0.021294
0.000000
0.000000
0.000000
0.015755
0.000000
0.000000
0.000000
0.007270
0.000000
0.000000
0.000000
Beuscher IV, A.E.
Reuter, J.
Olson, A.J.
Romesberg, F.E.
Schultz, P.G.
Wirsching, P.
Janda, K.D.
Lerner, R.A.
Stevens, R.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
46.962
63.470
137.549
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C17 H19 N O4 P -1
332.311
(1R)-1-PHENYLETHYL 4-(ACETYLAMINO)BENZYLPHOSPHONATE
(1S)-1PHENYLETHYL [4-(ACETYLAMINO) BENZYL] PHOSPHATE
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
O
N
305
N
P
N
306
N
O
N
307
N
O
N
308
S
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
N
315
N
C
N
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
N
N
322
N
C
N
323
N
O
N
324
N
C
Y
325
N
C
Y
326
N
C
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
R
C
N
351
N
O
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
N
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
N
419
N
C
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
N
320
N
sing
N
321
N
sing
Y
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
Y
360
N
doub
Y
361
N
sing
Y
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
Y
388
N
doub
Y
389
N
sing
Y
390
N
sing
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
To be Published
0353
Structural Studies of an Efficient Catalytic Antibody Operating by Ping-Pong and Induced Fit Mechanisms
10.2210/pdb1um4/pdb
pdb_00001um4
100
1
CCD
1999-01-01
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
BL9-2
SSRL
1.0
SYNCHROTRON
SSRL BEAMLINE BL9-2
23896.475
Antibody 21H3 L chain
1
man
polymer
23002.742
Antibody 21H3 H chain
1
man
polymer
332.311
(1R)-1-PHENYLETHYL 4-(ACETYLAMINO)BENZYLPHOSPHONATE
1
syn
non-polymer
18.015
water
242
nat
water
no
no
LDIQMTQSPSSLSASLGERVSLTCRASQEISGYLYWLQQKPDGTIKRLIYAGSTLDSGVPKRFSGSRSGSDYSLTISSLE
SEDFADYYCLQYASYPRTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS
QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGAGA
LDIQMTQSPSSLSASLGERVSLTCRASQEISGYLYWLQQKPDGTIKRLIYAGSTLDSGVPKRFSGSRSGSDYSLTISSLE
SEDFADYYCLQYASYPRTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS
QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGAGA
L
polypeptide(L)
no
no
VQLQQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYL
ELSSLTSEDSAVYYCARSSMSDPGANWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS
GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
VQLQQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYL
ELSSLTSEDSAVYYCARSSMSDPGANWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS
GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
10090
Mus musculus
562
Escherichia coli
house mouse
Mus
Escherichia
sample
10090
Mus musculus
562
Escherichia coli
1
2.06
39.81
VAPOR DIFFUSION, HANGING DROP
4.25
PEG4000, lithium sulfate, pH 4.25, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2004-10-05
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
the same protein complexed with SS1
the same protein
PDBJ
Y
PDBJ
2003-09-23
REL
SH4
(1R)-1-PHENYLETHYL 4-(ACETYLAMINO)BENZYLPHOSPHONATE
HOH
water
SH4
1001
3
SH4
SH4
1001
H
WAT
5
4
HOH
HOH
221
L
WAT
6
4
HOH
HOH
222
L
WAT
12
4
HOH
HOH
223
L
WAT
15
4
HOH
HOH
224
L
WAT
18
4
HOH
HOH
225
L
WAT
19
4
HOH
HOH
226
L
WAT
24
