0.012485
0.000000
0.000000
0.000000
0.011615
0.000000
0.000000
0.000000
0.010950
0.00000
0.00000
0.00000
Conners, R.
Cameron, A.
Read, J.
Schambach, F.
Sessions, R.B.
Brady, R.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
80.094
86.096
91.327
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H8 O6 S2
288.297
NAPHTHALENE-2,6-DISULFONIC ACID
2,6-NAPHTHALENEDISULFONIC ACID; 2,6-NAPHTHALENEDISULPHONIC ACID
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
S
N
76
N
O
N
77
N
O
Y
78
N
C
Y
79
N
C
Y
80
N
C
Y
81
N
C
Y
82
N
C
Y
83
N
C
Y
84
N
C
Y
85
N
C
Y
86
N
C
Y
87
N
C
N
88
N
S
N
89
N
O
N
90
N
O
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
R
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
S
N
106
N
O
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
S
C
N
116
N
C
N
117
N
O
N
118
N
C
N
119
N
C
N
120
N
C
N
121
N
O
N
122
N
N
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
O
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
Y
168
N
C
Y
169
N
N
Y
170
N
C
Y
171
N
C
Y
172
N
N
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
S
C
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
S
N
263
N
C
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
O
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
R
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
N
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
N
403
N
C
N
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
Y
75
N
doub
Y
76
N
sing
Y
77
N
sing
N
78
N
sing
Y
79
N
doub
N
80
N
sing
Y
81
N
sing
Y
82
N
sing
Y
83
N
doub
N
84
N
sing
Y
85
N
doub
Y
86
N
sing
N
87
N
sing
Y
88
N
doub
N
89
N
sing
Y
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
Y
167
N
sing
Y
168
N
doub
Y
169
N
doub
N
170
N
sing
Y
171
N
sing
N
172
N
sing
Y
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
Y
275
N
doub
Y
276
N
sing
Y
277
N
sing
N
278
N
sing
Y
279
N
doub
N
280
N
sing
Y
281
N
doub
N
282
N
sing
Y
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
doub
Y
349
N
sing
Y
350
N
sing
N
351
N
sing
Y
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
NE
Mol.Biochem.Parasitol.
MBIPDP
2085
0166-6851
142
137
148
10.1016/j.molbiopara.2005.03.015
15978953
Mapping the binding site for gossypol-like inhibitors of Plasmodium falciparum lactate dehydrogenase.
2005
10.2210/pdb1u4s/pdb
pdb_00001u4s
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Mirrors
IMAGE PLATE
2001-09-14
MACSCIENCE
Graphite
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ENRAF-NONIUS FR591
34846.387
L-lactate dehydrogenase
1.1.1.27
1
man
polymer
288.297
NAPHTHALENE-2,6-DISULFONIC ACID
1
syn
non-polymer
18.015
water
235
nat
water
LDH-P
no
no
APKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG
FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKY
YISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHASPYVAPAA
AIIEMAESYLKDLKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKALAHHHHH
H
APKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG
FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKY
YISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHASPYVAPAA
AIIEMAESYLKDLKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKALAHHHHH
H
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
malaria parasite P. falciparum
Plasmodium
Escherichia
sample
5833
Plasmodium falciparum
562
Escherichia coli
JM109
Plasmid
pKK223
1
2.4
48.41
VAPOR DIFFUSION, HANGING DROP
7.5
MPD, Hepes, Imidazole, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2005-06-21
1
1
2008-04-30
1
2
2011-07-13
1
3
2023-08-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Plasmodium falciparum lactate dehydrogenase complexed with 2,6-naphthalenedicarboxylic acid
Plasmodium falciparum lactate dehydrogenase complexed with 3,7-dihydroxynaphthalene-2-carboxylic acid
Plasmodium falciparum lactate dehydrogenase complexed with 3,7-dihydroxynaphthalene-2-carboxylic acid and NAD+
RCSB
Y
RCSB
2004-07-26
REL
REL
BIH
NAPHTHALENE-2,6-DISULFONIC ACID
HOH
water
1LDG
PDB model 1LDG
PDB
experimental model
BIH
1
2
BIH
BIH
336
A
HOH
1
3
HOH
HOH
337
A
HOH
2
3
HOH
HOH
338
A
HOH
3
3
HOH
HOH
339
A
HOH
4
3
HOH
HOH
340
A
HOH
5
3
HOH
HOH
341
A
HOH
6
3
HOH
HOH
342
A
HOH
7
3
HOH
HOH
343
A
HOH
8
3
HOH
HOH
344
A
HOH
9
3
HOH
HOH
345
A
HOH
10
3
HOH
HOH
346
A
HOH
11
3
HOH
HOH
347
A
HOH
12
3
HOH
HOH
348
A
HOH
13
3
HOH
HOH
349
A
HOH
14
3
HOH
HOH
350
A
HOH
15
3
HOH
HOH
351
A
HOH
16
3
HOH
HOH
352
A
HOH
17
3
HOH
HOH
353
A
HOH
18
3
HOH
HOH
354
A
HOH
19
3
HOH
HOH
355
A
HOH
20
3
HOH
HOH
356
A
HOH
21
3
HOH
HOH
357
A
HOH
22
3
HOH
HOH
358
A
HOH
23
3
HOH
HOH
359
A
HOH
24
3
HOH
HOH
360
A
HOH
25
3
HOH
HOH
361
A
HOH
26
3
HOH
HOH
362
A
HOH
27
3
HOH
HOH
363
A
HOH
28
3
HOH
HOH
364
A
HOH
29
3
HOH
HOH
365
A
HOH
30
3
HOH
HOH
366
A
HOH
31
3
HOH
HOH
367
A
HOH
32
3
HOH
HOH
368
A
HOH
33
3
HOH
HOH
369
A
HOH
34
3
HOH
HOH
370
A
HOH
35
3
HOH
HOH
371
A
HOH
36
3
HOH
HOH
372
A
HOH
37
3
HOH
HOH
373
A
HOH
38
3
HOH
HOH
374
A
HOH
39
3
HOH
HOH
375
A
HOH
40
3
HOH
HOH
376
A
HOH
41
3
HOH
HOH
377
A
HOH
42
3
HOH
HOH
378
A
HOH
43
3
HOH
HOH
379
A
HOH
44
3
HOH
HOH
380
A
HOH
45
3
HOH
HOH
381
A
HOH
46
3
HOH
HOH
382
A
HOH
47
3
HOH
HOH
383
A
HOH
48
3
HOH
HOH
384
A
HOH
49
3
HOH
HOH
385
A
HOH
50
3
HOH
HOH
386
A
HOH
51
3
HOH
HOH
387
A
HOH
52
3
HOH
HOH
388
A
HOH
53
3
HOH
HOH
389
A
HOH
54
3
HOH
HOH
390
A
HOH
55
3
HOH
HOH
391
A
HOH
56
3
HOH
HOH
392
A
HOH
57
3
HOH
HOH
393
A
HOH
58
3
HOH
HOH
394
A
HOH
59
3
HOH
HOH
395
A
HOH
60
3
HOH
HOH
396
A
HOH
61
3
HOH
HOH
397
A
HOH
62
3
HOH
HOH
398
A
HOH
63
3
HOH
HOH
399
A
HOH
64
3
HOH
HOH
400
A
HOH
65
3
HOH
HOH
401
A
HOH
66
3
HOH
HOH
402
A
HOH
67
3
HOH
HOH
403
A
HOH
68
3
HOH
HOH
404
A
HOH
69
3
HOH
HOH
405
A
HOH
70
3
HOH
HOH
406
A
HOH
71
3
HOH
HOH
407
A
HOH
72
3
HOH
HOH
408
A
HOH
73
3
HOH
HOH
409
A
HOH
74
3
HOH
HOH
410
A
HOH
75
3
HOH
HOH
411
A
HOH
76
3
HOH
HOH
412
A
HOH
77
3
HOH
HOH
413
A
HOH
78
3
HOH
HOH
414
A
HOH
79
3
HOH
HOH
415
A
HOH
80
3
HOH
HOH
416
A
HOH
81
3
HOH
HOH
417
A
HOH
82
3
HOH
HOH
418
