0.012469
0.000000
0.000000
0.000000
0.011734
0.000000
0.000000
0.000000
0.010842
0.00000
0.00000
0.00000
Conners, R.
Cameron, A.
Read, J.
Schambach, F.
Sessions, R.B.
Brady, R.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
80.196
85.225
92.232
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C12 H8 O4
216.190
2,6-DICARBOXYNAPHTHALENE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
S
C
N
256
N
O
N
257
N
C
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
N
282
N
C
N
283
N
O
N
284
N
O
N
285
N
C
N
286
N
O
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
C
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
R
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
N
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
Y
258
N
doub
Y
259
N
sing
N
260
N
sing
Y
261
N
sing
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
sing
N
266
N
sing
Y
267
N
doub
Y
268
N
sing
Y
269
N
sing
N
270
N
sing
Y
271
N
doub
N
272
N
sing
Y
273
N
sing
N
274
N
sing
Y
275
N
doub
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
Y
294
N
doub
Y
295
N
sing
Y
296
N
sing
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
NE
Mol.Biochem.Parasitol.
MBIPDP
2085
0166-6851
142
137
148
10.1016/j.molbiopara.2005.03.015
15978953
Mapping the binding site for gossypol-like inhibitors of Plasmodium falciparum lactate dehydrogenase.
2005
10.2210/pdb1u4o/pdb
pdb_00001u4o
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Mirrors
IMAGE PLATE
2001-09-03
MAC Science DIP-2020
Graphite
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ENRAF-NONIUS FR591
34846.387
L-lactate dehydrogenase
1.1.1.27
1
man
polymer
216.190
2,6-DICARBOXYNAPHTHALENE
1
syn
non-polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
2
syn
non-polymer
18.015
water
319
nat
water
LDH-P
no
no
APKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG
FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKY
YISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHASPYVAPAA
AIIEMAESYLKDLKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKALAHHHHH
H
APKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG
FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKY
YISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHASPYVAPAA
AIIEMAESYLKDLKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKALAHHHHH
H
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
malaria parasite P. falciparum
Plasmodium
Escherichia
sample
5833
Plasmodium falciparum
562
Escherichia coli
JM109
Plasmid
pKK223
1
2.3
46.5
VAPOR DIFFUSION, HANGING DROP
7.5
MPD, Hepes, Imidazole, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2005-06-21
1
1
2008-04-30
1
2
2011-07-13
1
3
2023-08-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Plasmodium falciparum lactate dehydrogenase complexed with 2,6-naphthalenedisulphonic acid
Plasmodium falciparum lactate dehydrogenase complexed with 3,7-dihydroxynaphthalene-2-carboxylic acid
Plasmodium falciparum lactate dehydrogenase complexed with 3,7-dihydroxynaphthalene-2-carboxylic acid and NAD+
RCSB
Y
RCSB
2004-07-26
REL
REL
NDD
2,6-DICARBOXYNAPHTHALENE
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
HOH
water
1LDG
