.017123 .000000 .000000 .000000 .015385 .000000 .000000 .000000 .005695 .00000 .00000 .00000 Bryson, S. Julien, J.-P. Hynes, R.C. Pai, E.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 58.400 65.000 175.600 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Virol. JOVIAM 0825 0022-538X 83 11862 11875 10.1128/JVI.01604-09 19740978 Crystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: vaccine design implications 2009 1.000000 .000000 .000000 .000000 1.000000 .000000 .000000 .000000 1.000000 .00000 .00000 .00000 100 1 IMAGE PLATE 1999-07-14 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE RIGAKU 23363.844 ANTIBODY 2F5 (LIGHT CHAIN) 1 nat polymer 24969.438 ANTIBODY 2F5 (HEAVY CHAIN) 1 nat polymer 825.884 GP41 PEPTIDE 1 syn polymer 18.015 water 182 nat water no no ALQLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRP EDFATYYCQQLHFYPHTFGGGTRVDVRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYECEVTHQGLSSPVTKSFNRGEC ALQLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRP EDFATYYCQQLHFYPHTFGGGTRVDVRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYECEVTHQGLSSPVTKSFNRGEC A polypeptide(L) no no RITLKESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQV VLVMTRVSPVDTATYFCAHRRGPTTLFGVPIARGPVNAMDVWGQGITVTISSTSTKGPSVFPLAPSSKSTAGAAAALGCL VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYTCNVNHKPSNTKVDKRVEPKSC RITLKESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQV VLVMTRVSPVDTATYFCAHRRGPTTLFGVPIARGPVNAMDVWGQGITVTISSTSTKGPSVFPLAPSSKSTAGAAAALGCL VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYTCNVNHKPSNTKVDKRVEPKSC B polypeptide(L) no no ELDKYAS ELDKYAS C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens human Homo sample 9606 Homo sapiens 1 3.02 60 VAPOR DIFFUSION, HANGING DROP 5.6 sodium citrate, ammonium sulphate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 repository Initial release Version format compliance Version format compliance 1 0 2004-10-05 1 1 2008-04-30 1 2 2011-07-13 the same protein complexed with gp41 Peptide ALDKWAS the same protein complexed with gp41 Peptide ELDKWAN the same protein complexed with gp41 Peptide ELDKWAG the same protein complexed with gp41 Peptide LELDKWASL the same protein complexed with gp41 Peptide DLDRWAS the same protein complexed with gp41 Peptide ELDKFAS the same protein complexed with gp41 Peptide ELDKHAS the same protein complexed with gp41 Peptide ECDKWCS the same protein complexed with gp41 Peptide ELEKWAS the same protein complexed with gp41 Peptide Analog ENDKW-[Dap]-S(cyclic) the same protein complexed with gp41 Peptide Analog E-[Dap]-DKWQS(cyclic) the same protein complexed with gp41 Peptide Analog EQDKW-[Dap]-S(cyclic) the same protein complexed with gp41 Peptide ELDHWAS RCSB Y PDBJ 2004-08-06 REL REL HOH water SYNTHETIC PEPTIDE 11676 Human immunodeficiency virus 1 sample WAT 1 4 HOH HOH 215 A WAT 2 4 HOH HOH 216 A WAT 8 4 HOH HOH 217 A WAT 9 4 HOH HOH 218 A WAT 12 4 HOH HOH 219 A WAT 13 4 HOH HOH 220 A