A
HOH
83
3
HOH
HOH
419
A
HOH
84
3
HOH
HOH
420
A
HOH
85
3
HOH
HOH
421
A
HOH
86
3
HOH
HOH
422
A
HOH
87
3
HOH
HOH
423
A
HOH
88
3
HOH
HOH
424
A
HOH
89
3
HOH
HOH
425
A
HOH
90
3
HOH
HOH
426
A
HOH
91
3
HOH
HOH
427
A
HOH
92
3
HOH
HOH
428
A
HOH
93
3
HOH
HOH
429
A
HOH
94
3
HOH
HOH
430
A
HOH
95
3
HOH
HOH
431
A
HOH
96
3
HOH
HOH
432
A
HOH
97
3
HOH
HOH
433
A
HOH
98
3
HOH
HOH
434
A
HOH
99
3
HOH
HOH
435
A
HOH
100
3
HOH
HOH
436
A
HOH
101
3
HOH
HOH
437
A
HOH
102
3
HOH
HOH
438
A
HOH
103
3
HOH
HOH
439
A
HOH
104
3
HOH
HOH
440
A
HOH
105
3
HOH
HOH
441
A
HOH
106
3
HOH
HOH
442
A
HOH
107
3
HOH
HOH
443
A
HOH
108
3
HOH
HOH
444
A
HOH
109
3
HOH
HOH
445
A
HOH
110
3
HOH
HOH
446
A
HOH
111
3
HOH
HOH
447
A
HOH
112
3
HOH
HOH
448
A
HOH
113
3
HOH
HOH
449
A
HOH
114
3
HOH
HOH
450
A
HOH
115
3
HOH
HOH
451
A
HOH
116
3
HOH
HOH
452
A
HOH
117
3
HOH
HOH
453
A
HOH
118
3
HOH
HOH
454
A
HOH
119
3
HOH
HOH
455
A
HOH
120
3
HOH
HOH
456
A
HOH
121
3
HOH
HOH
457
A
HOH
122
3
HOH
HOH
458
A
HOH
123
3
HOH
HOH
459
A
HOH
126
3
HOH
HOH
460
A
HOH
127
3
HOH
HOH
461
A
HOH
129
3
HOH
HOH
462
A
HOH
130
3
HOH
HOH
463
A
HOH
131
3
HOH
HOH
464
A
HOH
132
3
HOH
HOH
465
A
HOH
133
3
HOH
HOH
466
A
HOH
134
3
HOH
HOH
467
A
HOH
135
3
HOH
HOH
468
A
HOH
136
3
HOH
HOH
469
A
HOH
138
3
HOH
HOH
470
A
HOH
139
3
HOH
HOH
471
A
HOH
140
3
HOH
HOH
472
A
HOH
141
3
HOH
HOH
473
A
HOH
142
3
HOH
HOH
474
A
HOH
143
3
HOH
HOH
475
A
HOH
144
3
HOH
HOH
476
A
HOH
145
3
HOH
HOH
477
A
HOH
146
3
HOH
HOH
478
A
HOH
147
3
HOH
HOH
479
A
HOH
148
3
HOH
HOH
480
A
HOH
150
3
HOH
HOH
481
A
HOH
151
3
HOH
HOH
482
A
HOH
153
3
HOH
HOH
483
A
HOH
154
3
HOH
HOH
484
A
HOH
155
3
HOH
HOH
485
A
HOH
156
3
HOH
HOH
486
A
HOH
157
3
HOH
HOH
487
A
HOH
158
3
HOH
HOH
488
A
HOH
159
3
HOH
HOH
489
A
HOH
160
3
HOH
HOH
490
A
HOH
161
3
HOH
HOH
491
A
HOH
162
3
HOH
HOH
492
A
HOH
163
3
HOH
HOH
493
A
HOH
164
3
HOH
HOH
494
A
HOH
165
3
HOH
HOH
495
A
HOH
166
3
HOH
HOH
496
A
HOH
167
3
HOH
HOH
497
A
HOH
168
3
HOH
HOH
498
A
HOH
170
3
HOH
HOH
499
A
HOH
171
3
HOH
HOH
500
A
HOH
172
3
HOH
HOH
501
A
HOH
173
3
HOH
HOH
502
A
HOH
174
3
HOH
HOH
503
A
HOH
175
3
HOH
HOH
504
A
HOH
176
3
HOH
HOH
505
A
HOH
177
3
HOH
HOH
506
A
HOH
178
3
HOH
HOH
507
A
HOH
179
3
HOH
HOH
508
A
HOH
180
3
HOH
HOH
509
A
HOH
181
3
HOH
HOH
510
A
HOH
182
3
HOH
HOH
511
A
HOH
183
3
HOH
HOH
512
A
HOH
184
3
HOH
HOH
513
A
HOH
185
3
HOH
HOH
514
A
HOH
186
3
HOH
HOH
515
A
HOH
187
3
HOH
HOH
516
A
HOH
188
3
HOH
HOH
517
A
HOH
189
3
HOH
HOH
518
A
HOH
190
3
HOH
HOH
519
A
HOH
191
3
HOH
HOH
520
A
HOH
192
3
HOH
HOH
521
A
HOH
193
3
HOH
HOH
522
A
HOH
194
3
HOH
HOH
523
A
HOH
195
3
HOH
HOH
524
A
HOH
196
3
HOH
HOH
525
A
HOH
197
3
HOH
HOH
526
A
HOH
198
3
HOH
HOH
527
A
HOH
199
3
HOH
HOH
528
A
HOH
200
3
HOH
HOH
529
A
HOH
201
3
HOH
HOH
530
A
HOH
202
3
HOH
HOH
531
A
HOH
203
3
HOH
HOH
532
A
HOH
204
3
HOH
HOH
533
A
HOH
205
3
HOH
HOH
534
A
HOH
206
3
HOH
HOH
535
A
HOH
207
3
HOH
HOH
536
A
HOH
208
3
HOH
HOH
537
A
HOH
210
3
HOH
HOH
538
A
HOH
211
3
HOH
HOH
539
A
HOH
212
3
HOH
HOH
540
A
HOH
213
3
HOH
HOH
541
A
HOH
214
