1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 O'Leary, J.M. Hamilton, J.m. Deane, C.M. Valeyev, N.V. Sandell, L.J. Downing, A.K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 279 53857 53866 10.1074/jbc.M409225200 15466413 Solution structure and dynamics of a prototypical chordin-like cysteine-rich repeat (von Willebrand Factor type C module) from collagen IIA 2004 US PROTEIN EXPR.PURIF. PEXPEJ 0757 1096-0279 Identification and removal of O-linked and non-covalently linked sugars from recombinant protein produced using Pichia pastoris 2004 10.2210/pdb1u5m/pdb pdb_00001u5m 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 7981.009 alpha 1 type II collagen isoform 1 Exon2 T67A, T71A, S73A 1 man polymer collagen II, alpha-1 polypeptide; cartilage collagen; chondrocalcin, included; COL11A3, formerly no no YVEFQEAGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPADLAAAA YVEFQEAGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPADLAAAA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Pichia sample COL2A1 9606 Homo sapiens 4922 Pichia pastoris GS115 plasmid pPICK9K-CRcolIIA database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2004-10-05 1 1 2008-04-30 1 2 2011-07-13 1 3 2021-10-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details Pair of fibronectin type I domains RCSB Y RCSB 2004-07-28 REL REL Sequential assignments were made using triple resonance techniques. Disulfide bond connectivity was determined using NOESY data acquired at different temperatures. target function 600 20 3D_15N-separated_NOESY HMQC-J 2D NOESY 50 mM potassium phosphate 6.0 ambient 298 K semi-automated assignment and torsion angle dynamics 1,2 closest to the average 0.8mM U-15N exon2; 50mM phosphate buffer; 0.02% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O 0.8mM U-15N exon2; 50mM phosphate buffer; 0.02% NaN3; 99.9% D2O 99.9% D2O 0.8mM U-15N,13C exon2; 50mM phosphate buffer; 0.02% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O Guntert, P. structure solution CYANA 1.0.6 Guntert, P. refinement CYANA 1.0.6 600 GE OMEGA 750 GE OMEGA TYR 1 n 1 TYR 1 A VAL 2 n 2 VAL 2 A GLU 3 n 3 GLU 3 A PHE 4 n 4 PHE 4 A GLN 5 n 5 GLN 5 A GLU 6 n 6 GLU 6 A ALA 7 n 7 ALA 7 A GLY 8 n 8 GLY 8 A SER 9 n 9 SER 9 A CYS 10 n 10 CYS 10 A VAL 11 n 11 VAL 11 A GLN 12 n 12 GLN 12 A ASP 13 n 13 ASP 