0.012740
0.000000
0.000000
0.000000
0.012740
0.000000
0.000000
0.000000
0.012740
0.00000
0.00000
0.00000
Yadav, M.K.
Redman, J.E.
Alvarez-Gutierrez, J.M.
Zhang, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.00
90.00
90.00
78.490
78.490
78.490
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H5 I
204.008
iodobenzene
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
44
9723
10.1021/BI050742A
16008357
Structure-Based Engineering of Internal Cavities in Coiled-Coil Peptides
2005
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
114.0
1
2003-02-15
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
DIMER ASYMMETRIC UNIT OF FOUR HELIX BUNDLE MUTATION LEU9ALA
4030.757
GENERAL CONTROL PROTEIN GCN4
YES
2
syn
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
204.008
iodobenzene
1
syn
non-polymer
18.015
water
10
nat
water
GCN4 LEUCINE ZIPPER, AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN, PLI
no
yes
(ACE)RMKQIEDKAEEILSKLYHIENELARIKKLLGER
XRMKQIEDKAEEILSKLYHIENELARIKKLLGER
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
2.5
50
VAPOR DIFFUSION, HANGING DROP
7.00
HANGING DROP, RESERVOIR: 10%W/V PEG 6K, 2 M NACL, PH 7.0
database_PDB_rev
database_PDB_rev_record
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
chem_comp
entity
pdbx_database_status
pdbx_entity_nonpoly
repository
Initial release
Version format compliance
Version format compliance
Data collection
Experimental preparation
Other
Derived calculations
Other
Structure summary
1
0
2004-10-13
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-05-08
1
4
2021-01-13
_exptl_crystal_grow.method
_pdbx_database_status.recvd_author_approval
_chem_comp.name
_entity.pdbx_description
_pdbx_database_status.status_code_sf
_pdbx_entity_nonpoly.name
GCN4 LEUCINE ZIPPER CORE MUTANT P-LI
GCN4 LEUCINE ZIPPER CORE MUTANT P-LI
STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR HELIX BUNDLES
HELIX CAPPING IN THE GCN4 LEUCINE ZIPPER
GCN4 LEUCINE ZIPPER COMPLEXED WITH SPECIFIC ATF/CREB SITE DEOXYRIBONUCLEIC ACID
ATOMIC STRUCTURE OF THE ECTODOMAIN FROM HIV -1 GP41
THE STRUCTURE OF AN HIV-1 SPECIFIC CELL ENTRY INHIBITOR INCOMPLEX WITH THE HIV-1 GP41 TRIMERIC CORE
HUMAN VIMENTIN COIL 2B FRAGMENT LINKED TO GCN4 LEUCINE ZIPPER (Z2B)
CRYSTAL STRUCTURE OF C14LINKMID/IQN17: A CROSS-LINKED INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 HYDROPHOBIC POCKET
GLYTM1BZIP: A CHIMERIC PEPTIDE MODEL OF THE N-TERMINUS OF ARAT SHORT ALPHA TROPOMYOSIN WITH THE N-TERMINUS ENCODED BYEXON 1B
COILED COIL TRIMER GCN4-PVLS SER AT BURIED D POSITION
GCN4-PVLT COILED-COIL TRIMER WITH THREONINE AT THE D(12)POSITION
GCN4-PVTL COILED-COIL TRIMER WITH THREONINE AT THE A(16)POSITION
GCN4-PVSL COILED-COIL TRIMER WITH SERINE AT THE A(16)POSITION
CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF STRIATEDMUSCLE ALPHA-TROPOMYOSIN AT 2.7 ANGSTROM RESOLUTION
PLACEMENT OF THE STRUCTURAL PROTEINS IN SINDBIS VIRUS
CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA
VISUALIZING AN UNSTABLE COILED COIL: THE CRYSTAL STRUCTUREOF AN N-TERMINAL SEGMENT OF THE SCALLOP MYOSIN ROD
CRYSTAL STRUCTURE OF GCN4-PIQ, A TRIMERIC COILED COIL WITH BURIED POLAR RESIDUES
GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A TRIGONAL AUTOMATICSOLUTION
ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TETRAGONAL AUTOMATIC SOLUTION
ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TRIGONAL FORM
ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A TETRAGONAL FORM
GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A COMPLEXED WITH BENZENE
TMZIP: A CHIMERIC PEPTIDE MODEL OF THE N- TERMINUS OF ALPHA TROPOMYOSIN, NMR, 15 STRUCTURES
AN ANTI-PARALLEL FOUR HELIX BUNDLE ( ACETIMIDE MODIFICATION).
