049
-14.722
1
20
A
20
B
18
-6.678
A_DA20:DT18_B
18
2.963
0.268
-0.788
-0.159
1.157
1
19
A
21
B
17
-1.824
A_DG21:DC17_B
19
-2.194
-0.028
0.319
0.001
3.482
1
19
A
22
B
16
-1.234
A_DC22:DG16_B
20
-3.000
0.067
0.148
0.009
9.000
1
20
A
23
B
15
-1.296
A_DA23:DT15_B
21
-12.190
-0.063
-0.028
-0.087
4.805
1
20
A
24
B
14
0.364
A_DA24:DT14_B
22
-13.988
0.171
0.132
-0.066
-2.905
1
20
A
25
B
13
0.573
A_DT25:DA13_B
23
-7.923
0.137
-0.002
-0.050
-6.583
1
20
A
26
B
12
-1.839
A_DT26:DA12_B
24
-10.871
0.063
-0.168
-0.020
-0.888
1
19
A
27
B
11
0.583
A_DC27:DG11_B
25
7.929
0.241
-0.617
-0.201
2.687
1
19
A
28
B
10
-6.177
A_DC28:DG10_B
26
-3.941
-0.028
0.379
-0.091
5.425
1
19
A
29
B
9
-3.193
A_DC29:DG9_B
27
-5.670
0.190
-0.181
-0.073
9.047
1
20
A
30
B
8
7.461
A_DA30:DT8_B
28
-5.386
-0.007
-0.163
-0.112
13.263
1
19
A
31
B
7
2.894
A_DC31:DG7_B
29
-11.354
0.198
-0.616
-0.179
6.009
1
19
A
32
B
6
-2.543
A_DG32:DC6_B
30
-5.542
-0.137
0.256
-0.081
6.682
1
20
A
33
B
5
6.890
A_DT33:DA5_B
31
-4.353
1.219
-0.145
-0.354
1.493
A
35
B
3
8.922
A_DA35:DT3_B
32
-22.859
0.802
-0.148
0.395
-19.320
1
19
A
36
B
2
0.615
A_DG36:DC2_B
33
-18.086
-0.099
-0.341
-0.059
3.540
37.026
A
A
4
5
-4.015
C
C
34
33
3.572
-2.548
-1.440
0.112
AA_DA4DA5:DT33DT34_CC
1
0.426
-0.671
36.939
0.548
2.330
3.308
36.180
A
A
5
6
-7.573
C
C
33
32
3.211
-4.681
0.430
-0.756
AA_DA5DT6:DA32DT33_CC
2
4.136
-6.692
35.654
-0.555
-0.108
3.216
38.950
A
A
6
7
0.095
C
C
32
31
3.468
0.062
0.211
0.146
AA_DT6DG7:DC31DA32_CC
3
-12.986
19.827
36.800
0.210
-1.973
3.207
35.299
A
A
7
8
-3.488
C
C
31
30
3.203
-2.114
-0.745
-0.451
AA_DG7DA8:DT30DC31_CC
4
0.784
-1.293
35.229
-0.437
1.343
3.558
33.514
A
A
8
9
14.875
C
C
30
29
3.852
8.404
0.496
-0.737
AA_DA8DG9:DC29DT30_CC
5
8.245
-14.594
31.433
-2.897
0.728
2.699
34.969
A
A
9
10
17.321
C
C
29
28
2.946
10.262
0.056
-0.423
AA_DG9DC10:DG28DC29_CC
6
-1.381
2.330
33.447
-2.072
-0.278
3.482
32.245
A
A
10
11
17.837
C
C
28
27
3.933
9.720
-0.095
-0.826
AA_DC10DC11:DG27DG28_CC
7
-5.030
9.230
30.378
-3.510
-0.875
3.015
31.417
A
A
11
12
-11.177
C
C
27
26
2.969
-6.012
-0.990
-0.193
AA_DC11DT12:DA26DG27_CC
8
-2.267
4.216
30.770
0.686
1.435
3.556
32.706
A
A
12
13
-1.585
C
C
26
25
3.663
-0.882
0.008
-0.891
AA_DT12DA13:DT25DA26_CC
9
-8.769
15.757
31.528
-1.410
-1.720
3.247
28.417
A
A
13
14
-1.157
C
C
25
24
3.241
-0.568
0.810
-1.018
AA_DA13DA14:DT24DT25_CC
10
-0.488
0.994
28.407
-1.943
-1.761
2.589
31.002
A
A
14
15
14.763
C
C
24
23
2.915
7.793
-0.292
-0.752
AA_DA14DC15:DG23DT24_CC
11
3.599
-6.818
29.818
-2.695
1.142
3.363
37.072
A
A
15
16
32.069
C
B
23
22
4.331
19.139
-1.622
-1.248
AA_DC15DG16:DC22DG23_BC
12
-10.659
17.860
30.091
-5.322
0.680
3.386
36.339
A
A
16
17
1.662
B
B
22
21
3.301
1.033
-1.123
-1.088
AA_DG16DC17:DG21DC22_BB
13
-4.789
7.701
36.018
-1.893
1.115
3.211
30.715
A
A
17
18
24.479
B
B
21
20
3.207
12.599
0.196
0.671
AA_DC17DT18:DA20DG21_BB
14
0.816
-1.585
28.057
-1.275
-0.206
3.048
32.108
A
A
18
19
4.767
B
B
20
19
2.960
2.615
0.830
-0.115
AA_DT18DC19:DG19DA20_BB
15
6.746
-12.298
31.303
-0.645
-0.374
4.548
43.065
A
A
19
20
59.972
B
B
19
18
5.074
37.052
-0.105
2.205
AA_DC19DA20:DT18DG19_BB
16
0.832
-1.347
22.328
-4.284
0.307
3.214
36.641
A
A
20
21
8.029
B
B
18
17
2.971
4.935
-1.071
0.638
AA_DA20DG21:DC17DT18_BB
17
-12.660
20.598
34.109
0.350
-0.003
3.395
32.082
A
A
21
22
