0.011312
0.000000
0.000000
0.000000
0.024077
0.000000
0.000000
0.000000
0.029620
0.00000
0.00000
0.00000
Holloway, D.E.
Chavali, G.B.
Acharya, K.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
88.398
41.533
33.761
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H7 N O3
129.114
n
PYROGLUTAMIC ACID
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
O
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
R
C
N
325
N
O
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
N
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
N
375
N
O
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
Y
264
N
doub
Y
265
N
sing
Y
266
N
sing
N
267
N
sing
Y
268
N
doub
N
269
N
sing
Y
270
N
doub
N
271
N
sing
Y
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
Y
333
N
doub
Y
334
N
sing
Y
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
43
1230
10.1021/BI035654+
14756559
Crystallographic Studies on Structural Features that Determine the Enzymatic Specificity and Potency of Human Angiogenin: Thr44, Thr80 and Residues 38-41
2004
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
285
1209
10.1006/JMBI.1998.2378
9918722
Refined Crystal Structures of Native Human Angiogenin and Two Active Site Variants: Implications for the Unique Functional Properties of an Enzyme Involved in Neovascularisation During Tumour Growth
1999
US
Biochemistry
BICHAW
0033
0006-2960
32
2307
10.1021/BI00060A023
8095159
Alteration of the Enzymatic Specificity of Human Angiogenin by Site-Directed Mutagenesis
1993
10.2210/pdb1un3/pdb
pdb_00001un3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293.0
1
RH/SI MIRROR
CCD
1999-09-20
ADSC CCD
SILICON
SINGLE WAVELENGTH
M
x-ray
1
0.87
1.0
PX9.6
SRS
0.87
SYNCHROTRON
SRS BEAMLINE PX9.6
14165.990
ANGIOGENIN
3.1.27.5
YES
1
man
polymer
18.015
water
78
nat
water
RIBONUCLEASE 5, RNASE 5
no
yes
(PCA)DNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTSPCKDINDFIHGNKRSIKAICENKNGNPHRENLRISKSSF
QVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFRRP
QDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTSPCKDINDFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTT
CKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFRRP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
SYNTHETIC GENE
9606
HOMO SAPIENS
562
ESCHERICHIA COLI
W3110
PANG3
1
2.2
43
5.20
15% PEG 4000, 0.02% DIOXANE, 0.2M SODIUM POTASSIUM TARTRATE, 0.02M SODIUM CITRATE BUFFER, PH 5.2
entity_poly
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Polymer sequence
Data collection
Database references
Refinement description
1
0
2004-02-06
1
1
2011-05-08
1
2
2011-07-13
2
0
2020-03-11
2
1
2023-12-13
_entity_poly.pdbx_seq_one_letter_code_can
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
2004-02-06
SPRSDE
RIBONUCLEASE INHIBITOR-ANGIOGENIN COMPLEX
ANGIOGENIN
3D SOLUTION STRUCTURE OF HUMAN ANGIOGENIN DETERMINED BY 1H, 15N NMR SPECTROSCOPY, 30 STRUCTURES
CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN VARIANT K40Q
CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN
CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN VARIANT H13A.
GUEST-HOST CROSSTALK IN AN ANGIOGENIN/RNASE A CHIMERIC PROTEIN
CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN IN COMPLEX WITH FAB FRAGMENT OF ITS MONOCLONAL ANTIBODY MAB 26-2F
BINDING OF PHOSPHATE AND PYROPHOSPHATE IONS AT THE ACTIVE SITE OF HUMAN ANGIOGENIN AS REVEALED BY X-RAY CRYSTALLOGRAPHY
BINDING OF PHOSPHATE AND PYROPHOSPHATE IONS AT THE ACTIVE SITE OF HUMAN ANGIOGENIN AS REVEALED BY X-RAY CRYSTALLOGRAPHY
BINDING OF PHOSPHATE AND PYROPHOSPHATE IONS AT THE ACTIVE SITE OF HUMAN ANGIOGENIN AS REVEALED BY X-RAY CRYSTALLOGRAPHY
CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN VARIANT D116H
CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN VARIANT Q117G
CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN DOUBLE VARIANTI119A/F120A
CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN VARIANT DES(121-123)
CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN VARIANT T80A
ARH-II, AN ANGIOGENIN/RNASE A CHIMERA
CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN OF THE MET(-1) FORM
PDBE
Y
PDBE
2003-09-04
REL
HOH
water
ENGINEERED MUTATION IN CHAIN A, ASP 68 THR (RESIDUE
NUMBERING BASED ON SWISSPROT SEQUENCE DATABASE). THE
RESIDUE NUMBER IN THE COORDINATES IS 44.
