0.008709
0.000000
0.000000
0.000000
0.008709
0.000000
0.000000
0.000000
0.018644
0.00000
0.00000
0.00000
Shiba, T.
Kametaka, S.
Kawasaki, M.
Shibata, M.
Waguri, S.
Uchiyama, Y.
Wakatsuki, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
114.827
114.827
53.636
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
DK
TRAFFIC
1398-9219
5
437
448
10.1111/j.1600-0854.2004.00188.x
15117318
Insights into the Phosphoregulation of beta-Secretase Sorting Signal by the VHS Domain of GGA1
2004
10.2210/pdb1ujj/pdb
pdb_00001ujj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2003-06-14
ADSC QUANTUM 210
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
AR-NW12A
Photon Factory
1.0
SYNCHROTRON
PHOTON FACTORY BEAMLINE AR-NW12A
16814.436
ADP-ribosylation factor binding protein GGA1
VHS domain, N-terminal domain
2
man
polymer
1390.496
C-terminal peptide from Beta-secretase
3.4.23.-
1
syn
polymer
GGA1
C-terminal peptide from BACE
no
no
MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR
FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKS
MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR
FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKS
A,B
polypeptide(L)
no
no
HDDFADDISLLK
HDDFADDISLLK
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
9606
Homo sapiens
511693
Escherichia coli BL21
BL21
PLASMID
pGEX4T-2
1
2.74
54.69
VAPOR DIFFUSION, HANGING DROP
8.6
PEG 5000MME, di-Ammonium hydrogen phosphate, Tris-HCl, pH 8.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2004-05-11
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-10-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
The same protein without peptide.
The same protein complexed with CI-MPR peptide.
The same protein complexed with phosphorylated peptide.
PDBJ
Y
PDBJ
2003-08-05
REL
REL
Synthesized peptide
sample
1JWG
PDB ENTRY 1JWG
PDB
experimental model
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
PRO
7
n
7
PRO
7
A
GLU
8
n
8
GLU
8
A
THR
9
n
9
THR
9
A
LEU
10
n
10
LEU
10
A
GLU
11
n
11
GLU
11
A
ALA
12
n
12
ALA
12
A
ARG
13
n
13
ARG
13
A
ILE
14
n
14
ILE
14
A
ASN
15
n
15
ASN
15
A
ARG
16
n
16
ARG
16
A
ALA
17
n
17
ALA
17
A
THR
18
n
18
THR
18
A
ASN
19
n
19
ASN
19