0.784
B
B
17
16
3.388
0.433
0.271
-0.130
AA_DG21DC22:DG16DC17_BB
18
1.647
-2.982
32.038
-0.316
-0.183
3.159
37.139
A
A
22
23
3.665
B
B
16
15
3.161
2.332
-0.948
0.534
AA_DC22DA23:DT15DG16_BB
19
1.118
-1.757
37.052
0.538
1.633
3.396
36.298
A
A
23
24
-3.290
B
B
15
14
3.392
-2.048
0.503
-0.513
AA_DA23DA24:DT14DT15_BB
20
-1.264
2.031
36.221
-0.526
-0.992
3.400
33.761
A
A
24
25
-0.380
B
B
14
13
3.392
-0.221
0.454
-1.235
AA_DA24DT25:DA13DT14_BB
21
-0.019
0.033
33.760
-2.090
-0.786
3.298
36.777
A
A
25
26
5.363
B
B
13
12
3.342
3.376
-0.194
-0.078
AA_DT25DT26:DA12DA13_BB
22
2.857
-4.538
36.519
-0.592
0.704
3.472
35.215
A
A
26
27
4.270
B
B
12
11
3.298
2.577
1.453
0.724
AA_DT26DC27:DG11DA12_BB
23
3.714
-6.154
34.933
0.798
-1.828
3.802
32.627
A
A
27
28
-5.069
B
B
11
10
3.571
-2.819
-1.708
0.599
AA_DC27DC28:DG10DG11_BB
24
-7.582
13.631
31.635
1.627
1.533
3.130
36.160
A
A
28
29
4.901
B
B
10
9
3.208
3.036
0.606
-1.254
AA_DC28DC29:DG9DG10_BB
25
2.616
-4.223
35.945
-2.436
-0.618
3.261
30.434
A
A
29
30
11.239
B
B
9
8
3.298
5.865
0.065
0.114
AA_DC29DA30:DT8DG9_BB
26
0.063
-0.121
29.877
-0.970
-0.112
3.107
32.195
A
A
30
31
8.528
B
B
8
7
3.244
4.708
-0.348
-0.461
AA_DA30DC31:DG7DT8_BB
27
2.619
-4.744
31.753
-1.652
1.084
3.263
37.245
A
A
31
32
15.976
B
B
7
6
3.355
10.028
-0.213
0.164
AA_DC31DG32:DC6DG7_BB
28
-6.963
11.094
35.255
-1.129
-0.630
3.355
38.390
A
A
32
33
-1.060
B
B
6
5
3.341
-0.697
0.313
-0.276
AA_DG32DT33:DA5DC6_BB
29
1.536
-2.337
38.355
-0.331
-0.280
6.693
73.711
A
A
33
35
-1.215
B
B
5
3
6.693
-1.457
-0.447
-0.543
AA_DT33DA35:DT3DA5_BB
30
1.419
-1.183
73.687
-0.358
0.465
3.615
36.678
A
A
35
36
4.805
B
B
3
2
3.615
3.018
-0.577
-0.269
AA_DA35DG36:DC2DT3_BB
31
-2.833
4.510
36.452
-0.886
0.487
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
Refinement description
1
0
2004-08-31
1
1
2008-04-30
1
2
2011-07-13
1
3
2011-11-16
1
4
2024-02-14
1
5
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
DNA-binding domain of Intron endonuclease I-Tevi with substrate
Intron-encoded endonuclease I-Ppo1 complexed with DNA
(His-Cys box)
Crystal structure of the E9 Dnase domain (non-specific HNH nuclease)
crystal structure of Nuclease-Cole& complexed with Octamer DNA (non-specific HNH nuclease)
COMPOUND
The nick between Chain B and C was created by the enzyme
RCSB
Y
RCSB
2004-07-21
REL
REL
SR
STRONTIUM ION
EDO
1,2-ETHANEDIOL
MN
MANGANESE (II) ION
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HOH
water
pdb from SAD phase and DM with solvent flipping
Other
experimental model
SR
414
5
SR
SR
414
A
SR
415
5
SR
SR
415
A
EGL
401
6
EDO
EDO
401
A
EGL
402
6
EDO
EDO
402
A
EGL
403
6
EDO
EDO
403
B
EGL
397
6
EDO
EDO
397
C
MN
413
7
MN
MN
413
M
SR
417
5
SR
SR
417
M
SR
418
5
SR
SR
418
M
EGL
398
6
EDO
EDO
398
M
EGL
399
6
EDO
EDO
399
M
EGL
400
6
EDO
EDO
400
M
TRS
404
8
TRS
TRS
404
M
HOH
1
9
HOH
HOH
416
A
HOH
2
9
HOH
HOH
417
A
HOH
4
9
HOH
HOH
418
A
HOH
15
9
HOH
HOH
419
A
HOH
21
9
HOH
HOH
420
A
HOH
35
9
HOH
HOH
421
A
HOH
39
9
HOH
HOH
422
A
HOH
40
9
HOH
HOH
423
A
HOH
45
9
HOH
HOH
424
A
HOH
6
9
HOH
HOH
404
B
HOH
9
9
HOH
HOH
405
B
HOH
11
9
HOH
HOH
398
C
HOH
25
9
HOH
HOH
399
C
HOH
29
9
HOH
HOH
400
C
HOH
36
9
HOH
HOH
401
C
HOH
3
9
HOH
HOH
419
M
HOH
5
9
HOH
HOH
420
M
HOH
7
9
HOH
HOH
421
M
HOH
8
9
HOH
HOH
422
M
HOH
10
9
HOH
HOH
423
M
HOH
12
9
HOH
HOH
424
M
HOH
14