ANGIOGENIC RIBONUCLEASE THAT BINDS TO ACTIN ON THE
SURFACE OF ENDOTHELIAL CELLS
1B1I
PDB ENTRY 1B1I
PDB
experimental model
HOH
2001
2
HOH
HOH
2001
A
HOH
2002
2
HOH
HOH
2002
A
HOH
2003
2
HOH
HOH
2003
A
HOH
2004
2
HOH
HOH
2004
A
HOH
2005
2
HOH
HOH
2005
A
HOH
2006
2
HOH
HOH
2006
A
HOH
2007
2
HOH
HOH
2007
A
HOH
2008
2
HOH
HOH
2008
A
HOH
2009
2
HOH
HOH
2009
A
HOH
2010
2
HOH
HOH
2010
A
HOH
2011
2
HOH
HOH
2011
A
HOH
2012
2
HOH
HOH
2012
A
HOH
2013
2
HOH
HOH
2013
A
HOH
2014
2
HOH
HOH
2014
A
HOH
2015
2
HOH
HOH
2015
A
HOH
2016
2
HOH
HOH
2016
A
HOH
2017
2
HOH
HOH
2017
A
HOH
2018
2
HOH
HOH
2018
A
HOH
2019
2
HOH
HOH
2019
A
HOH
2020
2
HOH
HOH
2020
A
HOH
2021
2
HOH
HOH
2021
A
HOH
2022
2
HOH
HOH
2022
A
HOH
2023
2
HOH
HOH
2023
A
HOH
2024
2
HOH
HOH
2024
A
HOH
2025
2
HOH
HOH
2025
A
HOH
2026
2
HOH
HOH
2026
A
HOH
2027
2
HOH
HOH
2027
A
HOH
2028
2
HOH
HOH
2028
A
HOH
2029
2
HOH
HOH
2029
A
HOH
2030
2
HOH
HOH
2030
A
HOH
2031
2
HOH
HOH
2031
A
HOH
2032
2
HOH
HOH
2032
A
HOH
2033
2
HOH
HOH
2033
A
HOH
2034
2
HOH
HOH
2034
A
HOH
2035
2
HOH
HOH
2035
A
HOH
2036
2
HOH
HOH
2036
A
HOH
2037
2
HOH
HOH
2037
A
HOH
2038
2
HOH
HOH
2038
A
HOH
2039
2
HOH
HOH
2039
A
HOH
2040
2
HOH
HOH
2040
A
HOH
2041
2
HOH
HOH
2041
A
HOH
2042
2
HOH
HOH
2042
A
HOH
2043
2
HOH
HOH
2043
A
HOH
2044
2
HOH
HOH
2044
A
HOH
2045
2
HOH
HOH
2045
A
HOH
2046
2
HOH
HOH
2046
A
HOH
2047
2
HOH
HOH
2047
A
HOH
2048
2
HOH
HOH
2048
A
HOH
2049
2
HOH
HOH
2049
A
HOH
2050
2
HOH
HOH
2050
A
HOH
2051
2
HOH
HOH
2051
A
HOH
2052
2
HOH
HOH
2052
A
HOH
2053
2
HOH
HOH
2053
A
HOH
2054
2
HOH
HOH
2054
A
HOH
2055
2
HOH
HOH
2055
A
HOH
2056
2
HOH
HOH
2056
A
HOH
2057
2
HOH
HOH
2057
A
HOH
2058
2
HOH
HOH
2058
A
HOH
2059
2
HOH
HOH
2059
A
HOH
2060
2
HOH
HOH
2060
A
HOH
2061
2
HOH
HOH
2061
A
HOH
2062
2
HOH
HOH
2062
A
HOH
2063
2
HOH
HOH
2063
A
HOH
2064
2
HOH
HOH
2064
A
HOH
2065
2
HOH
HOH
2065
A
HOH
2066
2
HOH
HOH
2066
A
HOH
2067
2
HOH
HOH
2067
A
HOH
2068
2
HOH
HOH
2068
A
HOH
2069
2
HOH
HOH
2069
A
HOH
2070
2
HOH
HOH
2070
A
HOH
2071
2
HOH
HOH
2071
A
HOH
2072
2
HOH
HOH
2072
A
HOH
2073
2
HOH
HOH
2073
A
HOH
2074
2
HOH
HOH
2074
A
HOH
2075
2
HOH
HOH
2075
A
HOH
2076
2
HOH
HOH
2076
A
HOH
2077
2
HOH
HOH
2077
A
HOH
2078
