0.022727
0.000000
0.000000
0.000000
0.015221
0.000000
0.000000
0.000000
0.008540
0.00000
0.00000
0.00000
Houbaviy, H.B.
Usheva, A.
Shenk, T.
0000-0002-2487-9713
Burley, S.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
44.000
65.700
117.100
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
N
475
N
O
N
476
N
O
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
N
493
N
C
N
494
N
C
N
495
N
O
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
doub
N
473
N
sing
Y
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
doub
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
93
13577
13582
10.1073/pnas.93.24.13577
8942976
Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator.
1996
0000-0002-2487-9713
10.2210/pdb1ubd/pdb
pdb_00001ubd
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
IMAGE PLATE
1995-06-16
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.0
X12B
NSLS
SYNCHROTRON
NSLS BEAMLINE X12B
6164.989
DNA (5'-D(*AP*GP*GP*GP*TP*CP*TP*CP*CP*AP*TP*TP*TP*TP*GP*AP*A P*GP*CP*G)-3')
1
syn
polymer
6102.968
DNA (5'-D(*CP*GP*CP*TP*TP*CP*AP*AP*AP*AP*TP*GP*GP*AP*GP*AP*C P*CP*CP*T)-3')
1
syn
polymer
14189.473
PROTEIN (YY1 ZINC FINGER DOMAIN)
1
man
polymer
65.409
ZINC ION
4
syn
non-polymer
18.015
water
87
nat
water
MUTANT D291M, A292E
no
no
(DA)(DG)(DG)(DG)(DT)(DC)(DT)(DC)(DC)(DA)(DT)(DT)(DT)(DT)(DG)(DA)(DA)(DG)(DC)(DG)
AGGGTCTCCATTTTGAAGCG
A
polydeoxyribonucleotide
no
no
(DC)(DG)(DC)(DT)(DT)(DC)(DA)(DA)(DA)(DA)(DT)(DG)(DG)(DA)(DG)(DA)(DC)(DC)(DC)(DT)
CGCTTCAAAATGGAGACCCT
B
polydeoxyribonucleotide
no
no
MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL
RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ
MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL
RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
3.14
60.84
-6.921
1
20
A
1
B
40
-25.004
A_DA1:DT40_B
1
-6.099
2.051
0.178
-0.188
13.461
1
19
A
2
B
39
-3.659
A_DG2:DC39_B
2
6.830
0.926
0.413
-0.352
6.228
1
19
A
3
B
38
-3.166
A_DG3:DC38_B
3
-3.808
0.437
0.417
-0.314
9.476
1
19
A
4
B
37
-3.528
A_DG4:DC37_B
4
-14.708
-0.269
0.349
-0.273
1.007
1
20
A
5
B
36
-1.992
A_DT5:DA36_B
5
-15.345
0.021
0.421
-0.404
-17.777
1
19
A
6
B
35
-2.152
A_DC6:DG35_B
6
-18.049
-0.091
0.791
-0.362
-7.508
1
20
A
7
B
34
2.360
A_DT7:DA34_B
7
-13.400
-0.845
0.328
-0.115
-2.653
1
19
A
8
B
33
-2.592
A_DC8:DG33_B
8
-8.736
0.610
0.211
-0.218
-2.521
1
19
A
9
B
32
0.358
A_DC9:DG32_B
9
-6.564
0.144
0.235
-0.262
8.787
1
20
A
10
B
31
-3.250
A_DA10:DT31_B
10
-9.813
0.503
-0.109
-0.235
-6.459
1
20
A
11
B
30
2.117
A_DT11:DA30_B
11
-19.007
0.109
-0.352
-0.348
-4.439
1
20
A
12
B
29
6.274
A_DT12:DA29_B
12
-15.929
-0.019
-0.439
-0.067
-1.626
1
20
A
13
B
28
3.046
A_DT13:DA28_B
13
-11.965
0.151
-0.148
-0.163
4.614
1
20
A
14
B
27
1.194
A_DT14:DA27_B
14
-20.236
-0.870
0.024
-0.230
-11.452
1
19
A
15
B
26
-2.066
A_DG15:DC26_B
15
-15.425
0.256
-0.799
-0.463
5.576
1
20
A
16
B
25
7.825
A_DA16:DT25_B
16
-9.324
-0.430
0.120
-0.256
-4.508
1
20
A
17
B
24
-16.954
A_DA17:DT24_B
17
-5.332
1.407
0.355
-0.142
-3.557
1
19
A
18
B
23
-0.474
A_DG18:DC23_B
18
-5.642
0.257
0.356
-0.359
19.695
1
19
A
19
B
22
0.524
A_DC19:DG22_B
19
-8.981
