0.010674
0.006162
0.000000
0.000000
0.012325
0.000000
0.000000
0.000000
0.005629
0.00000
0.00000
0.00000
Ahn, H.J.
Kim, H.-W.
Yoon, H.-J.
Lee, B.I.
Suh, S.W.
Yang, J.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
93.688
93.688
177.667
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C14 H20 N6 O5 S
384.411
n
S-ADENOSYL-L-HOMOCYSTEINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
C
N
294
N
S
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
C
N
299
S
C
N
300
N
O
N
301
S
C
N
302
N
O
N
303
R
C
N
304
N
O
N
305
R
C
Y
306
N
N
Y
307
N
C
Y
308
N
N
Y
309
N
C
Y
310
N
C
N
311
N
N
Y
312
N
N
Y
313
N
C
Y
314
N
N
Y
315
N
C
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
R
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
N
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
Y
310
N
sing
Y
311
N
sing
Y
312
N
doub
N
313
N
sing
Y
314
N
sing
Y
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
doub
N
319
N
sing
N
320
N
sing
Y
321
N
sing
Y
322
N
doub
N
323
N
sing
Y
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
22
2593
2603
10.1093/emboj/cdg269
12773376
Crystal structure of tRNA(m(1)G37)methyltransferase: insights into tRNA recognition
2003
10.2210/pdb1ual/pdb
pdb_00001ual
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-05-15
ADSC QUANTUM 4
Si(111) + Ge(220)
SINGLE WAVELENGTH
M
x-ray
1
0.9500
1.0
BL-18B
Photon Factory
0.9500
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-18B
30821.154
tRNA (Guanine-N(1)-)-methyltransferase
2.1.1.31
1
man
polymer
384.411
S-ADENOSYL-L-HOMOCYSTEINE
1
syn
non-polymer
18.015
water
278
nat
water
tRNA(m1G37)methyltransferase
no
no
MGSSHHHHHHSSGLVPRGSHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGM
LMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTG
GELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRR
PELLEGLALTDEQRKLLKEAQAEHNSLEHHHHHH
MGSSHHHHHHSSGLVPRGSHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGM
LMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTG
GELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRR
PELLEGLALTDEQRKLLKEAQAEHNSLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Haemophilus
Escherichia
sample
727
Haemophilus influenzae
562
Escherichia coli
plasmid
pET28b
1
2.40
48.44
VAPOR DIFFUSION, HANGING DROP
6.5
sodium acetate, sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-06-17
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
tRNA(m1G37)methyltransferase
tRNA(m1G37)methyltransferase with S-ADENOSYLMETHIONINE
tRNA(m1G37)methyltransferase with S-ADENOSYL-L-HOMOCYSTEINE and PHOSPHATE ION
PDBJ
Y
PDBJ
2003-03-11
REL
REL
SAH
S-ADENOSYL-L-HOMOCYSTEINE
HOH
water
SAH
301
2
SAH
SAH
301
A
WAT