WAT 17 4 HOH HOH 221 A WAT 18 4 HOH HOH 222 A WAT 23 4 HOH HOH 223 A WAT 25 4 HOH HOH 224 A WAT 26 4 HOH HOH 225 A WAT 29 4 HOH HOH 226 A WAT 32 4 HOH HOH 227 A WAT 35 4 HOH HOH 228 A WAT 36 4 HOH HOH 229 A WAT 37 4 HOH HOH 230 A WAT 41 4 HOH HOH 231 A WAT 43 4 HOH HOH 232 A WAT 44 4 HOH HOH 233 A WAT 45 4 HOH HOH 234 A WAT 48 4 HOH HOH 235 A WAT 50 4 HOH HOH 236 A WAT 52 4 HOH HOH 237 A WAT 54 4 HOH HOH 238 A WAT 55 4 HOH HOH 239 A WAT 56 4 HOH HOH 240 A WAT 57 4 HOH HOH 241 A WAT 58 4 HOH HOH 242 A WAT 60 4 HOH HOH 243 A WAT 61 4 HOH HOH 244 A WAT 62 4 HOH HOH 245 A WAT 66 4 HOH HOH 246 A WAT 71 4 HOH HOH 247 A WAT 72 4 HOH HOH 248 A WAT 74 4 HOH HOH 249 A WAT 81 4 HOH HOH 250 A WAT 88 4 HOH HOH 251 A WAT 90 4 HOH HOH 252 A WAT 91 4 HOH HOH 253 A WAT 92 4 HOH HOH 254 A WAT 93 4 HOH HOH 255 A WAT 96 4 HOH HOH 256 A WAT 102 4 HOH HOH 257 A WAT 103 4 HOH HOH 258 A WAT 104 4 HOH HOH 259 A WAT 105 4 HOH HOH 260 A WAT 108 4 HOH HOH 261 A WAT 110 4 HOH HOH 262 A WAT 113 4 HOH HOH 263 A WAT 116 4 HOH HOH 264 A WAT 120 4 HOH HOH 265 A WAT 121 4 HOH HOH 266 A WAT 122 4 HOH HOH 267 A WAT 123 4 HOH HOH 268 A WAT 126 4 HOH HOH 269 A WAT 127 4 HOH HOH 270 A WAT 128 4 HOH HOH 271 A WAT 129 4 HOH HOH 272 A WAT 131 4 HOH HOH 273 A WAT 132 4 HOH HOH 274 A WAT 133 4 HOH HOH 275 A WAT 135 4 HOH HOH 276 A WAT 136 4 HOH HOH 277 A WAT 137 4 HOH HOH 278 A WAT 140 4 HOH HOH 279 A WAT 141 4 HOH HOH 280 A WAT 142 4 HOH HOH 281 A WAT 144 4 HOH HOH 282 A WAT 145 4 HOH HOH 283 A WAT 149 4 HOH HOH 284 A WAT 150 4 HOH HOH 285 A WAT 151 4 HOH HOH 286 A WAT 153 4 HOH HOH 287 A WAT 156 4 HOH HOH 288 A WAT 157 4 HOH HOH 289 A WAT 158 4 HOH HOH 290 A WAT 159 4 HOH HOH 291 A WAT 160 4 HOH HOH 292 A WAT 161 4 HOH HOH 293 A WAT 162 4 HOH HOH 294 A WAT 165 4 HOH HOH 295 A WAT 167 4 HOH HOH 296 A WAT 169 4 HOH HOH 297 A WAT 171 4 HOH HOH 298 A WAT 176 4 HOH HOH 299 A WAT 177 4 HOH HOH 300 A WAT 179 4 HOH HOH 301 A WAT 180 4 HOH HOH 302 A WAT 3 4 HOH HOH 217 B WAT 4 4 HOH HOH 218 B WAT 5 4 HOH HOH 219 B WAT 6 4 HOH HOH 220 B WAT 7 4 HOH HOH 221 B WAT 10 4 HOH HOH 222 B WAT 11 4 HOH HOH 223 B WAT 14 4 HOH HOH 224 B WAT 15 4 HOH HOH 225 B WAT 16 4 HOH HOH 226 B WAT 19 4 HOH HOH 227 B WAT 20 4 HOH HOH 228 B WAT 21 4 HOH HOH 229 B WAT 22 4 HOH HOH 230 B WAT 24 4 HOH HOH 231 B WAT 27 4 HOH HOH 232 B WAT 28 4 HOH HOH 233 B WAT 30 4 HOH HOH 234 B WAT 33 4 HOH HOH 235 B WAT 34 4 HOH HOH 236 B WAT 38 4 HOH HOH 237 B WAT 39 4 HOH HOH 238 B WAT 40 4 HOH HOH 239 B WAT 42 4 HOH HOH 240 B WAT 46 4 HOH HOH 241 B WAT 47 4 HOH HOH 242 B WAT 49 4 HOH HOH 243 B WAT 51 4 HOH HOH 244 B WAT 53 4 HOH HOH 245 B WAT 59 4 HOH HOH 246 B WAT 63 4 HOH HOH 247 B WAT 64 4 HOH HOH 248 B WAT 65 4 HOH HOH 249 B WAT 67 4 HOH HOH 250 B WAT 68 4 HOH HOH 251 B WAT 69 4 HOH HOH 252 B WAT 70 4 HOH HOH 253 B WAT 73 4 HOH HOH 254 B WAT 75 4 HOH HOH 255 B WAT 76 4 HOH HOH 256 B WAT 77 4 HOH HOH 257 B WAT 78 4 HOH HOH 258 B WAT 79 4 HOH HOH 259 B WAT 80 4 HOH HOH 260 B WAT 82 4 HOH HOH 261 B