-0.706
-0.479
-0.281
10.840
1
A
20
B
21
15.093
A_DG20:DC21_B
20
-16.819
1.589
0.989
0.285
2.743
27.172
A
A
1
2
2.834
B
B
40
39
2.803
1.328
0.513
0.508
AA_DA1DG2:DC39DT40_BB
1
-3.301
7.047
26.943
0.796
-1.800
3.616
35.606
A
A
2
3
-1.147
B
B
39
38
3.606
-0.701
-0.585
0.452
AA_DG2DG3:DC38DC39_BB
2
-1.427
2.334
35.571
0.851
0.727
3.096
31.167
A
A
3
4
7.656
B
B
38
37
3.103
4.100
-0.688
-0.127
AA_DG3DG4:DC37DC38_BB
3
-1.825
3.408
30.850
-0.980
0.948
3.680
36.086
A
A
4
5
-13.403
B
B
37
36
3.581
-8.233
0.432
-0.911
AA_DG4DT5:DA36DC37_BB
4
-1.032
1.680
35.150
-0.160
-0.862
3.799
40.927
A
A
5
6
-1.109
B
B
36
35
3.742
-0.774
0.694
-0.089
AA_DT5DC6:DG35DA36_BB
5
4.975
-7.131
40.629
-0.030
-0.362
2.892
29.018
A
A
6
7
6.834
B
B
35
34
2.967
3.417
-0.964
-0.338
AA_DC6DT7:DA34DG35_BB
6
0.469
-0.939
28.817
-1.350
2.016
3.059
39.003
A
A
7
8
-9.283
B
B
34
33
3.125
-6.171
0.602
-0.038
AA_DT7DC8:DG33DA34_BB
7
-2.106
3.168
38.475
0.653
-1.144
3.464
33.831
A
A
8
9
3.268
B
B
33
32
3.457
1.894
0.434
-0.255
AA_DC8DC9:DG32DG33_BB
8
5.254
-9.068
33.380
-0.765
0.158
2.814
38.465
A
A
9
10
12.356
B
B
32
31
2.875
8.076
-0.110
0.074
AA_DC9DA10:DT31DG32_BB
9
2.969
-4.542
37.526
-0.773
0.492
3.710
32.300
A
A
10
11
1.475
B
B
31
30
3.685
0.819
0.592
-0.617
AA_DA10DT11:DA30DT31_BB
10
3.376
-6.079
32.117
-1.274
-0.386
3.224
31.339
A
A
11
12
-2.526
B
B
30
29
3.210
-1.364
-0.131
-0.392
AA_DT11DT12:DA29DA30_BB
11
0.003
-0.006
31.310
-0.473
0.244
3.125
38.090
A
A
12
13
7.126
B
B
29
28
3.210
4.635
0.314
-0.227
AA_DT12DT13:DA28DA29_BB
12
-3.230
4.966
37.684
-0.919
-0.879
3.159
29.018
A
A
13
14
-8.648
B
B
28
27
3.086
-4.317
0.025
-0.734
AA_DT13DT14:DA27DA28_BB
13
1.079
-2.161
28.682
-0.553
0.179
3.551
39.257
A
A
14
15
17.532
B
B
27
26
3.862
11.597
-0.150
-0.417
AA_DT14DG15:DC26DA27_BB
14
3.880
-5.865
37.375
-2.229
0.761
2.719
34.674
A
A
15
16
-2.232
B
B
26
25
2.867
-1.309
0.024
0.054
AA_DG15DA16:DT25DC26_BB
15
-10.870
18.537
32.951
0.267
-1.503
3.528
43.807
A
A
16
17
-7.960
B
B
25
24
3.450
-5.921
-1.138
-0.586
AA_DA16DA17:DT24DT25_BB
16
-1.331
1.789
43.405
-0.181
1.389
3.069
30.942
A
A
17
18
6.063
B
B
24
23
3.176
3.227
0.661
-0.485
AA_DA17DG18:DC23DT24_BB
17
-1.758
3.302
30.728
-1.507
-1.564
2.750
20.773
A
A
18
19
-17.757
B
B
23
22
2.848
-5.966
0.191
-1.320
AA_DG18DC19:DG22DC23_BB
18
11.116
-33.084
16.537
-1.197
4.061
3.338
59.045
A
A
19
20
1.226
B
B
22
21
3.584
1.205
1.836
0.899
AA_DC19DG20:DC21DG22_BB
19
-8.228
8.372
58.509
0.846
-2.311
audit_author
citation_author
pdbx_struct_conn_angle
struct_conn
struct_site
database_2
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Structure summary
Database references
Data collection
1
0
1996-12-23
1
1
2008-05-22
1
2
2011-07-13
1
3
2021-02-03
1
4
2021-11-03
1
5
2024-02-14
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Y
NDB
1996-10-04
REL
ZN
ZINC ION
HOH
water
ZN
501
4
ZN
ZN
501
C
ZN
502
4
ZN
ZN
502
C
ZN
503
4
ZN
ZN
503
C
ZN
504
4
ZN
ZN
504
C
HOH
613
5
HOH
HOH
613
A
HOH
614
5
HOH
HOH
614
A
HOH
615
5
HOH
HOH
615
A
HOH
619
5
HOH
HOH
619
A
HOH
620
5
HOH
HOH
620
A
HOH
623
5
HOH
HOH
623
A
HOH
624
5
HOH
HOH
624
A
HOH
630
5
HOH
HOH
630
A
HOH
633
5
HOH