3
HOH
HOH
542
A
HOH
215
3
HOH
HOH
543
A
HOH
216
3
HOH
HOH
544
A
HOH
218
3
HOH
HOH
545
A
HOH
220
3
HOH
HOH
546
A
HOH
221
3
HOH
HOH
547
A
HOH
223
3
HOH
HOH
548
A
HOH
224
3
HOH
HOH
549
A
HOH
225
3
HOH
HOH
550
A
HOH
226
3
HOH
HOH
551
A
HOH
229
3
HOH
HOH
552
A
HOH
230
3
HOH
HOH
553
A
HOH
231
3
HOH
HOH
554
A
HOH
233
3
HOH
HOH
555
A
HOH
235
3
HOH
HOH
556
A
HOH
236
3
HOH
HOH
557
A
HOH
237
3
HOH
HOH
558
A
HOH
238
3
HOH
HOH
559
A
HOH
239
3
HOH
HOH
560
A
HOH
241
3
HOH
HOH
561
A
HOH
242
3
HOH
HOH
562
A
HOH
243
3
HOH
HOH
563
A
HOH
244
3
HOH
HOH
564
A
HOH
245
3
HOH
HOH
565
A
HOH
247
3
HOH
HOH
566
A
HOH
248
3
HOH
HOH
567
A
HOH
249
3
HOH
HOH
568
A
HOH
250
3
HOH
HOH
569
A
HOH
252
3
HOH
HOH
570
A
HOH
254
3
HOH
HOH
571
A
ALA
18
n
1
ALA
18
A
PRO
19
n
2
PRO
19
A
LYS
20
n
3
LYS
20
A
ALA
21
n
4
ALA
21
A
LYS
22
n
5
LYS
22
A
ILE
23
n
6
ILE
23
A
VAL
24
n
7
VAL
24
A
LEU
25
n
8
LEU
25
A
VAL
26
n
9
VAL
26
A
GLY
27
n
10
GLY
27
A
SER
28
n
11
SER
28
A
GLY
29
n
12
GLY
29
A
MET
30
n
13
MET
30
A
ILE
31
n
14
ILE
31
A
GLY
32
n
15
GLY
32
A
GLY
33
n
16
GLY
33
A
VAL
35
n
17
VAL
35
A
MET
36
n
18
MET
36
A
ALA
37
n
19
ALA
37
A
THR
38
n
20
THR
38
A
LEU
39
n
21
LEU
39
A
ILE
40
n
22
ILE
40
A
VAL
41
n
23
VAL
41
A
GLN
42
n
24
GLN
42
A
LYS
43
n
25
LYS
43
A
ASN
44
n
26
ASN
44
A
LEU
45
n
27
LEU
45
A
GLY
46
n
28
GLY
46
A
ASP
47
n
29
ASP
47
A
VAL
49
n
30
VAL
49
A
VAL
50
n
31
VAL
50
A
LEU
51
n
32
LEU
51
A
PHE
52
n
33
PHE
52
A
ASP
53
n
34
ASP
53
A
ILE
54
n
35
ILE
54
A
VAL
55
n
36
VAL
55
A
LYS
56
n
37
LYS
56
A
ASN
57
n
38
ASN
57
A
MET
58
n
39
MET
58
A
PRO
59
n
40
PRO
59
A
HIS
60
n
41
HIS
60
A
GLY
61
n
42
GLY
61
A
LYS
62
n
43
LYS
62
A
ALA
63
n
44
ALA
63
A
LEU
64
n
45
LEU
64
A
ASP
65
n
46
ASP
65
A
THR
66
n
47
THR
66
A
SER
67
n
48
SER
67
A
HIS
68
n
49
HIS
68
A
THR
69
n
50
THR
69
A
ASN
70
n
51
ASN
70
A
VAL
71
n
52
VAL
71
A
MET
72
n
53
MET
72
A
ALA
73
n
54
A
ALA
73
A
TYR
73
n
55
B
TYR
73
A
SER
74
n
56
SER
74
A
ASN
75
n
57
ASN
75
A
CYS
76
n
58
CYS
76
A
LYS
77
n
59
LYS
77
A
VAL
78
n
60
VAL
78
A
SER
79
n
61
SER
79
A
GLY
80
n
62
GLY
80
A
SER
81
n
63
SER
81
A
ASN
83
n
64
ASN
83
A
THR
84
n
65
THR
84
A
TYR
85
n
66
TYR
85
A
ASP
86
n
67
ASP
86
A
ASP
87
n
68
ASP
87
A
LEU
88
n
69
LEU
88
A
ALA
89
n
70
ALA
89
A
GLY
90
n
71
GLY
90
A
ALA
91
n
72
ALA
91
A
ASP
92
n
73
ASP
92
A
VAL
93
n
74
VAL
93
A
VAL
94
n
75
VAL
94
A
ILE
95
n
76
ILE
95
A
VAL
96
n
77
VAL
96
A
THR
97
n
78
THR
97
A
ALA
98
n
79
ALA
98
A
GLY
99
n
80
GLY
99
A
PHE
100
n
81
PHE
100
A
THR
101
n
82
THR
101
A
LYS
102
n
83
LYS
102
A
n
84
103
A
n
85
104
A
n
86
105
A
n
87
106
A
n
88
A
107
A
n
89
B
107
A
n
90
C
107
A
n
91
D
107
A
n
92
E
107
A
ASN
108
n
93
ASN
108
A
ARG
109
n
94
ARG
109
A
ASP
110
n
95
ASP
110
A
ASP
111
n
96
ASP
111
A
LEU
112
n
97
LEU
112
A
LEU
113
n
98
LEU
113
A
PRO
114
n
99
PRO
114
A
LEU
115
n
100
LEU
115
A
ASN
116
n
101
ASN
116
A
ASN
117
n
102
ASN
117
A
LYS
118
n
103
LYS
118
A
ILE
119
n
104
ILE
119
A
MET
120
n
105
MET
120
A
ILE
121
n
106
ILE
121
A
GLU
122
n
107
GLU
122
A
ILE
123
n
108
ILE
123
A