PDB entry 1LDG
PDB
experimental model
NDD
1
2
NDD
NDD
401
A
MPD
1
3
MPD
MPD
501
A
MPD
2
3
MPD
MPD
502
A
HOH
1
4
HOH
HOH
503
A
HOH
2
4
HOH
HOH
504
A
HOH
3
4
HOH
HOH
505
A
HOH
4
4
HOH
HOH
506
A
HOH
5
4
HOH
HOH
507
A
HOH
6
4
HOH
HOH
508
A
HOH
7
4
HOH
HOH
509
A
HOH
8
4
HOH
HOH
510
A
HOH
9
4
HOH
HOH
511
A
HOH
10
4
HOH
HOH
512
A
HOH
11
4
HOH
HOH
513
A
HOH
12
4
HOH
HOH
514
A
HOH
13
4
HOH
HOH
515
A
HOH
14
4
HOH
HOH
516
A
HOH
15
4
HOH
HOH
517
A
HOH
16
4
HOH
HOH
518
A
HOH
17
4
HOH
HOH
519
A
HOH
18
4
HOH
HOH
520
A
HOH
19
4
HOH
HOH
521
A
HOH
20
4
HOH
HOH
522
A
HOH
21
4
HOH
HOH
523
A
HOH
22
4
HOH
HOH
524
A
HOH
23
4
HOH
HOH
525
A
HOH
24
4
HOH
HOH
526
A
HOH
25
4
HOH
HOH
527
A
HOH
26
4
HOH
HOH
528
A
HOH
27
4
HOH
HOH
529
A
HOH
28
4
HOH
HOH
530
A
HOH
29
4
HOH
HOH
531
A
HOH
30
4
HOH
HOH
532
A
HOH
31
4
HOH
HOH
533
A
HOH
32
4
HOH
HOH
534
A
HOH
33
4
HOH
HOH
535
A
HOH
34
4
HOH
HOH
536
A
HOH
35
4
HOH
HOH
537
A
HOH
36
4
HOH
HOH
538
A
HOH
37
4
HOH
HOH
539
A
HOH
38
4
HOH
HOH
540
A
HOH
39
4
HOH
HOH
541
A
HOH
40
4
HOH
HOH
542
A
HOH
41
4
HOH
HOH
543
A
HOH
42
4
HOH
HOH
544
A
HOH
43
4
HOH
HOH
545
A
HOH
44
4
HOH
HOH
546
A
HOH
45
4
HOH
HOH
547
A
HOH
46
4
HOH
HOH
548
A
HOH
47
4
HOH
HOH
549
A
HOH
48
4
HOH
HOH
550
A
HOH
49
4
HOH
HOH
551
A
HOH
50
4
HOH
HOH
552
A
HOH
51
4
HOH
HOH
553
A
HOH
52
4
HOH
HOH
554
A
HOH
53
4
HOH
HOH
555
A
HOH
54
4
HOH
HOH
556
A
HOH
55
4
HOH
HOH
557
A
HOH
56
4
HOH
HOH
558
A
HOH
57
4
HOH
HOH
559
A
HOH
58
4
HOH
HOH
560
A
HOH
59
4
HOH
HOH
561
A
HOH
60
4
HOH
HOH
562
A
HOH
61
4
HOH
HOH
563
A
HOH
62
4
HOH
HOH
564
A
HOH
63
4
HOH
HOH
565
A
HOH
64
4
HOH
HOH
566
A
HOH
65
4
HOH
HOH
567
A
HOH
66
4
HOH
HOH
568
A
HOH
67
4
HOH
HOH
569
A
HOH
68
4
HOH
HOH
570
A
HOH
69
4
HOH
HOH
571
A
HOH
70
4
HOH
HOH
572
A
HOH
71
4
HOH
HOH
573
A
HOH
72
4
HOH
HOH
574
A
HOH
73
4
HOH
HOH
575
A
HOH
74
4
HOH
HOH
576
A
HOH
75
4
HOH
HOH
577
A
HOH
76
4
HOH
HOH
578
A
HOH
77
4
HOH
HOH
579
A
HOH
78
4
HOH
HOH
580
A
HOH
79
4
HOH
HOH
581
A
HOH
80
4
HOH
HOH
582
A
HOH
81
4
HOH
HOH
583
A
HOH
82
4
HOH
HOH
584
A
HOH
83
4
HOH
HOH
585
A
HOH
84
4
HOH
HOH
586
A
HOH
85
4
HOH
HOH
587
A
HOH
86
4
HOH
HOH
588
A
HOH
87
4
HOH
HOH
589
A
HOH
88
4
HOH
HOH
590
A
HOH
89
4
HOH
HOH
591
A
HOH
90
4
HOH
HOH
592
A
HOH
91
4
HOH
HOH
593
A
HOH
92
4
HOH
HOH
594
A
HOH
93
4
HOH
HOH
595
A
HOH
94
4
HOH
HOH
596
A
HOH
95
4
HOH
HOH
597
A
HOH
96
4
HOH
HOH
598
A
HOH
97
4
HOH
HOH
599
A
HOH
98
4
HOH
HOH
600
A
HOH
99
4
HOH
HOH
601
A
HOH
100
4
HOH
HOH
602
A
HOH
101
4
HOH
HOH
603
A
HOH
102
4
HOH
HOH
604
A
HOH
103
4
HOH
HOH
605
A
HOH
104
4
HOH
HOH
606
A
HOH
105
4
HOH
HOH
607
A
HOH
106
4
HOH
HOH
608
A
HOH
107
4
HOH
HOH
609
A
HOH
108
4
HOH
HOH
610
A
HOH
109
4
HOH
HOH
611
A
HOH
110
4
HOH
HOH
612
A
HOH
111
4
HOH
HOH
613
A
HOH
112
4
HOH
HOH
614
A
HOH
113
4
HOH
HOH
615
A
HOH
114
4
HOH
HOH
616
A
HOH
115
4
HOH
HOH
617
A
HOH
116
4
HOH
HOH
618
A
HOH
117
4
HOH
HOH
619
A
HOH
118
4
HOH
HOH
620
A
HOH
119
4
HOH
HOH
621
A
HOH
120
4
HOH
HOH
622
A
HOH
121
4
HOH
HOH
623
A
HOH
122
4
HOH
HOH
624
A
HOH
123
4
HOH
HOH
625
A
HOH
125
4
HOH
HOH
626
A
HOH
126
4
HOH
HOH
627
A
HOH
127
4
HOH
HOH
628
A
HOH
128
4
HOH
HOH
629
A
HOH
129
4
HOH
HOH
630
A
HOH
130
4
HOH
HOH
631
A
HOH
131
4
HOH
HOH
632
A
HOH
132
4
HOH
HOH
633
A