9
HOH
HOH
425
M
HOH
17
9
HOH
HOH
426
M
HOH
19
9
HOH
HOH
427
M
HOH
26
9
HOH
HOH
428
M
HOH
28
9
HOH
HOH
429
M
HOH
34
9
HOH
HOH
430
M
HOH
41
9
HOH
HOH
431
M
HOH
42
9
HOH
HOH
432
M
HOH
43
9
HOH
HOH
433
M
HOH
46
9
HOH
HOH
434
M
G
2
n
1
DG
2
A
T
3
n
2
DT
3
A
A
4
n
3
DA
4
A
A
5
n
4
DA
5
A
T
6
n
5
DT
6
A
G
7
n
6
DG
7
A
A
8
n
7
DA
8
A
G
9
n
8
DG
9
A
C
10
n
9
DC
10
A
C
11
n
10
DC
11
A
T
12
n
11
DT
12
A
A
13
n
12
DA
13
A
A
14
n
13
DA
14
A
C
15
n
14
DC
15
A
G
16
n
15
DG
16
A
C
17
n
16
DC
17
A
T
18
n
17
DT
18
A
C
19
n
18
DC
19
A
A
20
n
19
DA
20
A
G
21
n
20
DG
21
A
C
22
n
21
DC
22
A
A
23
n
22
DA
23
A
A
24
n
23
DA
24
A
T
25
n
24
DT
25
A
T
26
n
25
DT
26
A
C
27
n
26
DC
27
A
C
28
n
27
DC
28
A
C
29
n
28
DC
29
A
A
30
n
29
DA
30
A
C
31
n
30
DC
31
A
G
32
n
31
DG
32
A
T
33
n
32
DT
33
A
A
34
n
33
DA
34
A
A
35
n
34
DA
35
A
G
36
n
35
DG
36
A
A
37
n
36
DA
37
A
C
2
n
1
DC
2
B
T
3
n
2
DT
3
B
T
4
n
3
DT
4
B
A
5
n
4
DA
5
B
C
6
n
5
DC
6
B
G
7
n
6
DG
7
B
T
8
n
7
DT
8
B
G
9
n
8
DG
9
B
G
10
n
9
DG
10
B
G
11
n
10
DG
11
B
A
12
n
11
DA
12
B
A
13
n
12
DA
13
B
T
14
n
13
DT
14
B
T
15
n
14
DT
15
B
G
16
n
15
DG
16
B
C
17
n
16
DC
17
B
T
18
n
17
DT
18
B
G
19
n
18
DG
19
B
A
20
n
19
DA
20
B
G
21
n
20
DG
21
B
C
22
n
21
DC
22
B
G
23
n
1
DG
23
C
T
24
n
2
DT
24
C
T
25
n
3
DT
25
C
A
26
n
4
DA
26
C
G
27
n
5
DG
27
C
G
28
n
6
DG
28
C
C
29
n
7
DC
29
C
T
30
n
8
DT
30
C
C
31
n
9
DC
31
C
A
32
n
10
DA
32
C
T
33
n
11
DT
33
C
T
34
n
12
DT
34
C
A
35
n
13
DA
35
C
C
36
n
14
DC
36
C
T
37
n
15
DT
37
C
MET
1
n
1
MET
1
M
GLU
2
n
2
GLU
2
M
TRP
3
n
3
TRP
3
M
LYS
4
n
4
LYS
4
M
ASP
5
n
5
ASP
5
M
ILE
6
n
6
ILE
6
M
LYS
7
n
7
LYS
7
M
GLY
8
n
8
GLY
8
M
TYR
9
n
9
TYR
9
M
GLU
10
n
10
GLU
10
M
GLY
11
n
11
GLY
11
M
HIS
12
n
12
HIS
12
M
TYR
13
n
13
TYR
13
M
GLN
14
n
14
GLN
14
M
VAL
15
n
15
VAL
15
M
SER
16
n
16
SER
16
M
ASN
17
n
17
ASN
17
M
THR
18
n
18
THR
18
M
GLY
19
n
19
GLY
19
M
GLU
20
n
20
GLU
20
M
VAL
21
n
21
VAL
21
M
TYR
22
n
22
TYR
22
M
SER
23
n
23
SER
23
M
ILE
24
n
24
ILE
24
M
LYS
25
n
25
LYS
25
M
SER
26
n
26
SER
26
M
GLY
27
n
27
GLY
27
M
LYS
28
n
28
LYS
28
M
THR
29
n
29
THR
29
M
LEU
30
n
30
LEU
30
M
LYS
31
n
31
LYS
31
M
HIS
32
n
32
HIS
32
M
GLN
33
n
33
GLN
33
M
ILE
34
n
34
ILE
34
M
PRO
35
n
35
PRO
35
M
LYS
36
n
36
LYS
36
M
ASP
37
n
37
ASP
37
M
GLY
38
n
38
GLY
38
M
TYR
39
n
39
TYR
39
M
HIS
40
n
40
HIS
40
M
ARG
41
n
41
ARG
41
M
ILE
42
n
42
ILE
42
M
GLY
43
n
43
GLY
43
M
LEU
44
n
44
LEU
44
M
PHE
45
n
45
PHE
45
M
LYS
46
n
46
LYS
46
M
GLY
47
n
47
GLY
47
M
GLY
48
n
48
GLY
48
M
LYS
49
n
49
LYS
49
M
GLY
50
n
50
GLY
50
M
LYS
51
n
51
LYS
51
M
THR
52
n
52
THR
52
M
PHE
53
n
53
PHE
53
M
GLN
54
n
54
GLN
54
M
VAL
55
n
55
VAL
55
M
HIS
56
n
56
HIS
56
M
ARG
57
n
57
ARG
57
M
LEU
58
n
58
LEU
58
M
VAL
59
n
59
VAL
59
M
ALA
60
n
60
ALA
60
M
ILE
61
n
61
ILE
61
M
HIS
62
n
62
HIS
62
M
PHE
63
n
63
PHE
63
M
CYS
64
n
64
CYS
64
M
GLU
65
n
65
GLU
65
M
GLY
66
n
66
GLY
66
M
TYR
67
n
67
TYR
67
M
GLU
68
n
68
GLU
68
M
GLU
69
n
69
GLU
69
M
GLY
70
n
70
GLY
70
M
LEU
71
n
71
LEU
71
M
VAL
72
n
72
VAL
72
M
VAL
73
n
73
VAL
73
M
ASP
74
n
74
ASP
74
M
HIS
75
n
75
HIS
75
M
LYS
76
n
76
LYS
76
M
ASP
77
n
77
ASP
77
M
GLY
78
n
78
GLY
78
M
ASN
79
n
79
ASN
79
M
LYS
80
n
80
LYS
80
M
ASP
81
n
81
ASP
81
M
ASN
82
n
82
ASN
82
M
ASN
83
n
83
ASN
83
M
LEU
84
n
84
LEU
84
M
SER
85
n
85
SER
85
M
THR
86
n
86
THR
86
M
ASN
87
n
87
ASN
87
M
LEU
88
n
88
LEU
88