GLY
124
n
109
GLY
124
A
GLY
125
n
110
GLY
125
A
HIS
126
n
111
HIS
126
A
ILE
127
n
112
ILE
127
A
LYS
128
n
113
LYS
128
A
LYS
129
n
114
LYS
129
A
ASN
130
n
115
ASN
130
A
CYS
131
n
116
CYS
131
A
PRO
132
n
117
A
PRO
132
A
ASN
132
n
118
B
ASN
132
A
ALA
133
n
119
ALA
133
A
PHE
134
n
120
PHE
134
A
ILE
135
n
121
ILE
135
A
ILE
136
n
122
ILE
136
A
VAL
137
n
123
VAL
137
A
VAL
138
n
124
VAL
138
A
THR
139
n
125
THR
139
A
ASN
140
n
126
ASN
140
A
PRO
141
n
127
PRO
141
A
VAL
142
n
128
VAL
142
A
ASP
143
n
129
ASP
143
A
VAL
144
n
130
VAL
144
A
MET
145
n
131
MET
145
A
VAL
146
n
132
VAL
146
A
GLN
147
n
133
GLN
147
A
LEU
148
n
134
LEU
148
A
LEU
149
n
135
LEU
149
A
HIS
150
n
136
HIS
150
A
GLN
151
n
137
GLN
151
A
HIS
152
n
138
HIS
152
A
SER
153
n
139
SER
153
A
GLY
154
n
140
GLY
154
A
VAL
155
n
141
VAL
155
A
PRO
156
n
142
PRO
156
A
LYS
157
n
143
LYS
157
A
ASN
158
n
144
ASN
158
A
LYS
159
n
145
LYS
159
A
ILE
160
n
146
ILE
160
A
ILE
161
n
147
ILE
161
A
GLY
162
n
148
GLY
162
A
LEU
163
n
149
LEU
163
A
GLY
164
n
150
GLY
164
A
GLY
165
n
151
GLY
165
A
VAL
166
n
152
VAL
166
A
LEU
167
n
153
LEU
167
A
ASP
168
n
154
ASP
168
A
THR
169
n
155
THR
169
A
SER
170
n
156
SER
170
A
ARG
171
n
157
ARG
171
A
LEU
172
n
158
LEU
172
A
LYS
173
n
159
LYS
173
A
TYR
174
n
160
TYR
174
A
TYR
175
n
161
TYR
175
A
ILE
176
n
162
ILE
176
A
SER
177
n
163
SER
177
A
GLN
178
n
164
GLN
178
A
LYS
179
n
165
LYS
179
A
LEU
180
n
166
LEU
180
A
ASN
181
n
167
ASN
181
A
VAL
182
n
168
VAL
182
A
CYS
183
n
169
CYS
183
A
PRO
184
n
170
PRO
184
A
ARG
185
n
171
ARG
185
A
ASP
186
n
172
ASP
186
A
VAL
187
n
173
VAL
187
A
ASN
188
n
174
ASN
188
A
ALA
189
n
175
ALA
189
A
HIS
190
n
176
HIS
190
A
ILE
191
n
177
ILE
191
A
VAL
192
n
178
VAL
192
A
GLY
193
n
179
GLY
193
A
ALA
194
n
180
ALA
194
A
HIS
195
n
181
HIS
195
A
GLY
196
n
182
GLY
196
A
ASN
197
n
183
ASN
197
A
LYS
198
n
184
LYS
198
A
MET
199
n
185
MET
199
A
VAL
200
n
186
VAL
200
A
LEU
201
n
187
LEU
201
A
LEU
202
n
188
LEU
202
A
LYS
203
n
189
LYS
203
A
ARG
204
n
190
ARG
204
A
TYR
205
n
191
TYR
205
A
ILE
206
n
192
ILE
206
A
THR
207
n
193
THR
207
A
VAL
208
n
194
VAL
208
A
GLY
209
n
195
A
GLY
209
A
GLY
209
n
196
B
GLY
209
A
ILE
209
n
197
C
ILE
209
A
PRO
209
n
198
D
PRO
209
A
LEU
210
n
199
A
LEU
210
A
GLN
210
n
200
B
GLN
210
A
GLU
211
n
201
GLU
211
A
PHE
212
n
202
PHE
212
A
ILE
213
n
203
ILE
213
A
ASN
214
n
204
ASN
214
A
ASN
215
n
205
ASN
215
A
LYS
216
n
206
LYS
216
A
LEU
218
n
207
LEU
218
A
ILE
219
n
208
ILE
219
A
SER
220
n
209
SER
220
A
ASP
221
n
210
ASP
221
A
ALA
222
n
211
ALA
222
A
GLU
223
n
212
GLU
223
A
LEU
225
n
213
LEU
225
A
GLU
226
n
214
GLU
226
A
ALA
227
n
215
ALA
227
A
ILE
228
n
216
ILE
228
A
PHE
229
n
217
PHE
229
A
ASP
230
n
218
ASP
230
A
ARG
231
n
219
ARG
231
A
THR
232
n
220
THR
232
A
VAL
233
n
221
VAL
233
A
ASN
234
n
222
ASN
234
A
THR
235
n
223
THR
235
A
ALA
236
n
224
ALA
236
A
LEU
237
n
225
LEU
237
A
GLU
238
n
226
GLU
238
A
ILE
239
n
227
ILE
239
A
VAL
240
n
228
VAL
240
A
ASN
241
n
229
ASN
241
A
LEU
242
n
230
LEU
242
A