HOH
133
4
HOH
HOH
634
A
HOH
134
4
HOH
HOH
635
A
HOH
135
4
HOH
HOH
636
A
HOH
136
4
HOH
HOH
637
A
HOH
137
4
HOH
HOH
638
A
HOH
138
4
HOH
HOH
639
A
HOH
139
4
HOH
HOH
640
A
HOH
141
4
HOH
HOH
641
A
HOH
142
4
HOH
HOH
642
A
HOH
143
4
HOH
HOH
643
A
HOH
144
4
HOH
HOH
644
A
HOH
145
4
HOH
HOH
645
A
HOH
146
4
HOH
HOH
646
A
HOH
147
4
HOH
HOH
647
A
HOH
149
4
HOH
HOH
648
A
HOH
150
4
HOH
HOH
649
A
HOH
151
4
HOH
HOH
650
A
HOH
152
4
HOH
HOH
651
A
HOH
153
4
HOH
HOH
652
A
HOH
154
4
HOH
HOH
653
A
HOH
155
4
HOH
HOH
654
A
HOH
157
4
HOH
HOH
655
A
HOH
158
4
HOH
HOH
656
A
HOH
159
4
HOH
HOH
657
A
HOH
160
4
HOH
HOH
658
A
HOH
161
4
HOH
HOH
659
A
HOH
162
4
HOH
HOH
660
A
HOH
163
4
HOH
HOH
661
A
HOH
164
4
HOH
HOH
662
A
HOH
165
4
HOH
HOH
663
A
HOH
166
4
HOH
HOH
664
A
HOH
167
4
HOH
HOH
665
A
HOH
169
4
HOH
HOH
666
A
HOH
171
4
HOH
HOH
667
A
HOH
172
4
HOH
HOH
668
A
HOH
174
4
HOH
HOH
669
A
HOH
175
4
HOH
HOH
670
A
HOH
176
4
HOH
HOH
671
A
HOH
178
4
HOH
HOH
672
A
HOH
179
4
HOH
HOH
673
A
HOH
180
4
HOH
HOH
674
A
HOH
181
4
HOH
HOH
675
A
HOH
182
4
HOH
HOH
676
A
HOH
183
4
HOH
HOH
677
A
HOH
184
4
HOH
HOH
678
A
HOH
186
4
HOH
HOH
679
A
HOH
187
4
HOH
HOH
680
A
HOH
188
4
HOH
HOH
681
A
HOH
189
4
HOH
HOH
682
A
HOH
190
4
HOH
HOH
683
A
HOH
191
4
HOH
HOH
684
A
HOH
193
4
HOH
HOH
685
A
HOH
195
4
HOH
HOH
686
A
HOH
197
4
HOH
HOH
687
A
HOH
198
4
HOH
HOH
688
A
HOH
199
4
HOH
HOH
689
A
HOH
200
4
HOH
HOH
690
A
HOH
201
4
HOH
HOH
691
A
HOH
203
4
HOH
HOH
692
A
HOH
204
4
HOH
HOH
693
A
HOH
205
4
HOH
HOH
694
A
HOH
206
4
HOH
HOH
695
A
HOH
207
4
HOH
HOH
696
A
HOH
208
4
HOH
HOH
697
A
HOH
209
4
HOH
HOH
698
A
HOH
210
4
HOH
HOH
699
A
HOH
211
4
HOH
HOH
700
A
HOH
212
4
HOH
HOH
701
A
HOH
213
4
HOH
HOH
702
A
HOH
214
4
HOH
HOH
703
A
HOH
215
4
HOH
HOH
704
A
HOH
216
4
HOH
HOH
705
A
HOH
217
4
HOH
HOH
706
A
HOH
218
4
HOH
HOH
707
A
HOH
219
4
HOH
HOH
708
A
HOH
220
4
HOH
HOH
709
A
HOH
221
4
HOH
HOH
710
A
HOH
222
4
HOH
HOH
711
A
HOH
223
4
HOH
HOH
712
A
HOH
224
4
HOH
HOH
713
A
HOH
225
4
HOH
HOH
714
A
HOH
226
4
HOH
HOH
715
A
HOH
227
4
HOH
HOH
716
A
HOH
228
4
HOH
HOH
717
A
HOH
229
4
HOH
HOH
718
A
HOH
230
4
HOH
HOH
719
A
HOH
231
4
HOH
HOH
720
A
HOH
232
4
HOH
HOH
721
A
HOH
233
4
HOH
HOH
722
A
HOH
234
4
HOH
HOH
723
A
HOH
235
4
HOH
HOH
724
A
HOH
237
4
HOH
HOH
725
A
HOH
238
4
HOH
HOH
726
A
HOH
239
4
HOH
HOH
727
A
HOH
240
4
HOH
HOH
728
A
HOH
241
4
HOH
HOH
729
A
HOH
242
4
HOH
HOH
730
A
HOH
243
4
HOH
HOH
731
A
HOH
244
4
HOH
HOH
732
A
HOH
245
4
HOH
HOH
733
A
HOH
246
4
HOH
HOH
734
A
HOH
247
4
HOH
HOH
735
A
HOH
248
4
HOH
HOH
736
A
HOH
249
4
HOH
HOH
737
A
HOH
250
4
HOH
HOH
738
A
HOH
251
4
HOH
HOH
739
A
HOH
252
4
HOH
HOH
740
A
HOH
253
4
HOH
HOH
741
A
HOH
254
4
HOH
HOH
742
A
HOH
256
4
HOH
HOH
743
A
HOH
257
4
HOH
HOH
744
A
HOH
258
4
HOH
HOH
745
A
HOH
259
4
HOH
HOH
746
A
HOH
260
4
HOH
HOH
747
A
HOH
261
4
HOH
HOH
748
A
HOH
262
4
HOH
HOH
749
A
HOH
263
4
HOH
HOH
750
A
HOH
264
4
HOH
HOH
751
A
HOH
266
4
HOH
HOH
752
A
HOH
267
4
HOH
HOH
753
A
HOH
268
4
HOH
HOH
754
A
HOH
269
4
HOH
HOH
755
A
HOH
271
4
HOH
HOH
756
A
HOH
272
4
HOH
HOH
757
A
HOH
273
4
HOH
HOH
758
A
HOH
274
4
HOH
HOH
759
A
HOH
275
4
HOH
HOH
760
A
HOH
276
4
HOH
HOH
761
A
HOH
277
4
HOH
HOH
762
A
HOH
278
4
HOH
HOH
763
A
HOH
279
4
HOH
HOH
764
A