2
HOH
HOH
2078
A
n
1
1
A
n
2
2
A
ASN
3
n
3
ASN
3
A
SER
4
n
4
SER
4
A
ARG
5
n
5
ARG
5
A
TYR
6
n
6
TYR
6
A
THR
7
n
7
THR
7
A
HIS
8
n
8
HIS
8
A
PHE
9
n
9
PHE
9
A
LEU
10
n
10
LEU
10
A
THR
11
n
11
THR
11
A
GLN
12
n
12
GLN
12
A
HIS
13
n
13
HIS
13
A
TYR
14
n
14
TYR
14
A
ASP
15
n
15
ASP
15
A
ALA
16
n
16
ALA
16
A
LYS
17
n
17
LYS
17
A
PRO
18
n
18
PRO
18
A
GLN
19
n
19
GLN
19
A
GLY
20
n
20
GLY
20
A
ARG
21
n
21
ARG
21
A
ASP
22
n
22
ASP
22
A
ASP
23
n
23
ASP
23
A
ARG
24
n
24
ARG
24
A
TYR
25
n
25
TYR
25
A
CYS
26
n
26
CYS
26
A
GLU
27
n
27
GLU
27
A
SER
28
n
28
SER
28
A
ILE
29
n
29
ILE
29
A
MET
30
n
30
MET
30
A
ARG
31
n
31
ARG
31
A
ARG
32
n
32
ARG
32
A
ARG
33
n
33
ARG
33
A
GLY
34
n
34
GLY
34
A
LEU
35
n
35
LEU
35
A
THR
36
n
36
THR
36
A
SER
37
n
37
SER
37
A
PRO
38
n
38
PRO
38
A
CYS
39
n
39
CYS
39
A
LYS
40
n
40
LYS
40
A
ASP
41
n
41
ASP
41
A
ILE
42
n
42
ILE
42
A
ASN
43
n
43
ASN
43
A
ASP
44
n
44
ASP
44
A
PHE
45
n
45
PHE
45
A
ILE
46
n
46
ILE
46
A
HIS
47
n
47
HIS
47
A
GLY
48
n
48
GLY
48
A
ASN
49
n
49
ASN
49
A
LYS
50
n
50
LYS
50
A
ARG
51
n
51
ARG
51
A
SER
52
n
52
SER
52
A
ILE
53
n
53
ILE
53
A
LYS
54
n
54
LYS
54
A
ALA
55
n
55
ALA
55
A
ILE
56
n
56
ILE
56
A
CYS
57
n
57
CYS
57
A
GLU
58
n
58
GLU
58
A
ASN
59
n
59
ASN
59
A
LYS
60
n
60
LYS
60
A
ASN
61
n
61
ASN
61
A
GLY
62
n
62
GLY
62
A
ASN
63
n
63
ASN
63
A
PRO
64
n
64
PRO
64
A
HIS
65
n
65
HIS
65
A
ARG
66
n
66
ARG
66
A
GLU
67
n
67
GLU
67
A
ASN
68
n
68
ASN
68
A
LEU
69
n
69
LEU
69
A
ARG
70
n
70
ARG
70
A
ILE
71
n
71
ILE
71
A
SER
72
n
72
SER
72
A
LYS
73
n
73
LYS
73
A
SER
74
n
74
SER
74
A
SER
75
n
75
SER
75
A
PHE
76
n
76
PHE
76
A
GLN
77
n
77
GLN
77
A
VAL
78
n
78
VAL
78
A
THR
79
n
79
THR
79
A
THR
80
n
80
THR
80
A
CYS
81
n
81
CYS
81
A
LYS
82
n
82
LYS
82
A
LEU
83
n
83
LEU
83
A
HIS
84
n
84
HIS
84
A
GLY
85
n
85
GLY
85
A
GLY
86
n
86
GLY
86
A
SER
87
n
87
SER
87
A
PRO
88
n
88
PRO
88
A
TRP
89
n
89
TRP
89
A
PRO
90
n
90
PRO
90
A
PRO
91
n
91
PRO
91
A
CYS
92
n
92
CYS
92
A
GLN
93
n
93
GLN
93
A
TYR
94
n
94
TYR
94
A
ARG
95
n
95
ARG
95
A
ALA
96
n
96
ALA
96
A
THR
97
n
97
THR
97
A
ALA
98
n
98
ALA
98
A
GLY
99
n
99
GLY
99
A
PHE
100
n
100
PHE
100
A
ARG
101
n
101
ARG
101
A
ASN
102
n
102
ASN
102
A
VAL
103
n