M
ARG
89
n
89
ARG
89
M
TRP
90
n
90
TRP
90
M
VAL
91
n
91
VAL
91
M
THR
92
n
92
THR
92
M
GLN
93
n
93
GLN
93
M
LYS
94
n
94
LYS
94
M
ILE
95
n
95
ILE
95
M
ASN
96
n
96
ASN
96
M
VAL
97
n
97
VAL
97
M
GLU
98
n
98
GLU
98
M
ASN
99
n
99
ASN
99
M
GLN
100
n
100
GLN
100
M
MET
101
n
101
MET
101
M
SER
102
n
102
SER
102
M
ARG
103
n
103
ARG
103
M
GLY
104
n
104
GLY
104
M
THR
105
n
105
THR
105
M
LEU
106
n
106
LEU
106
M
ASN
107
n
107
ASN
107
M
VAL
108
n
108
VAL
108
M
SER
109
n
109
SER
109
M
LYS
110
n
110
LYS
110
M
ALA
111
n
111
ALA
111
M
GLN
112
n
112
GLN
112
M
GLN
113
n
113
GLN
113
M
ILE
114
n
114
ILE
114
M
ALA
115
n
115
ALA
115
M
LYS
116
n
116
LYS
116
M
ILE
117
n
117
ILE
117
M
LYS
118
n
118
LYS
118
M
ASN
119
n
119
ASN
119
M
GLN
120
n
120
GLN
120
M
LYS
121
n
121
LYS
121
M
PRO
122
n
122
PRO
122
M
ILE
123
n
123
ILE
123
M
ILE
124
n
124
ILE
124
M
VAL
125
n
125
VAL
125
M
ILE
126
n
126
ILE
126
M
SER
127
n
127
SER
127
M
PRO
128
n
128
PRO
128
M
ASP
129
n
129
ASP
129
M
GLY
130
n
130
GLY
130
M
ILE
131
n
131
ILE
131
M
GLU
132
n
132
GLU
132
M
LYS
133
n
133
LYS
133
M
GLU
134
n
134
GLU
134
M
TYR
135
n
135
TYR
135
M
PRO
136
n
136
PRO
136
M
SER
137
n
137
SER
137
M
THR
138
n
138
THR
138
M
LYS
139
n
139
LYS
139
M
CYS
140
n
140
CYS
140
M
ALA
141
n
141
ALA
141
M
CYS
142
n
142
CYS
142
M
GLU
143
n
143
GLU
143
M
GLU
144
n
144
GLU
144
M
LEU
145
n
145
LEU
145
M
GLY
146
n
146
GLY
146
M
LEU
147
n
147
LEU
147
M
THR
148
n
148
THR
148
M
ARG
149
n
149
ARG
149
M
GLY
150
n
150
GLY
150
M
LYS
151
n
151
LYS
151
M
VAL
152
n
152
VAL
152
M
THR
153
n
153
THR
153
M
ASP
154
n
154
ASP
154
M
VAL
155
n
155
VAL
155
M
LEU
156
n
156
LEU
156
M
LYS
157
n
157
LYS
157
M
GLY
158
n
158
GLY
158
M
HIS
159
n
159
HIS
159
M
ARG
160
n
160
ARG
160
M
ILE
161
n
161
ILE
161
M
HIS
162
n
162
HIS
162
M
HIS
163
n
163
HIS
163
M
LYS
164
n
164
LYS
164
M
GLY
165
n
165
GLY
165
M
TYR
166
n
166
TYR
166
M
THR
167
n
167
THR
167
M
PHE
168
n
168
PHE
168
M
ARG
169
n
169
ARG
169
M
TYR
170
n
170
TYR
170
M
LYS
171
n
171
LYS
171
M
LEU
172
n
172
LEU
172
M
ASN
173
n
173
ASN
173
M
GLY
174
n
174
GLY
174
M
author_defined_assembly
4
tetrameric
A
HOH
418
R
O
HOH
1_555
A
SR
415
F
SR
SR
1_555
A
HOH
418
R
O
HOH
3_555
175.8
A
HOH
418
R
O
HOH
1_555
A
SR
415
F
SR
SR
1_555
B
HOH
405
S
O
HOH
1_555
117.4
A
HOH
418
R
O
HOH
3_555
A
SR
415
F
SR
SR
1_555
B
HOH
405
S
O
HOH
1_555
66.5
A
HOH
418
R
O
HOH
1_555
A
SR
415
F
SR
SR
1_555
B
HOH
405
S
O
HOH
3_555
65.6
A
HOH
418
R
O
HOH
3_555
A
SR
415
F
SR
SR
1_555
B
HOH
405
S
O
HOH
3_555
117.4
B
HOH
405
S
O
HOH
1_555
A
SR
415
F
SR
SR
1_555
B
HOH
405
S
O
HOH
3_555
81.5
B
DC
22
B
O3'
DC
21
1_555
M
MN
413
K
MN
MN
1_555
C
DG
23
C
OP3
DG
1
1_555
82.0
B
DC
22
B
O3'
DC
21
1_555
M
MN
413
K
MN
MN
1_555
M
ASP
74
D
OD1
ASP
74
1_555
145.8
C
DG
23
C
OP3
DG
1
1_555
M
MN
413
K
MN
MN
1_555
M
ASP
74
D
OD1
ASP
74
1_555
69.0
B
DC
22
B
O3'
DC
21
1_555
M
MN
413
K
MN
MN
1_555
M
ASN
96
D
OD1
ASN
96
1_555
75.7
C
DG
23
C
OP3
DG
1
1_555
M
MN
413
K
MN
MN
1_555
M
ASN
96
D
OD1
ASN
96
1_555
94.7
M
ASP
74
D
OD1
ASP
74
1_555
M
MN
413
K
MN
MN
1_555
M
ASN
96
D
OD1
ASN
96
1_555
88.7
B
DC
22
B
O3'
DC
21
1_555
M
MN
413
K
MN
MN
1_555
M
HOH
420
U
O
HOH
1_555
131.1
C
DG
23
C
OP3
DG
1
1_555
M
MN
413
K
MN
MN
1_555
M
HOH
420
U
O
HOH
1_555
99.9
M
ASP
74
D
OD1
ASP
74
1_555
M
MN
413
K
MN
MN
1_555
M
HOH
420
U
O
HOH
1_555
73.5
M
ASN
96
D
OD1
ASN
96