4
HOH
HOH
227
L
WAT
25
4
HOH
HOH
228
L
WAT
28
4
HOH
HOH
229
L
WAT
30
4
HOH
HOH
230
L
WAT
31
4
HOH
HOH
231
L
WAT
32
4
HOH
HOH
232
L
WAT
33
4
HOH
HOH
233
L
WAT
35
4
HOH
HOH
234
L
WAT
40
4
HOH
HOH
235
L
WAT
41
4
HOH
HOH
236
L
WAT
44
4
HOH
HOH
237
L
WAT
48
4
HOH
HOH
238
L
WAT
56
4
HOH
HOH
239
L
WAT
59
4
HOH
HOH
240
L
WAT
60
4
HOH
HOH
241
L
WAT
61
4
HOH
HOH
242
L
WAT
62
4
HOH
HOH
243
L
WAT
63
4
HOH
HOH
244
L
WAT
65
4
HOH
HOH
245
L
WAT
67
4
HOH
HOH
246
L
WAT
69
4
HOH
HOH
247
L
WAT
70
4
HOH
HOH
248
L
WAT
73
4
HOH
HOH
249
L
WAT
76
4
HOH
HOH
250
L
WAT
77
4
HOH
HOH
251
L
WAT
78
4
HOH
HOH
252
L
WAT
79
4
HOH
HOH
253
L
WAT
80
4
HOH
HOH
254
L
WAT
84
4
HOH
HOH
255
L
WAT
85
4
HOH
HOH
256
L
WAT
90
4
HOH
HOH
257
L
WAT
91
4
HOH
HOH
258
L
WAT
92
4
HOH
HOH
259
L
WAT
94
4
HOH
HOH
260
L
WAT
96
4
HOH
HOH
261
L
WAT
97
4
HOH
HOH
262
L
WAT
98
4
HOH
HOH
263
L
WAT
102
4
HOH
HOH
264
L
WAT
103
4
HOH
HOH
265
L
WAT
108
4
HOH
HOH
266
L
WAT
110
4
HOH
HOH
267
L
WAT
112
4
HOH
HOH
268
L
WAT
114
4
HOH
HOH
269
L
WAT
115
4
HOH
HOH
270
L
WAT
117
4
HOH
HOH
271
L
WAT
118
4
HOH
HOH
272
L
WAT
119
4
HOH
HOH
273
L
WAT
120
4
HOH
HOH
274
L
WAT
123
4
HOH
HOH
275
L
WAT
124
4
HOH
HOH
276
L
WAT
126
4
HOH
HOH
277
L
WAT
127
4
HOH
HOH
278
L
WAT
130
4
HOH
HOH
279
L
WAT
134
4
HOH
HOH
280
L
WAT
135
4
HOH
HOH
281
L
WAT
136
4
HOH
HOH
282
L
WAT
137
4
HOH
HOH
283
L
WAT
140
4
HOH
HOH
284
L
WAT
141
4
HOH
HOH
285
L
WAT
142
4
HOH
HOH
286
L
WAT
143
4
HOH
HOH
287
L
WAT
144
4
HOH
HOH
288
L
WAT
145
4
HOH
HOH
289
L
WAT
146
4
HOH
HOH
290
L
WAT
148
4
HOH
HOH
291
L
WAT
152
4
HOH
HOH
292
L
WAT
154
4
HOH
HOH
293
L
WAT
156
4
HOH
HOH
294
L
WAT
158
4
HOH
HOH
295
L
WAT
160
4
HOH
HOH
296
L
WAT
164
4
HOH
HOH
297
L
WAT
167
4
HOH
HOH
298
L
WAT
170
4
HOH
HOH
299
L
WAT
173
4
HOH
HOH
300
L
WAT
176
4
HOH
HOH
301
L
WAT
179
4
HOH
HOH
302
L
WAT
180
4
HOH
HOH
303
L
WAT
182
4
HOH
HOH
304
L
WAT
183
4
HOH
HOH
305
L
WAT
184
4
HOH
HOH
306
L
WAT
185
4
HOH
HOH
307
L
WAT
186
4
HOH
HOH
308
L
WAT
187
4
HOH
HOH
309
L
WAT
190
4
HOH
HOH
310
L
WAT
191
4
HOH
HOH
311
L
WAT
192
4
HOH
HOH
312
L
WAT
193
4
HOH
HOH
313
L
WAT
194
4
HOH
HOH
314
L
WAT
195
4
HOH
HOH
315
L
WAT
196
4
HOH
HOH
316
L
WAT
199
4
HOH
HOH
317
L
WAT
206
4
HOH
HOH
318
L
WAT
212
4
HOH
HOH
319
L
WAT
214
4
HOH
HOH
320
L
WAT
215
4
HOH
HOH
321
L
WAT
216
4
HOH
HOH
322
L
WAT
217
4
HOH
HOH
323
L
WAT
221
4
HOH
HOH
324
L
WAT
223
4
HOH
HOH
325
L
WAT
224
4
HOH
HOH
326
L
WAT
225
4
HOH
HOH
327
L
WAT
226
4
HOH
HOH
328
L
WAT
227
4
HOH
HOH
329
L
WAT
229
4
HOH
HOH
330
L
WAT
232
4
HOH
HOH
331
L
WAT
236
4
HOH
HOH
332
L
WAT
238
4
HOH
HOH
333
L
WAT
241
4
HOH
HOH
334
L
WAT
1
4
HOH
HOH
1002
H
WAT
2
4
HOH
HOH
1003
H
WAT
3
4
HOH
HOH
1004
H
WAT
4
4
HOH
HOH
1005
H
WAT
7
4
HOH
HOH
1006
H
WAT
8
4
HOH
HOH
1007
H
WAT
9
4
HOH
HOH
1008
H
WAT
10
4
HOH
HOH
1009
H
WAT
11
4
HOH
HOH
1010
H
WAT
13
4
HOH
HOH
1011
H
WAT
14
4
HOH
HOH
1012
H
WAT
16
4
HOH
HOH
1013
H
WAT
17
4
HOH
HOH
1014
H
WAT
20
4
HOH
HOH
1015
H
WAT
21
4
HOH
HOH
1016
H
WAT
22
4
HOH
HOH
1017
H
WAT
23
4
HOH
HOH
1018
H
WAT
26
4
HOH
HOH
1019
H
WAT
27
4
HOH
HOH
1020
H
WAT
29
4
HOH
HOH
1021
H
WAT
34
4
HOH
HOH
1022
H
WAT
36
4
HOH
HOH
1023
H
WAT
37
4
HOH
HOH
1024
H
WAT
38
4
HOH
HOH
1025
H
WAT
39
4
HOH
HOH
1026
H
WAT
42
4
HOH
HOH
1027
H
WAT
43
4
HOH
HOH
1028
H
WAT
45
4
HOH
HOH
1029
H