WAT 83 4 HOH HOH 262 B WAT 85 4 HOH HOH 263 B WAT 86 4 HOH HOH 264 B WAT 87 4 HOH HOH 265 B WAT 94 4 HOH HOH 266 B WAT 95 4 HOH HOH 267 B WAT 97 4 HOH HOH 268 B WAT 98 4 HOH HOH 269 B WAT 99 4 HOH HOH 270 B WAT 100 4 HOH HOH 271 B WAT 101 4 HOH HOH 272 B WAT 106 4 HOH HOH 273 B WAT 107 4 HOH HOH 274 B WAT 109 4 HOH HOH 275 B WAT 111 4 HOH HOH 276 B WAT 112 4 HOH HOH 277 B WAT 114 4 HOH HOH 278 B WAT 115 4 HOH HOH 279 B WAT 117 4 HOH HOH 280 B WAT 118 4 HOH HOH 281 B WAT 119 4 HOH HOH 282 B WAT 124 4 HOH HOH 283 B WAT 125 4 HOH HOH 284 B WAT 130 4 HOH HOH 285 B WAT 134 4 HOH HOH 286 B WAT 138 4 HOH HOH 287 B WAT 139 4 HOH HOH 288 B WAT 143 4 HOH HOH 289 B WAT 146 4 HOH HOH 290 B WAT 147 4 HOH HOH 291 B WAT 148 4 HOH HOH 292 B WAT 152 4 HOH HOH 293 B WAT 154 4 HOH HOH 294 B WAT 155 4 HOH HOH 295 B WAT 163 4 HOH HOH 296 B WAT 166 4 HOH HOH 297 B WAT 168 4 HOH HOH 298 B WAT 170 4 HOH HOH 299 B WAT 172 4 HOH HOH 300 B WAT 173 4 HOH HOH 301 B WAT 174 4 HOH HOH 302 B WAT 178 4 HOH HOH 303 B WAT 181 4 HOH HOH 304 B WAT 183 4 HOH HOH 305 B WAT 31 4 HOH HOH 31 C WAT 84 4 HOH HOH 84 C WAT 89 4 HOH HOH 89 C WAT 175 4 HOH HOH 175 C WAT 182 4 HOH HOH 182 C ALA 1 n 1 ALA 1 A LEU 2 n 2 LEU 2 A GLN 3 n 3 GLN 3 A LEU 4 n 4 LEU 4 A THR 5 n 5 THR 5 A GLN 6 n 6 GLN 6 A SER 7 n 7 SER 7 A PRO 8 n 8 PRO 8 A SER 9 n 9 SER 9 A SER 10 n 10 SER 10 A LEU 11 n 11 LEU 11 A SER 12 n 12 SER 12 A ALA 13 n 13 ALA 13 A SER 14 n 14 SER 14 A VAL 15 n 15 VAL 15 A GLY 16 n 16 GLY 16 A ASP 17 n 17 ASP 17 A ARG 18 n 18 ARG 18 A ILE 19 n 19 ILE 19 A THR 20 n 20 THR 20 A ILE 21 n 21 ILE 21 A THR 22 n 22 THR 22 A CYS 23 n 23 CYS 23 A ARG 24 n 24 ARG 24 A ALA 25 n 25 ALA 25 A SER 26 n 26 SER 26 A GLN 27 n 27 GLN 27 A GLY 28 n 28 GLY 28 A VAL 29 n 29 VAL 29 A THR 30 n 30 THR 30 A SER 31 n 31 SER 31 A ALA 32 n 32 ALA 32 A LEU 33 n 33 LEU 33 A ALA 34 n 34 ALA 34 A TRP 35 n 35 TRP 35 A TYR 36 n 36 TYR 36 A ARG 37 n 37 ARG 37 A GLN 38 n 38 GLN 38 A LYS 39 n 39 LYS 39 A PRO 40 n 40 PRO 40 A GLY 41 n 41 GLY 41 A SER 42 n 42 SER 42 A PRO 43 n 43 PRO 43 A PRO 44 n 44 PRO 44 A GLN 45 n 45 GLN 45 A LEU 46 n 46 LEU 46 A LEU 47 n 47 LEU 47 A ILE 48 n 48 ILE 48 A TYR 49 n 49 TYR 49 A ASP 50 n 50 ASP 50 A ALA 51 n 51 ALA 51 A SER 52 n 52 SER 52 A SER 53 n 53 SER 53 A LEU 54 n 54 LEU 54 A GLU 55 n 55 GLU 55 A SER 56 n 56 SER 56 A GLY 57 n 57 GLY 57 A VAL 58 n 58 VAL 58 A PRO 59 n 59 PRO 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A PHE 62 n 62 PHE 62 A SER 63 n 63 SER 63 A GLY 64 n 64 GLY 64 A SER 65 n 65 SER 65 A GLY 66 n 66 GLY 66 A SER 67 n 67 SER 67 A GLY 68 n 68 GLY 68 A THR 69 n 69 THR 69 A GLU 70 n 70 GLU 70 A PHE 71 n 71 PHE 71 A THR 72 n 72 THR 72 A LEU 73 n 73 LEU 73 A THR 74 n 74 THR 74 A ILE 75 n 75 ILE 75 A SER 76 n 76 SER 76 A THR 77 n 77 THR 77 A LEU 78 n 78 LEU 78 A ARG 79 n 79 ARG 79 A PRO 80 n 80 PRO 80 A GLU 81 n 81 GLU 81 A ASP 82 n 82 ASP 82 A PHE 83 n 83 PHE 83 A ALA 84 n 84 ALA 84 A THR 85 n 85 THR 85 A TYR 86 n 86 TYR 86 A TYR 87 n 87 TYR 