1_555
M
MN
413
K
MN
MN
1_555
M
HOH
420
U
O
HOH
1_555
150.9
B
DC
22
B
O3'
DC
21
1_555
M
MN
413
K
MN
MN
1_555
M
HOH
421
U
O
HOH
1_555
72.2
C
DG
23
C
OP3
DG
1
1_555
M
MN
413
K
MN
MN
1_555
M
HOH
421
U
O
HOH
1_555
152.8
M
ASP
74
D
OD1
ASP
74
1_555
M
MN
413
K
MN
MN
1_555
M
HOH
421
U
O
HOH
1_555
131.5
M
ASN
96
D
OD1
ASN
96
1_555
M
MN
413
K
MN
MN
1_555
M
HOH
421
U
O
HOH
1_555
71.2
M
HOH
420
U
O
HOH
1_555
M
MN
413
K
MN
MN
1_555
M
HOH
421
U
O
HOH
1_555
103.4
B
HOH
404
S
O
HOH
1_555
M
SR
418
M
SR
SR
1_555
M
LYS
118
D
O
LYS
118
1_555
154.8
M
LYS
118
D
O
LYS
118
1_555
M
SR
417
L
SR
SR
1_555
M
GLN
120
D
O
GLN
120
1_555
90.8
M
LYS
118
D
O
LYS
118
1_555
M
SR
417
L
SR
SR
1_555
M
SR
418
M
SR
SR
1_555
56.0
M
GLN
120
D
O
GLN
120
1_555
M
SR
417
L
SR
SR
1_555
M
SR
418
M
SR
SR
1_555
116.8
M
LYS
118
D
O
LYS
118
1_555
M
SR
417
L
SR
SR
1_555
M
HOH
425
U
O
HOH
1_555
144.9
M
GLN
120
D
O
GLN
120
1_555
M
SR
417
L
SR
SR
1_555
M
HOH
425
U
O
HOH
1_555
89.9
M
SR
418
M
SR
SR
1_555
M
SR
417
L
SR
SR
1_555
M
HOH
425
U
O
HOH
1_555
148.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
M
N
LYS
4
D
N
LYS
4
M
O
VAL
15
D
O
VAL
15
M
N
GLN
14
D
N
GLN
14
M
O
TYR
22
D
O
TYR
22
M
N
VAL
21
D
N
VAL
21
M
O
LEU
30
D
O
LEU
30
M
N
ILE
42
D
N
ILE
42
M
O
PHE
53
D
O
PHE
53
M
N
VAL
72
D
N
VAL
72
M
O
VAL
91
D
O
VAL
91
M
O
LYS
133
D
O
LYS
133
M
N
VAL
125
D
N
VAL
125
M
N
ILE
124
D
N
ILE
124
M
O
ARG
169
D
O
ARG
169
1
A
SR
415
F
SR
1
1.95
0.30
108.30
110.25
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
2.09
0.30
108.30
110.39
C
C
C
O4'
C1'
N1
DT
DT
DT
24
24
24
N
1
3.24
0.50
106.80
110.04
C
C
C
O4'
C1'
C2'
DT
DT
DT
25
25
25
N
1
-4.13
0.40
104.50
100.37
C
C
C
O4'
C4'
C3'
DG
DG
DG
27
27
27
N
1
3.41
0.50
106.80
110.21
C
C
C
O4'
C1'
C2'
DT
DT
DT
30
30
30
N
1
1.87
0.30
108.30
110.17
C
C
C
O4'
C1'
N1
DT
DT
DT
30
30
30
N
1
1.86
0.30
108.30
110.16
C
C
C
O4'
C1'
N1
DT
DT
DT
33
33
33
N
1
3.93
0.50
106.80
110.73
C
C
C
O4'
C1'
C2'
DA
DA
DA
35
35
35
N
1
C
C
P
OP3
DG
DG
23
23
-0.097
0.012
1.607
1.510
N
1
M
TYR
9
-144.95
23.01
1
M
PRO
35
-54.40
-164.38
1
M
ASN
173
66.34
106.68
68.65
6.855
0.0
0.0
-14.829
0.00
7.974
0.247
0.216
0.22
0.22
2.92
50
2174
13440
13360
10
random
1,2
anisotropic
THROUGHOUT
1
2.0
SAD
pdb from SAD phase and DM with solvent flipping
Engh & Huber
0.45
0.4
5
0.68
0.51
2.92
50
31
2936
41
1471
1393
1.267
0.0066
0.465
0.428
3.02
159
0.4128
0.363
3.15
122
2.9
50
1U3E
13440
13360
2
1
0.065
1,2
23.3
4.5
99.4
0.433
2.9
2.96
2.4
717
0.433
1,2
4
97
data collection
HKL-2000
data scaling
SCALEPACK
refinement
CNS
data reduction
HKL-2000
phasing
CNS
DNA binding and cleavage by the HNH homing endonuclease I-HmuI
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
7
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
8
N
N
9
N
N
9
N
N
9
N
N
9
N
N
one biological assembly per asymmetric unit
M
VAL
55
D
VAL
55
HELX_P
M
CYS
64
D
CYS
64
1
1
10
M
LEU
84
D
LEU
84
HELX_P
M
THR
86
D
THR
86
5
2
3
M
THR
92
D
THR
92
HELX_P
M
GLY
104
D
GLY
104
1
3
13
M
VAL
108
D
VAL
108
HELX_P
M
ASN
119
D
ASN
119
1
4
12
M
SER
137
D
SER
137
HELX_P
M
GLY
146
D
GLY
146
1
5
10
M
THR
148
D
THR
148
HELX_P
M
LYS
157
D
LYS
157
1
6
10
metalc
3.125
A
SR
414
E
SR
SR
1_555
A
HOH
424
R
O
HOH
1_555
metalc
3.375
A
SR
415
F
SR
SR
1_555
A
HOH
418
R
O
HOH
1_555
metalc
3.335
A
SR
415
F
SR
SR
1_555
A
HOH
418
R
O
HOH
3_555
metalc