1001
3
HOH
HOH
1001
A
WAT
1002
3
HOH
HOH
1002
A
WAT
1003
3
HOH
HOH
1003
A
WAT
1004
3
HOH
HOH
1004
A
WAT
1005
3
HOH
HOH
1005
A
WAT
1006
3
HOH
HOH
1006
A
WAT
1007
3
HOH
HOH
1007
A
WAT
1008
3
HOH
HOH
1008
A
WAT
1009
3
HOH
HOH
1009
A
WAT
1010
3
HOH
HOH
1010
A
WAT
1011
3
HOH
HOH
1011
A
WAT
1012
3
HOH
HOH
1012
A
WAT
1013
3
HOH
HOH
1013
A
WAT
1014
3
HOH
HOH
1014
A
WAT
1015
3
HOH
HOH
1015
A
WAT
1016
3
HOH
HOH
1016
A
WAT
1017
3
HOH
HOH
1017
A
WAT
1018
3
HOH
HOH
1018
A
WAT
1019
3
HOH
HOH
1019
A
WAT
1020
3
HOH
HOH
1020
A
WAT
1021
3
HOH
HOH
1021
A
WAT
1022
3
HOH
HOH
1022
A
WAT
1023
3
HOH
HOH
1023
A
WAT
1024
3
HOH
HOH
1024
A
WAT
1025
3
HOH
HOH
1025
A
WAT
1026
3
HOH
HOH
1026
A
WAT
1027
3
HOH
HOH
1027
A
WAT
1028
3
HOH
HOH
1028
A
WAT
1029
3
HOH
HOH
1029
A
WAT
1030
3
HOH
HOH
1030
A
WAT
1031
3
HOH
HOH
1031
A
WAT
1032
3
HOH
HOH
1032
A
WAT
1033
3
HOH
HOH
1033
A
WAT
1034
3
HOH
HOH
1034
A
WAT
1035
3
HOH
HOH
1035
A
WAT
1036
3
HOH
HOH
1036
A
WAT
1037
3
HOH
HOH
1037
A
WAT
1038
3
HOH
HOH
1038
A
WAT
1039
3
HOH
HOH
1039
A
WAT
1040
3
HOH
HOH
1040
A
WAT
1041
3
HOH
HOH
1041
A
WAT
1042
3
HOH
HOH
1042
A
WAT
1043
3
HOH
HOH
1043
A
WAT
1044
3
HOH
HOH
1044
A
WAT
1045
3
HOH
HOH
1045
A
WAT
1046
3
HOH
HOH
1046
A
WAT
1047
3
HOH
HOH
1047
A
WAT
1048
3
HOH
HOH
1048
A
WAT
1049
3
HOH
HOH
1049
A
WAT
1050
3
HOH
HOH
1050
A
WAT
1051
3
HOH
HOH
1051
A
WAT
1052
3
HOH
HOH
1052
A
WAT
1053
3
HOH
HOH
1053
A
WAT
1054
3
HOH
HOH
1054
A
WAT
1055
3
HOH
HOH
1055
A
WAT
1056
3
HOH
HOH
1056
A
WAT
1057
3
HOH
HOH
1057
A
WAT
1058
3
HOH
HOH
1058
A
WAT
1059
3
HOH
HOH
1059
A
WAT
1060
3
HOH
HOH
1060
A
WAT
1061
3
HOH
HOH
1061
A
WAT
1062
3
HOH
HOH
1062
A
WAT
1063
3
HOH
HOH
1063
A
WAT
1064
3
HOH
HOH
1064
A
WAT
1065
3
HOH
HOH
1065
A
WAT
1066
3
HOH
HOH
1066
A
WAT
1067
3
HOH
HOH
1067
A
WAT
1068
3
HOH
HOH
1068
A
WAT
1069
3
HOH
HOH
1069
A
WAT
1070
3
HOH
HOH
1070
A
WAT
1071
3
HOH
HOH
1071
A
WAT
1072
3
HOH
HOH
1072
A
WAT
1073
3
HOH
HOH
1073
A
WAT
1074
3
HOH
HOH
1074
A
WAT
1075
3
HOH
HOH
1075
A
WAT
1076
3
HOH
HOH
1076
A
WAT
1077
3
HOH
HOH
1077
A
WAT
1078
3
HOH
HOH
1078
A
WAT
1079
3
HOH
HOH
1079
A
WAT
1080
3
HOH
HOH
1080
A
WAT
1081
3
HOH
HOH
1081
A
WAT
1082
3
HOH
HOH
1082
A
WAT
1083
3
HOH
HOH
1083
A
WAT
1084
3
HOH
HOH
1084
A
WAT
1085
3
HOH
HOH
1085
A
WAT
1086
3
HOH
HOH
1086
A
WAT
1087
3
HOH
HOH
1087
A
WAT
1088
3
HOH
HOH
1088
A
WAT
1089
3
HOH
HOH
1089
A
WAT
1090
3
HOH
HOH
1090
A
WAT
1091
3
HOH
HOH
1091
A
WAT
1092
3
HOH
HOH
1092
A
WAT
1093
3
HOH
HOH
1093
A
WAT
1094
3
HOH
HOH
1094
A
WAT
1095
3
HOH
HOH
1095
A
WAT
1096
3
HOH
HOH
1096
A
WAT
1097
3
HOH
HOH
1097
A
WAT
1098
3
HOH
HOH
1098
A
WAT
1099
3
HOH
HOH
1099
A
WAT
1100
3
HOH
HOH
1100
A
WAT
1101
3
HOH
HOH
1101
A
WAT
1102
3
HOH
HOH
1102
A
WAT
1103