87 A CYS 88 n 88 CYS 88 A GLN 89 n 89 GLN 89 A GLN 90 n 90 GLN 90 A LEU 91 n 91 LEU 91 A HIS 92 n 92 HIS 92 A PHE 93 n 93 PHE 93 A TYR 94 n 94 TYR 94 A PRO 95 n 95 PRO 95 A HIS 96 n 96 HIS 96 A THR 97 n 97 THR 97 A PHE 98 n 98 PHE 98 A GLY 99 n 99 GLY 99 A GLY 100 n 100 GLY 100 A GLY 101 n 101 GLY 101 A THR 102 n 102 THR 102 A ARG 103 n 103 ARG 103 A VAL 104 n 104 VAL 104 A ASP 105 n 105 ASP 105 A VAL 106 n 106 VAL 106 A ARG 107 n 107 ARG 107 A ARG 108 n 108 ARG 108 A THR 109 n 109 THR 109 A VAL 110 n 110 VAL 110 A ALA 111 n 111 ALA 111 A ALA 112 n 112 ALA 112 A PRO 113 n 113 PRO 113 A SER 114 n 114 SER 114 A VAL 115 n 115 VAL 115 A PHE 116 n 116 PHE 116 A ILE 117 n 117 ILE 117 A PHE 118 n 118 PHE 118 A PRO 119 n 119 PRO 119 A PRO 120 n 120 PRO 120 A SER 121 n 121 SER 121 A ASP 122 n 122 ASP 122 A GLU 123 n 123 GLU 123 A GLN 124 n 124 GLN 124 A LEU 125 n 125 LEU 125 A LYS 126 n 126 LYS 126 A SER 127 n 127 SER 127 A GLY 128 n 128 GLY 128 A THR 129 n 129 THR 129 A ALA 130 n 130 ALA 130 A SER 131 n 131 SER 131 A VAL 132 n 132 VAL 132 A VAL 133 n 133 VAL 133 A CYS 134 n 134 CYS 134 A LEU 135 n 135 LEU 135 A LEU 136 n 136 LEU 136 A ASN 137 n 137 ASN 137 A ASN 138 n 138 ASN 138 A PHE 139 n 139 PHE 139 A TYR 140 n 140 TYR 140 A PRO 141 n 141 PRO 141 A ARG 142 n 142 ARG 142 A GLU 143 n 143 GLU 143 A ALA 144 n 144 ALA 144 A LYS 145 n 145 LYS 145 A VAL 146 n 146 VAL 146 A GLN 147 n 147 GLN 147 A TRP 148 n 148 TRP 148 A LYS 149 n 149 LYS 149 A VAL 150 n 150 VAL 150 A ASP 151 n 151 ASP 151 A ASN 152 n 152 ASN 152 A ALA 153 n 153 ALA 153 A LEU 154 n 154 LEU 154 A GLN 155 n 155 GLN 155 A SER 156 n 156 SER 156 A GLY 157 n 157 GLY 157 A ASN 158 n 158 ASN 158 A SER 159 n 159 SER 159 A GLN 160 n 160 GLN 160 A GLU 161 n 161 GLU 161 A SER 162 n 162 SER 162 A VAL 163 n 163 VAL 163 A THR 164 n 164 THR 164 A GLU 165 n 165 GLU 165 A GLN 166 n 166 GLN 166 A ASP 167 n 167 ASP 167 A SER 168 n 168 SER 168 A LYS 169 n 169 LYS 169 A ASP 170 n 170 ASP 170 A SER 171 n 171 SER 171 A THR 172 n 172 THR 172 A TYR 173 n 173 TYR 173 A SER 174 n 174 SER 174 A LEU 175 n 175 LEU 175 A SER 176 n 176 SER 176 A SER 177 n 177 SER 177 A THR 178 n 178 THR 178 A LEU 179 n 179 LEU 179 A THR 180 n 180 THR 180 A LEU 181 n 181 LEU 181 A SER 182 n 182 SER 182 A LYS 183 n 183 LYS 183 A ALA 184 n 184 ALA 184 A ASP 185 n 185 ASP 185 A TYR 186 n 186 TYR 186 A GLU 187 n 187 GLU 187 A LYS 188 n 188 LYS 188 A HIS 189 n 189 HIS 189 A LYS 190 n 190 LYS 190 A VAL 191 n 191 VAL 191 A TYR 192 n 192 TYR 192 A GLU 193 n 193 GLU 193 A CYS 194 n 194 CYS 194 A GLU 195 n 195 GLU 195 A VAL 196 n 196 VAL 196 A THR 197 n 197 THR 197 A HIS 198 n 198 HIS 198 A GLN 199 n 199 GLN 199 A GLY 200 n 200 GLY 200 A LEU 201 n 201 LEU 201 A SER 202 n 202 SER 202 A SER 203 n 203 SER 203 A PRO 204 n 204 PRO 204 A VAL 205 n 205 VAL 205 A THR 206 n 206 THR 206 A LYS 207 n 207 LYS 207 A SER 208 n 208 SER 208 A PHE 209 n 209 PHE 209 A ASN 210 n 210 ASN 210 A ARG 211 n 211 ARG 211 A GLY 212 n 212 GLY 