0.012621 0.000000 0.000000 0.000000 0.012621 0.000000 0.000000 0.000000 0.026371 0.00000 0.00000 0.00000 Motoshima, H. Ohmura, T. Ueda, T. Imoto, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 79.230 79.230 37.920 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking JA J.Biochem.(Tokyo) JOBIAO 0418 0021-924X 131 701 704 11983077 Fluctuations in free or substrate-complexed lysozyme and a mutant of it detected on x-ray crystallography and comparison with those detected on NMR. 2002 10.2210/pdb1uib/pdb pdb_00001uib 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295 1 CU KA IMAGE PLATE 1995-12-09 RIGAKU RAXIS IIC MIRROR-MIRROR M x-ray 1 1.5418 1.0 1.5418 14035.819 LYSOZYME 3.2.1.17 DEL(14,15) 1 man polymer 627.594 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 18.015 water 86 nat water triacetyl-beta-chitotriose no no KVFGRCELAAAMKGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSA LLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL KVFGRCELAAAMKGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSA LLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n chicken Gallus baker's yeast Saccharomyces sample HEN LYSOZYME 9031 Gallus gallus HEN LYSOZYME 4932 Saccharomyces cerevisiae SACCHAROMYCES CEREVISIAE PAM82 YEP 1 2.12 41.97 4.7 50 MM ACETATE AT PH 4.7 CONTAINING 0.9 M NACL atom_site chem_comp entity entity_name_com pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_molecule_features pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_site struct_site_gen chem_comp database_2 struct_ref_seq_dif pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Atomic model Data collection Derived calculations Other Structure summary Database references Structure summary Refinement description 1 0 1997-11-26 1 1 2008-03-24 1 2 2011-07-13 2 0 2020-07-29 2 1 2022-12-21 2 2 2023-08-09 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.type _pdbx_database_status.process_site _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details NAG 503 n B NAG 1 NAG 502 n B NAG 2 NAG 501 n B NAG 3 DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Y BNL 1996-11-26 REL REL oligosaccharide DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,3,2/[a2122h-1b_1-5_2*NCC/3=O]/1-1-1/a4-b1_b4-c1 2 PDB2Glycan 1.1.0 WURCS [][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}} 2 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing C1 O4 NAG NAG 3 2 2 O1 HO4 sing n n n HOH water 1RFP PDB ENTRY 1RFP PDB experimental model Inhibitor oligosaccharide triacetyl-beta-chitotriose Oligosaccharide HOH 131 3 HOH HOH 131 A HOH 132 3 HOH HOH 132 A HOH 133 3 HOH HOH 133 A HOH 134 3 HOH HOH 134 A HOH 135 3 HOH HOH 135 A HOH 136 3 HOH HOH 136 A HOH 137 3 HOH HOH 137 A HOH 138 3 HOH HOH 138 A HOH 139 3 HOH HOH 139 A HOH 140 3 HOH HOH 140 A HOH 141 3 HOH HOH 141 A HOH 142 3 HOH HOH 142 A HOH 143 3 HOH HOH 143 A HOH 144 3 HOH HOH 144 A HOH 145 3 HOH HOH 145 A HOH 146 3 HOH HOH 146 A HOH 147 3 HOH HOH 147 A HOH 148 3 HOH