HOH
280
4
HOH
HOH
765
A
HOH
281
4
HOH
HOH
766
A
HOH
282
4
HOH
HOH
767
A
HOH
283
4
HOH
HOH
768
A
HOH
284
4
HOH
HOH
769
A
HOH
285
4
HOH
HOH
770
A
HOH
287
4
HOH
HOH
771
A
HOH
288
4
HOH
HOH
772
A
HOH
289
4
HOH
HOH
773
A
HOH
290
4
HOH
HOH
774
A
HOH
291
4
HOH
HOH
775
A
HOH
293
4
HOH
HOH
776
A
HOH
294
4
HOH
HOH
777
A
HOH
295
4
HOH
HOH
778
A
HOH
296
4
HOH
HOH
779
A
HOH
297
4
HOH
HOH
780
A
HOH
298
4
HOH
HOH
781
A
HOH
299
4
HOH
HOH
782
A
HOH
300
4
HOH
HOH
783
A
HOH
301
4
HOH
HOH
784
A
HOH
302
4
HOH
HOH
785
A
HOH
303
4
HOH
HOH
786
A
HOH
304
4
HOH
HOH
787
A
HOH
305
4
HOH
HOH
788
A
HOH
306
4
HOH
HOH
789
A
HOH
307
4
HOH
HOH
790
A
HOH
309
4
HOH
HOH
791
A
HOH
310
4
HOH
HOH
792
A
HOH
311
4
HOH
HOH
793
A
HOH
312
4
HOH
HOH
794
A
HOH
313
4
HOH
HOH
795
A
HOH
314
4
HOH
HOH
796
A
HOH
315
4
HOH
HOH
797
A
HOH
317
4
HOH
HOH
798
A
HOH
318
4
HOH
HOH
799
A
HOH
319
4
HOH
HOH
800
A
HOH
320
4
HOH
HOH
801
A
HOH
321
4
HOH
HOH
802
A
HOH
322
4
HOH
HOH
803
A
HOH
323
4
HOH
HOH
804
A
HOH
324
4
HOH
HOH
805
A
HOH
325
4
HOH
HOH
806
A
HOH
326
4
HOH
HOH
807
A
HOH
327
4
HOH
HOH
808
A
HOH
328
4
HOH
HOH
809
A
HOH
329
4
HOH
HOH
810
A
HOH
330
4
HOH
HOH
811
A
HOH
331
4
HOH
HOH
812
A
HOH
332
4
HOH
HOH
813
A
HOH
333
4
HOH
HOH
814
A
HOH
334
4
HOH
HOH
815
A
HOH
335
4
HOH
HOH
816
A
HOH
336
4
HOH
HOH
817
A
HOH
337
4
HOH
HOH
818
A
HOH
338
4
HOH
HOH
819
A
HOH
339
4
HOH
HOH
820
A
HOH
340
4
HOH
HOH
821
A
ALA
18
n
1
ALA
18
A
PRO
19
n
2
PRO
19
A
LYS
20
n
3
LYS
20
A
ALA
21
n
4
ALA
21
A
LYS
22
n
5
LYS
22
A
ILE
23
n
6
ILE
23
A
VAL
24
n
7
VAL
24
A
LEU
25
n
8
LEU
25
A
VAL
26
n
9
VAL
26
A
GLY
27
n
10
GLY
27
A
SER
28
n
11
SER
28
A
GLY
29
n
12
GLY
29
A
MET
30
n
13
MET
30
A
ILE
31
n
14
ILE
31
A
GLY
32
n
15
GLY
32
A
GLY
33
n
16
GLY
33
A
VAL
35
n
17
VAL
35
A
MET
36
n
18
MET
36
A
ALA
37
n
19
ALA
37
A
THR
38
n
20
THR
38
A
LEU
39
n
21
LEU
39
A
ILE
40
n
22
ILE
40
A
VAL
41
n
23
VAL
41
A
GLN
42
n
24
GLN
42
A
LYS
43
n
25
LYS
43
A
ASN
44
n
26
ASN
44
A
LEU
45
n
27
LEU
45
A
GLY
46
n
28
GLY
46
A
ASP
47
n
29
ASP
47
A
VAL
49
n
30
VAL
49
A
VAL
50
n
31
VAL
50
A
LEU
51
n
32
LEU
51
A
PHE
52
n
33
PHE
52
A
ASP
53
n
34
ASP
53
A
ILE
54
n
35
ILE
54
A
VAL
55
n
36
VAL
55
A
LYS
56
n
37
LYS
56
A
ASN
57
n
38
ASN
57
A
MET
58
n
39
MET
58
A
PRO
59
n
40
PRO
59
A
HIS
60
n
41
HIS
60
A
GLY
61
n
42
GLY
61
A
LYS
62
n
43
LYS
62
A
ALA
63
n
44
ALA
63
A
LEU
64
n
45
LEU
64
A
ASP
65
n
46
ASP
65
A
THR
66
n
47
THR
66
A
SER
67
n
48
SER
67
A
HIS
68
n
49
HIS
68
A
THR
69
n
50
THR
69
A
ASN
70
n
51
ASN
70
A
VAL
71
n
52
VAL
71
A
MET
72
n
53
MET
72
A
ALA
73
n
54
A
ALA
73
A
TYR
73
n
55
B
TYR
73
A
SER
74
n
56
SER
74
A
ASN
75
n
57
ASN
75
A
CYS
76
n
58
CYS
76
A
LYS
77
n
59
LYS
77
A
VAL
78
n
60
VAL
78
A
SER
79
n
61
SER
79
A
GLY
80
n
62
GLY
80
A
SER
81
n
63
SER
81
A
ASN
83
n
64
ASN
83
A
THR
84
n
65
THR
84
A
TYR
85
n
66
TYR
85
A
ASP
86
n
67
ASP
86
A
ASP
87
n
68
ASP
87
A
LEU
88
n
69
LEU
88
A
ALA
89
n
70
ALA
89
A
GLY
90
n
71
GLY
90
A
ALA
91
n
72
ALA
91
A
ASP
92
n
73
ASP
92
A
VAL
93
n
74
VAL
93
A
VAL
94
n
75
VAL
94
A
ILE
95
n
76
ILE
95
A
VAL
96
n
77
VAL
96
A
THR
97
n
78
THR
97
A
ALA
98
n
79
ALA
98
A
GLY
99
n
80
GLY
99
A
PHE
100
n
81
PHE
100
A
THR
101
n
82
THR
101
A
LYS
102
n
83
LYS
102
A
n
84
103
A
n
85
104
A
n
86
105