212 A GLU 213 n 213 GLU 213 A CYS 214 n 214 CYS 214 A ARG 1 n 1 ARG 1 B ILE 2 n 2 ILE 2 B THR 3 n 3 THR 3 B LEU 4 n 4 LEU 4 B LYS 5 n 5 LYS 5 B GLU 6 n 6 GLU 6 B SER 7 n 7 SER 7 B GLY 8 n 8 GLY 8 B PRO 9 n 9 PRO 9 B PRO 10 n 10 PRO 10 B LEU 11 n 11 LEU 11 B VAL 12 n 12 VAL 12 B LYS 13 n 13 LYS 13 B PRO 14 n 14 PRO 14 B THR 15 n 15 THR 15 B GLN 16 n 16 GLN 16 B THR 17 n 17 THR 17 B LEU 18 n 18 LEU 18 B THR 19 n 19 THR 19 B LEU 20 n 20 LEU 20 B THR 21 n 21 THR 21 B CYS 22 n 22 CYS 22 B SER 23 n 23 SER 23 B PHE 24 n 24 PHE 24 B SER 25 n 25 SER 25 B GLY 26 n 26 GLY 26 B PHE 27 n 27 PHE 27 B SER 28 n 28 SER 28 B LEU 29 n 29 LEU 29 B SER 30 n 30 SER 30 B ASP 31 n 31 ASP 31 B PHE 32 n 32 PHE 32 B GLY 33 n 33 GLY 33 B VAL 34 n 34 VAL 34 B GLY 35 n 35 GLY 35 B VAL 35 n 36 A VAL 35 B GLY 35 n 37 B GLY 35 B TRP 36 n 38 TRP 36 B ILE 37 n 39 ILE 37 B ARG 38 n 40 ARG 38 B GLN 39 n 41 GLN 39 B PRO 40 n 42 PRO 40 B PRO 41 n 43 PRO 41 B GLY 42 n 44 GLY 42 B LYS 43 n 45 LYS 43 B ALA 44 n 46 ALA 44 B LEU 45 n 47 LEU 45 B GLU 46 n 48 GLU 46 B TRP 47 n 49 TRP 47 B LEU 48 n 50 LEU 48 B ALA 49 n 51 ALA 49 B ILE 50 n 52 ILE 50 B ILE 51 n 53 ILE 51 B TYR 52 n 54 TYR 52 B SER 53 n 55 SER 53 B ASP 54 n 56 ASP 54 B ASP 55 n 57 ASP 55 B ASP 56 n 58 ASP 56 B LYS 57 n 59 LYS 57 B ARG 58 n 60 ARG 58 B TYR 59 n 61 TYR 59 B SER 60 n 62 SER 60 B PRO 61 n 63 PRO 61 B SER 62 n 64 SER 62 B LEU 63 n 65 LEU 63 B ASN 64 n 66 ASN 64 B THR 65 n 67 THR 65 B ARG 66 n 68 ARG 66 B LEU 67 n 69 LEU 67 B THR 68 n 70 THR 68 B ILE 69 n 71 ILE 69 B THR 70 n 72 THR 70 B LYS 71 n 73 LYS 71 B ASP 72 n 74 ASP 72 B THR 73 n 75 THR 73 B SER 74 n 76 SER 74 B LYS 75 n 77 LYS 75 B ASN 76 n 78 ASN 76 B GLN 77 n 79 GLN 77 B VAL 78 n 80 VAL 78 B VAL 79 n 81 VAL 79 B LEU 80 n 82 LEU 80 B VAL 81 n 83 VAL 81 B MET 82 n 84 MET 82 B THR 82 n 85 A THR 82 B ARG 82 n 86 B ARG 82 B VAL 82 n 87 C VAL 82 B SER 83 n 88 SER 83 B PRO 84 n 89 PRO 84 B VAL 85 n 90 VAL 85 B ASP 86 n 91 ASP 86 B THR 87 n 92 THR 87 B ALA 88 n 93 ALA 88 B THR 89 n 94 THR 89 B TYR 90 n 95 TYR 90 B PHE 91 n 96 PHE 91 B CYS 92 n 97 CYS 92 B ALA 93 n 98 ALA 93 B HIS 94 n 99 HIS 94 B ARG 95 n 100 ARG 95 B ARG 96 n 101 ARG 96 B GLY 97 n 102 GLY 97 B PRO 98 n 103 PRO 98 B THR 99 n 104 THR 99 B THR 100 n 105 THR 100 B LEU 100 n 106 A LEU 100 B PHE 100 n 107 B PHE 100 B GLY 100 n 108 C GLY 100 B VAL 100 n 109 D VAL 100 B PRO 100 n 110 E PRO 100 B ILE 100 n 111 F ILE 100 B ALA 100 n 112 G ALA 100 B ARG 100 n 113 H ARG 100 B GLY 100 n 114 I GLY 100 B PRO 100 n 115 J PRO 100 B VAL 100 n 116 K VAL 100 B ASN 100 n 117 L ASN 100 B ALA 100 n 118 M ALA 100 B MET 100 n 119 N MET 100 B ASP 101 n 120 ASP 101 B VAL 102 n 121 VAL 102 B TRP 103 n 122 TRP 103 B GLY 104 n 123 GLY 104 B GLN 105 n 124 GLN 105 B GLY 106 n 125 GLY 106 B ILE 107 n 126 ILE 107 B THR 108 n 127 THR 108 B VAL 109 n 128 VAL 109 B THR 110 n 129 THR 110 B ILE 111 n 130 ILE 111 B SER 112 n 131 SER 112 B SER 113 n 132 SER 113 B THR 114 n 133 THR 114 B SER 115 n 134 