3
HOH
HOH
1103
A
WAT
1104
3
HOH
HOH
1104
A
WAT
1105
3
HOH
HOH
1105
A
WAT
1106
3
HOH
HOH
1106
A
WAT
1107
3
HOH
HOH
1107
A
WAT
1108
3
HOH
HOH
1108
A
WAT
1109
3
HOH
HOH
1109
A
WAT
1110
3
HOH
HOH
1110
A
WAT
1111
3
HOH
HOH
1111
A
WAT
1112
3
HOH
HOH
1112
A
WAT
1113
3
HOH
HOH
1113
A
WAT
1114
3
HOH
HOH
1114
A
WAT
1115
3
HOH
HOH
1115
A
WAT
1116
3
HOH
HOH
1116
A
WAT
1117
3
HOH
HOH
1117
A
WAT
1118
3
HOH
HOH
1118
A
WAT
1119
3
HOH
HOH
1119
A
WAT
1120
3
HOH
HOH
1120
A
WAT
1121
3
HOH
HOH
1121
A
WAT
1122
3
HOH
HOH
1122
A
WAT
1123
3
HOH
HOH
1123
A
WAT
1124
3
HOH
HOH
1124
A
WAT
1125
3
HOH
HOH
1125
A
WAT
1126
3
HOH
HOH
1126
A
WAT
1127
3
HOH
HOH
1127
A
WAT
1128
3
HOH
HOH
1128
A
WAT
1129
3
HOH
HOH
1129
A
WAT
1130
3
HOH
HOH
1130
A
WAT
1131
3
HOH
HOH
1131
A
WAT
1132
3
HOH
HOH
1132
A
WAT
1133
3
HOH
HOH
1133
A
WAT
1134
3
HOH
HOH
1134
A
WAT
1135
3
HOH
HOH
1135
A
WAT
1136
3
HOH
HOH
1136
A
WAT
1137
3
HOH
HOH
1137
A
WAT
1138
3
HOH
HOH
1138
A
WAT
1139
3
HOH
HOH
1139
A
WAT
1140
3
HOH
HOH
1140
A
WAT
1141
3
HOH
HOH
1141
A
WAT
1142
3
HOH
HOH
1142
A
WAT
1143
3
HOH
HOH
1143
A
WAT
1144
3
HOH
HOH
1144
A
WAT
1145
3
HOH
HOH
1145
A
WAT
1146
3
HOH
HOH
1146
A
WAT
1147
3
HOH
HOH
1147
A
WAT
1148
3
HOH
HOH
1148
A
WAT
1149
3
HOH
HOH
1149
A
WAT
1150
3
HOH
HOH
1150
A
WAT
1151
3
HOH
HOH
1151
A
WAT
1152
3
HOH
HOH
1152
A
WAT
1153
3
HOH
HOH
1153
A
WAT
1154
3
HOH
HOH
1154
A
WAT
1155
3
HOH
HOH
1155
A
WAT
1156
3
HOH
HOH
1156
A
WAT
1157
3
HOH
HOH
1157
A
WAT
1158
3
HOH
HOH
1158
A
WAT
1159
3
HOH
HOH
1159
A
WAT
1160
3
HOH
HOH
1160
A
WAT
1161
3
HOH
HOH
1161
A
WAT
1162
3
HOH
HOH
1162
A
WAT
1163
3
HOH
HOH
1163
A
WAT
1164
3
HOH
HOH
1164
A
WAT
1165
3
HOH
HOH
1165
A
WAT
1166
3
HOH
HOH
1166
A
WAT
1167
3
HOH
HOH
1167
A
WAT
1168
3
HOH
HOH
1168
A
WAT
1169
3
HOH
HOH
1169
A
WAT
1170
3
HOH
HOH
1170
A
WAT
1171
3
HOH
HOH
1171
A
WAT
1172
3
HOH
HOH
1172
A
WAT
1173
3
HOH
HOH
1173
A
WAT
1174
3
HOH
HOH
1174
A
WAT
1175
3
HOH
HOH
1175
A
WAT
1176
3
HOH
HOH
1176
A
WAT
1177
3
HOH
HOH
1177
A
WAT
1178
3
HOH
HOH
1178
A
WAT
1179
3
HOH
HOH
1179
A
WAT
1180
3
HOH
HOH
1180
A
WAT
1181
3
HOH
HOH
1181
A
WAT
1182
3
HOH
HOH
1182
A
WAT
1183
3
HOH
HOH
1183
A
WAT
1184
3
HOH
HOH
1184
A
WAT
1185
3
HOH
HOH
1185
A
WAT
1186
3
HOH
HOH
1186
A
WAT
1187
3
HOH
HOH
1187
A
WAT
1188
3
HOH
HOH
1188
A
WAT
1189
3
HOH
HOH
1189
A
WAT
1190
3
HOH
HOH
1190
A
WAT
1191
3
HOH
HOH
1191
A
WAT
1192
3
HOH
HOH
1192
A
WAT
1193
3
HOH
HOH
1193
A
WAT
1194
3
HOH
HOH
1194
A
WAT
1195
3
HOH
HOH
1195
A
WAT
1196
3
HOH
HOH
1196
A
WAT
1197
3
HOH
HOH
1197
A
WAT
1198
3
HOH
HOH
1198
A
WAT
1199
3
HOH
HOH
1199
A
WAT
1200
3
HOH
HOH
1200
A
WAT
1201
3
HOH
HOH
1201
A
WAT
1202
3
HOH
HOH
1202
A
WAT
1203
3
HOH
HOH
1203
A
WAT
1204
3
HOH
HOH
1204
A
WAT
1205
3