WAT
46
4
HOH
HOH
1030
H
WAT
47
4
HOH
HOH
1031
H
WAT
49
4
HOH
HOH
1032
H
WAT
50
4
HOH
HOH
1033
H
WAT
51
4
HOH
HOH
1034
H
WAT
52
4
HOH
HOH
1035
H
WAT
53
4
HOH
HOH
1036
H
WAT
54
4
HOH
HOH
1037
H
WAT
55
4
HOH
HOH
1038
H
WAT
57
4
HOH
HOH
1039
H
WAT
58
4
HOH
HOH
1040
H
WAT
64
4
HOH
HOH
1041
H
WAT
66
4
HOH
HOH
1042
H
WAT
68
4
HOH
HOH
1043
H
WAT
71
4
HOH
HOH
1044
H
WAT
72
4
HOH
HOH
1045
H
WAT
74
4
HOH
HOH
1046
H
WAT
75
4
HOH
HOH
1047
H
WAT
81
4
HOH
HOH
1048
H
WAT
82
4
HOH
HOH
1049
H
WAT
83
4
HOH
HOH
1050
H
WAT
86
4
HOH
HOH
1051
H
WAT
87
4
HOH
HOH
1052
H
WAT
88
4
HOH
HOH
1053
H
WAT
89
4
HOH
HOH
1054
H
WAT
93
4
HOH
HOH
1055
H
WAT
95
4
HOH
HOH
1056
H
WAT
99
4
HOH
HOH
1057
H
WAT
100
4
HOH
HOH
1058
H
WAT
101
4
HOH
HOH
1059
H
WAT
104
4
HOH
HOH
1060
H
WAT
105
4
HOH
HOH
1061
H
WAT
106
4
HOH
HOH
1062
H
WAT
107
4
HOH
HOH
1063
H
WAT
109
4
HOH
HOH
1064
H
WAT
111
4
HOH
HOH
1065
H
WAT
113
4
HOH
HOH
1066
H
WAT
116
4
HOH
HOH
1067
H
WAT
121
4
HOH
HOH
1068
H
WAT
122
4
HOH
HOH
1069
H
WAT
125
4
HOH
HOH
1070
H
WAT
128
4
HOH
HOH
1071
H
WAT
129
4
HOH
HOH
1072
H
WAT
131
4
HOH
HOH
1073
H
WAT
132
4
HOH
HOH
1074
H
WAT
133
4
HOH
HOH
1075
H
WAT
138
4
HOH
HOH
1076
H
WAT
139
4
HOH
HOH
1077
H
WAT
147
4
HOH
HOH
1078
H
WAT
149
4
HOH
HOH
1079
H
WAT
150
4
HOH
HOH
1080
H
WAT
151
4
HOH
HOH
1081
H
WAT
153
4
HOH
HOH
1082
H
WAT
155
4
HOH
HOH
1083
H
WAT
157
4
HOH
HOH
1084
H
WAT
159
4
HOH
HOH
1085
H
WAT
161
4
HOH
HOH
1086
H
WAT
162
4
HOH
HOH
1087
H
WAT
163
4
HOH
HOH
1088
H
WAT
165
4
HOH
HOH
1089
H
WAT
166
4
HOH
HOH
1090
H
WAT
168
4
HOH
HOH
1091
H
WAT
169
4
HOH
HOH
1092
H
WAT
171
4
HOH
HOH
1093
H
WAT
172
4
HOH
HOH
1094
H
WAT
174
4
HOH
HOH
1095
H
WAT
175
4
HOH
HOH
1096
H
WAT
177
4
HOH
HOH
1097
H
WAT
178
4
HOH
HOH
1098
H
WAT
181
4
HOH
HOH
1099
H
WAT
188
4
HOH
HOH
1100
H
WAT
189
4
HOH
HOH
1101
H
WAT
197
4
HOH
HOH
1102
H
WAT
198
4
HOH
HOH
1103
H
WAT
200
4
HOH
HOH
1104
H
WAT
201
4
HOH
HOH
1105
H
WAT
202
4
HOH
HOH
1106
H
WAT
203
4
HOH
HOH
1107
H
WAT
204
4
HOH
HOH
1108
H
WAT
205
4
HOH
HOH
1109
H
WAT
207
4
HOH
HOH
1110
H
WAT
208
4
HOH
HOH
1111
H
WAT
209
4
HOH
HOH
1112
H
WAT
210
4
HOH
HOH
1113
H
WAT
211
4
HOH
HOH
1114
H
WAT
213
4
HOH
HOH
1115
H
WAT
218
4
HOH
HOH
1116
H
WAT
219
4
HOH
HOH
1117
H
WAT
220
4
HOH
HOH
1118
H
WAT
222
4
HOH
HOH
1119
H
WAT
228
4
HOH
HOH
1120
H
WAT
230
4
HOH
HOH
1121
H
WAT
231
4
HOH
HOH
1122
H
WAT
233
4
HOH
HOH
1123
H
WAT
234
4
HOH
HOH
1124
H
WAT
235
4
HOH
HOH
1125
H
WAT
237
4
HOH
HOH
1126
H
WAT
239
4
HOH
HOH
1127
H
WAT
240
4
HOH
HOH
1128
H
WAT
242
4
HOH
HOH
1129
H
LEU
2
n
1
LEU
2
L
ASP
3
n
2
ASP
3
L
ILE
4
n
3
ILE
4
L
GLN
5
n
4
GLN
5
L
MET
6
n
5
MET
6
L
THR
7
n
6
THR
7
L
GLN
8
n
7
GLN
8
L
SER
9
n
8
SER
9
L
PRO
10
n
9
PRO
10
L
SER
11
n
10
SER
11
L
SER
12
n
11
SER
12
L
LEU
13
n
12
LEU
13
L
SER
14
n
13
SER
14
L
ALA
15
n
14
ALA
15
L
SER
16
n
15
SER
16
L
LEU
17
n
16
LEU
17
L
GLY
18
n
17
GLY
18
L
GLU
19
n
18
GLU
19
L
ARG
20
n
19
ARG
20
L
VAL
21
n
20
VAL
21
L
SER
22
n
21
SER
22
L
LEU
23
n
22
LEU
23
L
THR
24
n
23
THR
24
L
CYS
25
n
24
CYS
25
L
ARG
26
n
25
ARG
26
L
ALA
27
n
26
ALA
27
L
SER
28
n
27
SER
28
L
GLN
29
n
28
GLN
29
L
GLU
30
n
29
GLU
30
L
ILE
31
n
30
ILE
31
L
SER
32
n
31
SER
32
L
GLY
33
n
32
GLY
33
L
TYR
34
n
33
TYR
34
L
LEU
35
n
34
LEU
35
L
TYR
36
n
35
TYR
36
L
TRP
37
n
36
TRP
37
L
LEU
38
n