SER 115 B THR 116 n 135 THR 116 B LYS 117 n 136 LYS 117 B GLY 118 n 137 GLY 118 B PRO 119 n 138 PRO 119 B SER 120 n 139 SER 120 B VAL 121 n 140 VAL 121 B PHE 122 n 141 PHE 122 B PRO 123 n 142 PRO 123 B LEU 124 n 143 LEU 124 B ALA 125 n 144 ALA 125 B PRO 126 n 145 PRO 126 B n 146 127 B n 147 128 B n 148 129 B n 149 130 B n 150 131 B n 151 132 B GLY 133 n 152 GLY 133 B ALA 134 n 153 ALA 134 B ALA 135 n 154 ALA 135 B ALA 136 n 155 ALA 136 B ALA 137 n 156 ALA 137 B LEU 138 n 157 LEU 138 B GLY 139 n 158 GLY 139 B CYS 140 n 159 CYS 140 B LEU 141 n 160 LEU 141 B VAL 142 n 161 VAL 142 B LYS 143 n 162 LYS 143 B ASP 144 n 163 ASP 144 B TYR 145 n 164 TYR 145 B PHE 146 n 165 PHE 146 B PRO 147 n 166 PRO 147 B GLU 148 n 167 GLU 148 B PRO 149 n 168 PRO 149 B VAL 150 n 169 VAL 150 B THR 151 n 170 THR 151 B VAL 152 n 171 VAL 152 B SER 153 n 172 SER 153 B TRP 154 n 173 TRP 154 B ASN 155 n 174 ASN 155 B SER 156 n 175 SER 156 B GLY 157 n 176 GLY 157 B ALA 158 n 177 ALA 158 B LEU 159 n 178 LEU 159 B THR 160 n 179 THR 160 B SER 161 n 180 SER 161 B GLY 162 n 181 GLY 162 B VAL 163 n 182 VAL 163 B HIS 164 n 183 HIS 164 B THR 165 n 184 THR 165 B PHE 166 n 185 PHE 166 B PRO 167 n 186 PRO 167 B ALA 168 n 187 ALA 168 B VAL 169 n 188 VAL 169 B LEU 170 n 189 LEU 170 B GLN 171 n 190 GLN 171 B SER 172 n 191 SER 172 B SER 173 n 192 SER 173 B GLY 174 n 193 GLY 174 B LEU 175 n 194 LEU 175 B TYR 176 n 195 TYR 176 B SER 177 n 196 SER 177 B LEU 178 n 197 LEU 178 B SER 179 n 198 SER 179 B SER 180 n 199 SER 180 B VAL 181 n 200 VAL 181 B VAL 182 n 201 VAL 182 B THR 183 n 202 THR 183 B VAL 184 n 203 VAL 184 B PRO 185 n 204 PRO 185 B SER 186 n 205 SER 186 B SER 187 n 206 SER 187 B SER 188 n 207 SER 188 B LEU 189 n 208 LEU 189 B n 209 190 B n 210 191 B GLN 192 n 211 GLN 192 B THR 193 n 212 THR 193 B TYR 194 n 213 TYR 194 B THR 195 n 214 THR 195 B CYS 196 n 215 CYS 196 B ASN 197 n 216 ASN 197 B VAL 198 n 217 VAL 198 B ASN 199 n 218 ASN 199 B HIS 200 n 219 HIS 200 B LYS 201 n 220 LYS 201 B PRO 202 n 221 PRO 202 B SER 203 n 222 SER 203 B ASN 204 n 223 ASN 204 B THR 205 n 224 THR 205 B LYS 206 n 225 LYS 206 B VAL 207 n 226 VAL 207 B ASP 208 n 227 ASP 208 B LYS 209 n 228 LYS 209 B ARG 210 n 229 ARG 210 B VAL 211 n 230 VAL 211 B GLU 212 n 231 GLU 212 B PRO 213 n 232 PRO 213 B LYS 214 n 233 LYS 214 B SER 215 n 234 SER 215 B CYS 216 n 235 CYS 216 B GLU 1 n 1 GLU 1 C LEU 2 n 2 LEU 2 C ASP 3 n 3 ASP 3 C LYS 4 n 4 LYS 4 C TYR 5 n 5 TYR 5 C ALA 6 n 6 ALA 6 C SER 7 n 7 SER 7 C author_and_software_defined_assembly PISA 3 trimeric 4490 -23 20050 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N SER 7 A N SER 7 A O THR 22 A O THR 22 A N CYS 23 A N CYS 23 A O PHE 71 A O PHE 71 A O THR 74 A O THR 74 A N SER 63 A N SER 63 A N LEU 11 A N LEU 11 A O ARG 103 A O ARG 103 A O VAL 104 A O VAL 104 A N ALA 84 A N ALA 84 A O THR 85 A O THR 85 A N GLN 38 A N GLN 38 A N TRP 35 A N TRP 35 A O LEU 47 A O LEU 47 A N TYR 49 A N TYR 49 A O SER 53 A O SER 53 A N PHE 118 A N PHE 118 A