HOH
HOH
1205
A
WAT
1206
3
HOH
HOH
1206
A
WAT
1207
3
HOH
HOH
1207
A
WAT
1208
3
HOH
HOH
1208
A
WAT
1209
3
HOH
HOH
1209
A
WAT
1210
3
HOH
HOH
1210
A
WAT
1211
3
HOH
HOH
1211
A
WAT
1212
3
HOH
HOH
1212
A
WAT
1213
3
HOH
HOH
1213
A
WAT
1214
3
HOH
HOH
1214
A
WAT
1215
3
HOH
HOH
1215
A
WAT
1216
3
HOH
HOH
1216
A
WAT
1217
3
HOH
HOH
1217
A
WAT
1218
3
HOH
HOH
1218
A
WAT
1219
3
HOH
HOH
1219
A
WAT
1220
3
HOH
HOH
1220
A
WAT
1221
3
HOH
HOH
1221
A
WAT
1222
3
HOH
HOH
1222
A
WAT
1223
3
HOH
HOH
1223
A
WAT
1224
3
HOH
HOH
1224
A
WAT
1225
3
HOH
HOH
1225
A
WAT
1226
3
HOH
HOH
1226
A
WAT
1227
3
HOH
HOH
1227
A
WAT
1228
3
HOH
HOH
1228
A
WAT
1229
3
HOH
HOH
1229
A
WAT
1230
3
HOH
HOH
1230
A
WAT
1231
3
HOH
HOH
1231
A
WAT
1232
3
HOH
HOH
1232
A
WAT
1233
3
HOH
HOH
1233
A
WAT
1234
3
HOH
HOH
1234
A
WAT
1235
3
HOH
HOH
1235
A
WAT
1236
3
HOH
HOH
1236
A
WAT
1237
3
HOH
HOH
1237
A
WAT
1238
3
HOH
HOH
1238
A
WAT
1239
3
HOH
HOH
1239
A
WAT
1240
3
HOH
HOH
1240
A
WAT
1241
3
HOH
HOH
1241
A
WAT
1242
3
HOH
HOH
1242
A
WAT
1243
3
HOH
HOH
1243
A
WAT
1244
3
HOH
HOH
1244
A
WAT
1245
3
HOH
HOH
1245
A
WAT
1246
3
HOH
HOH
1246
A
WAT
1247
3
HOH
HOH
1247
A
WAT
1248
3
HOH
HOH
1248
A
WAT
1249
3
HOH
HOH
1249
A
WAT
1250
3
HOH
HOH
1250
A
WAT
1251
3
HOH
HOH
1251
A
WAT
1252
3
HOH
HOH
1252
A
WAT
1253
3
HOH
HOH
1253
A
WAT
1254
3
HOH
HOH
1254
A
WAT
1255
3
HOH
HOH
1255
A
WAT
1256
3
HOH
HOH
1256
A
WAT
1257
3
HOH
HOH
1257
A
WAT
1258
3
HOH
HOH
1258
A
WAT
1259
3
HOH
HOH
1259
A
WAT
1260
3
HOH
HOH
1260
A
WAT
1261
3
HOH
HOH
1261
A
WAT
1262
3
HOH
HOH
1262
A
WAT
1263
3
HOH
HOH
1263
A
WAT
1264
3
HOH
HOH
1264
A
WAT
1265
3
HOH
HOH
1265
A
WAT
1266
3
HOH
HOH
1266
A
WAT
1267
3
HOH
HOH
1267
A
WAT
1268
3
HOH
HOH
1268
A
WAT
1269
3
HOH
HOH
1269
A
WAT
1270
3
HOH
HOH
1270
A
WAT
1271
3
HOH
HOH
1271
A
WAT
1272
3
HOH
HOH
1272
A
WAT
1273
3
HOH
HOH
1273
A
WAT
1274
3
HOH
HOH
1274
A
WAT
1275
3
HOH
HOH
1275
A
WAT
1276
3
HOH
HOH
1276
A
WAT
1277
3
HOH
HOH
1277
A
WAT
1278
3
HOH
HOH
1278
A
n
1
-19
A
n
2
-18
A
n
3
-17
A
n
4
-16
A
n
5
-15
A
n
6
-14
A
n
7
-13
A
n
8
-12
A
n
9
-11
A
n
10
-10
A
n
11
-9
A
n
12
-8
A
n
13
-7
A
n
14
-6
A
n
15
-5
A
n
16
-4
A
n
17
-3
A
n
18
-2
A
SER
-1
n
19
SER
-1
A
HIS
0
n
20
HIS
0
A
MET
1
n
21
MET
1
A
TRP
2
n
22
TRP
2
A
ILE
3
n
23
ILE
3
A
GLY
4
n
24
GLY
4
A
VAL
5
n
25
VAL
5
A
ILE
6
n
26
ILE
6
A
SER
7
n
27
SER
7
A
LEU
8
n
28
LEU
8
A
PHE
9
n
29
PHE
9
A
PRO
10
n
30
PRO
10
A
GLU
11
n
31
GLU
11
A
MET
12
n
32
MET
12
A
PHE
13
n
33
PHE
13
A
LYS
14
n
34
LYS
14
A
ALA
15
n
35
ALA
15
A
ILE
16
n
36
ILE
16
A
THR
17
n
37
THR
17
A
GLU
18
n
38
GLU
18
A
PHE
19
n
39
PHE
19
A
GLY
20
n
40
GLY
20
A
VAL
21
n
41
VAL
21
A
THR
22
n
42
THR
22
A
GLY
23
n
43
GLY
23
A
ARG
24
n
44
ARG
24
A
ALA
25
n
45
ALA
25
A
VAL
26
n
46
VAL