A
PRO
20
n
20
PRO
20
A
LEU
21
n
21
LEU
21
A
ASN
22
n
22
ASN
22
A
LYS
23
n
23
LYS
23
A
GLU
24
n
24
GLU
24
A
LEU
25
n
25
LEU
25
A
ASP
26
n
26
ASP
26
A
TRP
27
n
27
TRP
27
A
ALA
28
n
28
ALA
28
A
SER
29
n
29
SER
29
A
ILE
30
n
30
ILE
30
A
ASN
31
n
31
ASN
31
A
GLY
32
n
32
GLY
32
A
PHE
33
n
33
PHE
33
A
CYS
34
n
34
CYS
34
A
GLU
35
n
35
GLU
35
A
GLN
36
n
36
GLN
36
A
LEU
37
n
37
LEU
37
A
ASN
38
n
38
ASN
38
A
GLU
39
n
39
GLU
39
A
ASP
40
n
40
ASP
40
A
PHE
41
n
41
PHE
41
A
GLU
42
n
42
GLU
42
A
GLY
43
n
43
GLY
43
A
PRO
44
n
44
PRO
44
A
PRO
45
n
45
PRO
45
A
LEU
46
n
46
LEU
46
A
ALA
47
n
47
ALA
47
A
THR
48
n
48
THR
48
A
ARG
49
n
49
ARG
49
A
LEU
50
n
50
LEU
50
A
LEU
51
n
51
LEU
51
A
ALA
52
n
52
ALA
52
A
HIS
53
n
53
HIS
53
A
LYS
54
n
54
LYS
54
A
ILE
55
n
55
ILE
55
A
GLN
56
n
56
GLN
56
A
SER
57
n
57
SER
57
A
PRO
58
n
58
PRO
58
A
GLN
59
n
59
GLN
59
A
GLU
60
n
60
GLU
60
A
TRP
61
n
61
TRP
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
ILE
64
n
64
ILE
64
A
GLN
65
n
65
GLN
65
A
ALA
66
n
66
ALA
66
A
LEU
67
n
67
LEU
67
A
THR
68
n
68
THR
68
A
VAL
69
n
69
VAL
69
A
LEU
70
n
70
LEU
70
A
GLU
71
n
71
GLU
71
A
THR
72
n
72
THR
72
A
CYS
73
n
73
CYS
73
A
MET
74
n
74
MET
74
A
LYS
75
n
75
LYS
75
A
SER
76
n
76
SER
76
A
CYS
77
n
77
CYS
77
A
GLY
78
n
78
GLY
78
A
LYS
79
n
79
LYS
79
A
ARG
80
n
80
ARG
80
A
PHE
81
n
81
PHE
81
A
HIS
82
n
82
HIS
82
A
ASP
83
n
83
ASP
83
A
GLU
84
n
84
GLU
84
A
VAL
85
n
85
VAL
85
A
GLY
86
n
86
GLY
86
A
LYS
87
n
87
LYS
87
A
PHE
88
n
88
PHE
88
A
ARG
89
n
89
ARG
89
A
PHE
90
n
90
PHE
90
A
LEU
91
n
91
LEU
91
A
ASN
92
n
92
ASN
92
A
GLU
93
n
93
GLU
93
A
LEU
94
n
94
LEU
94
A
ILE
95
n
95
ILE
95
A
LYS
96
n
96
LYS
96
A
VAL
97
n
97
VAL
97
A
VAL
98
n
98
VAL
98
A
SER
99
n
99
SER
99
A
PRO
100
n
100
PRO
100
A
LYS
101
n
101
LYS
101
A
TYR
102
n
102
TYR
102
A
LEU
103
n
103
LEU
103
A
GLY
104
n
104
GLY
104
A
SER
105
n
105
SER
105
A
ARG
106
n
106
ARG
106
A
THR
107
n
107
THR
107
A
SER
108
n
108
SER
108
A
GLU
109
n
109
GLU
109
A
LYS
110
n
110
LYS
110
A
VAL
111
n
111
VAL
111
A
LYS
112
n
112
LYS
112
A
ASN
113
n
113
ASN
113
A
LYS
114
n
114
LYS
114
A
ILE
115
n
115
ILE
115
A
LEU
116
n
116
LEU
116
A
GLU
117
n
117
GLU
117
A
LEU
118
n
118
LEU
118
A
LEU
119
n
119
LEU
119
A
TYR
120
n