HOH 148 A HOH 149 3 HOH HOH 149 A HOH 150 3 HOH HOH 150 A HOH 151 3 HOH HOH 151 A HOH 152 3 HOH HOH 152 A HOH 153 3 HOH HOH 153 A HOH 154 3 HOH HOH 154 A HOH 155 3 HOH HOH 155 A HOH 156 3 HOH HOH 156 A HOH 157 3 HOH HOH 157 A HOH 158 3 HOH HOH 158 A HOH 159 3 HOH HOH 159 A HOH 160 3 HOH HOH 160 A HOH 161 3 HOH HOH 161 A HOH 162 3 HOH HOH 162 A HOH 163 3 HOH HOH 163 A HOH 164 3 HOH HOH 164 A HOH 165 3 HOH HOH 165 A HOH 166 3 HOH HOH 166 A HOH 167 3 HOH HOH 167 A HOH 168 3 HOH HOH 168 A HOH 169 3 HOH HOH 169 A HOH 170 3 HOH HOH 170 A HOH 171 3 HOH HOH 171 A HOH 172 3 HOH HOH 172 A HOH 173 3 HOH HOH 173 A HOH 174 3 HOH HOH 174 A HOH 175 3 HOH HOH 175 A HOH 176 3 HOH HOH 176 A HOH 177 3 HOH HOH 177 A HOH 178 3 HOH HOH 178 A HOH 179 3 HOH HOH 179 A HOH 180 3 HOH HOH 180 A HOH 181 3 HOH HOH 181 A HOH 182 3 HOH HOH 182 A HOH 183 3 HOH HOH 183 A HOH 184 3 HOH HOH 184 A HOH 185 3 HOH HOH 185 A HOH 186 3 HOH HOH 186 A HOH 187 3 HOH HOH 187 A HOH 188 3 HOH HOH 188 A HOH 189 3 HOH HOH 189 A HOH 190 3 HOH HOH 190 A HOH 191 3 HOH HOH 191 A HOH 192 3 HOH HOH 192 A HOH 193 3 HOH HOH 193 A HOH 194 3 HOH HOH 194 A HOH 195 3 HOH HOH 195 A HOH 196 3 HOH HOH 196 A HOH 197 3 HOH HOH 197 A HOH 198 3 HOH HOH 198 A HOH 199 3 HOH HOH 199 A HOH 200 3 HOH HOH 200 A HOH 201 3 HOH HOH 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A LYS 1 n 1 LYS 1 A VAL 2 n 2 VAL 2 A PHE 3 n 3 PHE 3 A GLY 4 n 4 GLY 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A GLU 7 n 7 GLU 7 A LEU 8 n 8 LEU 8 A ALA 9 n 9 ALA 9 A ALA 10 n 10 ALA 10 A ALA 11 n 11 ALA 11 A MET 12 n 12 MET 12 A LYS 13 n 13 LYS 13 A GLY 16 n 14 GLY 16 A LEU 17 n 15 LEU 17 A ASP 18 n 16 ASP 18 A ASN 19 n 17 ASN 19 A TYR 20 n 18 TYR 20 A ARG 21 n 19 ARG 21 A GLY 22 n 20 GLY 22 A TYR 23 n 21 TYR 23 A SER 24 n 22 SER 24 A LEU 25 n 23 LEU 25 A GLY 26 n 24 GLY 26 A ASN 27 n 25 ASN 27 A TRP 28 n 26 TRP 28 A VAL 29 n 27 VAL 29 A CYS 30 n 28 CYS 30 A ALA 31 n 29 ALA 31 A ALA 32 n 30 ALA 32 A LYS 33 n 31 LYS 33 A PHE 34 n 32 PHE 34 A GLU 35 n 33 GLU 35 A SER 36 n 34 SER 36 A ASN 37 n 35 ASN 37 A PHE 38 n 36 PHE 38 A ASN 39 n 37 ASN 39 A THR 40 n 38 THR 40 A GLN 41 n 39 GLN 41 A ALA 42 n 40 ALA 42 A THR 43 n 41 THR 43 A ASN 44 n 42 ASN 44 A ARG 45 n 43 ARG 45 A ASN 46 n 44 ASN 46 A THR 47 n 45 THR 47 A ASP 48 n 46 ASP 48 A GLY 49 n 47 GLY 49 A SER 50 n 48 SER 50 A THR 51 n 49 THR 51 A ASP 52 n 50 ASP 52 A TYR 53 n 51 TYR 53 A GLY 54 n 52 GLY 54 A ILE 55 n 53 ILE 55 A LEU 56 n 54 LEU 56 A GLN 57 n 55 GLN 57 A ILE 58 n 56 ILE 58 A ASN 59 n 57 ASN 59 A SER 60 n 58 SER 60 A ARG 61 n 59 ARG 61 A TRP 62 n 60 TRP 62 A TRP 63 n 61 TRP 63 A CYS 64 n 62 CYS 64 A ASN 65 n 63 ASN 65 A ASP 66 n 64 ASP 66 A GLY 67 n 65 GLY 67 A ARG 68 n 66 ARG 68 A THR 69 n 67 THR 69 A PRO 70 n 68 PRO 70 A GLY 71 n 69 GLY 71 A SER 72 n 70 SER 72 A ARG 73 n 71 ARG 73 A ASN 74 n 72 ASN 74 A LEU 75 n 73 LEU 75 A CYS 76 n 74 CYS 76 A ASN 77 n 75 ASN 77 A ILE 78 n 76 ILE 78 A PRO 79 n 77 PRO 79 A CYS 80 n 78 CYS 80 A SER 81 n 79 SER 