37
LEU
38
L
GLN
39
n
38
GLN
39
L
GLN
40
n
39
GLN
40
L
LYS
41
n
40
LYS
41
L
PRO
42
n
41
PRO
42
L
ASP
43
n
42
ASP
43
L
GLY
44
n
43
GLY
44
L
THR
45
n
44
THR
45
L
ILE
46
n
45
ILE
46
L
LYS
47
n
46
LYS
47
L
ARG
48
n
47
ARG
48
L
LEU
49
n
48
LEU
49
L
ILE
50
n
49
ILE
50
L
TYR
51
n
50
TYR
51
L
ALA
52
n
51
ALA
52
L
GLY
53
n
52
GLY
53
L
SER
54
n
53
SER
54
L
THR
55
n
54
THR
55
L
LEU
56
n
55
LEU
56
L
ASP
57
n
56
ASP
57
L
SER
58
n
57
SER
58
L
GLY
59
n
58
GLY
59
L
VAL
60
n
59
VAL
60
L
PRO
61
n
60
PRO
61
L
LYS
62
n
61
LYS
62
L
ARG
63
n
62
ARG
63
L
PHE
64
n
63
PHE
64
L
SER
65
n
64
SER
65
L
GLY
66
n
65
GLY
66
L
SER
67
n
66
SER
67
L
ARG
68
n
67
ARG
68
L
SER
69
n
68
SER
69
L
GLY
70
n
69
GLY
70
L
SER
71
n
70
SER
71
L
ASP
72
n
71
ASP
72
L
TYR
73
n
72
TYR
73
L
SER
74
n
73
SER
74
L
LEU
75
n
74
LEU
75
L
THR
76
n
75
THR
76
L
ILE
77
n
76
ILE
77
L
SER
78
n
77
SER
78
L
SER
79
n
78
SER
79
L
LEU
80
n
79
LEU
80
L
GLU
81
n
80
GLU
81
L
SER
82
n
81
SER
82
L
GLU
83
n
82
GLU
83
L
ASP
84
n
83
ASP
84
L
PHE
85
n
84
PHE
85
L
ALA
86
n
85
ALA
86
L
ASP
87
n
86
ASP
87
L
TYR
88
n
87
TYR
88
L
TYR
89
n
88
TYR
89
L
CYS
90
n
89
CYS
90
L
LEU
91
n
90
LEU
91
L
GLN
92
n
91
GLN
92
L
TYR
93
n
92
TYR
93
L
ALA
94
n
93
ALA
94
L
SER
95
n
94
SER
95
L
TYR
96
n
95
TYR
96
L
PRO
97
n
96
PRO
97
L
ARG
98
n
97
ARG
98
L
THR
99
n
98
THR
99
L
PHE
100
n
99
PHE
100
L
GLY
101
n
100
GLY
101
L
GLY
102
n
101
GLY
102
L
GLY
103
n
102
GLY
103
L
THR
104
n
103
THR
104
L
LYS
105
n
104
LYS
105
L
VAL
106
n
105
VAL
106
L
GLU
107
n
106
GLU
107
L
ILE
108
n
107
ILE
108
L
LYS
109
n
108
LYS
109
L
ARG
110
n
109
ARG
110
L
THR
111
n
110
THR
111
L
VAL
112
n
111
VAL
112
L
ALA
113
n
112
ALA
113
L
ALA
114
n
113
ALA
114
L
PRO
115
n
114
PRO
115
L
SER
116
n
115
SER
116
L
VAL
117
n
116
VAL
117
L
PHE
118
n
117
PHE
118
L
ILE
119
n
118
ILE
119
L
PHE
120
n
119
PHE
120
L
PRO
121
n
120
PRO
121
L
PRO
122
n
121
PRO
122
L
SER
123
n
122
SER
123
L
ASP
124
n
123
ASP
124
L
GLU
125
n
124
GLU
125
L
GLN
126
n
125
GLN
126
L
LEU
127
n
126
LEU
127
L
LYS
128
n
127
LYS
128
L
SER
129
n
128
SER
129
L
GLY
130
n
129
GLY
130
L
THR
131
n
130
THR
131
L
ALA
132
n
131
ALA
132
L
SER
133
n
132
SER
133
L
VAL
134
n
133
VAL
134
L
VAL
135
n
134
VAL
135
L
CYS
136
n
135
CYS
136
L
LEU
137
n
136
LEU
137
L
LEU
138
n
137
LEU
138
L
ASN
139
n
138
ASN
139
L
ASN
140
n
139
ASN
140
L
PHE
141
n
140
PHE
141
L
TYR
142
n
141
TYR
142
L
PRO
143
n
142
PRO
143
L
ARG
144
n
143
ARG
144
L
GLU
145
n
144
GLU
145
L
ALA
146
n
145
ALA
146
L
LYS
147
n
146
LYS
147
L
VAL
148
n
147
VAL
148
L
GLN
149
n
148
GLN
149
L
TRP
150
n
149
TRP
150
L
LYS
151
n
150
LYS
151
L
VAL
152
n
151
VAL
152
L
ASP
153
n
152
ASP
153
L
ASN
154
n
153
ASN
154
L
ALA
155
n
154
ALA
155
L
LEU
156
n
155
LEU
156
L
GLN
157
n
156
GLN
157
L
SER
158
n
157
SER
158
L
GLY
159
n
158
GLY
159
L
ASN
160
n
159
ASN
160
L
SER
161
n
160
SER
161
L
GLN
162
n
161
GLN
162
L
GLU
163
n
162
GLU
163
L
SER
164
n
163
SER
164
L
VAL
165
n
164
VAL
165
L
THR
166
n
165
THR
166
L
GLU
167
n
166
GLU
167
L
GLN
168
n
167
GLN
168
L
ASP
169
n
168
ASP
169
L
SER
170
n
169
SER
170
L
LYS
171
n
170
LYS
171
L
ASP
172
n
171
ASP
172
L
SER
173
n
172
SER
173
L
THR
174
n
173
THR
174
L
TYR
175
n
174
TYR
175
L
SER
176
n
175
SER
176
L
LEU
177
n
176
LEU
177
L
SER
178
n
177
SER
178
L
SER
179
n
178
SER
179
L