HIS
243
n
231
HIS
243
A
ALA
244
n
232
ALA
244
A
SER
245
n
233
SER
245
A
PRO
246
n
234
PRO
246
A
TYR
247
n
235
TYR
247
A
VAL
248
n
236
VAL
248
A
ALA
249
n
237
ALA
249
A
PRO
250
n
238
PRO
250
A
ALA
251
n
239
ALA
251
A
ALA
252
n
240
ALA
252
A
ALA
253
n
241
ALA
253
A
ILE
254
n
242
ILE
254
A
ILE
255
n
243
ILE
255
A
GLU
256
n
244
GLU
256
A
MET
257
n
245
MET
257
A
ALA
258
n
246
ALA
258
A
GLU
259
n
247
GLU
259
A
SER
260
n
248
SER
260
A
TYR
261
n
249
TYR
261
A
LEU
262
n
250
LEU
262
A
LYS
263
n
251
LYS
263
A
ASP
264
n
252
ASP
264
A
LEU
265
n
253
LEU
265
A
LYS
266
n
254
LYS
266
A
LYS
267
n
255
LYS
267
A
VAL
268
n
256
VAL
268
A
LEU
269
n
257
LEU
269
A
ILE
270
n
258
ILE
270
A
CYS
271
n
259
CYS
271
A
SER
272
n
260
SER
272
A
THR
273
n
261
THR
273
A
LEU
274
n
262
LEU
274
A
LEU
275
n
263
LEU
275
A
GLU
276
n
264
GLU
276
A
GLY
277
n
265
GLY
277
A
GLN
278
n
266
GLN
278
A
TYR
279
n
267
TYR
279
A
GLY
280
n
268
GLY
280
A
HIS
281
n
269
HIS
281
A
SER
282
n
270
SER
282
A
ASP
283
n
271
ASP
283
A
ILE
285
n
272
ILE
285
A
PHE
286
n
273
PHE
286
A
GLY
287
n
274
GLY
287
A
GLY
288
n
275
GLY
288
A
THR
289
n
276
THR
289
A
PRO
290
n
277
PRO
290
A
VAL
291
n
278
VAL
291
A
VAL
292
n
279
VAL
292
A
LEU
293
n
280
LEU
293
A
GLY
294
n
281
GLY
294
A
ALA
295
n
282
ALA
295
A
ASN
296
n
283
ASN
296
A
GLY
297
n
284
GLY
297
A
VAL
298
n
285
VAL
298
A
GLU
299
n
286
GLU
299
A
GLN
301
n
287
GLN
301
A
VAL
302
n
288
VAL
302
A
ILE
303
n
289
ILE
303
A
GLU
304
n
290
GLU
304
A
LEU
305
n
291
LEU
305
A
GLN
306
n
292
GLN
306
A
LEU
307
n
293
LEU
307
A
ASN
308
n
294
ASN
308
A
SER
309
n
295
SER
309
A
GLU
310
n
296
GLU
310
A
GLU
311
n
297
GLU
311
A
LYS
312
n
298
LYS
312
A
ALA
313
n
299
ALA
313
A
LYS
314
n
300
LYS
314
A
PHE
315
n
301
PHE
315
A
ASP
316
n
302
ASP
316
A
GLU
317
n
303
GLU
317
A
ALA
318
n
304
ALA
318
A
ILE
319
n
305
ILE
319
A
ALA
320
n
306
ALA
320
A
GLU
321
n
307
GLU
321
A
THR
322
n
308
THR
322
A
LYS
323
n
309
LYS
323
A
ARG
324
n
310
ARG
324
A
MET
325
n
311
MET
325
A
LYS
326
n
312
LYS
326
A
ALA
327
n
313
ALA
327
A
LEU
328
n
314
LEU
328
A
ALA
329
n
315
ALA
329
A
HIS
330
n
316
HIS
330
A
n
317
331
A
n
318
332
A
n
319
333
A
n
320
334
A
n
321
335
A
author_and_software_defined_assembly
PISA,PQS
4
tetrameric
16910
-105
41000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-x+1,-y+1,z
crystal symmetry operation
80.0940000000
86.0960000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_655
-x+1,y,-z
crystal symmetry operation
80.0940000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_565
x,-y+1,-z
crystal symmetry operation
0.0000000000
86.0960000000
0.0000000000
A
O
SER
79
A
O
SER
61
A
N
LEU
51
A
N
LEU
32
A
O
VAL
50
A
O
VAL
31
A
N
LEU
25
A
N
LEU
8
A
N
VAL
24
A
N
VAL
7
A
O
VAL
93
A
O
VAL
74
A
N
VAL
94
A
N
VAL
75
A
O
PHE
134
A
O
PHE
120
A
N
VAL
137
A
N
VAL
123
A
O
LEU
163
A
O
LEU
149
A
N
GLY
162
A
N
GLY
148
A
O
SER
272
A
O
SER
260
A
N
LEU
275
A
N
LEU
263
A
O
ILE
285
A
O
ILE
272
A
N
VAL
292
A
N
VAL
279
A
O
GLU
299
A
O
GLU
286
A
N
ASN
188
A
N
ASN