O VAL 133 A O VAL 133 A N VAL 132 A N VAL 132 A O LEU 179 A O LEU 179 A O THR 178 A O THR 178 A N GLN 160 A N GLN 160 A O ALA 153 A O ALA 153 A N VAL 150 A N VAL 150 A N LYS 149 A N LYS 149 A O GLU 193 A O GLU 193 A N VAL 196 A N VAL 196 A O VAL 205 A O VAL 205 B N SER 7 B N SER 7 B O THR 21 B O THR 21 B N LEU 18 B N LEU 18 B O MET 82 B O MET 84 B O GLN 77 B O GLN 79 B N ASP 72 B N ASP 74 B N VAL 12 B N VAL 12 B O THR 110 B O THR 129 B O ILE 107 B O ILE 126 B N TYR 90 B N TYR 95 B O PHE 91 B O PHE 96 B N ILE 37 B N ILE 39 B N ARG 38 B N ARG 40 B O GLU 46 B O GLU 48 B N ILE 50 B N ILE 52 B O ARG 58 B O ARG 60 B N VAL 12 B N VAL 12 B O THR 110 B O THR 129 B O ILE 107 B O ILE 126 B N TYR 90 B N TYR 95 B N HIS 94 B N HIS 99 B O VAL 102 B O VAL 121 B N THR 99 B N THR 104 F B O ILE 100 B O ILE 111 B N LEU 124 B N LEU 143 B O GLY 139 B O GLY 158 B N VAL 142 B N VAL 161 B O LEU 178 B O LEU 197 B O VAL 181 B O VAL 200 B N HIS 164 B N HIS 183 B N LEU 124 B N LEU 143 B O GLY 139 B O GLY 158 B N VAL 142 B N VAL 161 B O LEU 178 B O LEU 197 B O SER 177 B O SER 196 B N VAL 169 B N VAL 188 B N SER 153 B N SER 172 B O ASN 197 B O ASN 216 B N TYR 194 B N TYR 213 B O VAL 211 B O VAL 230 1 B SER 127 B SER 146 1 Y 1 B SER 128 B SER 147 1 Y 1 B LYS 129 B LYS 148 1 Y 1 B SER 130 B SER 149 1 Y 1 B THR 131 B THR 150 1 Y 1 B ALA 132 B ALA 151 1 Y 1 B GLY 190 B GLY 209 1 Y 1 B THR 191 B THR 210 1 Y 1 A TYR 86 0.065 SIDE CHAIN 1 7.79 1.10 114.20 121.99 A A A CA CB SG CYS CYS CYS 23 23 23 N 1 6.40 0.50 120.30 126.70 B B B NE CZ NH1 ARG ARG ARG 38 38 38 N 1 -6.45 0.50 120.30 113.85 B B B NE CZ NH2 ARG ARG ARG 38 38 38 N 1 4.37 0.50 120.30 124.67 B B B NE CZ NH1 ARG ARG ARG 66 66 66 N 1 -3.14 0.50 120.30 117.16 B B B NE CZ NH2 ARG ARG ARG 66 66 66 N 1 10.59 1.10 114.20 124.79 B B B CA CB SG CYS CYS CYS 216 216 216 N 1 A A CG CD GLU GLU 193 193 0.128 0.015 1.515 1.643 N 1 B B C N SER THR 113 114 0.155 0.023 1.336 1.491 Y 1 B B CB SG CYS CYS 216 216 0.169 0.017 1.818 1.987 N 1 A THR 30 51.79 -132.17 1 A ALA 51 62.34 -36.85 1 A SER 52 -140.87 -3.09 1 A ALA 84 -176.18 -171.13 1 B THR 15 72.83 -15.15 M 1 B ALA 100 170.95 161.91 1 B SER 156 49.99 24.55 1 B THR 160 -131.25 -36.96 1 B SER 186 -51.15 2.34 1 B PRO 213 -67.44 65.59 1 B LYS 214 11.70 -138.90 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM 35.4 -1.52 .00 .00 .26 .00 1.26 0.225 .005 0.218 0.218 2.40 50.0 2021 26939 25808 7.8 95.8 RANDOM 332314.90 .000000 1 OVERALL THROUGHOUT .0 MOLECULAR REPLACEMENT Engh & Huber FLAT MODEL 29.4905 .368495 .31 .30 5.00 .29 .26 2.40 50.0 182 3589 0 0 3407 .020 2.1 28.0 1.41 0.328 .019 0.287 2.55 302 3611 6 7.7 89.1 37.2 2.4 50.0 1U8M 26939 25808 0 0 0.054 1 95.8 2.40 2.55 89.1 refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK phasing CNS ANTIBODY 2F5 (LIGHT CHAIN), ANTIBODY 2F5 (HEAVY CHAIN), GP41 PEPTIDE Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide ELDKYAS 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N A ARG 79 A ARG 79 