HOH
633
A
HOH
636
5
HOH
HOH
636
A
HOH
638
5
HOH
HOH
638
A
HOH
646
5
HOH
HOH
646
A
HOH
652
5
HOH
HOH
652
A
HOH
654
5
HOH
HOH
654
A
HOH
655
5
HOH
HOH
655
A
HOH
660
5
HOH
HOH
660
A
HOH
685
5
HOH
HOH
685
A
HOH
687
5
HOH
HOH
687
A
HOH
690
5
HOH
HOH
690
A
HOH
691
5
HOH
HOH
691
A
HOH
695
5
HOH
HOH
695
A
HOH
696
5
HOH
HOH
696
A
HOH
601
5
HOH
HOH
601
B
HOH
604
5
HOH
HOH
604
B
HOH
605
5
HOH
HOH
605
B
HOH
607
5
HOH
HOH
607
B
HOH
610
5
HOH
HOH
610
B
HOH
616
5
HOH
HOH
616
B
HOH
625
5
HOH
HOH
625
B
HOH
626
5
HOH
HOH
626
B
HOH
628
5
HOH
HOH
628
B
HOH
629
5
HOH
HOH
629
B
HOH
632
5
HOH
HOH
632
B
HOH
635
5
HOH
HOH
635
B
HOH
640
5
HOH
HOH
640
B
HOH
645
5
HOH
HOH
645
B
HOH
651
5
HOH
HOH
651
B
HOH
669
5
HOH
HOH
669
B
HOH
671
5
HOH
HOH
671
B
HOH
672
5
HOH
HOH
672
B
HOH
676
5
HOH
HOH
676
B
HOH
682
5
HOH
HOH
682
B
HOH
683
5
HOH
HOH
683
B
HOH
686
5
HOH
HOH
686
B
HOH
688
5
HOH
HOH
688
B
HOH
689
5
HOH
HOH
689
B
HOH
693
5
HOH
HOH
693
B
HOH
600
5
HOH
HOH
600
C
HOH
603
5
HOH
HOH
603
C
HOH
608
5
HOH
HOH
608
C
HOH
609
5
HOH
HOH
609
C
HOH
611
5
HOH
HOH
611
C
HOH
612
5
HOH
HOH
612
C
HOH
617
5
HOH
HOH
617
C
HOH
618
5
HOH
HOH
618
C
HOH
621
5
HOH
HOH
621
C
HOH
622
5
HOH
HOH
622
C
HOH
631
5
HOH
HOH
631
C
HOH
637
5
HOH
HOH
637
C
HOH
639
5
HOH
HOH
639
C
HOH
642
5
HOH
HOH
642
C
HOH
643
5
HOH
HOH
643
C
HOH
644
5
HOH
HOH
644
C
HOH
647
5
HOH
HOH
647
C
HOH
649
5
HOH
HOH
649
C
HOH
650
5
HOH
HOH
650
C
HOH
656
5
HOH
HOH
656
C
HOH
657
5
HOH
HOH
657
C
HOH
658
5
HOH
HOH
658
C
HOH
659
5
HOH
HOH
659
C
HOH
661
5
HOH
HOH
661
C
HOH
663
5
HOH
HOH
663
C
HOH
664
5
HOH
HOH
664
C
HOH
665
5
HOH
HOH
665
C
HOH
668
5
HOH
HOH
668
C
HOH
670
5
HOH
HOH
670
C
HOH
673
5
HOH
HOH
673
C
HOH
674
5
HOH
HOH
674
C
HOH
675
5
HOH
HOH
675
C
HOH
677
5
HOH
HOH
677
C
HOH
678
5
HOH
HOH
678
C
HOH
679
5
HOH
HOH
679
C
HOH
681
5
HOH
HOH
681
C
HOH
684
5
HOH
HOH
684
C
HOH
692
5
HOH
HOH
692
C
HOH
694
5
HOH
HOH
694
C
HOH
698
5
HOH
HOH
698
C
A
1
n
1
DA
1
A
G
2
n
2
DG
2
A
G
3
n
3
DG
3
A
G
4
n
4
DG
4
A
T
5
n
5
DT
5
A
C
6
n
6
DC
6
A
T
7
n
7
DT
7
A
C
8
n
8
DC
8
A
C
9
n
9
DC
9
A
A
10
n
10
DA
10
A
T
11
n
11
DT
11
A
T
12
n
12
DT
12
A
T
13
n
13
DT
13
A
T
14
n
14
DT
14
A
G
15
n
15
DG
15
A
A
16
n
16
DA
16
A
A
17
n
17
DA
17
A
G
18
n
18
DG
18
A
C
19
n
19
DC
19
A
G
20
n
20
DG
20
A
C
21
n
1
DC
21
B
G
22
n
2
DG
22
B
C
23
n
3
DC
23
B
T
24
n
4
DT
24
B
T
25
n
5
DT
25
B
C
26
n
6
DC
26
B
A
27
n
7
DA
27
B
A
28
n
8
DA
28
B
A
29
n
9
DA
29
B
A
30
n
10
DA
30
B
T
31
n
11
DT
31
B
G
32
n
12
DG
32
B
G
33
n
13
DG
33
B
A
34
n
14
DA
34
B
G
35
n
15
DG
35
B
A
36
n
16
DA
36
B
C
37
n
17
DC
37
B
C
38
n
18
DC
38
B
C
39
n
19
DC
39
B
T
40
n
20
DT
40
B
n
1
291
C
n
2
292
C
n
3
293
C
n
4
294
C
THR
295
n
5
THR
295
C
ILE
296
n
6
ILE
296
C
ALA
297
n
7
ALA
297
C
CYS
298
n
8
CYS
298
C
PRO
299
n
9
PRO
299
C
HIS
300
n
10
HIS
300
C
LYS
301
n
11
LYS
301
C
GLY
302
n
12
GLY
302
C
CYS
303
n
13
CYS
303
C
THR
304
n
14
THR
304
C
LYS
305
n
15
LYS
305
C
MET
306
n
16
MET
306
C
PHE
307
n
17
PHE
307
C
ARG
308
n
18
ARG
308
C
ASP
309
n
19
ASP
309
C
ASN
310
n
20
ASN
310
C
SER
311
n
21
SER
311
C
ALA
312
n
22
ALA
312
C
MET
313
n
23
MET
313
C
ARG
314
n
24
ARG
314
C
LYS
315
n
25
LYS
315
C
HIS
316
n
26
HIS
316
C