120
TYR
120
A
SER
121
n
121
SER
121
A
TRP
122
n
122
TRP
122
A
THR
123
n
123
THR
123
A
VAL
124
n
124
VAL
124
A
GLY
125
n
125
GLY
125
A
LEU
126
n
126
LEU
126
A
PRO
127
n
127
PRO
127
A
GLU
128
n
128
GLU
128
A
GLU
129
n
129
GLU
129
A
VAL
130
n
130
VAL
130
A
LYS
131
n
131
LYS
131
A
ILE
132
n
132
ILE
132
A
ALA
133
n
133
ALA
133
A
GLU
134
n
134
GLU
134
A
ALA
135
n
135
ALA
135
A
TYR
136
n
136
TYR
136
A
GLN
137
n
137
GLN
137
A
MET
138
n
138
MET
138
A
LEU
139
n
139
LEU
139
A
LYS
140
n
140
LYS
140
A
LYS
141
n
141
LYS
141
A
GLN
142
n
142
GLN
142
A
GLY
143
n
143
GLY
143
A
ILE
144
n
144
ILE
144
A
VAL
145
n
145
VAL
145
A
LYS
146
n
146
LYS
146
A
n
147
147
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
PRO
7
n
7
PRO
7
B
GLU
8
n
8
GLU
8
B
THR
9
n
9
THR
9
B
LEU
10
n
10
LEU
10
B
GLU
11
n
11
GLU
11
B
ALA
12
n
12
ALA
12
B
ARG
13
n
13
ARG
13
B
ILE
14
n
14
ILE
14
B
ASN
15
n
15
ASN
15
B
ARG
16
n
16
ARG
16
B
ALA
17
n
17
ALA
17
B
THR
18
n
18
THR
18
B
ASN
19
n
19
ASN
19
B
PRO
20
n
20
PRO
20
B
LEU
21
n
21
LEU
21
B
ASN
22
n
22
ASN
22
B
LYS
23
n
23
LYS
23
B
GLU
24
n
24
GLU
24
B
LEU
25
n
25
LEU
25
B
ASP
26
n
26
ASP
26
B
TRP
27
n
27
TRP
27
B
ALA
28
n
28
ALA
28
B
SER
29
n
29
SER
29
B
ILE
30
n
30
ILE
30
B
ASN
31
n
31
ASN
31
B
GLY
32
n
32
GLY
32
B
PHE
33
n
33
PHE
33
B
CYS
34
n
34
CYS
34
B
GLU
35
n
35
GLU
35
B
GLN
36
n
36
GLN
36
B
LEU
37
n
37
LEU
37
B
ASN
38
n
38
ASN
38
B
GLU
39
n
39
GLU
39
B
ASP
40
n
40
ASP
40
B
PHE
41
n
41
PHE
41
B
GLU
42
n
42
GLU
42
B
GLY
43
n
43
GLY
43
B
PRO
44
n
44
PRO
44
B
PRO
45
n
45
PRO
45
B
LEU
46
n
46
LEU
46
B
ALA
47
n
47
ALA
47
B
THR
48
n
48
THR
48
B
ARG
49
n
49
ARG
49
B
LEU
50
n
50
LEU
50
B
LEU
51
n
51
LEU
51
B
ALA
52
n
52
ALA
52
B
HIS
53
n
53
HIS
53
B
LYS
54
n
54
LYS
54
B
ILE
55
n
55
ILE
55
B
GLN
56
n
56
GLN
56
B
SER
57
n
57
SER
57
B
PRO
58
n
58
PRO
58
B
GLN
59
n
59
GLN
59
B
GLU
60
n
60
GLU
60
B
TRP
61
n
61
TRP
61
B
GLU
62
n
62
GLU
62
B
ALA
63
n
63
ALA
63
B
ILE
64
n
64
ILE
64
B
GLN
65
n
65
GLN
65
B
ALA
66
n
66
ALA
66
B
LEU
67
n
67
LEU
67
B
THR
68
n
68
THR
68
B
VAL
69
n
69
VAL
69
B
LEU
70
n
70
LEU
70
B
GLU
71
n
71
GLU
71
B
THR
72
n
72
THR
72
B
CYS
73
n
73
CYS
73
B
MET
74
n
74
MET
74
B
LYS
75
n
75
LYS
75
B
SER
76
n
76
SER
76
B
CYS
77
n
77
CYS