13 A GLY 14 n 14 GLY 14 A GLN 15 n 15 GLN 15 A ARG 16 n 16 ARG 16 A TYR 17 n 17 TYR 17 A ASN 18 n 18 ASN 18 A ASP 19 n 19 ASP 19 A LYS 20 n 20 LYS 20 A ASP 21 n 21 ASP 21 A VAL 22 n 22 VAL 22 A TRP 23 n 23 TRP 23 A LYS 24 n 24 LYS 24 A PRO 25 n 25 PRO 25 A GLU 26 n 26 GLU 26 A PRO 27 n 27 PRO 27 A CYS 28 n 28 CYS 28 A ARG 29 n 29 ARG 29 A ILE 30 n 30 ILE 30 A CYS 31 n 31 CYS 31 A VAL 32 n 32 VAL 32 A CYS 33 n 33 CYS 33 A ASP 34 n 34 ASP 34 A THR 35 n 35 THR 35 A GLY 36 n 36 GLY 36 A THR 37 n 37 THR 37 A VAL 38 n 38 VAL 38 A LEU 39 n 39 LEU 39 A CYS 40 n 40 CYS 40 A ASP 41 n 41 ASP 41 A ASP 42 n 42 ASP 42 A ILE 43 n 43 ILE 43 A ILE 44 n 44 ILE 44 A CYS 45 n 45 CYS 45 A GLU 46 n 46 GLU 46 A ASP 47 n 47 ASP 47 A VAL 48 n 48 VAL 48 A LYS 49 n 49 LYS 49 A ASP 50 n 50 ASP 50 A CYS 51 n 51 CYS 51 A LEU 52 n 52 LEU 52 A SER 53 n 53 SER 53 A PRO 54 n 54 PRO 54 A GLU 55 n 55 GLU 55 A ILE 56 n 56 ILE 56 A PRO 57 n 57 PRO 57 A PHE 58 n 58 PHE 58 A GLY 59 n 59 GLY 59 A GLU 60 n 60 GLU 60 A CYS 61 n 61 CYS 61 A CYS 62 n 62 CYS 62 A PRO 63 n 63 PRO 63 A ILE 64 n 64 ILE 64 A CYS 65 n 65 CYS 65 A PRO 66 n 66 PRO 66 A ALA 67 n 67 ALA 67 A ASP 68 n 68 ASP 68 A LEU 69 n 69 LEU 69 A ALA 70 n 70 ALA 70 A ALA 71 n 71 ALA 71 A ALA 72 n 72 ALA 72 A ALA 73 n 73 ALA 73 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 10 A N CYS 10 A O TYR 17 A O TYR 17 A N TRP 23 A N TRP 23 A O CYS 31 A O CYS 31 A N VAL 32 A N VAL 32 A O LEU 39 A O LEU 39 4 A A H O ASP THR 34 37 1.52 5 A A H O ASP THR 34 37 1.59 6 A A H O ASP THR 34 37 1.51 7 A A H O ASP THR 34 37 1.54 9 A A H O ASP THR 34 37 1.54 9 A A H OD1 ASN ASP 18 21 1.58 10 A A O HE2 GLY GLU 59 60 1.54 10 A A H O ASP THR 34 37 1.56 16 A A H O ASP THR 34 37 1.52 20 A A OE1 HE2 GLU GLU 46 60 1.55 20 A A H OD2 ASN ASP 18 21 1.55 1 A GLU 3 49.85 86.89 1 A ALA 7 60.87 150.02 1 A ASP 47 177.92 -161.64 1 A LYS 49 -114.08 -78.07 1 A CYS 51 44.25 -153.17 1 A LEU 52 -137.08 -71.14 1 A PHE 58 56.26 -95.82 1 A GLU 60 -128.58 -147.66 1 A ASP 68 -174.86 -50.88 1 A ALA 70 60.52 74.96 2 A SER 9 179.98 153.99 2 A ASN 18 -54.70 -170.43 2 A CYS 28 -169.22 -36.95 2 A ASP 50 166.77 -33.28 2 A CYS 51 64.51 166.23 2 A LEU 52 -49.46 -96.74 2 A PHE 58 36.31 44.59 2 A GLU 60 -137.55 -77.57 2 A CYS 61 -178.28 -38.03 2 A ALA 67 -68.34 -150.96 2 A ALA 70 56.59 173.91 2 A ALA 72 74.94 -59.92 3 A VAL 2 -173.32 134.54 3 A ASN 18 -59.80 -177.86 3 A ILE 43 -69.31 98.95 3 A GLU 46 -56.47 105.81 3 A VAL 48 65.00 140.80 3 A LYS 49 -94.75 46.45 3 A ASP 50 -145.49 27.49 3 A LEU 52 -69.81 -90.11 3 A PHE 58 36.85 43.80 3 A GLU 60 -136.22 -135.62 3 A ALA 67 -145.33 53.19 3 A ASP 68 -161.87 49.09 3 A ALA 71 -163.52 -62.37 4 A GLU 3 -145.12 -60.26 4 A PHE 4 50.24 90.52 4 A ASN 18 -56.15 175.58 4 A ASP 47 -168.45 33.39 4 A LYS 49 -111.12 -77.62 4 A ASP 50 -147.73 55.45 4 A CYS 51 -48.37 163.25 4 A LEU 52 -50.26 -76.27 4 A GLU 60 -141.35 -149.76 4 A ALA 67 -101.90 75.94 4 A ASP 68 -154.83 -49.25 5 A PHE 4 51.13 94.09 5 A SER 9 62.72 157.24 5 A ASP 47 -152.79 89.09 5 A VAL 48 66.35 149.34 5 A PHE 58 36.66 40.27 5 A GLU 60 -135.23 -139.87 5 A ALA 67 68.51 -68.86 5 A ASP 68 -179.63 56.91 5 A LEU 69 56.03 178.48 5 A ALA 70 -103.15 61.34 5 A ALA 72 -163.52 -61.40 6 A GLU 3 68.41 166.69 6 A GLN 5 66.66 130.48 6 A ALA 7 63.07 93.13 6 A SER 9 63.34 167.08 6 A ASN 18 -56.10 -175.52 6 A ASP 21 -38.35 155.79 6 A THR 35 55.91 17.89 6 A ASP 47 -164.01 30.55 6 A ASP 50 -148.04 49.80 6 A LEU 52 -135.63 -48.95 6 A GLU 60 -134.91 -144.21 6 A ASP 68 52.95 77.55 7 A VAL 2 -163.82 -43.96 7 A GLU 3 -40.58 155.45 7 A GLU 6 60.03 164.78 7 A ASN 18 -53.93 -172.27 7 A ASP 21 -39.96 157.86 7 A ASP 47 -165.58 40.98 7 A LYS 49 -134.47 -61.72 7 A LEU 52 -152.60 -47.97 7 A PHE 58 39.95 83.12 7 A ALA 67 66.97 -72.13 7 A ASP 68 -178.53 60.23 7 A ALA 70 54.86 78.33 7 A ALA 72 -177.90 133.29 8 A GLU 6 61.24 114.31 8 A ASP 50 39.87 53.78 8 A LEU 52 -40.72 -83.07 8 A PHE 58 41.09 84.43 8 A ASP 68 -177.62 37.31 8 A ALA 71 45.04 90.76 8 A ALA 72 51.60 81.00 9 A GLU 3 66.81 83.77 9 A PHE 4 -167.12 91.80 9 A ASN 18 -54.47 -175.05 9 A ASP 21 -36.50 143.01 9 A VAL 48 -93.22 -103.10 9 A LYS 49 -156.57 -86.35 9 A LEU 52 -45.58 -89.35 9 A PHE 58 42.75 84.83 9 A PRO 66 -74.97 -169.80 9 A ALA 67 -94.44 46.76 9 A LEU 69 -40.39 159.54 9 A ALA 71 -57.87 -73.28 10 A THR 35 38.08 76.04 10 A LYS 49 -142.51 -69.79 10 A LEU 52 -73.93 -88.34 10 A GLU 60 -145.35 -150.43 10 A ALA 67 -49.87 95.62 10 A ASP 68 172.23 -43.14 10 A LEU 69 39.58 52.50 10 A ALA 72 179.51 -58.49 11 A PHE 4 49.98 92.97 11 A ALA 7 -145.69 -62.58 11 A ASN 18 -54.56 -170.69 11 A CYS 28 -169.46 -36.66 11 A CYS 33 -68.70 70.63 11 A ASP 50 170.44 -34.28 11 A CYS 51 58.56 163.05 11 A LEU 52 -39.65 -86.68 11 A PHE 58 35.72 40.69 11 A GLU 60 -134.70 -75.84 11 A CYS 61 -179.51 -38.22 11 A ASP 68 -156.90 83.84 11 A LEU 69 39.66 83.99 11 A ALA 71 -105.29 -60.10 12 A ASN 18 -75.34 -164.97 12 A CYS 28 -169.40 -36.58 12 A ASP 50 86.36 -45.36 12 A CYS 51 60.99 -162.01 12 A PHE 58 36.40 40.12 12 A GLU 60 -134.21 -76.13 12 A CYS 61 -178.87 -38.71 12 A PRO 66 -75.08 -168.68 12 A ALA 70 41.87 79.67 12 A ALA 72 60.74 150.48 13 A VAL 2 56.43 96.05 13 A GLU 3 -165.28 96.00 13 A GLU 6 -117.62 71.45 13 A ALA 7 -174.48 103.50 13 A SER 9 62.71 103.02 13 A ASN 18 -61.54 -172.99 13 A ASP 21 -50.67 103.30 13 A CYS 28 -169.76 -36.79 13 A CYS 33 -108.28 66.77 13 A LYS 49 -96.99 40.88 13 A ASP 50 -144.53 39.83 13 A LEU 52 -78.66 -86.35 13 A PHE 58 35.43 41.83 13 A GLU 60 -135.02 -75.64 13 A CYS 61 -178.57 -38.56 13 A ALA 70 58.99 158.85 13 A ALA 71 -175.04 68.76 14 A GLU 3 170.58 143.12 14 A PHE 4 -128.65 -51.83 14 A GLN 5 58.26 159.94 14 A ALA 7 -172.64 -60.64 14 A ASN 18 -52.69 -175.34 14 A CYS 28 -169.52 -37.25 14 A VAL 48 -46.35 165.88 14 A LYS 49 -126.25 -67.49 14 A ASP 50 -154.03 55.14 14 A LEU 52 -93.69 -68.09 14 A PHE 58 35.01 45.01 14 A GLU 60 -138.04 -74.28 14 A CYS 61 178.73 -37.45 14 A ALA 67 -111.74 69.49 14 A ASP 68 -147.54 -50.73 14 A ALA 72 59.69 84.46 15 A VAL 2 -42.74 154.72 15 A GLU 3 58.36 113.23 15 A GLU 6 65.08 117.57 15 A ALA 7 -176.26 123.07 15 A ASN 18 -60.69 -159.89 15 A CYS 28 -169.51 -36.54 15 A VAL 48 -130.91 -106.27 15 A LYS 49 -159.68 -73.82 15 A CYS 51 -67.65 -164.69 15 A LEU 52 -96.94 -66.39 15 A PHE 58 33.69 40.67 15 A GLU 60 -134.62 -76.03 15 A CYS 61 -178.32 -38.62 15 A ALA 67 -74.96 -157.84 15 A ALA 70 57.11 101.76 15 A ALA 72 64.01 169.15 16 A PHE 4 -48.33 156.98 16 A SER 9 -51.43 172.07 16 A ASN 18 -47.58 172.51 16 A CYS 28 -169.72 -36.05 16 A PHE 58 35.35 39.92 16 A GLU 60 -133.59 -76.29 16 A CYS 61 -178.38 -38.63 16 A ALA 67 -52.83 -98.00 16 A LEU 69 -160.38 89.82 16 A ALA 70 57.90 91.92 17 A VAL 2 -142.42 -47.27 17 A GLU 3 -63.48 89.65 17 A GLN 5 81.27 -51.67 17 A GLU 6 63.51 151.61 17 A ALA 7 -49.78 171.97 17 A SER 9 175.08 149.75 17 A ASN 18 -71.39 -161.26 17 A CYS 28 -169.24 -37.11 17 A CYS 33 -69.84 67.20 17 A CYS 51 -57.33 -163.71 17 A PHE 58 35.19 42.10 17 A GLU 60 -135.84 -72.15 17 A CYS 61 179.76 -37.79 17 A ALA 70 172.61 168.06 17 A ALA 71 56.02 100.06 18 A GLU 