LEU
317
n
27
LEU
317
C
HIS
318
n
28
HIS
318
C
THR
319
n
29
THR
319
C
HIS
320
n
30
HIS
320
C
GLY
321
n
31
GLY
321
C
PRO
322
n
32
PRO
322
C
ARG
323
n
33
ARG
323
C
VAL
324
n
34
VAL
324
C
HIS
325
n
35
HIS
325
C
VAL
326
n
36
VAL
326
C
CYS
327
n
37
CYS
327
C
ALA
328
n
38
ALA
328
C
GLU
329
n
39
GLU
329
C
CYS
330
n
40
CYS
330
C
GLY
331
n
41
GLY
331
C
LYS
332
n
42
LYS
332
C
ALA
333
n
43
ALA
333
C
PHE
334
n
44
PHE
334
C
VAL
335
n
45
VAL
335
C
GLU
336
n
46
GLU
336
C
SER
337
n
47
SER
337
C
SER
338
n
48
SER
338
C
LYS
339
n
49
LYS
339
C
LEU
340
n
50
LEU
340
C
LYS
341
n
51
LYS
341
C
ARG
342
n
52
ARG
342
C
HIS
343
n
53
HIS
343
C
GLN
344
n
54
GLN
344
C
LEU
345
n
55
LEU
345
C
VAL
346
n
56
VAL
346
C
HIS
347
n
57
HIS
347
C
THR
348
n
58
THR
348
C
GLY
349
n
59
GLY
349
C
GLU
350
n
60
GLU
350
C
LYS
351
n
61
LYS
351
C
PRO
352
n
62
PRO
352
C
PHE
353
n
63
PHE
353
C
GLN
354
n
64
GLN
354
C
CYS
355
n
65
CYS
355
C
THR
356
n
66
THR
356
C
PHE
357
n
67
PHE
357
C
GLU
358
n
68
GLU
358
C
GLY
359
n
69
GLY
359
C
CYS
360
n
70
CYS
360
C
GLY
361
n
71
GLY
361
C
LYS
362
n
72
LYS
362
C
ARG
363
n
73
ARG
363
C
PHE
364
n
74
PHE
364
C
SER
365
n
75
SER
365
C
LEU
366
n
76
LEU
366
C
ASP
367
n
77
ASP
367
C
PHE
368
n
78
PHE
368
C
ASN
369
n
79
ASN
369
C
LEU
370
n
80
LEU
370
C
ARG
371
n
81
ARG
371
C
THR
372
n
82
THR
372
C
HIS
373
n
83
HIS
373
C
VAL
374
n
84
VAL
374
C
ARG
375
n
85
ARG
375
C
ILE
376
n
86
ILE
376
C
HIS
377
n
87
HIS
377
C
THR
378
n
88
THR
378
C
GLY
379
n
89
GLY
379
C
ASP
380
n
90
ASP
380
C
ARG
381
n
91
ARG
381
C
PRO
382
n
92
PRO
382
C
TYR
383
n
93
TYR
383
C
VAL
384
n
94
VAL
384
C
CYS
385
n
95
CYS
385
C
PRO
386
n
96
PRO
386
C
PHE
387
n
97
PHE
387
C
ASP
388
n
98
ASP
388
C
GLY
389
n
99
GLY
389
C
CYS
390
n
100
CYS
390
C
ASN
391
n
101
ASN
391
C
LYS
392
n
102
LYS
392
C
LYS
393
n
103
LYS
393
C
PHE
394
n
104
PHE
394
C
ALA
395
n
105
ALA
395
C
GLN
396
n
106
GLN
396
C
SER
397
n
107
SER
397
C
THR
398
n
108
THR
398
C
ASN
399
n
109
ASN
399
C
LEU
400
n
110
LEU
400
C
LYS
401
n
111
LYS
401
C
SER
402
n
112
SER
402
C
HIS
403
n
113
HIS
403
C
ILE
404
n
114
ILE
404
C
LEU
405
n
115
LEU
405
C
THR
406
n
116
THR
406
C
HIS
407
n
117
HIS
407
C
ALA
408
n
118
ALA
408
C
n
119
409
C
n
120
410
C
n
121
411
C
n
122
412
C
n
123
413
C
n
124
414
C
author_defined_assembly
3
trimeric
C
CYS
298
C
SG
CYS
8
1_555
C
ZN
501
D
ZN
ZN
1_555
C
CYS
303
C
SG
CYS
13
1_555
110.4
C
CYS
298
C
SG
CYS
8
1_555
C
ZN
501
D
ZN
ZN
1_555
C
HIS
316
C
NE2
HIS
26
1_555
106.9
C
CYS
303
C
SG
CYS
13
1_555
C
ZN
501
D
ZN
ZN
1_555
C
HIS
316
C
NE2
HIS
26
1_555
109.3
C
CYS
298
C
SG
CYS
8
1_555
C
ZN
501
D
ZN
ZN
1_555
C
HIS
320
C
NE2
HIS
30
1_555
109.1
C
CYS
303
C
SG
CYS
13
1_555
C
ZN
501
D
ZN
ZN
1_555
C
HIS
320
C
NE2
HIS
30
1_555
110.9
C
HIS
316
C
NE2
HIS
26
1_555
C
ZN
501
D
ZN
ZN
1_555
C
HIS
320
C
NE2
HIS
30
1_555
110.2
C
CYS
327
C
SG
CYS
37
1_555
C
ZN
502
E
ZN
ZN
1_555
C
CYS
330
C
SG
CYS
40
1_555
112.6
C
CYS
327
C
SG
CYS
37
1_555
C
ZN
502
E
ZN
ZN
1_555
C
HIS
343
C
NE2
HIS
53
1_555
108.7
C
CYS
330
C
SG
CYS
40
1_555
C
ZN
502
E
ZN
ZN
1_555
C
HIS
343
C
NE2
HIS
53
1_555
107.2
C
CYS
327
C
SG
CYS
37
1_555
C
ZN
502
E
ZN
ZN
1_555
C
HIS
347
C
NE2
HIS
57
1_555
108.7
C
CYS