81 A ALA 82 n 80 ALA 82 A LEU 83 n 81 LEU 83 A LEU 84 n 82 LEU 84 A SER 85 n 83 SER 85 A SER 86 n 84 SER 86 A ASP 87 n 85 ASP 87 A ILE 88 n 86 ILE 88 A THR 89 n 87 THR 89 A ALA 90 n 88 ALA 90 A SER 91 n 89 SER 91 A VAL 92 n 90 VAL 92 A ASN 93 n 91 ASN 93 A CYS 94 n 92 CYS 94 A ALA 95 n 93 ALA 95 A LYS 96 n 94 LYS 96 A LYS 97 n 95 LYS 97 A ILE 98 n 96 ILE 98 A VAL 99 n 97 VAL 99 A SER 100 n 98 SER 100 A ASP 101 n 99 ASP 101 A GLY 102 n 100 GLY 102 A ASN 103 n 101 ASN 103 A GLY 104 n 102 GLY 104 A MET 105 n 103 MET 105 A ASN 106 n 104 ASN 106 A ALA 107 n 105 ALA 107 A TRP 108 n 106 TRP 108 A VAL 109 n 107 VAL 109 A ALA 110 n 108 ALA 110 A TRP 111 n 109 TRP 111 A ARG 112 n 110 ARG 112 A ASN 113 n 111 ASN 113 A ARG 114 n 112 ARG 114 A CYS 115 n 113 CYS 115 A LYS 116 n 114 LYS 116 A GLY 117 n 115 GLY 117 A THR 118 n 116 THR 118 A ASP 119 n 117 ASP 119 A VAL 120 n 118 VAL 120 A GLN 121 n 119 GLN 121 A ALA 122 n 120 ALA 122 A TRP 123 n 121 TRP 123 A ILE 124 n 122 ILE 124 A ARG 125 n 123 ARG 125 A GLY 126 n 124 GLY 126 A CYS 127 n 125 CYS 127 A ARG 128 n 126 ARG 128 A LEU 129 n 127 LEU 129 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASN 44 A O ASN 42 A N ASP 52 A N ASP 50 1 A ARG 68 -143.67 19.64 PARHCSDX.PRO TOPHCSDX.PRO 0.166 0.166 1.76 6.0 11387 91.0 1. 1 1. PDB ENTRY 1RFP 1.76 6.0 86 1109 43 0 980 0.010 1.546 23.33 1.317 1.76 100. 1UIB 11765 1. 0.0443 1 94.0 0.222 1.76 1.80 1 81.9 data collection PROCESS data reduction PROCESS (SCALE) model building X-PLOR 3.1 refinement X-PLOR 3.1 data scaling PROCESS (SCALE) phasing X-PLOR 3.1 ANALYSIS OF THE STABILIZATION OF HEN LYSOZYME WITH THE HELIX DIPOLE AND CHARGED SIDE CHAINS 1 N N 2 N N 3 N N A ARG 5 A ARG 5 HELX_P A ALA 11 A ALA 11 1 1 7 A LYS 13 A LYS 13 HELX_P A LEU 17 A LEU 15 5 2 3 A TYR 20 A TYR 18 HELX_P A GLY 22 A GLY 20 5 3 3 A LEU 25 A LEU 23 HELX_P A SER 36 A SER 34 1 4 12 A CYS 80 A CYS 78 HELX_P A LEU 84 A LEU 82 5 5 5 A THR 89 A THR 87 HELX_P A SER 100 A SER 98 1 6 12 A GLY 104 A GLY 102 HELX_P A ALA 107 A ALA 105 5 7 4 A VAL 109 A VAL 107 HELX_P A ARG 114 A ARG 112 1 8 6 A VAL 120 A VAL 118 HELX_P A ILE 124 A ILE 122 5 9 5 disulf 2.025 A CYS 6 A SG CYS 6 1_555 A CYS 127 A SG CYS 125 1_555 disulf 2.021 A CYS 30 A SG CYS 28 1_555 A CYS 115 A SG CYS 113 1_555 disulf 2.024 A CYS 64 A SG CYS 62 1_555 A CYS 80 A SG CYS 78 1_555 disulf 2.027 A CYS 76 A SG CYS 74 1_555 A CYS 94 A SG CYS 92 1_555 covale 1.394 both B NAG 1 B O4 NAG 1_555 B NAG 2 B C1 NAG 1_555 covale 1.401 both B NAG 2 B O4 NAG 1_555 B NAG 3 B C1 NAG 1_555 HYDROLASE HYDROLASE, GLYCOSIDASE, ELECTROSTATIC INTERACTION, HELIX, HEN LYSOZYME, STABILITY LYC_CHICK UNP 1 1 P00698 MRSLLILVLCFLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRW WCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL 19 147 1UIB 1 129 P00698 A 1 1 127 1 ARG deletion 1UIB A P00698 UNP 32 1 HIS deletion 1UIB A P00698 UNP 33 2 anti-parallel A THR 43 A THR 41 A ARG 45 A ARG 43 A THR 51 A THR 49 A TYR 53 A TYR 51 96 P 43 21 2