103
VAL
103
A
VAL
104
n
104
VAL
104
A
VAL
105
n
105
VAL
105
A
ALA
106
n
106
ALA
106
A
CYS
107
n
107
CYS
107
A
GLU
108
n
108
GLU
108
A
ASN
109
n
109
ASN
109
A
GLY
110
n
110
GLY
110
A
LEU
111
n
111
LEU
111
A
PRO
112
n
112
PRO
112
A
VAL
113
n
113
VAL
113
A
HIS
114
n
114
HIS
114
A
LEU
115
n
115
LEU
115
A
ASP
116
n
116
ASP
116
A
GLN
117
n
117
GLN
117
A
n
118
118
A
n
119
119
A
n
120
120
A
n
121
121
A
n
122
122
A
n
123
123
A
author_and_software_defined_assembly
PQS
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
45
A
N
PHE
45
A
O
THR
79
A
O
THR
79
A
N
HIS
84
A
N
HIS
84
A
O
GLN
93
A
O
GLN
93
A
N
HIS
65
A
N
HIS
65
A
O
LEU
69
A
O
LEU
69
A
N
ARG
70
A
N
ARG
70
A
O
VAL
105
A
O
VAL
105
A
N
GLU
108
A
N
GLU
108
A
O
LEU
111
A
O
LEU
111
1
A
HOH
2060
B
HOH
1
A
N
ASN
3
A
N
ASN
3
1
Y
1
A
CB
ASN
3
A
CB
ASN
3
1
Y
1
A
CG
ASN
3
A
CG
ASN
3
1
Y
1
A
OD1
ASN
3
A
OD1
ASN
3
1
Y
1
A
ND2
ASN
3
A
ND2
ASN
3
1
Y
1
A
CG
LYS
17
A
CG
LYS
17
1
Y
1
A
CD
LYS
17
A
CD
LYS
17
1
Y
1
A
CE
LYS
17
A
CE
LYS
17
1
Y
1
A
NZ
LYS
17
A
NZ
LYS
17
1
Y
1
A
CD
ARG
24
A
CD
ARG
24
1
Y
1
A
NE
ARG
24
A
NE
ARG
24
1
Y
1
A
CZ
ARG
24
A
CZ
ARG
24
1
Y
1
A
NH1
ARG
24
A
NH1
ARG
24
1
Y
1
A
NH2
ARG
24
A
NH2
ARG
24
1
Y
1
A
CZ
ARG
31
A
CZ
ARG
31
1
Y
1
A
NH1
ARG
31
A
NH1
ARG
31
1
Y
1
A
NH2
ARG
31
A
NH2
ARG
31
1
Y
1
A
CE
LYS
54
A
CE
LYS
54
1
Y
1
A
NZ
LYS
54
A
NZ
LYS
54
1
Y
1
A
OE1
GLU
58
A
OE1
GLU
58
1
Y
1
A
OE2
GLU
58
A
OE2
GLU
58
1
Y
1
A
OD1
ASN
59
A
OD1
ASN
59
1
Y
1
A
ND2
ASN
59
A
ND2
ASN
59
1
Y
1
A
CD
LYS
60
A
CD
LYS
60
1
Y
1
A
CE
LYS
60
A
CE
LYS
60
1
Y
1
A
NZ
LYS
60
A
NZ
LYS
60
1
Y
1
A
CG
ARG
66
A
CG
ARG
66
1
Y
1
A
CD
ARG
66
A
CD
ARG
66
1
Y
1
A
NE
ARG
66
A
NE
ARG
66
1
Y
1
A
CZ
ARG
66
A
CZ
ARG
66
1
Y
1
A
NH1
ARG
66
A
NH1
ARG
66
1
Y
1
A
NH2
ARG
66
A
NH2
ARG
66
1
Y
1
A
CG
GLU
67
A
CG
GLU
67
1
Y
1
A
CD
GLU
67
A
CD
GLU
67
1
Y
1
A
OE1
GLU
67
A
OE1
GLU
67
1
Y
1
A
OE2
GLU
67
A
OE2
GLU
67
1
Y
1
A
OD1
ASN
68
A
OD1
ASN
68
1
Y
1
A
ND2
ASN
68
A
ND2
ASN
68
1
Y
1
A
CE
LYS
82
A
CE
LYS
82
1
Y
1
A
NZ
LYS
82
A
NZ
LYS
82
1
Y
1
A
CD
GLN
93
A
CD
GLN
93
1
Y
1
A
OE1
GLN
93
A
OE1
GLN
93
1
Y
1
A
NE2
GLN
93
A
NE2
GLN
93
1
Y
1
A
CZ
ARG
95
A
CZ
ARG
95
1
Y
1
A
NH1
ARG
95
A
NH1
ARG
95
1
Y
1
A