330
C
SG
CYS
40
1_555
C
ZN
502
E
ZN
ZN
1_555
C
HIS
347
C
NE2
HIS
57
1_555
111.6
C
HIS
343
C
NE2
HIS
53
1_555
C
ZN
502
E
ZN
ZN
1_555
C
HIS
347
C
NE2
HIS
57
1_555
107.9
C
CYS
355
C
SG
CYS
65
1_555
C
ZN
503
F
ZN
ZN
1_555
C
CYS
360
C
SG
CYS
70
1_555
110.2
C
CYS
355
C
SG
CYS
65
1_555
C
ZN
503
F
ZN
ZN
1_555
C
HIS
373
C
NE2
HIS
83
1_555
115.3
C
CYS
360
C
SG
CYS
70
1_555
C
ZN
503
F
ZN
ZN
1_555
C
HIS
373
C
NE2
HIS
83
1_555
107.8
C
CYS
355
C
SG
CYS
65
1_555
C
ZN
503
F
ZN
ZN
1_555
C
HIS
377
C
NE2
HIS
87
1_555
105.5
C
CYS
360
C
SG
CYS
70
1_555
C
ZN
503
F
ZN
ZN
1_555
C
HIS
377
C
NE2
HIS
87
1_555
110.9
C
HIS
373
C
NE2
HIS
83
1_555
C
ZN
503
F
ZN
ZN
1_555
C
HIS
377
C
NE2
HIS
87
1_555
107.1
C
CYS
385
C
SG
CYS
95
1_555
C
ZN
504
G
ZN
ZN
1_555
C
CYS
390
C
SG
CYS
100
1_555
106.5
C
CYS
385
C
SG
CYS
95
1_555
C
ZN
504
G
ZN
ZN
1_555
C
HIS
403
C
NE2
HIS
113
1_555
111.8
C
CYS
390
C
SG
CYS
100
1_555
C
ZN
504
G
ZN
ZN
1_555
C
HIS
403
C
NE2
HIS
113
1_555
113.9
C
CYS
385
C
SG
CYS
95
1_555
C
ZN
504
G
ZN
ZN
1_555
C
HIS
407
C
NE2
HIS
117
1_555
108.4
C
CYS
390
C
SG
CYS
100
1_555
C
ZN
504
G
ZN
ZN
1_555
C
HIS
407
C
NE2
HIS
117
1_555
109.1
C
HIS
403
C
NE2
HIS
113
1_555
C
ZN
504
G
ZN
ZN
1_555
C
HIS
407
C
NE2
HIS
117
1_555
107.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
C
O
ILE
296
C
O
ILE
6
C
N
PHE
307
C
N
PHE
17
C
O
HIS
325
C
O
HIS
35
C
N
PHE
334
C
N
PHE
44
C
O
PHE
353
C
O
PHE
63
C
N
PHE
364
C
N
PHE
74
1
C
OG1
THR
295
C
OG1
THR
5
1
Y
1
C
CG2
THR
295
C
CG2
THR
5
1
Y
1
C
MET
291
C
MET
1
1
Y
1
C
GLU
292
C
GLU
2
1
Y
1
C
PRO
293
C
PRO
3
1
Y
1
C
ARG
294
C
ARG
4
1
Y
1
C
LYS
409
C
LYS
119
1
Y
1
C
ALA
410
C
ALA
120
1
Y
1
C
LYS
411
C
LYS
121
1
Y
1
C
ASN
412
C
ASN
122
1
Y
1
C
ASN
413
C
ASN
123
1
Y
1
C
GLN
414
C
GLN
124
1
Y
1
A
DA
1
0.071
SIDE CHAIN
1
B
DC
38
0.068
SIDE CHAIN
1
B
DT
40
0.069
SIDE CHAIN
1
-3.96
0.40
104.50
100.54
A
A
A
O4'
C4'
C3'
DA
DA
DA
1
1
1
N
1
2.34
0.30
108.30
110.64
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
1
4.47
0.30
108.30
112.77
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
4.04
0.30
108.30
112.34
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
1
-3.90
0.60
122.90
119.00
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
1
3.31
0.30
108.30
111.61
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
7.87
1.20
119.70
127.57
A
A
A
C3'
O3'
P
DC
DC
DT
6
6
7
Y
1
-6.12
0.80
105.90
99.78
A
A
A
O4'
C1'
C2'
DT
DT
DT
7
7
7
N
1
-5.52
0.60
122.90
117.38
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
1
-7.64
1.00
110.10
102.46
A
A
A
C1'
O4'
C4'
DC
DC
DC
8
8
8
N
1
3.18
0.30
108.30
111.48
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
3.10
0.30
108.30
111.40
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
1
-4.24
0.60
122.90
118.66
A
A
A
C6
C5
C7
DT
DT
DT
12
12
12
N
1
10.05
1.20
119.70
129.75
A
A
A
C3'
O3'
P
DT
DT
DT
12
12
13
Y
1
4.28
0.30
108.30
112.58
A
A
A
O4'
C1'
N1
DT
DT
DT
14
14
14
N
1
2.63
0.30
108.30
110.93
A
A
A
O4'
C1'
N9
DA
DA
DA
16
16
16
N
1
-4.03
0.40
104.50
100.47
A
A
A
O4'
C4'
C3'
DA
DA
DA
17
17
17
N
1
5.11
0.30
108.30
113.41
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
1
-5.55
0.80
102.40
96.85
A
A
A
C3'
C2'