3.091
A
SR
415
F
SR
SR
1_555
B
HOH
405
S
O
HOH
1_555
metalc
3.130
A
SR
415
F
SR
SR
1_555
B
HOH
405
S
O
HOH
3_555
metalc
2.666
B
DC
22
B
O3'
DC
21
1_555
M
MN
413
K
MN
MN
1_555
metalc
3.087
B
HOH
404
S
O
HOH
1_555
M
SR
418
M
SR
SR
1_555
metalc
2.276
C
DG
23
C
OP3
DG
1
1_555
M
MN
413
K
MN
MN
1_555
metalc
2.470
M
ASP
74
D
OD1
ASP
74
1_555
M
MN
413
K
MN
MN
1_555
metalc
2.429
M
ASN
96
D
OD1
ASN
96
1_555
M
MN
413
K
MN
MN
1_555
metalc
2.812
M
LYS
118
D
O
LYS
118
1_555
M
SR
417
L
SR
SR
1_555
metalc
2.834
M
LYS
118
D
O
LYS
118
1_555
M
SR
418
M
SR
SR
1_555
metalc
3.015
M
GLN
120
D
O
GLN
120
1_555
M
SR
417
L
SR
SR
1_555
metalc
1.911
M
MN
413
K
MN
MN
1_555
M
HOH
420
U
O
HOH
1_555
metalc
1.858
M
MN
413
K
MN
MN
1_555
M
HOH
421
U
O
HOH
1_555
metalc
3.183
M
SR
417
L
SR
SR
1_555
M
SR
418
M
SR
SR
1_555
metalc
3.170
M
SR
417
L
SR
SR
1_555
M
HOH
425
U
O
HOH
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
1
1_555
C
DC
36
C
N3
DC
14
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
1
1_555
C
DC
36
C
O2
DC
14
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
1
1_555
C
DC
36
C
N4
DC
14
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
3
1_555
C
DT
34
C
N3
DT
12
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
3
1_555
C
DT
34
C
O4
DT
12
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
4
1_555
C
DT
33
C
N3
DT
11
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
4
1_555
C
DT
33
C
O4
DT
11
1_555
hydrog
WATSON-CRICK
A
DT
6
A
N3
DT
5
1_555
C
DA
32
C
N1
DA
10
1_555
hydrog
WATSON-CRICK
A
DT
6
A
O4
DT
5
1_555
C
DA
32
C
N6
DA
10
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
6
1_555
C
DC
31
C
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
6
1_555
C
DC
31
C
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
6
1_555
C
DC
31
C
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N1
DA
7
1_555
C
DT
30
C
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N6
DA
7
1_555
C
DT
30
C
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
8
1_555
C
DC
29
C
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
8
1_555
C
DC
29
C
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
8
1_555
C
DC
29
C
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N3
DC
9
1_555
C
DG
28
C
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N4
DC
9
1_555
C
DG
28
C
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
10
A
O2
DC
9
1_555
C
DG
28
C
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
10
1_555
C
DG
27
C
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
10
1_555
C
DG
27
C
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
10
1_555
C
DG
27
C
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DT
12
A
N3
DT
11
1_555
C
DA
26
C
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
12
A
O4
DT
11
1_555
C
DA
26
C
N6
DA
4
1_555
hydrog
DT-DG MISPAIR
A
DT
12
A
O2
DT
11
1_555
C
DG
27
C
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DA
13
A
N1
DA
12
1_555
C
DT
25
C
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
13
A
N6
DA
12
1_555
C
DT
25
C
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
14
A
N1
DA
13
1_555
C
DT
24
C
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DA
14
A
N6
DA
13
1_555
C
DT
24
C
O4
DT
2
1_555
hydrog
WATSON-CRICK
A
DC
15
A
N3
DC
14
1_555
C
DG
23
C
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