174
A
O
THR
207
A
O
THR
193
A
N
VAL
208
A
N
VAL
194
C
A
O
ILE
209
A
O
ILE
197
A
N
VAL
192
A
N
VAL
178
A
O
VAL
200
A
O
VAL
186
1
A
CD
LYS
77
A
CD
LYS
59
0
Y
1
A
CE
LYS
77
A
CE
LYS
59
0
Y
1
A
NZ
LYS
77
A
NZ
LYS
59
0
Y
1
A
CB
LYS
102
A
CB
LYS
83
0
Y
1
A
CG
LYS
102
A
CG
LYS
83
0
Y
1
A
CD
LYS
102
A
CD
LYS
83
0
Y
1
A
CE
LYS
102
A
CE
LYS
83
0
Y
1
A
NZ
LYS
102
A
NZ
LYS
83
0
Y
1
A
CG
ARG
109
A
CG
ARG
94
0
Y
1
A
CD
ARG
109
A
CD
ARG
94
0
Y
1
A
NE
ARG
109
A
NE
ARG
94
0
Y
1
A
CZ
ARG
109
A
CZ
ARG
94
0
Y
1
A
NH1
ARG
109
A
NH1
ARG
94
0
Y
1
A
NH2
ARG
109
A
NH2
ARG
94
0
Y
1
A
CD
LYS
118
A
CD
LYS
103
0
Y
1
A
CE
LYS
118
A
CE
LYS
103
0
Y
1
A
NZ
LYS
118
A
NZ
LYS
103
0
Y
1
A
CG
LYS
129
A
CG
LYS
114
0
Y
1
A
CD
LYS
129
A
CD
LYS
114
0
Y
1
A
CE
LYS
129
A
CE
LYS
114
0
Y
1
A
NZ
LYS
129
A
NZ
LYS
114
0
Y
1
A
CE
LYS
198
A
CE
LYS
184
0
Y
1
A
NZ
LYS
198
A
NZ
LYS
184
0
Y
1
A
CD
LYS
216
A
CD
LYS
206
0
Y
1
A
CE
LYS
216
A
CE
LYS
206
0
Y
1
A
NZ
LYS
216
A
NZ
LYS
206
0
Y
1
A
CG
GLU
226
A
CG
GLU
214
0
Y
1
A
CD
GLU
226
A
CD
GLU
214
0
Y
1
A
OE1
GLU
226
A
OE1
GLU
214
0
Y
1
A
OE2
GLU
226
A
OE2
GLU
214
0
Y
1
A
ALA
103
A
ALA
84
1
Y
1
A
PRO
104
A
PRO
85
1
Y
1
A
GLY
105
A
GLY
86
1
Y
1
A
LYS
106
A
LYS
87
1
Y
A
1
A
SER
107
A
SER
88
1
Y
B
1
A
ASP
107
A
ASP
89
1
Y
C
1
A
LYS
107
A
LYS
90
1
Y
D
1
A
GLU
107
A
GLU
91
1
Y
E
1
A
TRP
107
A
TRP
92
1
Y
1
A
HIS
331
A
HIS
317
1
Y
1
A
HIS
332
A
HIS
318
1
Y
1
A
HIS
333
A
HIS
319
1
Y
1
A
HIS
334
A
HIS
320
1
Y
1
A
HIS
335
A
HIS
321
1
Y
1
A
GLU
223
10.41
1
A
ARG
109
0.278
SIDE CHAIN
1
A
A
C
N
LYS
LEU
216
218
1.60
1
A
A
C
N
GLU
LEU
223
225
1.61
1
5.55
0.90
118.30
123.85
A
A
A
CB
CG
OD2
ASP
ASP
ASP
53
53
53
N
1
5.72
0.90
118.30
124.02
A
A
A
CB
CG
OD2
ASP
ASP
ASP
86
86
86
N
1
5.66
0.90
118.30
123.96
A
A
A
CB
CG
OD2
ASP
ASP
ASP
221
221
221
N
1
A
A
C
N
GLY
VAL
33
35
0.145
0.023
1.336
1.481
Y
1
A
A
C
N
SER
ASN
81
83
0.186
0.023
1.336
1.522
Y
1
A
A
C
N
LYS
LEU
216
218
0.267
0.023
1.336
1.603
Y
1
A
A
C
N
GLU
LEU
223
225
0.270
0.023
1.336
1.606
Y
1
A
A
CB
CG
GLU
GLU
226
226
-0.189
0.019
1.517
1.328
N
1
A
A
C
N
ASP
ILE
283
285
0.177
0.023
1.336
1.513
Y
1
A
PRO
19
-56.48
3.68
1
A
ASN
57
74.28
-34.45
1
A
CYS
131
-150.76
65.66
1
A
TYR
247
-151.00
-25.19
16.842
-1.60
0.00
0.00
1.73
0.00
-0.13
0.967
0.942
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.18767
0.13578
0.13843
0.13843
2.00
29.36
1039
20360
19321
5.1
94.25
3.141
0.087
RANDOM
1
Isotropic
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
0.149
0.142
0.80
0.80
1.40
PDB model 1LDG
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.00
29.36
235
2575
18
0
2322
0.016
0.022
2338
0.002
0.020
2188
1.481
1.975
3166
0.829
3.000
5092
5.685
5.000
298
0.088
0.200
387
0.007
0.020
2539
0.007
0.020
400
0.316
0.200
556
0.240
0.200
2450
0.084
0.200
1338
0.143
0.200
190
0.171
0.200
14
0.291
0.200
83
0.127
0.200
27
0.770
1.500
1513
1.336
2.000
2431
2.325
3.000
825
3.760
4.500
735
0.255
0.184
2.055
55
1045
20
2.00
30.00
1U4S
19866
19866
2.0
2.0
0.055
1
13.6
6.0
90.9
2.00