HELX_P A PHE 83 A PHE 83 5 1 5 A SER 121 A SER 121 HELX_P A LYS 126 A LYS 126 1 2 6 A LYS 183 A LYS 183 HELX_P A LYS 188 A LYS 188 1 3 6 B LEU 63 B LEU 65 HELX_P B THR 65 B THR 67 5 4 3 B THR 73 B THR 75 HELX_P B LYS 75 B LYS 77 5 5 3 B SER 83 B SER 88 HELX_P B THR 87 B THR 92 5 6 5 B ARG 100 B ARG 113 HELX_P B ASN 100 B ASN 117 5 7 5 H L B SER 156 B SER 175 HELX_P B ALA 158 B ALA 177 5 8 3 B LYS 201 B LYS 220 HELX_P B ASN 204 B ASN 223 5 9 4 disulf 2.063 A CYS 23 A SG CYS 23 1_555 A CYS 88 A SG CYS 88 1_555 disulf 2.036 A CYS 134 A SG CYS 134 1_555 A CYS 194 A SG CYS 194 1_555 disulf 2.131 B CYS 22 B SG CYS 22 1_555 B CYS 92 B SG CYS 97 1_555 disulf 2.011 B CYS 140 B SG CYS 159 1_555 B CYS 196 B SG CYS 215 1_555 IMMUNE SYSTEM Fab complex, HIV-1 Neutralization, gp41 Peptide, IMMUNE SYSTEM A SER 7 A SER 7 1 A PRO 8 A PRO 8 -1.35 A TYR 94 A TYR 94 1 A PRO 95 A PRO 95 -0.66 A TYR 140 A TYR 140 1 A PRO 141 A PRO 141 -0.22 B PHE 146 B PHE 165 1 B PRO 147 B PRO 166 -1.03 B GLU 148 B GLU 167 1 B PRO 149 B PRO 168 0.17 1U8M PDB 1 1U8M 1U8M PDB 2 1U8M 1U8M PDB 3 1U8M 1 214 1U8M 1 214 1U8M A 1 1 214 1 216 1U8M 1 216 1U8M B 2 1 235 1 7 1U8M 1 7 1U8M C 3 1 7 4 6 4 4 4 6 4 2 4 4 3 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 4 A LEU 4 A SER 7 A SER 7 A ILE 19 A ILE 19 A ALA 25 A ALA 25 A GLU 70 A GLU 70 A ILE 75 A ILE 75 A PHE 62 A PHE 62 A SER 67 A SER 67 A SER 10 A SER 10 A ALA 13 A ALA 13 A THR 102 A THR 102 A VAL 106 A VAL 106 A ALA 84 A ALA 84 A GLN 90 A GLN 90 A LEU 33 A LEU 33 A GLN 38 A GLN 38 A GLN 45 A GLN 45 A TYR 49 A TYR 49 A SER 53 A SER 53 A LEU 54 A LEU 54 A SER 114 A SER 114 A PHE 118 A PHE 118 A THR 129 A THR 129 A PHE 139 A PHE 139 A TYR 173 A TYR 173 A SER 182 A SER 182 A SER 159 A SER 159 A VAL 163 A VAL 163 A ALA 153 A ALA 153 A LEU 154 A LEU 154 A LYS 145 A LYS 145 A VAL 150 A VAL 150 A VAL 191 A VAL 191 A THR 197 A THR 197 A VAL 205 A VAL 205 A ASN 210 A ASN 210 B THR 3 B THR 3 B SER 7 B SER 7 B LEU 18 B LEU 18 B SER 25 B SER 25 B GLN 77 B GLN 79 B MET 82 B MET 84 B LEU 67 B LEU 69 B ASP 72 B ASP 74 B LEU 11 B LEU 11 B VAL 12 B VAL 12 B ILE 107 B ILE 126 B ILE 111 B ILE 130 B ALA 88 B ALA 93 B ARG 95 B ARG 100 B GLY 35 B GLY 35 B GLN 39 B GLN 41 B GLU 46 B GLU 48 B TYR 52 B TYR 54 B LYS 57 B LYS 59 B TYR 59 B TYR 61 B LEU 11 B LEU 11 B VAL 12 B VAL 12 B ILE 107 B ILE 126 B ILE 111 B ILE 130 B ALA 88 B ALA 93 B ARG 95 B ARG 100 B VAL 102 B VAL 121 B TRP 103 B TRP 122 B THR 99 B THR 104 B THR 100 B THR 105 B PRO 100 B PRO 110 B ALA 100 B ALA 112 E G B SER 120 B SER 139 B LEU 124 B LEU 143 B ALA 135 B ALA 154 B TYR 145 B TYR 164 B TYR 176 B TYR 195 B PRO 185 B PRO 204 B VAL 163 B VAL 182 B THR 165 B THR 184 B SER 120 B SER 139 B LEU 124 B LEU 143 B ALA 135 B ALA 154 B TYR 145 B TYR 164 B TYR 176 B TYR 195 B PRO 185 B PRO 204 B VAL 169 B VAL 188 B LEU 170 B LEU 189 B THR 151 B THR 170 B TRP 154 B TRP 173 B TYR 194 B TYR 213 B HIS 200 B HIS 219 B THR 205 B THR 224 B VAL 211 B VAL 230 19 P 21 21 21