C1'
DC
DC
DC
19
19
19
N
1
3.47
0.30
108.30
111.77
A
A
A
O4'
C1'
N1
DC
DC
DC
19
19
19
N
1
7.23
0.30
108.30
115.53
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
1
7.48
0.30
108.30
115.78
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
1
7.32
0.30
108.30
115.62
B
B
B
O4'
C1'
N1
DT
DT
DT
24
24
24
N
1
3.86
0.30
108.30
112.16
B
B
B
O4'
C1'
N1
DT
DT
DT
25
25
25
N
1
-4.02
0.60
122.90
118.88
B
B
B
C6
C5
C7
DT
DT
DT
25
25
25
N
1
-9.14
1.00
110.10
100.96
B
B
B
C1'
O4'
C4'
DC
DC
DC
26
26
26
N
1
3.92
0.30
108.30
112.22
B
B
B
O4'
C1'
N9
DA
DA
DA
27
27
27
N
1
2.01
0.30
108.30
110.31
B
B
B
O4'
C1'
N9
DA
DA
DA
28
28
28
N
1
-5.88
0.70
108.00
102.12
B
B
B
O4'
C1'
N9
DA
DA
DA
29
29
29
N
1
-6.42
1.00
110.10
103.68
B
B
B
C1'
O4'
C4'
DA
DA
DA
30
30
30
N
1
-6.28
0.80
105.90
99.62
B
B
B
O4'
C1'
C2'
DT
DT
DT
31
31
31
N
1
2.08
0.30
108.30
110.38
B
B
B
O4'
C1'
N1
DT
DT
DT
31
31
31
N
1
-4.05
0.60
122.90
118.85
B
B
B
C6
C5
C7
DT
DT
DT
31
31
31
N
1
4.52
0.30
108.30
112.82
B
B
B
O4'
C1'
N9
DG
DG
DG
32
32
32
N
1
4.57
0.30
108.30
112.87
B
B
B
O4'
C1'
N9
DG
DG
DG
33
33
33
N
1
2.25
0.30
108.30
110.55
B
B
B
O4'
C1'
N9
DA
DA
DA
34
34
34
N
1
6.40
0.30
108.30
114.70
B
B
B
O4'
C1'
N9
DG
DG
DG
35
35
35
N
1
10.38
1.20
119.70
130.08
B
B
B
C3'
O3'
P
DG
DG
DA
35
35
36
Y
1
10.01
1.20
119.70
129.71
B
B
B
C3'
O3'
P
DA
DA
DC
36
36
37
Y
1
3.01
0.30
108.30
111.31
B
B
B
O4'
C1'
N1
DC
DC
DC
37
37
37
N
1
-6.26
1.00
110.10
103.84
B
B
B
C1'
O4'
C4'
DC
DC
DC
38
38
38
N
1
-6.94
0.80
105.90
98.96
B
B
B
O4'
C1'
C2'
DC
DC
DC
38
38
38
N
1
5.81
0.30
108.30
114.11
B
B
B
O4'
C1'
N1
DC
DC
DC
38
38
38
N
1
-2.99
0.40
104.50
101.51
B
B
B
O4'
C4'
C3'
DC
DC
DC
39
39
39
N
1
9.11
0.30
108.30
117.41
B
B
B
O4'
C1'
N1
DT
DT
DT
40
40
40
N
1
-4.31
0.60
122.90
118.59
B
B
B
C6
C5
C7
DT
DT
DT
40
40
40
N
1
9.53
1.50
119.30
128.83
C
C
C
C
N
CA
LYS
PRO
PRO
351
352
352
Y
1
4.81
0.50
120.30
125.11
C
C
C
NE
CZ
NH1
ARG
ARG
ARG
363
363
363
N
1
-4.40
0.50
120.30
115.90
C
C
C
NE
CZ
NH2
ARG
ARG
ARG
363
363
363
N
1
A
A
C5
C7
DT
DT
7
7
0.052
0.006
1.496
1.548
N
1
A
A
C5
C7
DT
DT
11
11
0.039
0.006
1.496
1.535
N
1
B
B
P
O5'
DG
DG
22
22
0.063
0.010
1.593
1.656
N
1
B
B
C5'
C4'
DG
DG
22
22
0.049
0.007
1.512
1.561
N
1
B
B
O3'
C3'
DA
DA
29
29
-0.057
0.006
1.419
1.362
N
1
B
B
O3'
P
DA
DA
29
30
-0.077
0.012
1.607
1.530
Y
1
B
B
C6
N1
DA
DA
30
30
-0.048
0.007
1.351
1.303
N
1
B
B
C5
C7
DT
DT
31
31
0.042
0.006
1.496
1.538
N
1
B
B
C5'
C4'
DC
DC
38
38
0.055
0.007
1.512
1.567
N
1
C
PRO
299
-48.32
-72.05
1
C
HIS
300
-8.92
111.16
1
C
LYS
301
-16.55
-84.45
1
C
CYS
360
-86.33
-90.35
1
C
ASP
380
-59.04
91.66
1
C
TYR
383
-112.72
77.94
1
C
ASP
388
-53.71
108.00
LOCAL SCALING OF F(OBSERVED) AGAINST F(CALCULATED) WITH LSCALE (AUTHOR: M. ROULD) TO CORRECT FOR ANISOTROPIC DIFFRACTION AND ABSORPTION EFFECTS
0.3300000
0.2120000
0.2120000
2.500
6.000
9726
1
2.000
2.500
6.000
87
1809
4
814
904
0.016
2.07
1.500
2.000
2.000
2.500
1UBD
12347
3.000
0.0800000
1
5.000
93.600
refinement
X-PLOR
3.1
data reduction
DENZO
data scaling
SCALEPACK
CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENT
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
C
ASN
310
C
ASN