26
A
LYS
27
n
47
LYS
27
A
HIS
28
n
48
HIS
28
A
ASN
29
n
49
ASN
29
A
LEU
30
n
50
LEU
30
A
LEU
31
n
51
LEU
31
A
LYS
32
n
52
LYS
32
A
VAL
33
n
53
VAL
33
A
GLU
34
n
54
GLU
34
A
CYS
35
n
55
CYS
35
A
TRP
36
n
56
TRP
36
A
ASN
37
n
57
ASN
37
A
PRO
38
n
58
PRO
38
A
ARG
39
n
59
ARG
39
A
ASP
40
n
60
ASP
40
A
PHE
41
n
61
PHE
41
A
THR
42
n
62
THR
42
A
PHE
43
n
63
PHE
43
A
ASP
44
n
64
ASP
44
A
LYS
45
n
65
LYS
45
A
HIS
46
n
66
HIS
46
A
LYS
47
n
67
LYS
47
A
THR
48
n
68
THR
48
A
VAL
49
n
69
VAL
49
A
ASP
50
n
70
ASP
50
A
ASP
51
n
71
ASP
51
A
ARG
52
n
72
ARG
52
A
PRO
53
n
73
PRO
53
A
TYR
54
n
74
TYR
54
A
GLY
55
n
75
GLY
55
A
GLY
56
n
76
GLY
56
A
GLY
57
n
77
GLY
57
A
PRO
58
n
78
PRO
58
A
GLY
59
n
79
GLY
59
A
MET
60
n
80
MET
60
A
LEU
61
n
81
LEU
61
A
MET
62
n
82
MET
62
A
MET
63
n
83
MET
63
A
VAL
64
n
84
VAL
64
A
GLN
65
n
85
GLN
65
A
PRO
66
n
86
PRO
66
A
LEU
67
n
87
LEU
67
A
ARG
68
n
88
ARG
68
A
ASP
69
n
89
ASP
69
A
ALA
70
n
90
ALA
70
A
ILE
71
n
91
ILE
71
A
HIS
72
n
92
HIS
72
A
THR
73
n
93
THR
73
A
ALA
74
n
94
ALA
74
A
LYS
75
n
95
LYS
75
A
ALA
76
n
96
ALA
76
A
ALA
77
n
97
ALA
77
A
ALA
78
n
98
ALA
78
A
GLY
79
n
99
GLY
79
A
GLU
80
n
100
GLU
80
A
GLY
81
n
101
GLY
81
A
ALA
82
n
102
ALA
82
A
LYS
83
n
103
LYS
83
A
VAL
84
n
104
VAL
84
A
ILE
85
n
105
ILE
85
A
TYR
86
n
106
TYR
86
A
LEU
87
n
107
LEU
87
A
SER
88
n
108
SER
88
A
PRO
89
n
109
PRO
89
A
GLN
90
n
110
GLN
90
A
GLY
91
n
111
GLY
91
A
ARG
92
n
112
ARG
92
A
LYS
93
n
113
LYS
93
A
LEU
94
n
114
LEU
94
A
ASP
95
n
115
ASP
95
A
GLN
96
n
116
GLN
96
A
GLY
97
n
117
GLY
97
A
GLY
98
n
118
GLY
98
A
VAL
99
n
119
VAL
99
A
THR
100
n
120
THR
100
A
GLU
101
n
121
GLU
101
A
LEU
102
n
122
LEU
102
A
ALA
103
n
123
ALA
103
A
GLN
104
n
124
GLN
104
A
ASN
105
n
125
ASN
105
A
GLN
106
n
126
GLN
106
A
LYS
107
n
127
LYS
107
A
LEU
108
n
128
LEU
108
A
ILE
109
n
129
ILE
109
A
LEU
110
n
130
LEU
110
A
VAL
111
n
131
VAL
111
A
CYS
112
n
132
CYS
112
A
GLY
113
n
133
GLY
113
A
ARG
114
n
134
ARG
114
A
TYR
115
n
135
TYR
115
A
GLU
116
n
136
GLU
116
A
GLY
117
n
137
GLY
117
A
ILE
118
n
138
ILE
118
A
ASP
119
n
139
ASP
119
A
GLU
120
n
140
GLU
120
A
ARG
121
n
141
ARG
121
A
LEU
122
n
142
LEU
122
A
ILE
123
n
143
ILE
123
A
GLN
124
n
144
GLN
124
A
THR
125
n
145
THR
125
A
GLU
126
n
146
GLU
126
A
ILE
127
n
147
ILE
127
A
ASP
128
n
148
ASP
128
A
GLU
129
n
149
GLU
129
A
GLU
130
n
150
GLU
130
A
TRP
131
n
151
TRP
131
A
SER
132
n
152
SER
132
A
ILE
133
n
153
ILE
133
A
GLY
134
n
154
GLY
134
A
ASP
135
n
155
ASP
135
A
TYR
136
n
156
TYR
136
A
VAL
137
n
157
VAL
137
A
LEU
138
n
158
LEU
138
A
THR
139
n
159
THR
139
A
GLY
140
n
160
GLY
140
A
GLY
141
n
161
GLY
141
A
GLU
142
n
162
GLU
142
A
LEU
143
n
163
LEU
143
A
PRO
144
n
164
PRO
144
A
ALA
145
n
165
ALA