77
B
GLY
78
n
78
GLY
78
B
LYS
79
n
79
LYS
79
B
ARG
80
n
80
ARG
80
B
PHE
81
n
81
PHE
81
B
HIS
82
n
82
HIS
82
B
ASP
83
n
83
ASP
83
B
GLU
84
n
84
GLU
84
B
VAL
85
n
85
VAL
85
B
GLY
86
n
86
GLY
86
B
LYS
87
n
87
LYS
87
B
PHE
88
n
88
PHE
88
B
ARG
89
n
89
ARG
89
B
PHE
90
n
90
PHE
90
B
LEU
91
n
91
LEU
91
B
ASN
92
n
92
ASN
92
B
GLU
93
n
93
GLU
93
B
LEU
94
n
94
LEU
94
B
ILE
95
n
95
ILE
95
B
LYS
96
n
96
LYS
96
B
VAL
97
n
97
VAL
97
B
VAL
98
n
98
VAL
98
B
SER
99
n
99
SER
99
B
PRO
100
n
100
PRO
100
B
LYS
101
n
101
LYS
101
B
TYR
102
n
102
TYR
102
B
LEU
103
n
103
LEU
103
B
GLY
104
n
104
GLY
104
B
SER
105
n
105
SER
105
B
ARG
106
n
106
ARG
106
B
THR
107
n
107
THR
107
B
SER
108
n
108
SER
108
B
GLU
109
n
109
GLU
109
B
LYS
110
n
110
LYS
110
B
VAL
111
n
111
VAL
111
B
LYS
112
n
112
LYS
112
B
ASN
113
n
113
ASN
113
B
LYS
114
n
114
LYS
114
B
ILE
115
n
115
ILE
115
B
LEU
116
n
116
LEU
116
B
GLU
117
n
117
GLU
117
B
LEU
118
n
118
LEU
118
B
LEU
119
n
119
LEU
119
B
TYR
120
n
120
TYR
120
B
SER
121
n
121
SER
121
B
TRP
122
n
122
TRP
122
B
THR
123
n
123
THR
123
B
VAL
124
n
124
VAL
124
B
GLY
125
n
125
GLY
125
B
LEU
126
n
126
LEU
126
B
PRO
127
n
127
PRO
127
B
GLU
128
n
128
GLU
128
B
GLU
129
n
129
GLU
129
B
VAL
130
n
130
VAL
130
B
LYS
131
n
131
LYS
131
B
ILE
132
n
132
ILE
132
B
ALA
133
n
133
ALA
133
B
GLU
134
n
134
GLU
134
B
ALA
135
n
135
ALA
135
B
TYR
136
n
136
TYR
136
B
GLN
137
n
137
GLN
137
B
MET
138
n
138
MET
138
B
LEU
139
n
139
LEU
139
B
LYS
140
n
140
LYS
140
B
LYS
141
n
141
LYS
141
B
GLN
142
n
142
GLN
142
B
GLY
143
n
143
GLY
143
B
ILE
144
n
144
ILE
144
B
VAL
145
n
145
VAL
145
B
LYS
146
n
146
LYS
146
B
n
147
147
B
n
1
1
C
n
2
2
C
n
3
3
C
n
4
4
C
n
5
5
C
ASP
6
n
6
ASP
6
C
ASP
7
n
7
ASP
7
C
ILE
8
n
8
ILE
8
C
SER
9
n
9
SER
9
C
LEU
10
n
10
LEU
10
C
LEU
11
n
11
LEU
11
C
LYS
12
n
12
LYS
12
C
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
1
monomeric
900
-3
7820
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
MET
1
A
MET
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
PRO
3
A
PRO
3
1
Y
1
A
ALA
4
A
ALA
4
1
Y
1
A
MET
5
A
MET
5
1
Y
1
A
GLU
6
A
GLU
6
1
Y
1
A
SER
147
A
SER
147
1
Y
1
B
MET
1
B
MET
1
1
Y
1
B
GLU
2
B
GLU
2
1
Y
1
B
PRO
3
B
PRO
3
1
Y
1
B
ALA
4
B
ALA
4
1