20
HELX_P
C
HIS
320
C
HIS
30
1
1
11
C
SER
337
C
SER
47
HELX_P
C
VAL
346
C
VAL
56
1
2
10
C
ASP
367
C
ASP
77
HELX_P
C
THR
378
C
THR
88
1
3
12
C
LYS
401
C
LYS
111
HELX_P
C
THR
406
C
THR
116
1
4
6
metalc
2.332
C
CYS
298
C
SG
CYS
8
1_555
C
ZN
501
D
ZN
ZN
1_555
metalc
2.322
C
CYS
303
C
SG
CYS
13
1_555
C
ZN
501
D
ZN
ZN
1_555
metalc
1.997
C
HIS
316
C
NE2
HIS
26
1_555
C
ZN
501
D
ZN
ZN
1_555
metalc
2.008
C
HIS
320
C
NE2
HIS
30
1_555
C
ZN
501
D
ZN
ZN
1_555
metalc
2.278
C
CYS
327
C
SG
CYS
37
1_555
C
ZN
502
E
ZN
ZN
1_555
metalc
2.307
C
CYS
330
C
SG
CYS
40
1_555
C
ZN
502
E
ZN
ZN
1_555
metalc
2.041
C
HIS
343
C
NE2
HIS
53
1_555
C
ZN
502
E
ZN
ZN
1_555
metalc
2.007
C
HIS
347
C
NE2
HIS
57
1_555
C
ZN
502
E
ZN
ZN
1_555
metalc
2.288
C
CYS
355
C
SG
CYS
65
1_555
C
ZN
503
F
ZN
ZN
1_555
metalc
2.286
C
CYS
360
C
SG
CYS
70
1_555
C
ZN
503
F
ZN
ZN
1_555
metalc
2.001
C
HIS
373
C
NE2
HIS
83
1_555
C
ZN
503
F
ZN
ZN
1_555
metalc
1.998
C
HIS
377
C
NE2
HIS
87
1_555
C
ZN
503
F
ZN
ZN
1_555
metalc
2.321
C
CYS
385
C
SG
CYS
95
1_555
C
ZN
504
G
ZN
ZN
1_555
metalc
2.361
C
CYS
390
C
SG
CYS
100
1_555
C
ZN
504
G
ZN
ZN
1_555
metalc
2.009
C
HIS
403
C
NE2
HIS
113
1_555
C
ZN
504
G
ZN
ZN
1_555
metalc
2.018
C
HIS
407
C
NE2
HIS
117
1_555
C
ZN
504
G
ZN
ZN
1_555
hydrog
WATSON-CRICK
A
DA
1
A
N1
DA
1
1_555
B
DT
40
B
N3
DT
20
1_555
hydrog
WATSON-CRICK
A
DA
1
A
N6
DA
1
1_555
B
DT
40
B
O4
DT
20
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
39
B
N3
DC
19
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
39
B
O2
DC
19
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
39
B
N4
DC
19
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
38
B
N3
DC
18
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
38
B
O2
DC
18
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
38
B
N4
DC
18
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
37
B
N3
DC
17
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
37
B
O2
DC
17
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
37
B
N4
DC
17
1_555
hydrog
WATSON-CRICK
A
DT
5
A
N3
DT
5
1_555
B
DA
36
B
N1
DA
16
1_555
hydrog
WATSON-CRICK
A
DT
5
A
O4
DT
5
1_555
B
DA
36
B
N6
DA
16
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
35
B
N1
DG
15
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
35
B
O6
DG
15
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
35
B
N2
DG
15
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
34
B
N1
DA
14
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
34
B
N6
DA
14
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
33
B
N1
DG
13
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
33
B
O6
DG
13
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
33
B
N2
DG
13
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
32
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
32
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
32
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N1
DA
10
1_555
B
DT
31
B
N3
DT
11
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N6
DA
10
1_555
B
DT
31
B
O4
DT
11
1_555
hydrog
WATSON-CRICK
A
DT
11
A
N3
DT
11
1_555
B
DA
30
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