145
A
MET
146
n
166
MET
146
A
THR
147
n
167
THR
147
A
LEU
148
n
168
LEU
148
A
ILE
149
n
169
ILE
149
A
ASP
150
n
170
ASP
150
A
ALA
151
n
171
ALA
151
A
VAL
152
n
172
VAL
152
A
ALA
153
n
173
ALA
153
A
ARG
154
n
174
ARG
154
A
PHE
155
n
175
PHE
155
A
ILE
156
n
176
ILE
156
A
PRO
157
n
177
PRO
157
A
GLY
158
n
178
GLY
158
A
VAL
159
n
179
VAL
159
A
LEU
160
n
180
LEU
160
A
n
181
161
A
n
182
162
A
n
183
163
A
n
184
164
A
n
185
165
A
n
186
166
A
n
187
167
A
n
188
168
A
n
189
169
A
SER
170
n
190
SER
170
A
PHE
171
n
191
PHE
171
A
ALA
172
n
192
ALA
172
A
ASP
173
n
193
ASP
173
A
GLY
174
n
194
GLY
174
A
LEU
175
n
195
LEU
175
A
LEU
176
n
196
LEU
176
A
ASP
177
n
197
ASP
177
A
CYS
178
n
198
CYS
178
A
PRO
179
n
199
PRO
179
A
HIS
180
n
200
HIS
180
A
TYR
181
n
201
TYR
181
A
THR
182
n
202
THR
182
A
ARG
183
n
203
ARG
183
A
PRO
184
n
204
PRO
184
A
GLU
185
n
205
GLU
185
A
VAL
186
n
206
VAL
186
A
LEU
187
n
207
LEU
187
A
GLU
188
n
208
GLU
188
A
GLY
189
n
209
GLY
189
A
LEU
190
n
210
LEU
190
A
THR
191
n
211
THR
191
A
VAL
192
n
212
VAL
192
A
PRO
193
n
213
PRO
193
A
PRO
194
n
214
PRO
194
A
VAL
195
n
215
VAL
195
A
LEU
196
n
216
LEU
196
A
MET
197
n
217
MET
197
A
SER
198
n
218
SER
198
A
GLY
199
n
219
GLY
199
A
HIS
200
n
220
HIS
200
A
HIS
201
n
221
HIS
201
A
GLU
202
n
222
GLU
202
A
GLU
203
n
223
GLU
203
A
ILE
204
n
224
ILE
204
A
ARG
205
n
225
ARG
205
A
LYS
206
n
226
LYS
206
A
TRP
207
n
227
TRP
207
A
ARG
208
n
228
ARG
208
A
LEU
209
n
229
LEU
209
A
LYS
210
n
230
LYS
210
A
GLN
211
n
231
GLN
211
A
SER
212
n
232
SER
212
A
LEU
213
n
233
LEU
213
A
GLN
214
n
234
GLN
214
A
ARG
215
n
235
ARG
215
A
THR
216
n
236
THR
216
A
TRP
217
n
237
TRP
217
A
LEU
218
n
238
LEU
218
A
ARG
219
n
239
ARG
219
A
ARG
220
n
240
ARG
220
A
PRO
221
n
241
PRO
221
A
GLU
222
n
242
GLU
222
A
LEU
223
n
243
LEU
223
A
LEU
224
n
244
LEU
224
A
GLU
225
n
245
GLU
225
A
GLY
226
n
246
GLY
226
A
LEU
227
n
247
LEU
227
A
ALA
228
n
248
ALA
228
A
LEU
229
n
249
LEU
229
A
THR
230
n
250
THR
230
A
ASP
231
n
251
ASP
231
A
GLU
232
n
252
GLU
232
A
GLN
233
n
253
GLN
233
A
ARG
234
n
254
ARG
234
A
LYS
235
n
255
LYS
235
A
LEU
236
n
256
LEU
236
A
LEU
237
n
257
LEU
237
A
LYS
238
n
258
LYS
238
A
GLU
239
n
259
GLU
239
A
ALA
240
n
260
ALA
240
A
GLN
241
n
261
GLN
241
A
ALA
242
n
262
ALA
242
A
GLU
243
n
263
GLU
243
A
HIS
244
n
264
HIS
244
A
ASN
245
n
265
ASN
245
A
SER
246
n
266
SER
246
A
LEU
247
n
267
LEU
247
A
GLU
248
n
268
GLU
248
A
HIS
249
n
269
HIS
249
A
HIS
250
n
270
HIS
250
A
n
271
251
A
n
272
252
A
n
273
253
A
n
274
254
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
7030
-24
22120
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
16_453
y-2/3,x+2/3,-z-4/3
crystal symmetry operation
-93.6880000000