A
n
87
106
A
n
88
A
107
A
n
89
B
107
A
n
90
C
107
A
n
91
D
107
A
n
92
E
107
A
ASN
108
n
93
ASN
108
A
ARG
109
n
94
ARG
109
A
ASP
110
n
95
ASP
110
A
ASP
111
n
96
ASP
111
A
LEU
112
n
97
LEU
112
A
LEU
113
n
98
LEU
113
A
PRO
114
n
99
PRO
114
A
LEU
115
n
100
LEU
115
A
ASN
116
n
101
ASN
116
A
ASN
117
n
102
ASN
117
A
LYS
118
n
103
LYS
118
A
ILE
119
n
104
ILE
119
A
MET
120
n
105
MET
120
A
ILE
121
n
106
ILE
121
A
GLU
122
n
107
GLU
122
A
ILE
123
n
108
ILE
123
A
GLY
124
n
109
GLY
124
A
GLY
125
n
110
GLY
125
A
HIS
126
n
111
HIS
126
A
ILE
127
n
112
ILE
127
A
LYS
128
n
113
LYS
128
A
LYS
129
n
114
LYS
129
A
ASN
130
n
115
ASN
130
A
CYS
131
n
116
CYS
131
A
PRO
132
n
117
A
PRO
132
A
ASN
132
n
118
B
ASN
132
A
ALA
133
n
119
ALA
133
A
PHE
134
n
120
PHE
134
A
ILE
135
n
121
ILE
135
A
ILE
136
n
122
ILE
136
A
VAL
137
n
123
VAL
137
A
VAL
138
n
124
VAL
138
A
THR
139
n
125
THR
139
A
ASN
140
n
126
ASN
140
A
PRO
141
n
127
PRO
141
A
VAL
142
n
128
VAL
142
A
ASP
143
n
129
ASP
143
A
VAL
144
n
130
VAL
144
A
MET
145
n
131
MET
145
A
VAL
146
n
132
VAL
146
A
GLN
147
n
133
GLN
147
A
LEU
148
n
134
LEU
148
A
LEU
149
n
135
LEU
149
A
HIS
150
n
136
HIS
150
A
GLN
151
n
137
GLN
151
A
HIS
152
n
138
HIS
152
A
SER
153
n
139
SER
153
A
GLY
154
n
140
GLY
154
A
VAL
155
n
141
VAL
155
A
PRO
156
n
142
PRO
156
A
LYS
157
n
143
LYS
157
A
ASN
158
n
144
ASN
158
A
LYS
159
n
145
LYS
159
A
ILE
160
n
146
ILE
160
A
ILE
161
n
147
ILE
161
A
GLY
162
n
148
GLY
162
A
LEU
163
n
149
LEU
163
A
GLY
164
n
150
GLY
164
A
GLY
165
n
151
GLY
165
A
VAL
166
n
152
VAL
166
A
LEU
167
n
153
LEU
167
A
ASP
168
n
154
ASP
168
A
THR
169
n
155
THR
169
A
SER
170
n
156
SER
170
A
ARG
171
n
157
ARG
171
A
LEU
172
n
158
LEU
172
A
LYS
173
n
159
LYS
173
A
TYR
174
n
160
TYR
174
A
TYR
175
n
161
TYR
175
A
ILE
176
n
162
ILE
176
A
SER
177
n
163
SER
177
A
GLN
178
n
164
GLN
178
A
LYS
179
n
165
LYS
179
A
LEU
180
n
166
LEU
180
A
ASN
181
n
167
ASN
181
A
VAL
182
n
168
VAL
182
A
CYS
183
n
169
CYS
183
A
PRO
184
n
170
PRO
184
A
ARG
185
n
171
ARG
185
A
ASP
186
n
172
ASP
186
A
VAL
187
n
173
VAL
187
A
ASN
188
n
174
ASN
188
A
ALA
189
n
175
ALA
189
A
HIS
190
n
176
HIS
190
A
ILE
191
n
177
ILE
191
A
VAL
192
n
178
VAL
192
A
GLY
193
n
179
GLY
193
A
ALA
194
n
180
ALA
194
A
HIS
195
n
181
HIS
195
A
GLY
196
n
182
GLY
196
A
ASN
197
n
183
ASN
197
A
LYS
198
n
184
LYS
198
A
MET
199
n
185
MET
199
A
VAL
200
n
186
VAL
200
A
LEU
201
n
187
LEU
201
A
LEU
202
n
188
LEU
202
A
LYS
203
n
189
LYS
203
A
ARG
204
n
190
ARG
204
A
TYR
205
n
191
TYR
205
A
ILE
206
n
192
ILE
206
A
THR
207
n
193
THR
207
A
VAL
208
n
194
VAL
208
A
GLY
209
n
195
A
GLY
209
A
GLY
209
n
196
B
GLY
209
A
ILE
209
n
197
C
ILE
209
A
PRO
209
n
198
D
PRO
209
A
LEU
210
n
199
A
LEU
210
A
GLN
210
n
200
B
GLN
210
A
GLU
211
n
201
GLU
211
A
PHE
212
n
202
PHE
212
A
ILE
213
n
203
ILE
213
A
ASN
214
n
204
ASN
214
A
ASN
215
n
205
ASN
215
A
LYS
216
n
206
LYS
216
A
LEU
218
n
207
LEU
218
A
ILE
219
n
208
ILE
219
A
SER
220
n
209
SER
220
A
ASP
221
n
210
ASP
221
A
ALA
222
n
211
ALA
222
A
GLU
223
n
212
GLU
223
A
LEU
225
n
213
LEU
225
A
GLU
226
n
214
GLU
226
A
ALA
227
n
215
ALA
227
A
ILE
228
n
216
ILE
228
A
PHE
229
n
217
PHE
229
A
ASP
230
n
218
ASP
230
A
ARG
231
n
219
ARG
231
A
THR
232