A
DT
11
A
O4
DT
11
1_555
B
DA
30
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
A
DT
12
A
N3
DT
12
1_555
B
DA
29
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
A
DT
12
A
O4
DT
12
1_555
B
DA
29
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
A
DT
13
A
N3
DT
13
1_555
B
DA
28
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
13
A
O4
DT
13
1_555
B
DA
28
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
14
A
N3
DT
14
1_555
B
DA
27
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
A
DT
14
A
O4
DT
14
1_555
B
DA
27
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
A
DG
15
A
N1
DG
15
1_555
B
DC
26
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
15
A
N2
DG
15
1_555
B
DC
26
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
15
A
O6
DG
15
1_555
B
DC
26
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DA
16
A
N1
DA
16
1_555
B
DT
25
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
16
A
N6
DA
16
1_555
B
DT
25
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
17
A
N1
DA
17
1_555
B
DT
24
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
A
DA
17
A
N6
DA
17
1_555
B
DT
24
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
A
DG
18
A
N1
DG
18
1_555
B
DC
23
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
18
A
N2
DG
18
1_555
B
DC
23
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
18
A
O6
DG
18
1_555
B
DC
23
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
19
A
N3
DC
19
1_555
B
DG
22
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
19
A
N4
DC
19
1_555
B
DG
22
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
19
A
O2
DC
19
1_555
B
DG
22
B
N2
DG
2
1_555
hydrog
DG-DC PAIR
A
DG
20
A
N1
DG
20
1_555
B
DC
21
B
N3
DC
1
1_555
TRANSCRIPTION/DNA
TRANSCRIPTION INITIATION, INITIATOR ELEMENT, YY1, ZINC FINGER PROTEIN, DNA- PROTEIN RECOGNITION, COMPLEX (TRANSCRIPTION REGULATION-DNA), TRANSCRIPTION-DNA COMPLEX
TYY1_HUMAN
UNP
3
293
P25490
1UBD
PDB
1
1UBD
1UBD
PDB
2
1UBD
293
414
1UBD
291
414
P25490
C
1
1
124
1
20
1UBD
1
20
1UBD
A
2
1
20
21
40
1UBD
21
40
1UBD
B
3
1
20
1
ASP
engineered mutation
MET
291
1UBD
C
P25490
UNP
291
1
1
ALA
engineered mutation
GLU
292
1UBD
C
P25490
UNP
292
2
2
2
2
anti-parallel
anti-parallel
anti-parallel
C
ILE
296
C
ILE
6
C
ALA
297
C
ALA
7
C
MET
306
C
MET
16
C
PHE
307
C
PHE
17
C
HIS
325
C
HIS
35
C
VAL
326
C
VAL
36
C
ALA
333
C
ALA
43
C
PHE
334
C
PHE
44
C
PHE
353
C
PHE
63
C
GLN
354
C
GLN
64
C
ARG
363
C
ARG
73
C
PHE
364
C
PHE
74
BINDING SITE FOR RESIDUE ZN C 501
C
ZN
501
Software
4
BINDING SITE FOR RESIDUE ZN C 502
C
ZN
502
Software
4
BINDING SITE FOR RESIDUE ZN C 503
C
ZN
503
Software
4
BINDING SITE FOR RESIDUE ZN C 504
C
ZN
504
Software
4
C
CYS
298
C
CYS
8
4
1_555
C
CYS
303
C
CYS
13
4
1_555
C
HIS
316
C
HIS
26
4
1_555
C
HIS
320
C
HIS
30
4
1_555
C
CYS
327
C
CYS
37
4
1_555
C
CYS
330
C
CYS
40
4
1_555
C
HIS
343
C
HIS
53
4
1_555
C
HIS
347
C
HIS
57
4
1_555
C
CYS
355
C
CYS
65
4
1_555
C
CYS
360
C
CYS
70
4
1_555
C
HIS
373
C
HIS
83
4
1_555
C
HIS
377
C
HIS
87
4
1_555
C
CYS
385
C
CYS
95
4
1_555
C
CYS
390
C
CYS
100
4
1_555
C
HIS
403
C
HIS
113
4
1_555
C
HIS
407
C
HIS
117
4
1_555
19
P 21 21 21