15
A
N4
DC
14
1_555
C
DG
23
C
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
15
A
O2
DC
14
1_555
C
DG
23
C
N2
DG
1
1_555
hydrog
WATSON-CRICK
A
DG
16
A
N1
DG
15
1_555
B
DC
22
B
N3
DC
21
1_555
hydrog
WATSON-CRICK
A
DG
16
A
N2
DG
15
1_555
B
DC
22
B
O2
DC
21
1_555
hydrog
WATSON-CRICK
A
DG
16
A
O6
DG
15
1_555
B
DC
22
B
N4
DC
21
1_555
hydrog
WATSON-CRICK
A
DC
17
A
N3
DC
16
1_555
B
DG
21
B
N1
DG
20
1_555
hydrog
WATSON-CRICK
A
DC
17
A
N4
DC
16
1_555
B
DG
21
B
O6
DG
20
1_555
hydrog
WATSON-CRICK
A
DC
17
A
O2
DC
16
1_555
B
DG
21
B
N2
DG
20
1_555
hydrog
WATSON-CRICK
A
DT
18
A
N3
DT
17
1_555
B
DA
20
B
N1
DA
19
1_555
hydrog
WATSON-CRICK
A
DT
18
A
O4
DT
17
1_555
B
DA
20
B
N6
DA
19
1_555
hydrog
WATSON-CRICK
A
DC
19
A
N3
DC
18
1_555
B
DG
19
B
N1
DG
18
1_555
hydrog
WATSON-CRICK
A
DC
19
A
N4
DC
18
1_555
B
DG
19
B
O6
DG
18
1_555
hydrog
WATSON-CRICK
A
DC
19
A
O2
DC
18
1_555
B
DG
19
B
N2
DG
18
1_555
hydrog
WATSON-CRICK
A
DA
20
A
N1
DA
19
1_555
B
DT
18
B
N3
DT
17
1_555
hydrog
WATSON-CRICK
A
DA
20
A
N6
DA
19
1_555
B
DT
18
B
O4
DT
17
1_555
hydrog
WATSON-CRICK
A
DG
21
A
N1
DG
20
1_555
B
DC
17
B
N3
DC
16
1_555
hydrog
WATSON-CRICK
A
DG
21
A
N2
DG
20
1_555
B
DC
17
B
O2
DC
16
1_555
hydrog
WATSON-CRICK
A
DG
21
A
O6
DG
20
1_555
B
DC
17
B
N4
DC
16
1_555
hydrog
WATSON-CRICK
A
DC
22
A
N3
DC
21
1_555
B
DG
16
B
N1
DG
15
1_555
hydrog
WATSON-CRICK
A
DC
22
A
N4
DC
21
1_555
B
DG
16
B
O6
DG
15
1_555
hydrog
WATSON-CRICK
A
DC
22
A
O2
DC
21
1_555
B
DG
16
B
N2
DG
15
1_555
hydrog
WATSON-CRICK
A
DA
23
A
N1
DA
22
1_555
B
DT
15
B
N3
DT
14
1_555
hydrog
WATSON-CRICK
A
DA
23
A
N6
DA
22
1_555
B
DT
15
B
O4
DT
14
1_555
hydrog
WATSON-CRICK
A
DA
24
A
N1
DA
23
1_555
B
DT
14
B
N3
DT
13
1_555
hydrog
WATSON-CRICK
A
DA
24
A
N6
DA
23
1_555
B
DT
14
B
O4
DT
13
1_555
hydrog
WATSON-CRICK
A
DT
25
A
N3
DT
24
1_555
B
DA
13
B
N1
DA
12
1_555
hydrog
WATSON-CRICK
A
DT
25
A
O4
DT
24
1_555
B
DA
13
B
N6
DA
12
1_555
hydrog
WATSON-CRICK
A
DT
26
A
N3
DT
25
1_555
B
DA
12
B
N1
DA
11
1_555
hydrog
WATSON-CRICK
A
DT
26
A
O4
DT
25
1_555
B
DA
12
B
N6
DA
11
1_555
hydrog
WATSON-CRICK
A
DC
27
A
N3
DC
26
1_555
B
DG
11
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
27
A
N4
DC
26
1_555
B
DG
11
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
27
A
O2
DC
26
1_555
B
DG
11
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
28
A
N3
DC
27
1_555
B
DG
10
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
28
A
N4
DC
27
1_555
B
DG
10
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
28
A
O2
DC
27
1_555
B
DG
10
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
29
A
N3
DC
28
1_555
B
DG
9
B
N1
DG
8
1_555
hydrog
WATSON-CRICK
A
DC
29
A
N4
DC
28
1_555
B
DG
9
B
O6
DG
8
1_555
hydrog
WATSON-CRICK
A
DC
29
A
O2
DC
28
1_555
B
DG
9
B
N2
DG
8
1_555
hydrog
WATSON-CRICK
A
DA
30
A
N1
DA
29
1_555
B
DT
8
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
30
A
N6
DA
29
1_555
B
DT
8
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DC
31
A
N3
DC
30
1_555
B
DG
7
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
31
A
N4
DC
30
1_555
B
DG
7
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
31
A
O2
DC
30
1_555
B
DG
7
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DG
32
A
N1
DG
31
1_555
B
DC
6
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
32
A
N2
DG
31
1_555
B
DC
6
