0.012740 0.000000 0.000000 0.000000 0.012740 0.000000 0.000000 0.000000 0.012740 0.00000 0.00000 0.00000 Yadav, M.K. Redman, J.E. Alvarez-Gutierrez, J.M. Zhang, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 48 90.00 90.00 90.00 78.490 78.490 78.490 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H5 I 204.008 iodobenzene non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 44 9723 10.1021/BI050742A 16008357 Structure-Based Engineering of Internal Cavities in Coiled-Coil Peptides 2005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 114.0 1 2003-02-15 SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 DIMER ASYMMETRIC UNIT OF FOUR HELIX BUNDLE MUTATION LEU9ALA 4030.757 GENERAL CONTROL PROTEIN GCN4 YES 2 syn polymer 35.453 CHLORIDE ION 1 syn non-polymer 204.008 iodobenzene 1 syn non-polymer 18.015 water 10 nat water GCN4 LEUCINE ZIPPER, AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN, PLI no yes (ACE)RMKQIEDKAEEILSKLYHIENELARIKKLLGER XRMKQIEDKAEEILSKLYHIENELARIKKLLGER A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.5 50 VAPOR DIFFUSION, HANGING DROP 7.00 HANGING DROP, RESERVOIR: 10%W/V PEG 6K, 2 M NACL, PH 7.0 database_PDB_rev database_PDB_rev_record exptl_crystal_grow pdbx_database_proc pdbx_database_status chem_comp entity pdbx_database_status pdbx_entity_nonpoly repository Initial release Version format compliance Version format compliance Data collection Experimental preparation Other Derived calculations Other Structure summary 1 0 2004-10-13 1 1 2011-05-08 1 2 2011-07-13 1 3 2019-05-08 1 4 2021-01-13 _exptl_crystal_grow.method _pdbx_database_status.recvd_author_approval _chem_comp.name _entity.pdbx_description _pdbx_database_status.status_code_sf _pdbx_entity_nonpoly.name GCN4 LEUCINE ZIPPER CORE MUTANT P-LI GCN4 LEUCINE ZIPPER CORE MUTANT P-LI STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES HELIX CAPPING IN THE GCN4 LEUCINE ZIPPER GCN4 LEUCINE ZIPPER COMPLEXED WITH SPECIFIC ATF/CREB SITE DEOXYRIBONUCLEIC ACID ATOMIC STRUCTURE OF THE ECTODOMAIN FROM HIV -1 GP41 THE STRUCTURE OF AN HIV-1 SPECIFIC CELL ENTRY INHIBITOR INCOMPLEX WITH THE HIV-1 GP41 TRIMERIC CORE HUMAN VIMENTIN COIL 2B FRAGMENT LINKED TO GCN4 LEUCINE ZIPPER (Z2B) CRYSTAL STRUCTURE OF C14LINKMID/IQN17: A CROSS-LINKED INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 HYDROPHOBIC POCKET GLYTM1BZIP: A CHIMERIC PEPTIDE MODEL OF THE N-TERMINUS OF ARAT SHORT ALPHA TROPOMYOSIN WITH THE N-TERMINUS ENCODED BYEXON 1B COILED COIL TRIMER GCN4-PVLS SER AT BURIED D POSITION GCN4-PVLT COILED-COIL TRIMER WITH THREONINE AT THE D(12)POSITION GCN4-PVTL COILED-COIL TRIMER WITH THREONINE AT THE A(16)POSITION GCN4-PVSL COILED-COIL TRIMER WITH SERINE AT THE A(16)POSITION CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF STRIATEDMUSCLE ALPHA-TROPOMYOSIN AT 2.7 ANGSTROM RESOLUTION PLACEMENT OF THE STRUCTURAL PROTEINS IN SINDBIS VIRUS CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA VISUALIZING AN UNSTABLE COILED COIL: THE CRYSTAL STRUCTUREOF AN N-TERMINAL SEGMENT OF THE SCALLOP MYOSIN ROD CRYSTAL STRUCTURE OF GCN4-PIQ, A TRIMERIC COILED COIL WITH BURIED POLAR RESIDUES GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A