THR
180
n
179
THR
180
L
LEU
181
n
180
LEU
181
L
THR
182
n
181
THR
182
L
LEU
183
n
182
LEU
183
L
SER
184
n
183
SER
184
L
LYS
185
n
184
LYS
185
L
ALA
186
n
185
ALA
186
L
ASP
187
n
186
ASP
187
L
TYR
188
n
187
TYR
188
L
GLU
189
n
188
GLU
189
L
LYS
190
n
189
LYS
190
L
HIS
191
n
190
HIS
191
L
LYS
192
n
191
LYS
192
L
VAL
193
n
192
VAL
193
L
TYR
194
n
193
TYR
194
L
ALA
195
n
194
ALA
195
L
CYS
196
n
195
CYS
196
L
GLU
197
n
196
GLU
197
L
VAL
198
n
197
VAL
198
L
THR
199
n
198
THR
199
L
HIS
200
n
199
HIS
200
L
GLN
201
n
200
GLN
201
L
GLY
202
n
201
GLY
202
L
LEU
203
n
202
LEU
203
L
SER
204
n
203
SER
204
L
SER
205
n
204
SER
205
L
PRO
206
n
205
PRO
206
L
VAL
207
n
206
VAL
207
L
THR
208
n
207
THR
208
L
LYS
209
n
208
LYS
209
L
SER
210
n
209
SER
210
L
PHE
211
n
210
PHE
211
L
ASN
212
n
211
ASN
212
L
ARG
213
n
212
ARG
213
L
GLY
214
n
213
GLY
214
L
GLU
215
n
214
GLU
215
L
CYS
216
n
215
CYS
216
L
GLY
217
n
216
GLY
217
L
ALA
218
n
217
ALA
218
L
GLY
219
n
218
GLY
219
L
ALA
220
n
219
ALA
220
L
VAL
3
n
1
VAL
3
H
GLN
4
n
2
GLN
4
H
LEU
5
n
3
LEU
5
H
GLN
6
n
4
GLN
6
H
GLN
7
n
5
GLN
7
H
SER
8
n
6
SER
8
H
GLY
9
n
7
GLY
9
H
PRO
10
n
8
PRO
10
H
VAL
11
n
9
VAL
11
H
LEU
12
n
10
LEU
12
H
VAL
13
n
11
VAL
13
H
LYS
14
n
12
LYS
14
H
PRO
15
n
13
PRO
15
H
GLY
16
n
14
GLY
16
H
GLY
17
n
15
GLY
17
H
SER
18
n
16
SER
18
H
VAL
19
n
17
VAL
19
H
LYS
20
n
18
LYS
20
H
MET
21
n
19
MET
21
H
SER
22
n
20
SER
22
H
CYS
23
n
21
CYS
23
H
LYS
24
n
22
LYS
24
H
ALA
25
n
23
ALA
25
H
SER
26
n
24
SER
26
H
GLU
27
n
25
GLU
27
H
TYR
28
n
26
TYR
28
H
THR
29
n
27
THR
29
H
LEU
30
n
28
LEU
30
H
THR
31
n
29
THR
31
H
SER
32
n
30
SER
32
H
TYR
33
n
31
TYR
33
H
LEU
34
n
32
LEU
34
H
PHE
35
n
33
PHE
35
H
GLN
36
n
34
GLN
36
H
TRP
37
n
35
TRP
37
H
VAL
38
n
36
VAL
38
H
LYS
39
n
37
LYS
39
H
GLN
40
n
38
GLN
40
H
LYS
41
n
39
LYS
41
H
SER
42
n
40
SER
42
H
GLY
43
n
41
GLY
43
H
GLN
44
n
42
GLN
44
H
GLY
45
n
43
GLY
45
H
LEU
46
n
44
LEU
46
H
GLU
47
n
45
GLU
47
H
TRP
48
n
46
TRP
48
H
ILE
49
n
47
ILE
49
H
GLY
50
n
48
GLY
50
H
TYR
51
n
49
TYR
51
H
ILE
52
n
50
ILE
52
H
TYR
53
n
51
TYR
53
H
PRO
54
n
52
PRO
54
H
TYR
55
n
53
TYR
55
H
ASN
56
n
54
ASN
56
H
GLY
57
n
55
GLY
57
H
GLY
58
n
56
GLY
58
H
THR
59
n
57
THR
59
H
ARG
60
n
58
ARG
60
H
TYR
61
n
59
TYR
61
H
ASN
62
n
60
ASN
62
H
GLU
63
n
61
GLU
63
H
LYS
64
n
62
LYS
64
H
PHE
65
n
63
PHE
65
H
ARG
66
n
64
ARG
66
H
GLY
67
n
65
GLY
67
H
LYS
68
n
66
LYS
68
H
ALA
69
n
67
ALA
69
H
THR
70
n
68
THR
70
H
LEU
71
n
69
LEU
71
H
THR
72
n
70
THR
72
H
SER
73
n
71
SER
73
H
ASP
74
n
72
ASP
74
H
LYS
75
n
73
LYS
75
H
SER
76
n
74
SER
76
H
SER
77
n
75
SER
77
H
ASN
78
n
76
ASN
78
H
THR
79
n
77
THR
79
H
ALA
80
n
78
ALA
80
H
TYR
81
n
79
TYR
81
H
LEU
82
n
80
LEU
82
H
GLU
83
n
81
GLU
83
H
LEU
84
n
82
LEU
84
H
SER
85
n
83
SER
85
H
SER
86
n
84
SER
86
H
LEU
87
n
85
LEU
87
H
THR
88
n
86
THR
88
H
SER
89
n
87
SER
89
H
GLU
90
n
88
GLU
90
H
ASP
91
n
89
ASP
91
H
SER
92
n
90
SER
92
H
ALA
93
n
91
ALA
93
H
VAL
94
n
92
VAL
94
H
TYR
95
n
93
TYR
95
H
TYR
96
n
94
TYR
96
H
CYS
97
n
95
CYS
97
H
ALA
98
n
96
ALA
98
H
ARG
99
n
97
ARG
99
H
SER
100
n
98
SER
100
H
SER
101
n
99
SER
101
H
MET
102
n
100
MET
102
H
SER
103
n
101
SER
103
H
ASP
104
n
102
ASP
104
H
PRO
105
n
103
PRO
105
H
GLY
106
n
104
GLY
106
H
ALA
107
n
105
ALA
107
H
ASN
108
n
106
ASN
108
H