NH2
ARG
95
A
NH2
ARG
95
1
Y
1
A
C
GLN
117
A
C
GLN
117
1
Y
1
A
O
GLN
117
A
O
GLN
117
1
Y
1
A
PCA
1
A
PCA
1
1
Y
1
A
ASP
2
A
ASP
2
1
Y
1
A
SER
118
A
SER
118
1
Y
1
A
ILE
119
A
ILE
119
1
Y
1
A
PHE
120
A
PHE
120
1
Y
1
A
ARG
121
A
ARG
121
1
Y
1
A
ARG
122
A
ARG
122
1
Y
1
A
PRO
123
A
PRO
123
1
Y
1
A
GLN
19
-91.09
-79.78
1
A
ARG
66
51.02
-148.58
23.39
-0.09000
0.00000
0.00000
0.78000
0.00000
-0.69000
0.942
0.922
0.223
0.199
0.200
1.70
44.28
704
13235
5.100
97.2
1.806
0.061
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.117
0.109
0.80
0.80
1.40
PDB ENTRY 1B1I
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.70
44.28
78
952
0
0
874
0.010
0.021
981
1.279
1.926
1321
5.691
5.000
116
0.098
0.200
132
0.004
0.020
767
0.187
0.200
324
0.131
0.200
55
0.137
0.200
19
0.060
0.200
7
0.943
1.500
583
1.789
2.000
947
2.369
3.000
398
3.914
4.500
374
0.2200
0.2060
1.79
96
1926
10
1.700
40.000
1UN3
13959
0.10400
1
10.8000
7.700
97.2
0.37700
1.70
1.76
9.600
1
99.7
refinement
REFMAC
5.1.19
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN VARIANT T44D
1
N
N
2
N
N
A
SER
4
A
SER
4
HELX_P
A
TYR
14
A
TYR
14
1
1
11
A
ASP
22
A
ASP
22
HELX_P
A
ARG
33
A
ARG
33
1
2
12
A
ASN
49
A
ASN
49
HELX_P
A
ALA
55
A
ALA
55
1
3
7
A
ILE
56
A
ILE
56
HELX_P
A
GLU
58
A
GLU
58
5
4
3
disulf
2.031
A
CYS
26
A
SG
CYS
26
1_555
A
CYS
81
A
SG
CYS
81
1_555
disulf
1.989
A
CYS
39
A
SG
CYS
39
1_555
A
CYS
92
A
SG
CYS
92
1_555
disulf
2.000
A
CYS
57
A
SG
CYS
57
1_555
A
CYS
107
A
SG
CYS
107
1_555
HYDROLASE
RIBONUCLEASE, HYDROLASE, NUCLEASE, ENDONUCLEASE, ANGIOGENESIS, PYRROLIDONE CARBOXYLIC ACID
A
SER
37
A
SER
37
1
A
PRO
38
A
PRO
38
2.60
A
PRO
90
A
PRO
90
1
A
PRO
91
A
PRO
91
6.35
ANGI_HUMAN
UNP
1
P03950
25
147
1UN3
1
123
P03950
A
1
1
123
1
THR
engineered mutation
ASP
44
1UN3
A
P03950
UNP
68
44
3
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
42
A
ILE
42
A
ILE
46
A
ILE
46
A
PHE
76
A
PHE
76
A
HIS
84
A
HIS
84
A
GLN
93
A
GLN
93
A
ARG
101
A
ARG
101
A
GLY
62
A
GLY
62
A
HIS
65
A
HIS
65
A
LEU
69
A
LEU
69
A
SER
72
A
SER
72
A
VAL
104
A
VAL
104
A
GLU
108
A
GLU
108
A
LEU
111
A
LEU
111
A
LEU
115
A
LEU
115
18
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