TRIGONAL AUTOMATICSOLUTION ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TETRAGONAL AUTOMATIC SOLUTION ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TRIGONAL FORM ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TETRAGONAL FORM GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A COMPLEXED WITH BENZENE TMZIP: A CHIMERIC PEPTIDE MODEL OF THE N- TERMINUS OF ALPHA TROPOMYOSIN, NMR, 15 STRUCTURES AN ANTI-PARALLEL FOUR HELIX BUNDLE ( ACETIMIDE MODIFICATION). AN ANTI-PARALLEL FOUR HELIX BUNDLE. ABA DOES NOT AFFECT TOPOLOGY OF PLI. AN ANTI-PARALLEL FOUR HELIX BUNDLE AN ANTI-PARALLEL FOUR HELIX BUNDLE AN ANTI-PARALLEL TO PARALLEL SWITCH. GCN4 (BASIC REGION, LEUCINE ZIPPER) COMPLEX WITH AP-1 DEOXYRIBONUCLEIC ACID GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE DIMERIC STATE GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE TRIMERIC STATE GCN4-LEUCINE ZIPPER CORE MUTANT ASN16LYS IN THE DIMERIC STATE GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE DIMERIC STATE GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE TRIMERIC STATE LEUCINE ZIPPER MONOMER (NMR, 20 STRUCTURES) GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DEOXYRIBONUCLEIC ACID GCN4 LEUCINE ZIPPER PDBE Y PDBE 2003-09-15 REL REL CL CHLORIDE ION PIH iodobenzene HOH water BASED ON SEQUENCE FROM SACCHAROMYCES CEREVISIAE (BAKER'S YEAST) 4932 BAKER'S YEAST SACCHAROMYCES CEREVISIAE sample ENGINEERED RESIDUE VAL 257 ALA, CHAINS A AND B CL 1033 2 CL CL 1033 A PIH 1034 3 PIH PIH 1034 A HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2001 4 HOH HOH 2001 B HOH 2002 4 HOH HOH 2002 B HOH 2003 4 HOH HOH 2003 B HOH 2004 4 HOH HOH 2004 B n 1 -1 A n 2 1 A MET 2 n 3 MET 2 A LYS 3 n 4 LYS 3 A GLN 4 n 5 GLN 4 A ILE 5 n 6 ILE 5 A GLU 6 n 7 GLU 6 A ASP 7 n 8 ASP 7 A LYS 8 n 9 LYS 8 A ALA 9 n 10 ALA 9 A GLU 10 n 11 GLU 10 A GLU 11 n 12 GLU 11 A ILE 12 n 13 ILE 12 A LEU 13 n 14 LEU 13 A SER 14 n 15 SER 14 A LYS 15 n 16 LYS 15 A LEU 16 n 17 LEU 16 A TYR 17 n 18 TYR 17 A HIS 18 n 19 HIS 18 A ILE 19 n 20 ILE 19 A GLU 20 n 21 GLU 20 A ASN 21 n 22 ASN 21 A GLU 22 n 23 GLU 22 A LEU 23 n 24 LEU 23 A ALA 24 n 25 ALA 24 A ARG 25 n 26 ARG 25 A ILE 26 n 27 ILE 26 A LYS 27 n 28 LYS 27 A LYS 28 n 29 LYS 28 A LEU 29 n 30 LEU 29 A LEU 30 n 31 LEU 30 A GLY 31 n 32 GLY 31 A GLU 32 n 33 GLU 32 A n 34 33 A n 1 -1 B n 2 1 B MET 2 n 3 MET 2 B LYS 3 n 4 LYS 3 B GLN 4 n 5 GLN 4 B ILE 5 n 6 ILE 5 B GLU 6 n 7 GLU 6 B ASP 7 n 8 ASP 7 B LYS 8 n 9 LYS 8 B ALA 9 n 10 ALA 9 B GLU 10 n 11 GLU 10 B GLU 11 n 12 GLU 11 B ILE 12 n 13 ILE 12 B LEU 13 n 14 LEU 13 B SER 14 n 15 SER 14 B LYS 15 n 16 LYS 15 B LEU 16 n 17 LEU 16 B TYR 17 n 18 TYR 17 B HIS 18 n 19 HIS 18 B ILE 19 n 20 ILE 19 B GLU 20 n 21 GLU 20 B ASN 21 n 22 ASN 21 B GLU 22 n 23 GLU 22 B LEU 23 n 24 LEU 23 B ALA 24 n 25 ALA 24 B ARG 25 n 26 ARG 25 B ILE 26 n 27 ILE 26 B LYS 27 n 28 LYS 27 B LYS 28 n 29 LYS 28 B LEU 29 n 30 LEU 29 B LEU 30 n 31 LEU 30 B GLY 31 n 32 GLY 31 B GLU 32 n 33 GLU 32 B n 34 33 B author_and_software_defined_assembly PQS 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 24_555 -z+3/4,-y+3/4,-x+3/4 crystal symmetry operation 58.8675000000 58.8675000000 58.8675000000 1 A ACE -1 A ACE 1 1 Y 1 A ARG 1 A ARG 2 1 Y 1 A ARG 33 A ARG 34 1 Y 1 B ACE -1 B ACE 1 1 Y 1 B ARG 1 B ARG 2 1 Y 1 B ARG 33 B ARG 34 1 Y 1 A B O O HOH HOH 2002 2001 1.96 1 B B O O HOH HOH 2001 2002 1.98 1 -10.30 1.70 111.00 100.70 A A A CB CG CD2 LEU LEU LEU 23 23 23 N 1 5.99 0.50 120.30 126.29 A A A NE CZ NH1 ARG ARG ARG 25 25 25 N 1 7.45 1.20 123.30 130.75 B B B OE1 CD OE2 GLU GLU GLU 6 6 6 N 1 7.13 0.90 118.30 125.43 B B B CB CG OD1 ASP ASP ASP 7 7 7 N 1 A A CD CE LYS LYS 8 8 0.157 0.025 1.508 1.665 N 1 A A CA CB SER SER 14 14 0.091 0.015 1.525 1.616 N 1 A A CG CD2 TYR TYR 17 17 -0.122 0.013 1.387 1.265 N 1 A A CD OE2 GLU GLU 20 20 0.074 0.011 1.252 1.326 N 1 A A CD OE2 GLU GLU 22 22 0.068 0.011 1.252 1.320 N 1 A A CG CD ARG ARG 25 25 0.182 0.025 1.515 1.697 N 1 A A NE CZ ARG ARG 25 25 0.096 0.013 1.326 1.422 N 1 B B CD OE1 GLU GLU 6 6 0.069 0.011 1.252 1.321 N 1 B B CD OE2 GLU GLU 10 10 -0.110 0.011 1.252 1.142 N 1 B B CA CB ILE ILE 12 12 -0.160 0.023 1.544 1.384 N 1 B B N CA LEU LEU 13 13 0.213 0.020 1.459 1.672 N 1 B B CA C LEU LEU 13 13 -0.176 0.026 1.525 1.349 N 1 B B CB CG TYR TYR 17 17 0.118 0.015 1.512 1.630 N 1 B B CG CD1 TYR TYR 17 17 -0.089 0.013 1.387 1.298 N 1 B B CG CD GLU GLU 22 22 0.106 0.015 1.515 1.621 N 1 B B CD CE LYS LYS 28 28 0.165 0.025 1.508 1.673 N 1 A LEU 29 -45.90 -18.86 46.672 0.28305 0.26137 0.26238 2.07 55.90 245 5176 4.5 99.83 5.280 0.149 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.230 0.191 2.07 55.90 10 532 8 0 514 2.070 35.100 1UO5 5435 2.000 0.03000 1 14.6000 7.400 100.0 0.20500 2.07 2.14 3.200 1 6.83 100.0 refinement REFMAC data reduction CrystalClear (MSC/RIGAKU) data scaling SCALA phasing MOLREP GENERAL CONTROL PROTEIN GCN4 Structure Based Engineering of Internal Molecular Surfaces Of Four Helix Bundles 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N A MET 2 A MET 3 HELX_P A LEU 30 A LEU 31 1 1 29 B MET 2 B MET 3 HELX_P B GLU 32 B GLU 33 1 2 31 FOUR HELIX BUNDLE FOUR HELIX BUNDLE, CAVITY, IODOBENZENE 1UO5 PDB 1 1UO5 GCN4_YEAST UNP 1 P03069 -1 -1 1UO5 -1 -1 1UO5 A 1 1 1 249 281 1UO5 1 33 P03069 A 2 2 34 -1 -1 1UO5 -1 -1 1UO5 B 1 1 1 249 281 1UO5 1 33 P03069 B 2 2 34 1 LEU conflict ILE 5 1UO5 A P03069 UNP 253 6 1 VAL engineered mutation ALA 9 1UO5 A P03069 UNP 257 10 1 LEU conflict ILE 12 1UO5 A P03069 UNP 260 13 1 ASN conflict LEU 16 1UO5 A P03069 UNP 264 17 1 LEU conflict ILE 19 1UO5 A P03069 UNP 267 20 1 VAL conflict LEU 23 1UO5 A P03069 UNP 271 24 1 LEU conflict ILE 26 1UO5 A P03069 UNP 274 27 1 VAL conflict LEU 30 1UO5 A P03069 UNP 278 31 3 LEU conflict ILE 5 1UO5 B P03069 UNP 253 6 3 VAL engineered mutation ALA 9 1UO5 B P03069 UNP 257 10 3 LEU conflict ILE 12 1UO5 B P03069 UNP 260 13 3 ASN conflict LEU 16 1UO5 B P03069 UNP 264 17 3 LEU conflict ILE 19 1UO5 B P03069 UNP 267 20 3 VAL conflict LEU 23 1UO5 B P03069 UNP 271 24 3 LEU conflict ILE 26 1UO5 B P03069 UNP 274 27 3 VAL conflict LEU 30 1UO5 B P03069 UNP 278 31 BINDING SITE FOR RESIDUE CL A1033 Software 4 BINDING SITE FOR RESIDUE PIH A1034 Software 2 A GLU 10 A GLU 11 4 1_555 B LYS 8 B LYS 9 4 1_555 B HIS 18 B HIS 19 4 1_555 B ASN 21 B ASN 22 4 1_555 A ILE 5 A ILE 6 2 1_555 A ILE 12 A ILE 13 2 1_555 213 P 41 3 2