Y
1
B
MET
5
B
MET
5
1
Y
1
B
GLU
6
B
GLU
6
1
Y
1
B
SER
147
B
SER
147
1
Y
1
C
HIS
1
C
HIS
1
1
Y
1
C
ASP
2
C
ASP
2
1
Y
1
C
ASP
3
C
ASP
3
1
Y
1
C
PHE
4
C
PHE
4
1
Y
1
C
ALA
5
C
ALA
5
1
Y
1
A
ALA
28
-61.32
-71.88
1
A
CYS
77
-66.50
25.68
1
A
TYR
102
-130.94
-110.69
1
A
VAL
124
-92.71
-66.25
1
B
GLU
39
-119.30
56.87
1
B
ASP
40
-175.03
134.48
1
B
CYS
77
-65.82
21.80
1
B
LYS
79
-100.83
-64.36
1
B
TYR
102
-99.23
-113.51
1
B
GLU
128
-72.88
23.23
0.2954
0.2442
0.24676
0.24676
2.6
40
547
10872
10857
99.4
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
PDB ENTRY 1JWG
Engh & Huber
2.6
40
0
2308
0
0
2308
0.008614
1.06991
2.6
40
1UJJ
10872
10857
0.059
1
20.7
99.4
2.6
2.69
99.7
data collection
HKL-2000
data scaling
SCALA
phasing
MOLREP
refinement
CNS
data reduction
HKL-2000
data scaling
CCP4
(SCALA)
VHS domain of human GGA1 complexed with C-terminal peptide from BACE
1
N
N
1
N
N
2
N
N
A
THR
9
A
THR
9
HELX_P
A
THR
18
A
THR
18
1
1
10
A
ASP
26
A
ASP
26
HELX_P
A
ASN
38
A
ASN
38
1
2
13
A
GLU
42
A
GLU
42
HELX_P
A
GLN
56
A
GLN
56
1
3
15
A
GLN
59
A
GLN
59
HELX_P
A
SER
76
A
SER
76
1
4
18
A
GLY
78
A
GLY
78
HELX_P
A
LYS
87
A
LYS
87
1
5
10
A
LYS
87
A
LYS
87
HELX_P
A
SER
99
A
SER
99
1
6
13
A
SER
108
A
SER
108
HELX_P
A
LEU
126
A
LEU
126
1
7
19
A
GLU
129
A
GLU
129
HELX_P
A
GLN
142
A
GLN
142
1
8
14
B
THR
9
B
THR
9
HELX_P
B
THR
18
B
THR
18
1
9
10
B
ASP
26
B
ASP
26
HELX_P
B
GLU
39
B
GLU
39
1
10
14
B
GLU
42
B
GLU
42
HELX_P
B
GLN
56
B
GLN
56
1
11
15
B
GLN
59
B
GLN
59
HELX_P
B
SER
76
B
SER
76
1
12
18
B
LYS
79
B
LYS
79
HELX_P
B
LYS
87
B
LYS
87
1
13
9
B
LYS
87
B
LYS
87
HELX_P
B
SER
99
B
SER
99
1
14
13
B
TYR
102
B
TYR
102
HELX_P
B
ARG
106
B
ARG
106
5
15
5
B
SER
108
B
SER
108
HELX_P
B
LEU
126
B
LEU
126
1
16
19
B
GLU
129
B
GLU
129
HELX_P
B
GLN
142
B
GLN
142
1
17
14
disulf
2.037
A
CYS
34
A
SG
CYS
34
1_555
A
CYS
73
A
SG
CYS
73
1_555
disulf
2.030
B
CYS
34
B
SG
CYS
34
1_555
B
CYS
73
B
SG
CYS
73
1_555
PROTEIN TRANSPORT/Hydrolase
PROTEIN-PEPTIDE COMPLEX, PROTEIN TRANSPORT, ADAPTOR PROTEIN, PROTEIN TRANSPORT-Hydrolase COMPLEX
GGA1_HUMAN
UNP
1
1
Q9UJY5
BACE1_HUMAN
UNP
2
490
P56817
1
147
1UJJ
1
147
Q9UJY5
A
1
1
147
1
147
1UJJ
1
147
Q9UJY5
B
1
1
147
490
501
1UJJ
1
12
P56817
C
2
1
12
79
I 4