TRP
109
n
107
TRP
109
H
GLY
110
n
108
GLY
110
H
PRO
111
n
109
PRO
111
H
GLY
112
n
110
GLY
112
H
THR
113
n
111
THR
113
H
LEU
114
n
112
LEU
114
H
VAL
115
n
113
VAL
115
H
THR
116
n
114
THR
116
H
VAL
117
n
115
VAL
117
H
SER
118
n
116
SER
118
H
SER
119
n
117
SER
119
H
ALA
120
n
118
ALA
120
H
SER
121
n
119
SER
121
H
THR
122
n
120
THR
122
H
LYS
123
n
121
LYS
123
H
GLY
124
n
122
GLY
124
H
PRO
125
n
123
PRO
125
H
SER
126
n
124
SER
126
H
VAL
127
n
125
VAL
127
H
PHE
128
n
126
PHE
128
H
PRO
129
n
127
PRO
129
H
LEU
130
n
128
LEU
130
H
ALA
131
n
129
ALA
131
H
PRO
132
n
130
PRO
132
H
SER
133
n
131
SER
133
H
SER
134
n
132
SER
134
H
LYS
135
n
133
LYS
135
H
SER
136
n
134
SER
136
H
THR
137
n
135
THR
137
H
SER
138
n
136
SER
138
H
GLY
139
n
137
GLY
139
H
GLY
140
n
138
GLY
140
H
THR
141
n
139
THR
141
H
ALA
142
n
140
ALA
142
H
ALA
143
n
141
ALA
143
H
LEU
144
n
142
LEU
144
H
GLY
145
n
143
GLY
145
H
CYS
146
n
144
CYS
146
H
LEU
147
n
145
LEU
147
H
VAL
148
n
146
VAL
148
H
LYS
149
n
147
LYS
149
H
ASP
150
n
148
ASP
150
H
TYR
151
n
149
TYR
151
H
PHE
152
n
150
PHE
152
H
PRO
153
n
151
PRO
153
H
GLU
154
n
152
GLU
154
H
PRO
155
n
153
PRO
155
H
VAL
156
n
154
VAL
156
H
THR
157
n
155
THR
157
H
VAL
158
n
156
VAL
158
H
SER
159
n
157
SER
159
H
TRP
160
n
158
TRP
160
H
ASN
161
n
159
ASN
161
H
SER
162
n
160
SER
162
H
GLY
163
n
161
GLY
163
H
ALA
164
n
162
ALA
164
H
LEU
165
n
163
LEU
165
H
THR
166
n
164
THR
166
H
SER
167
n
165
SER
167
H
GLY
168
n
166
GLY
168
H
VAL
169
n
167
VAL
169
H
HIS
170
n
168
HIS
170
H
THR
171
n
169
THR
171
H
PHE
172
n
170
PHE
172
H
PRO
173
n
171
PRO
173
H
ALA
174
n
172
ALA
174
H
VAL
175
n
173
VAL
175
H
LEU
176
n
174
LEU
176
H
GLN
177
n
175
GLN
177
H
SER
178
n
176
SER
178
H
SER
179
n
177
SER
179
H
GLY
180
n
178
GLY
180
H
LEU
181
n
179
LEU
181
H
TYR
182
n
180
TYR
182
H
SER
183
n
181
SER
183
H
LEU
184
n
182
LEU
184
H
SER
185
n
183
SER
185
H
SER
186
n
184
SER
186
H
VAL
187
n
185
VAL
187
H
VAL
188
n
186
VAL
188
H
THR
189
n
187
THR
189
H
VAL
190
n
188
VAL
190
H
PRO
191
n
189
PRO
191
H
SER
192
n
190
SER
192
H
SER
193
n
191
SER
193
H
SER
194
n
192
SER
194
H
LEU
195
n
193
LEU
195
H
GLY
196
n
194
GLY
196
H
THR
197
n
195
THR
197
H
GLN
198
n
196
GLN
198
H
THR
199
n
197
THR
199
H
TYR
200
n
198
TYR
200
H
ILE
201
n
199
ILE
201
H
CYS
202
n
200
CYS
202
H
ASN
203
n
201
ASN
203
H
VAL
204
n
202
VAL
204
H
ASN
205
n
203
ASN
205
H
HIS
206
n
204
HIS
206
H
LYS
207
n
205
LYS
207
H
PRO
208
n
206
PRO
208
H
SER
209
n
207
SER
209
H
ASN
210
n
208
ASN
210
H
THR
211
n
209
THR
211
H
LYS
212
n
210
LYS
212
H
VAL
213
n
211
VAL
213
H
ASP
214
n
212
ASP
214
H
LYS
215
n
213
LYS
215
H
LYS
216
n
214
LYS
216
H
VAL
217
n
215
VAL
217
H
GLU
218
n
216
GLU
218
H
PRO
219
n
217
PRO
219
H
author_and_software_defined_assembly
PISA
2
dimeric
4430
-15
18880
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
N
SER
9
A
N
SER
8
L
O
THR
24
A
O
THR
23
L
N
LEU
23
A
N
LEU
22
L
O
LEU
75
A
O
LEU
74
L
O
ASP
72
A
O
ASP
71
L
N
SER
69
A
N
SER
68
L
N
LEU
13
A
N
LEU
12
L
O
LYS
105
A
O
LYS
104
L
O
VAL
106
A
O
VAL
105
L
N
ALA
86
A
N
ALA
85
L
O
ASP
87
A
O
ASP
86
L
N
GLN
40
A
N
GLN
39
L
N
TRP
37
A
N
TRP
36
L
O
LEU
49
A
O
LEU
48
L
N
TYR
51
A
N
TYR
50
L
O
THR
55
A
O
THR
54
L
N
LEU
13
A
N
LEU
12
L
O
LYS
105
A
O
LYS
104
L
O
VAL
106
A
O
VAL
105
L
N