54.0907920198
-236.8893333333
A
O
LYS
32
A
O
LYS
52
A
N
ILE
3
A
N
ILE
23
A
N
GLY
4
A
N
GLY
24
A
O
LEU
110
A
O
LEU
130
A
O
VAL
111
A
O
VAL
131
A
N
ILE
85
A
N
ILE
105
A
N
TYR
86
A
N
TYR
106
A
O
GLU
129
A
O
GLU
149
A
O
GLU
130
A
O
GLU
150
A
N
ARG
92
A
N
ARG
112
A
N
ASP
51
A
N
ASP
71
A
O
LEU
61
A
O
LEU
81
A
N
LEU
187
A
N
LEU
207
A
O
LEU
190
A
O
LEU
210
1
A
MET
-19
A
MET
1
1
Y
1
A
GLY
-18
A
GLY
2
1
Y
1
A
SER
-17
A
SER
3
1
Y
1
A
SER
-16
A
SER
4
1
Y
1
A
HIS
-15
A
HIS
5
1
Y
1
A
HIS
-14
A
HIS
6
1
Y
1
A
HIS
-13
A
HIS
7
1
Y
1
A
HIS
-12
A
HIS
8
1
Y
1
A
HIS
-11
A
HIS
9
1
Y
1
A
HIS
-10
A
HIS
10
1
Y
1
A
SER
-9
A
SER
11
1
Y
1
A
SER
-8
A
SER
12
1
Y
1
A
GLY
-7
A
GLY
13
1
Y
1
A
LEU
-6
A
LEU
14
1
Y
1
A
VAL
-5
A
VAL
15
1
Y
1
A
PRO
-4
A
PRO
16
1
Y
1
A
ARG
-3
A
ARG
17
1
Y
1
A
GLY
-2
A
GLY
18
1
Y
1
A
GLY
161
A
GLY
181
1
Y
1
A
LYS
162
A
LYS
182
1
Y
1
A
GLN
163
A
GLN
183
1
Y
1
A
ALA
164
A
ALA
184
1
Y
1
A
SER
165
A
SER
185
1
Y
1
A
ALA
166
A
ALA
186
1
Y
1
A
GLU
167
A
GLU
187
1
Y
1
A
GLU
168
A
GLU
188
1
Y
1
A
ASP
169
A
ASP
189
1
Y
1
A
HIS
251
A
HIS
271
1
Y
1
A
HIS
252
A
HIS
272
1
Y
1
A
HIS
253
A
HIS
273
1
Y
1
A
HIS
254
A
HIS
274
1
Y
1
A
TYR
115
60.37
-137.57
1
A
PHE
171
64.88
-5.58
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
CIS_PEPTIDE.PARAM
SAH.PARAM
SAH.TOP
23.8
2.82
2.47
0.00
2.82
0.00
-5.65
0.215
0.004
0.184
0.184
1.80
19.97
2787
28092
28092
9.9
99.8
RANDOM
2529932.44
0.0
1
RESTRAINED
THROUGHOUT
0
MOLECULAR REPLACEMENT
Engh & Huber
FLAT MODEL
52.7063
0.391624
0.22
0.18
5.00
0.11
0.11
1.80
19.97
278
2229
26
0
1925
0.005
1.1
22.4
0.90
1.32
1.50
2.12
2.00
2.16
2.00
3.21
2.50
0.256
0.012
0.233
1.91
459
4187
6
9.9
100.0
18.9
1.80
20.0
1UAL
167465
28092
1.0
1.0
0.075
1
6.5
99.9
1.80
1.90
2.0
0.372
1
99.9
refinement
CNS
1.1
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
CNS
Crystal structure of tRNA(m1G37)methyltransferase: Insight into tRNA recognition
1
N
N
2
N
N
3
N
N
A
PHE
9
A
PHE
29
HELX_P
A
MET
12
A
MET
32
5
1
4
A
PHE
13
A
PHE
33
HELX_P
A
GLU
18
A
GLU
38
1
2
6
A
PHE
19
A
PHE
39
HELX_P
A
HIS
28
A
HIS
48
1
3
10
A
ASN
37
A
ASN
57
HELX_P
A
THR
42
A
THR
62
5
4
6
A
MET
63
A
MET
83
HELX_P
A
GLY
79
A
GLY
99
1
5
17
A
ASP
95
A
ASP
115
HELX_P
A
ALA
103
A
ALA
123
1
6
9
A
ASP
119
A
ASP
139
HELX_P
A
ILE
127
A
ILE
147
1
7
9
A
GLY
141
A
GLY
161
HELX_P
A
ARG
154
A
ARG
174
1
8
14
A
PRO
193
A
PRO
213
HELX_P
A
SER
198
A
SER
218
5
9
6
A
HIS
200
A
HIS
220
HELX_P
A
ARG
220
A
ARG
240
1
10
21
A
ARG
220
A
ARG
240
HELX_P
A
GLY
226
A
GLY
246
1
11
7
A
THR
230
A
THR
250
HELX_P
A
ASN
245
A
ASN
265
1
12
16
TRANSFERASE
methyltransferase, SPOUT class, trmD, tRNA(m1G37)methyltransferase, tRNA modification, TRANSFERASE
A
ARG
183
A
ARG
203
1
A
PRO
184
A