n
220
THR
232
A
VAL
233
n
221
VAL
233
A
ASN
234
n
222
ASN
234
A
THR
235
n
223
THR
235
A
ALA
236
n
224
ALA
236
A
LEU
237
n
225
LEU
237
A
GLU
238
n
226
GLU
238
A
ILE
239
n
227
ILE
239
A
VAL
240
n
228
VAL
240
A
ASN
241
n
229
ASN
241
A
LEU
242
n
230
LEU
242
A
HIS
243
n
231
HIS
243
A
ALA
244
n
232
ALA
244
A
SER
245
n
233
SER
245
A
PRO
246
n
234
PRO
246
A
TYR
247
n
235
TYR
247
A
VAL
248
n
236
VAL
248
A
ALA
249
n
237
ALA
249
A
PRO
250
n
238
PRO
250
A
ALA
251
n
239
ALA
251
A
ALA
252
n
240
ALA
252
A
ALA
253
n
241
ALA
253
A
ILE
254
n
242
ILE
254
A
ILE
255
n
243
ILE
255
A
GLU
256
n
244
GLU
256
A
MET
257
n
245
MET
257
A
ALA
258
n
246
ALA
258
A
GLU
259
n
247
GLU
259
A
SER
260
n
248
SER
260
A
TYR
261
n
249
TYR
261
A
LEU
262
n
250
LEU
262
A
LYS
263
n
251
LYS
263
A
ASP
264
n
252
ASP
264
A
LEU
265
n
253
LEU
265
A
LYS
266
n
254
LYS
266
A
LYS
267
n
255
LYS
267
A
VAL
268
n
256
VAL
268
A
LEU
269
n
257
LEU
269
A
ILE
270
n
258
ILE
270
A
CYS
271
n
259
CYS
271
A
SER
272
n
260
SER
272
A
THR
273
n
261
THR
273
A
LEU
274
n
262
LEU
274
A
LEU
275
n
263
LEU
275
A
GLU
276
n
264
GLU
276
A
GLY
277
n
265
GLY
277
A
GLN
278
n
266
GLN
278
A
TYR
279
n
267
TYR
279
A
GLY
280
n
268
GLY
280
A
HIS
281
n
269
HIS
281
A
SER
282
n
270
SER
282
A
ASP
283
n
271
ASP
283
A
ILE
285
n
272
ILE
285
A
PHE
286
n
273
PHE
286
A
GLY
287
n
274
GLY
287
A
GLY
288
n
275
GLY
288
A
THR
289
n
276
THR
289
A
PRO
290
n
277
PRO
290
A
VAL
291
n
278
VAL
291
A
VAL
292
n
279
VAL
292
A
LEU
293
n
280
LEU
293
A
GLY
294
n
281
GLY
294
A
ALA
295
n
282
ALA
295
A
ASN
296
n
283
ASN
296
A
GLY
297
n
284
GLY
297
A
VAL
298
n
285
VAL
298
A
GLU
299
n
286
GLU
299
A
GLN
301
n
287
GLN
301
A
VAL
302
n
288
VAL
302
A
ILE
303
n
289
ILE
303
A
GLU
304
n
290
GLU
304
A
LEU
305
n
291
LEU
305
A
GLN
306
n
292
GLN
306
A
LEU
307
n
293
LEU
307
A
ASN
308
n
294
ASN
308
A
SER
309
n
295
SER
309
A
GLU
310
n
296
GLU
310
A
GLU
311
n
297
GLU
311
A
LYS
312
n
298
LYS
312
A
ALA
313
n
299
ALA
313
A
LYS
314
n
300
LYS
314
A
PHE
315
n
301
PHE
315
A
ASP
316
n
302
ASP
316
A
GLU
317
n
303
GLU
317
A
ALA
318
n
304
ALA
318
A
ILE
319
n
305
ILE
319
A
ALA
320
n
306
ALA
320
A
GLU
321
n
307
GLU
321
A
THR
322
n
308
THR
322
A
LYS
323
n
309
LYS
323
A
ARG
324
n
310
ARG
324
A
MET
325
n
311
MET
325
A
LYS
326
n
312
LYS
326
A
ALA
327
n
313
ALA
327
A
LEU
328
n
314
LEU
328
A
ALA
329
n
315
ALA
329
A
HIS
330
n
316
HIS
330
A
HIS
331
n
317
HIS
331
A
HIS
332
n
318
HIS
332
A
n
319
333
A
n
320
334
A
n
321
335
A
author_and_software_defined_assembly
PISA,PQS
4
tetrameric
19980
-181
40780
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-x+1,-y+1,z
crystal symmetry operation
80.1960000000
85.2250000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_655
-x+1,y,-z
crystal symmetry operation
80.1960000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_565
x,-y+1,-z
crystal symmetry operation
0.0000000000
85.2250000000
0.0000000000
A
O
SER
79
A
O
SER
61
A
N
LEU
51
A
N
LEU
32
A
O
VAL
50
A
O
VAL
31
A
N
LEU
25
A
N
LEU
8
A
N
VAL
24
A
N
VAL
7
A
O
VAL
93
A
O
VAL
74
A
N
VAL
94
A
N
VAL
75
A
O
ILE
136
A
O
ILE
122
A
N
VAL
137
A
N
VAL
123
A
O
ILE
161
A
O
ILE
147
A
N
ASN
188
A
N
ASN
174
A
O
THR
207
A
O
THR
193
A
N
VAL
208
A
N
VAL
194
C
A
O
ILE