3 -174.29 100.00 18 A GLN 5 58.78 161.14 18 A ALA 7 -50.11 102.30 18 A SER 9 62.02 170.89 18 A ASN 18 -52.07 -176.80 18 A ASP 21 -53.48 104.20 18 A CYS 28 -169.97 -36.14 18 A ASP 47 175.73 -176.31 18 A LYS 49 -92.11 45.69 18 A ASP 50 -149.89 52.93 18 A LEU 52 -60.17 -85.47 18 A PHE 58 35.70 43.64 18 A GLU 60 -136.42 -76.94 18 A CYS 61 -178.96 -37.36 18 A ASP 68 169.84 79.99 18 A LEU 69 63.59 -80.68 18 A ALA 70 -162.47 111.51 18 A ALA 71 62.06 177.36 19 A VAL 2 -176.10 -39.78 19 A ASN 18 -79.49 -169.80 19 A CYS 28 -169.79 -36.32 19 A CYS 51 -64.36 -153.09 19 A LEU 52 -148.89 -65.55 19 A PHE 58 35.20 43.89 19 A GLU 60 -135.79 -75.75 19 A CYS 61 -179.32 -36.60 19 A ASP 68 174.80 85.74 19 A LEU 69 52.03 -179.25 20 A GLU 3 -171.76 120.14 20 A GLU 6 60.05 153.74 20 A ALA 7 -161.59 91.52 20 A ASN 18 -58.24 -161.54 20 A CYS 28 -169.53 -36.52 20 A ASP 47 -109.61 -166.15 20 A VAL 48 68.65 106.93 20 A ASP 50 -149.46 41.68 20 A LEU 52 -40.35 -75.70 20 A PHE 58 33.56 42.03 20 A GLU 60 -135.77 -74.54 20 A CYS 61 -179.49 -38.27 20 A ALA 67 -166.94 97.53 20 A ASP 68 -139.11 -47.85 Structure of a Chordin-like Cysteine-rich Repeat (VWC module) from Collagen IIA 1 N N disulf 1.999 A CYS 10 A SG CYS 10 1_555 A CYS 33 A SG CYS 33 1_555 disulf 1.991 A CYS 28 A SG CYS 28 1_555 A CYS 61 A SG CYS 61 1_555 disulf 1.998 A CYS 31 A SG CYS 31 1_555 A CYS 40 A SG CYS 40 1_555 disulf 2.054 A CYS 45 A SG CYS 45 1_555 A CYS 62 A SG CYS 62 1_555 disulf 2.145 A CYS 51 A SG CYS 51 1_555 A CYS 65 A SG CYS 65 1_555 STRUCTURAL PROTEIN 5 disulfide bonds, two sub-domain architecture, beta-sheet, STRUCTURAL PROTEIN CO2A1_HUMAN UNP 1 25 P02458 GQDVQEAGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPTDLATAS 25 97 1U5M 1 73 P02458 A 1 1 73 1 GLY cloning artifact TYR 1 1U5M A P02458 UNP 25 1 1 GLN cloning artifact VAL 2 1U5M A P02458 UNP 26 2 1 ASP cloning artifact GLU 3 1U5M A P02458 UNP 27 3 1 VAL cloning artifact PHE 4 1U5M A P02458 UNP 28 4 1 THR engineered mutation ALA 67 1U5M A P02458 UNP 91 67 1 THR engineered mutation ALA 71 1U5M A P02458 UNP 95 71 1 SER engineered mutation ALA 73 1U5M A P02458 UNP 97 73 2 3 anti-parallel anti-parallel anti-parallel A CYS 10 A CYS 10 A VAL 11 A VAL 11 A ARG 16 A ARG 16 A TYR 17 A TYR 17 A VAL 22 A VAL 22 A TRP 23 A TRP 23 A ARG 29 A ARG 29 A ASP 34 A ASP 34 A THR 37 A THR 37 A ASP 42 A ASP 42