PRO
204
0.63
TRMD_HAEIN
UNP
1
P43912
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGE
GAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL
GKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEA
QAEHNS
1
246
1UAL
1
246
P43912
A
1
21
266
1
expression tag
MET
-19
1UAL
A
P43912
UNP
1
1
expression tag
GLY
-18
1UAL
A
P43912
UNP
2
1
expression tag
SER
-17
1UAL
A
P43912
UNP
3
1
expression tag
SER
-16
1UAL
A
P43912
UNP
4
1
expression tag
HIS
-15
1UAL
A
P43912
UNP
5
1
expression tag
HIS
-14
1UAL
A
P43912
UNP
6
1
expression tag
HIS
-13
1UAL
A
P43912
UNP
7
1
expression tag
HIS
-12
1UAL
A
P43912
UNP
8
1
expression tag
HIS
-11
1UAL
A
P43912
UNP
9
1
expression tag
HIS
-10
1UAL
A
P43912
UNP
10
1
expression tag
SER
-9
1UAL
A
P43912
UNP
11
1
expression tag
SER
-8
1UAL
A
P43912
UNP
12
1
expression tag
GLY
-7
1UAL
A
P43912
UNP
13
1
expression tag
LEU
-6
1UAL
A
P43912
UNP
14
1
expression tag
VAL
-5
1UAL
A
P43912
UNP
15
1
expression tag
PRO
-4
1UAL
A
P43912
UNP
16
1
expression tag
ARG
-3
1UAL
A
P43912
UNP
17
1
expression tag
GLY
-2
1UAL
A
P43912
UNP
18
1
expression tag
SER
-1
1UAL
A
P43912
UNP
19
1
expression tag
HIS
0
1UAL
A
P43912
UNP
20
1
expression tag
LEU
247
1UAL
A
P43912
UNP
267
1
expression tag
GLU
248
1UAL
A
P43912
UNP
268
1
expression tag
HIS
249
1UAL
A
P43912
UNP
269
1
expression tag
HIS
250
1UAL
A
P43912
UNP
270
1
expression tag
HIS
251
1UAL
A
P43912
UNP
271
1
expression tag
HIS
252
1UAL
A
P43912
UNP
272
1
expression tag
HIS
253
1UAL
A
P43912
UNP
273
1
expression tag
HIS
254
1UAL
A
P43912
UNP
274
6
2
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
LEU
31
A
LEU
51
A
TRP
36
A
TRP
56
A
MET
1
A
MET
21
A
ILE
6
A
ILE
26
A
LYS
107
A
LYS
127
A
VAL
111
A
VAL
131
A
LYS
83
A
LYS
103
A
LEU
87
A
LEU
107
A
GLU
129
A
GLU
149
A
SER
132
A
SER
152
A
ARG
92
A
ARG
112
A
LYS
93
A
LYS
113
A
ASP
50
A
ASP
70
A
ASP
51
A
ASP
71
A
LEU
61
A
LEU
81
A
MET
62
A
MET
82
A
VAL
186
A
VAL
206
A
LEU
187
A
LEU
207
A
LEU
190
A
LEU
210
A
THR
191
A
THR
211
BINDING SITE FOR RESIDUE SAH A 301
A
SAH
301
Software
22
A
TYR
86
A
TYR
106
22
1_555
A
LEU
87
A
LEU
107
22
1_555
A
SER
88
A
SER
108
22
1_555
A
PRO
89
A
PRO
109
22
1_555
A
GLN
90
A
GLN
110
22
1_555
A
GLY
113
A
GLY
133
22
1_555
A
TYR
115
A
TYR
135
22
1_555
A
GLU
116
A
GLU
136
22
1_555
A
SER
132
A
SER
152
22
1_555
A
ILE
133
A
ILE
153
22
1_555
A
GLY
134
A
GLY
154
22
1_555
A
TYR
136
A
TYR
156
22
1_555
A
VAL
137
A
VAL
157
22
1_555
A
LEU
138
A
LEU
158
22
1_555
A
THR
139
A
THR
159
22
1_555
A
GLY
140
A
GLY
160
22
1_555
A
GLY
141
A
GLY
161
22
1_555
A
PRO
144
A
PRO
164
22
1_555
A
SER
170
A
SER
190
22
16_453
A
ASP
177
A
ASP
197
22
16_453
A
HOH
1208
C
HOH
22
1_555
A
HOH
1209
C
HOH
22
1_555
155
H 3 2