209
A
O
ILE
197
A
N
VAL
192
A
N
VAL
178
A
O
VAL
200
A
O
VAL
186
A
N
LEU
275
A
N
LEU
263
A
O
ILE
285
A
O
ILE
272
A
N
VAL
292
A
N
VAL
279
A
O
GLU
299
A
O
GLU
286
1
A
HOH
793
E
HOH
1
A
CE
LYS
20
A
CE
LYS
3
0
Y
1
A
NZ
LYS
20
A
NZ
LYS
3
0
Y
1
A
CE
LYS
77
A
CE
LYS
59
0
Y
1
A
NZ
LYS
77
A
NZ
LYS
59
0
Y
1
A
CB
LYS
102
A
CB
LYS
83
0
Y
1
A
CG
LYS
102
A
CG
LYS
83
0
Y
1
A
CD
LYS
102
A
CD
LYS
83
0
Y
1
A
CE
LYS
102
A
CE
LYS
83
0
Y
1
A
NZ
LYS
102
A
NZ
LYS
83
0
Y
1
A
CD
LYS
118
A
CD
LYS
103
0
Y
1
A
CE
LYS
118
A
CE
LYS
103
0
Y
1
A
NZ
LYS
118
A
NZ
LYS
103
0
Y
1
A
CD
LYS
129
A
CD
LYS
114
0
Y
1
A
CE
LYS
129
A
CE
LYS
114
0
Y
1
A
NZ
LYS
129
A
NZ
LYS
114
0
Y
B
1
A
CB
ASN
132
A
CB
ASN
118
0
Y
B
1
A
CG
ASN
132
A
CG
ASN
118
0
Y
B
1
A
OD1
ASN
132
A
OD1
ASN
118
0
Y
B
1
A
ND2
ASN
132
A
ND2
ASN
118
0
Y
1
A
CE
LYS
198
A
CE
LYS
184
0
Y
1
A
NZ
LYS
198
A
NZ
LYS
184
0
Y
1
A
CD
LYS
216
A
CD
LYS
206
0
Y
1
A
CE
LYS
216
A
CE
LYS
206
0
Y
1
A
NZ
LYS
216
A
NZ
LYS
206
0
Y
1
A
CG
GLU
226
A
CG
GLU
214
0
Y
1
A
CD
GLU
226
A
CD
GLU
214
0
Y
1
A
OE1
GLU
226
A
OE1
GLU
214
0
Y
1
A
OE2
GLU
226
A
OE2
GLU
214
0
Y
1
A
CE
LYS
314
A
CE
LYS
300
0
Y
1
A
NZ
LYS
314
A
NZ
LYS
300
0
Y
1
A
CB
HIS
331
A
CB
HIS
317
0
Y
1
A
CG
HIS
331
A
CG
HIS
317
0
Y
1
A
ND1
HIS
331
A
ND1
HIS
317
0
Y
1
A
CD2
HIS
331
A
CD2
HIS
317
0
Y
1
A
CE1
HIS
331
A
CE1
HIS
317
0
Y
1
A
NE2
HIS
331
A
NE2
HIS
317
0
Y
1
A
ALA
103
A
ALA
84
1
Y
1
A
PRO
104
A
PRO
85
1
Y
1
A
GLY
105
A
GLY
86
1
Y
1
A
LYS
106
A
LYS
87
1
Y
A
1
A
SER
107
A
SER
88
1
Y
B
1
A
ASP
107
A
ASP
89
1
Y
C
1
A
LYS
107
A
LYS
90
1
Y
D
1
A
GLU
107
A
GLU
91
1
Y
E
1
A
TRP
107
A
TRP
92
1
Y
1
A
HIS
333
A
HIS
319
1
Y
1
A
HIS
334
A
HIS
320
1
Y
1
A
HIS
335
A
HIS
321
1
Y
1
A
A
C
N
LYS
LEU
216
218
1.61
1
15.42
2.20
111.40
126.82
A
A
A
CG1
CB
CG2
ILE
ILE
ILE
54
54
54
B
B
N
1
-18.86
2.60
111.60
92.74
A
A
A
CB
CG
CD
LYS
LYS
LYS
118
118
118
N
1
A
A
CD
CE
LYS
LYS
20
20
-0.257
0.025
1.508
1.251
N
1
A
A
C
N
GLY
VAL
33
35
0.160
0.023
1.336
1.496
Y
1
A
A
CD
CE
LYS
LYS
77
77
-0.166
0.025
1.508
1.342
N
1
A
A
C
N
SER
ASN
81
83
0.184
0.023
1.336
1.520
Y
1
A
A
CG
CD
LYS
LYS
118
118
0.206
0.034
1.520
1.726
N
1
A
A
C
N
LYS
LEU
216
218
0.274
0.023
1.336
1.610
Y
1
A
A
C
N
GLU
LEU
223
225
0.261
0.023
1.336
1.597
Y
1
A
A
CB
CG
GLU
GLU
226
226
-0.115
0.019
1.517
1.402
N
1
A
ASN
57
78.39
-50.29
1
A
CYS
131
-148.05
59.49
11.329
-0.44
0.00
0.00
1.03
0.00
-0.59
0.966
0.948
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.18054
0.14514
0.14689
0.14689
1.70
29.24
1673
33274
31601
5.0
94.57
1.771
0.058
RANDOM
1
Isotropic
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
0.091
0.092
0.80
0.80
1.40
PDB entry 1LDG
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.70
29.24
319
2693
32
0
2342
0.013
0.022
2374
0.002
0.020
2235
1.390
1.977
3211
1.354
3.000
5195
5.555
5.000
300
0.112
0.200
388
0.008
0.020
2576
0.011
0.020
408
0.321
0.200
541
0.235
0.200
2508
0.085
0.200
1372
0.150
0.200
230
0.169
0.200
17
0.268
0.200
89
0.181
0.200
29
0.654
1.500
1519
1.145
2.000
2444
1.969
3.000
855
3.137
4.500
767
0.251
0.213
1.740
98
2080
2178
20
1.70
30.00
1U4O
33794
2.0
2.0
0.087
1
13.5
7
96.0
1.70
1.78
3.3
0.29
1
3
93.2
refinement
REFMAC
5.1.24