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
32
A
O6
DG
31
1_555
B
DC
6
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DT
33
A
N3
DT
32
1_555
B
DA
5
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
33
A
O4
DT
32
1_555
B
DA
5
B
N6
DA
4
1_555
hydrog
DA-DT PAIR
A
DA
35
A
N1
DA
34
1_555
B
DT
3
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DG
36
A
N1
DG
35
1_555
B
DC
2
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
36
A
N2
DG
35
1_555
B
DC
2
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
36
A
O6
DG
35
1_555
B
DC
2
B
N4
DC
1
1_555
DNA binding protein/DNA
HNH catalytic motif, Helix-turn-helix DNA binding domain, protein-DNA complex, DNA binding protein-DNA COMPLEX
YG31_BPSP1
UNP
4
1
P34081
MEWKDIKGYEGHYQVSNTGEVYSIKSGKTLKHQIPKDGYHRIGLFKGGKGKTFQVHRLVAIHFCEGYEEGLVVDHKDGNK
DNNLSTNLRWVTQKINVENQMSRGTLNVSKAQQIAKIKNQKPIIVISPDGIEKEYPSTKCACEELGLTRGKVTDVLKGHR
IHHKGYTFRYKLNG
1U3E
PDB
1
1U3E
1U3E
PDB
2
1U3E
1U3E
PDB
3
1U3E
1
174
1U3E
1
174
P34081
M
1
1
174
2
37
1U3E
2
37
1U3E
A
2
1
36
2
22
1U3E
2
22
1U3E
B
3
1
21
23
37
1U3E
23
37
1U3E
C
4
1
15
4
2
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
M
TRP
3
D
TRP
3
M
ASP
5
D
ASP
5
M
TYR
13
D
TYR
13
M
SER
16
D
SER
16
M
VAL
21
D
VAL
21
M
SER
23
D
SER
23
M
THR
29
D
THR
29
M
LEU
30
D
LEU
30
M
ARG
41
D
ARG
41
M
LYS
46
D
LYS
46
M
LYS
49
D
LYS
49
M
GLN
54
D
GLN
54
M
VAL
72
D
VAL
72
M
HIS
75
D
HIS
75
M
LEU
88
D
LEU
88
M
VAL
91
D
VAL
91
M
GLU
132
D
GLU
132
M
TYR
135
D
TYR
135
M
ILE
123
D
ILE
123
M
ILE
126
D
ILE
126
M
THR
167
D
THR
167
M
TYR
170
D
TYR
170
BINDING SITE FOR RESIDUE MN M 413
M
MN
413
Software
6
BINDING SITE FOR RESIDUE SR A 414
A
SR
414
Software
1
BINDING SITE FOR RESIDUE SR A 415
A
SR
415
Software
1
BINDING SITE FOR RESIDUE SR M 417
M
SR
417
Software
3
BINDING SITE FOR RESIDUE SR M 418
M
SR
418
Software
3
BINDING SITE FOR RESIDUE EDO C 397
C
EDO
397
Software
4
BINDING SITE FOR RESIDUE EDO M 398
M
EDO
398
Software
4
BINDING SITE FOR RESIDUE EDO M 399
M
EDO
399
Software
2
BINDING SITE FOR RESIDUE EDO M 400
M
EDO
400
Software
5
BINDING SITE FOR RESIDUE EDO A 401
A
EDO
401
Software
4
BINDING SITE FOR RESIDUE EDO B 403
B
EDO
403
Software
5
BINDING SITE FOR RESIDUE TRS M 404
M
TRS
404
Software
5
B
DC
22
B
DC
21
6
1_555
C
DG
23
C
DG
1
6
1_555
M
ASP
74
D
ASP
74
6
1_555
M
ASN
96
D
ASN
96
6
1_555
M
HOH
420
U
HOH
6
1_555
M
HOH
421
U
HOH
6
1_555
B
EDO
403
I
EDO
1
1_555
B
HOH
405
S
HOH
1
1_555
M
LYS
118
D
LYS
118
3
1_555
M
GLN
120
D
GLN
120
3
1_555
M
SR
418
M
SR
3
1_555
B
HOH
404
S
HOH
3
1_555
M
LYS
118
D
LYS
118
3
1_555
M
SR
417
L
SR
3
1_555
C
DG
27
C
DG
5
4
1_555
C
DG
28
C
DG
6
4
1_555
M
GLY
50
D
GLY
50
4
1_555
M
THR
52
D
THR
52
4
1_555
B
DT
8
B
DT
7
4
1_555
M
ARG
160
D
ARG
160
4
1_555
M
ILE
161
D
ILE
161
4
1_555
M
HIS
162
D
HIS
162
4
1_555
M
PRO
128
D
PRO
128
2
1_555
M
HOH
427
U
HOH
2
1_555
M
LYS
7
D
LYS
7
5
1_555
M
HIS
62
D
HIS
62
5
1_555
M
CYS
64
D
CYS
64
5
1_555
M
GLU
65
D
GLU
65
5
1_555
M
GLU
134
D
GLU
134
5
7_555
A
DA
20
A
DA
19
4
1_555
A
DG
21
A
DG
20
4
1_555
A
HOH
416
R
HOH
4
1_555
B
DG
16
B
DG
15
4
1_555
A
DC
27
A
DC
26
5
1_555
A
DC
28
A
DC
27
5
1_555
A
SR
414
E
SR
5
1_555
B
DA
12
B
DA
11
5
1_555
B
DA
13
B
DA
12
5
1_555
M
TRP
3
D
TRP
3
5
1_555
M
GLN
14
D
GLN
14
5
1_555
M
ASP
129
D
ASP
129
5
7_555
M
HOH
430
U
HOH
5
1_555
M
HOH
432
U
HOH
5
1_555
23
I 2 2 2