ALA
86
A
N
ALA
85
L
N
GLN
92
A
N
GLN
91
L
O
THR
99
A
O
THR
98
L
N
PHE
118
A
N
PHE
117
L
O
LEU
137
A
O
LEU
136
L
N
ALA
132
A
N
ALA
131
L
O
LEU
183
A
O
LEU
182
L
O
THR
180
A
O
THR
179
L
N
GLN
162
A
N
GLN
161
L
O
ALA
155
A
O
ALA
154
L
N
VAL
152
A
N
VAL
151
L
N
GLN
149
A
N
GLN
148
L
O
GLU
197
A
O
GLU
196
L
N
VAL
198
A
N
VAL
197
L
O
VAL
207
A
O
VAL
206
H
N
GLN
6
B
N
GLN
4
H
O
LYS
24
B
O
LYS
22
H
N
CYS
23
B
N
CYS
21
H
O
ALA
80
B
O
ALA
78
H
O
TYR
81
B
O
TYR
79
H
N
THR
72
B
N
THR
70
H
N
VAL
11
B
N
VAL
9
H
O
THR
116
B
O
THR
114
H
O
VAL
115
B
O
VAL
113
H
N
ALA
93
B
N
ALA
91
H
O
TYR
96
B
O
TYR
94
H
N
VAL
38
B
N
VAL
36
H
N
LYS
39
B
N
LYS
37
H
O
GLU
47
B
O
GLU
45
H
N
TYR
51
B
N
TYR
49
H
O
ARG
60
B
O
ARG
58
H
N
VAL
11
B
N
VAL
9
H
O
THR
116
B
O
THR
114
H
O
VAL
115
B
O
VAL
113
H
N
ALA
93
B
N
ALA
91
H
N
ARG
99
B
N
ARG
97
H
O
ASN
108
B
O
ASN
106
H
N
PHE
128
B
N
PHE
126
H
O
LEU
147
B
O
LEU
145
H
N
ALA
142
B
N
ALA
140
H
O
VAL
190
B
O
VAL
188
H
O
VAL
187
B
O
VAL
185
H
N
HIS
170
B
N
HIS
168
H
N
SER
138
B
N
SER
136
H
O
THR
141
B
O
THR
139
H
N
ALA
142
B
N
ALA
140
H
O
VAL
190
B
O
VAL
188
H
O
SER
183
B
O
SER
181
H
N
VAL
175
B
N
VAL
173
H
N
SER
159
B
N
SER
157
H
O
ASN
203
B
O
ASN
201
H
N
VAL
204
B
N
VAL
202
H
O
VAL
213
B
O
VAL
211
1
L
CG
LEU
2
A
CG
LEU
1
1
Y
1
L
CD1
LEU
2
A
CD1
LEU
1
1
Y
1
L
CD2
LEU
2
A
CD2
LEU
1
1
Y
1
L
CB
CYS
216
A
CB
CYS
215
1
Y
1
L
SG
CYS
216
A
SG
CYS
215
1
Y
1
H
CG1
VAL
3
B
CG1
VAL
1
1
Y
1
H
CG2
VAL
3
B
CG2
VAL
1
1
Y
1
L
ALA
86
177.84
-179.24
1
L
LYS
192
-121.66
-55.73
1
L
CYS
216
81.87
-76.32
1
L
ALA
218
-135.76
-135.08
1
H
TYR
28
-65.72
18.59
1
H
THR
29
-43.11
90.22
1
H
SER
86
36.08
59.19
protein_rep.param
protein.top
carbohydrate.param
carbohydrate.top
water_rep.param
water.top
sha.param
sha.top
70.97
20.40
4.01
-1.00
0.00
0.00
5.74
0.00
-4.75
Missing atoms: following residues in REMARK 470 were not built with all atoms based on the available electron density data.
0.249
0.006
0.223
1.80
19.10
1857
38915
37358
5.0
96.0
1.00
1.00
RANDOM
1
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
Engh & Huber
CNS bulk solvent model used
34.997
0.396111
0.25
0.21
5.00
0.11
0.04
1.80
1.80
19.10
242
3555
23
0
3290
0.006
1.5
26.9
0.82
0.254
0.017
0.221
1.88
213
4241
4778
4454
8
4.8
93.2
0.253
0.016
0.218
1.98
237
4310
4794
4547
8
5.2
94.8
0.287
0.018
0.224
2.10
249
4358
4801
4607
8
5.4
96.0
0.239
0.017
0.214
2.27
204
4475
4839
4679
8
4.4
96.7
0.276
0.018
0.235
2.49
224
4490
4833
4714
8
4.8
97.5
0.249
0.016
0.24
2.85
257
4492
4851
4749
8
5.4
97.9
0.275
0.018
0.235
3.59
241
4595
4941
4836
8
5.0
97.9
0.203
0.013
0.205
19.10
232
4540
5114
4772
8
4.9
93.3
10.9
1.80
19.10
1UM4
26
0
35
0
76
0
38910
37358
1347878.94
1.340000
0.0
0
1
96
1.80
1.86
1
94.5
refinement
Axel T. Brunger
axel.brunger@yale.edu
1998
Fortran
CNS
package
1.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
EPMR
Catalytic Antibody 21H3 with hapten
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
L
GLU
81
A
GLU
80
HELX_P
L
PHE
85
A
PHE
84
5
1
5
L
SER
123
A
SER
122
HELX_P
L
LYS
128
A
LYS
127
1
2
6
L
LYS
185
A
LYS
184
HELX_P
L
HIS
191
A
HIS
190
1
3
7
L
GLY
214
A
GLY
213
HELX_P
L
CYS
216
A
CYS
215
5
4
3
H
GLU
63
B
GLU
61
HELX_P
H
ARG
66
B
ARG
64
5
5
4
H
THR
88
B
THR
86
HELX_P
H
SER
92
B
SER
90
5
6
5