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
Plasmodium falciparum lactate dehydrogenase complexed with 2,6-naphthalenedicarboxylic acid
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
A
GLY
29
A
GLY
12
HELX_P
A
LYS
43
A
LYS
25
1
1
14
A
ASN
57
A
ASN
38
HELX_P
A
HIS
68
A
HIS
49
1
2
12
A
HIS
68
A
HIS
49
HELX_P
A
TYR
73
A
TYR
55
1
3
7
B
A
THR
84
A
THR
65
HELX_P
A
ALA
89
A
ALA
70
5
4
6
A
ASN
108
A
ASN
93
HELX_P
A
ASP
111
A
ASP
96
5
5
4
A
LEU
112
A
LEU
97
HELX_P
A
CYS
131
A
CYS
116
1
6
20
A
PRO
141
A
PRO
127
HELX_P
A
GLY
154
A
GLY
140
1
7
14
A
PRO
156
A
PRO
142
HELX_P
A
ASN
158
A
ASN
144
5
8
3
A
GLY
164
A
GLY
150
HELX_P
A
ASN
181
A
ASN
167
1
9
18
A
CYS
183
A
CYS
169
HELX_P
A
ARG
185
A
ARG
171
5
10
3
A
LYS
203
A
LYS
189
HELX_P
A
TYR
205
A
TYR
191
5
11
3
A
LEU
210
A
LEU
199
HELX_P
A
ASN
215
A
ASN
205
1
12
7
A
A
SER
220
A
SER
209
HELX_P
A
ASN
234
A
ASN
222
1
13
14
A
ASN
234
A
ASN
222
HELX_P
A
LEU
242
A
LEU
230
1
14
9
A
TYR
247
A
TYR
235
HELX_P
A
LYS
263
A
LYS
251
1
15
17
A
GLN
278
A
GLN
266
HELX_P
A
GLY
280
A
GLY
268
5
16
3
A
ASN
308
A
ASN
294
HELX_P
A
HIS
330
A
HIS
316
1
17
23
OXIDOREDUCTASE
Protein-ligand complex, OXIDOREDUCTASE
A
ASN
140
A
ASN
126
1
A
PRO
141
A
PRO
127
-8.17
LDH1_PLAFD
UNP
1
2
Q27743
APKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG
FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKY
YISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHASPYVAPAA
AIIEMAESYLKDLKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKALA
2
316
1U4O
18
329
Q27743
A
1
1
315
1
expression tag
HIS
330
1U4O
A
Q27743
UNP
316
1
expression tag
HIS
331
1U4O
A
Q27743
UNP
317
1
expression tag
HIS
332
1U4O
A
Q27743
UNP
318
1
expression tag
HIS
333
1U4O
A
Q27743
UNP
319
1
expression tag
HIS
334
1U4O
A
Q27743
UNP
320
1
expression tag
HIS
335
1U4O
A
Q27743
UNP
321
6
3
2
3
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
78
A
VAL
60
A
SER
81
A
SER
63
A
ASP
47
A
ASP
29
A
PHE
52
A
PHE
33
A
LYS
22
A
LYS
5
A
VAL
26
A
VAL
9
A
VAL
93
A
VAL
74
A
VAL
96
A
VAL
77
A
PHE
134
A
PHE
120
A
VAL
137
A
VAL
123
A
ILE
160
A
ILE
146
A
GLY
162
A
GLY
148
A
VAL
187
A
VAL
173
A
ASN
188
A
ASN
174
A
THR
207
A
THR
193
A
VAL
208
A
VAL
194
A
ILE
209
A
ILE
197
A
PRO
209
A
PRO
198
C
D
A
ILE
191
A
ILE
177
A
VAL
192
A
VAL
178
A
VAL
200
A
VAL
186
A
LEU
201
A
LEU
187
A
LYS
267
A
LYS
255
A
GLU
276
A
GLU
264
A
SER
282
A
SER
270
A
GLY
294
A
GLY
281
A
GLY
297
A
GLY
284
A
VAL
302
A
VAL
288
BINDING SITE FOR RESIDUE NDD A 401
A
NDD
401
Software
14
BINDING SITE FOR RESIDUE MPD A 501
A
MPD
501
Software
6
BINDING SITE FOR RESIDUE MPD A 502
A
MPD
502
Software
2
A
MET
30
A
MET
13
14
1_555
A
ILE
31
A
ILE
14
14
1_555
A
LEU
167
A
LEU
153
14
1_555
A
HIS
195
A
HIS
181
14
1_555
A
SER
245
A
SER
233
14
1_555
A
PRO
246
A
PRO
234
14
1_555
A
TYR
247
A
TYR
235
14
1_555
A
MPD
501
C
MPD
14
1_555
A
HOH
575
E
HOH
14
1_555
A
HOH
668
E
HOH
14
1_555
A
HOH
670
E
HOH
14
1_555
A
HOH
693
E
HOH
14
1_555
A
HOH
697
E
HOH
14
1_555
A
HOH
700
E
HOH
14
1_555
A
THR
97
A
THR
78
6
1_555
A
THR
101
A
THR
82
6
1_555
A
ASN
140
A
ASN
126
6
1_555
A
NDD
401
B
NDD
6
1_555
A
HOH
706
E
HOH
6
1_555
A
HOH
716
E
HOH
6
1_555
A
LEU
237
A
LEU
225
2
1_555
A
VAL
240
A
VAL
228
2
1_555
23
I 2 2 2