2.15
4.1
3421
0.174
1
2
79.5
refinement
REFMAC
5.1.24
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
Plasmodium falciparum lactate dehydrogenase complexed with 2,6-naphthalenedisulphonic acid
1
N
N
2
N
N
3
N
N
The biological assembly is a tetramer generated from the monomer in the asymmetric unit by the following operations and lattice translations:
x,-y,-z/1,0,0
-x,y,-z/0,1,0
-x,-y,z/1,1,0
A
GLY
29
A
GLY
12
HELX_P
A
LYS
43
A
LYS
25
1
1
14
A
ASN
57
A
ASN
38
HELX_P
A
HIS
68
A
HIS
49
1
2
12
A
HIS
68
A
HIS
49
HELX_P
A
TYR
73
A
TYR
55
1
3
7
B
A
THR
84
A
THR
65
HELX_P
A
ALA
89
A
ALA
70
5
4
6
A
ASN
108
A
ASN
93
HELX_P
A
ASP
111
A
ASP
96
5
5
4
A
LEU
112
A
LEU
97
HELX_P
A
CYS
131
A
CYS
116
1
6
20
A
PRO
141
A
PRO
127
HELX_P
A
GLY
154
A
GLY
140
1
7
14
A
PRO
156
A
PRO
142
HELX_P
A
ASN
158
A
ASN
144
5
8
3
A
GLY
164
A
GLY
150
HELX_P
A
ASN
181
A
ASN
167
1
9
18
A
CYS
183
A
CYS
169
HELX_P
A
ARG
185
A
ARG
171
5
10
3
A
LYS
203
A
LYS
189
HELX_P
A
TYR
205
A
TYR
191
5
11
3
A
LEU
210
A
LEU
199
HELX_P
A
ASN
215
A
ASN
205
1
12
7
A
A
SER
220
A
SER
209
HELX_P
A
ASN
234
A
ASN
222
1
13
14
A
ASN
234
A
ASN
222
HELX_P
A
LEU
242
A
LEU
230
1
14
9
A
TYR
247
A
TYR
235
HELX_P
A
LYS
263
A
LYS
251
1
15
17
A
GLN
278
A
GLN
266
HELX_P
A
GLY
280
A
GLY
268
5
16
3
A
ASN
308
A
ASN
294
HELX_P
A
HIS
330
A
HIS
316
1
17
23
OXIDOREDUCTASE
Protein-ligand complex, OXIDOREDUCTASE
A
ASN
140
A
ASN
126
1
A
PRO
141
A
PRO
127
-2.12
LDH1_PLAFD
UNP
1
2
Q27743
APKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG
FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKY
YISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHASPYVAPAA
AIIEMAESYLKDLKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKALA
2
316
1U4S
18
329
Q27743
A
1
1
315
1
expression tag
HIS
330
1U4S
A
Q27743
UNP
316
1
expression tag
HIS
331
1U4S
A
Q27743
UNP
317
1
expression tag
HIS
332
1U4S
A
Q27743
UNP
318
1
expression tag
HIS
333
1U4S
A
Q27743
UNP
319
1
expression tag
HIS
334
1U4S
A
Q27743
UNP
320
1
expression tag
HIS
335
1U4S
A
Q27743
UNP
321
9
3
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
78
A
VAL
60
A
SER
81
A
SER
63
A
ASP
47
A
ASP
29
A
PHE
52
A
PHE
33
A
LYS
22
A
LYS
5
A
VAL
26
A
VAL
9
A
VAL
93
A
VAL
74
A
VAL
96
A
VAL
77
A
PHE
134
A
PHE
120
A
VAL
137
A
VAL
123
A
ILE
160
A
ILE
146
A
LEU
163
A
LEU
149
A
LYS
267
A
LYS
255
A
GLU
276
A
GLU
264
A
SER
282
A
SER
270
A
GLY
294
A
GLY
281
A
GLY
297
A
GLY
284
A
VAL
302
A
VAL
288
A
VAL
187
A
VAL
173
A
ASN
188
A
ASN
174
A
THR
207
A
THR
193
A
VAL
208
A
VAL
194
A
ILE
209
A
ILE
197
A
PRO
209
A
PRO
198
C
D
A
ILE
191
A
ILE
177
A
VAL
192
A
VAL
178
A
VAL
200
A
VAL
186
A
LEU
201
A
LEU
187
BINDING SITE FOR RESIDUE BIH A 336
A
BIH
336
Software
10
A
ASN
140
A
ASN
126
10
1_555
A
LEU
167
A
LEU
153
10
1_555
A
ARG
171
A
ARG
157
10
1_555
A
HIS
195
A
HIS
181
10
1_555
A
ALA
236
A
ALA
224
10
1_555
A
PRO
246
A
PRO
234
10
1_555
A
PRO
250
A
PRO
238
10
1_555
A
HOH
502
C
HOH
10
1_555
A
HOH
511
C
HOH
10
1_555
A
HOH
553
C
HOH
10
1_555
23
I 2 2 2