H
SER
133
B
SER
131
HELX_P
H
LYS
135
B
LYS
133
5
7
3
H
SER
162
B
SER
160
HELX_P
H
ALA
164
B
ALA
162
5
8
3
H
SER
193
B
SER
191
HELX_P
H
LEU
195
B
LEU
193
5
9
3
H
LYS
207
B
LYS
205
HELX_P
H
ASN
210
B
ASN
208
5
10
4
disulf
2.027
L
CYS
25
A
SG
CYS
24
1_555
L
CYS
90
A
SG
CYS
89
1_555
disulf
2.022
L
CYS
136
A
SG
CYS
135
1_555
L
CYS
196
A
SG
CYS
195
1_555
disulf
2.030
H
CYS
23
B
SG
CYS
21
1_555
H
CYS
97
B
SG
CYS
95
1_555
disulf
2.026
H
CYS
146
B
SG
CYS
144
1_555
H
CYS
202
B
SG
CYS
200
1_555
IMMUNE SYSTEM
catalytic antibody ligand transesterification, IMMUNE SYSTEM
L
SER
9
A
SER
8
1
L
PRO
10
A
PRO
9
-1.36
L
TYR
96
A
TYR
95
1
L
PRO
97
A
PRO
96
0.53
L
TYR
142
A
TYR
141
1
L
PRO
143
A
PRO
142
0.46
H
PHE
152
B
PHE
150
1
H
PRO
153
B
PRO
151
-0.71
H
GLU
154
B
GLU
152
1
H
PRO
155
B
PRO
153
0.44
1UM4
PDB
1
1UM4
1UM4
PDB
2
1UM4
2
220
1UM4
2
220
1UM4
L
1
1
219
3
219
1UM4
3
219
1UM4
H
2
1
217
4
6
4
4
4
4
6
4
4
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
MET
6
A
MET
5
L
SER
9
A
SER
8
L
VAL
21
A
VAL
20
L
ALA
27
A
ALA
26
L
ASP
72
A
ASP
71
L
ILE
77
A
ILE
76
L
PHE
64
A
PHE
63
L
SER
69
A
SER
68
L
SER
12
A
SER
11
L
SER
16
A
SER
15
L
THR
104
A
THR
103
L
LYS
109
A
LYS
108
L
ALA
86
A
ALA
85
L
GLN
92
A
GLN
91
L
LEU
35
A
LEU
34
L
GLN
40
A
GLN
39
L
ILE
46
A
ILE
45
L
TYR
51
A
TYR
50
L
THR
55
A
THR
54
L
LEU
56
A
LEU
55
L
SER
12
A
SER
11
L
SER
16
A
SER
15
L
THR
104
A
THR
103
L
LYS
109
A
LYS
108
L
ALA
86
A
ALA
85
L
GLN
92
A
GLN
91
L
THR
99
A
THR
98
L
PHE
100
A
PHE
99
L
SER
116
A
SER
115
L
PHE
120
A
PHE
119
L
THR
131
A
THR
130
L
PHE
141
A
PHE
140
L
TYR
175
A
TYR
174
L
SER
184
A
SER
183
L
SER
161
A
SER
160
L
VAL
165
A
VAL
164
L
ALA
155
A
ALA
154
L
LEU
156
A
LEU
155
L
ALA
146
A
ALA
145
L
VAL
152
A
VAL
151
L
VAL
193
A
VAL
192
L
HIS
200
A
HIS
199
L
VAL
207
A
VAL
206
L
ASN
212
A
ASN
211
H
GLN
6
B
GLN
4
H
GLN
7
B
GLN
5
H
VAL
19
B
VAL
17
H
LYS
24
B
LYS
22
H
THR
79
B
THR
77
H
LEU
84
B
LEU
82
H
ALA
69
B
ALA
67
H
ASP
74
B
ASP
72
H
VAL
11
B
VAL
9
H
VAL
13
B
VAL
11
H
THR
113
B
THR
111
H
VAL
117
B
VAL
115
H
ALA
93
B
ALA
91
H
SER
101
B
SER
99
H
LEU
34
B
LEU
32
H
GLN
40
B
GLN
38
H
LEU
46
B
LEU
44
H
ILE
52
B
ILE
50
H
THR
59
B
THR
57
H
TYR
61
B
TYR
59
H
VAL
11
B
VAL
9
H
VAL
13
B
VAL
11
H
THR
113
B
THR
111
H
VAL
117
B
VAL
115
H
ALA
93
B
ALA
91
H
SER
101
B
SER
99
H
ASP
104
B
ASP
102
H
TRP
109
B
TRP
107
H
SER
126
B
SER
124
H
LEU
130
B
LEU
128
H
THR
141
B
THR
139
H
TYR
151
B
TYR
149
H
TYR
182
B
TYR
180
H
PRO
191
B
PRO
189
H
VAL
169
B
VAL
167
H
THR
171
B
THR
169
H
THR
137
B
THR
135
H
SER
138
B
SER
136
H
THR
141
B
THR
139
H
TYR
151
B
TYR
149
H
TYR
182
B
TYR
180
H
PRO
191
B
PRO
189
H
VAL
175
B
VAL
173
H
LEU
176
B
LEU
174
H
THR
157
B
THR
155
H
TRP
160
B
TRP
158
H
ILE
201
B
ILE
199
H
HIS
206
B
HIS
204
H
THR
211
B
THR
209
H
LYS
216
B
LYS
214
BINDING SITE FOR RESIDUE SH4 H 1001
H
SH4
1001
Software
13
H
LEU
34
B
LEU
32
13
1_555
H
GLN
36
B
GLN
34
13
1_555
H
ALA
98
B
ALA
96
13
1_555
H
SER
100
B
SER
98
13
1_555
H
SER
101
B
SER
99
13
1_555
H
MET
102
B
MET
100
13
1_555
H
PRO
105
B
PRO
103
13
1_555
H
GLY
106
B
GLY
104
13
1_555
H
TRP
109
B
TRP
107
13
1_555
L
TYR
36
A
TYR
35
13
1_555
L
LEU
91
A
LEU
90
13
1_555
L
TYR
93
A
TYR
92
13
1_555
L
ARG
98
A
ARG
97
13
1_555
19
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