AN ANTI-PARALLEL FOUR HELIX BUNDLE.
ABA DOES NOT AFFECT TOPOLOGY OF PLI.
AN ANTI-PARALLEL FOUR HELIX BUNDLE
AN ANTI-PARALLEL FOUR HELIX BUNDLE
AN ANTI-PARALLEL TO PARALLEL SWITCH.
GCN4 (BASIC REGION, LEUCINE ZIPPER) COMPLEX WITH AP-1 DEOXYRIBONUCLEIC ACID
GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE DIMERIC STATE
GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE TRIMERIC STATE
GCN4-LEUCINE ZIPPER CORE MUTANT ASN16LYS IN THE DIMERIC STATE
GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE DIMERIC STATE
GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE TRIMERIC STATE
LEUCINE ZIPPER MONOMER (NMR, 20 STRUCTURES)
GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DEOXYRIBONUCLEIC ACID
GCN4 LEUCINE ZIPPER
PDBE
Y
PDBE
2003-09-15
REL
REL
CL
CHLORIDE ION
PIH
iodobenzene
HOH
water
BASED ON SEQUENCE FROM SACCHAROMYCES CEREVISIAE (BAKER'S YEAST)
4932
BAKER'S YEAST
SACCHAROMYCES CEREVISIAE
sample
ENGINEERED RESIDUE VAL 257 ALA, CHAINS A AND B
CL
1033
2
CL
CL
1033
A
PIH
1034
3
PIH
PIH
1034
A
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2001
4
HOH
HOH
2001
B
HOH
2002
4
HOH
HOH
2002
B
HOH
2003
4
HOH
HOH
2003
B
HOH
2004
4
HOH
HOH
2004
B
n
1
-1
A
n
2
1
A
MET
2
n
3
MET
2
A
LYS
3
n
4
LYS
3
A
GLN
4
n
5
GLN
4
A
ILE
5
n
6
ILE
5
A
GLU
6
n
7
GLU
6
A
ASP
7
n
8
ASP
7
A
LYS
8
n
9
LYS
8
A
ALA
9
n
10
ALA
9
A
GLU
10
n
11
GLU
10
A
GLU
11
n
12
GLU
11
A
ILE
12
n
13
ILE
12
A
LEU
13
n
14
LEU
13
A
SER
14
n
15
SER
14
A
LYS
15
n
16
LYS
15
A
LEU
16
n
17
LEU
16
A
TYR
17
n
18
TYR
17
A
HIS
18
n
19
HIS
18
A
ILE
19
n
20
ILE
19
A
GLU
20
n
21
GLU
20
A
ASN
21
n
22
ASN
21
A
GLU
22
n
23
GLU
22
A
LEU
23
n
24
LEU
23
A
ALA
24
n
25
ALA
24
A
ARG
25
n
26
ARG
25
A
ILE
26
n
27
ILE
26
A
LYS
27
n
28
LYS
27
A
LYS
28
n
29
LYS
28
A
LEU
29
n
30
LEU
29
A
LEU
30
n
31
LEU
30
A
GLY
31
n
32
GLY
31
A
GLU
32
n
33
GLU
32
A
n
34
33
A
n
1
-1
B
n
2
1
B
MET
2
n
3
MET
2
B
LYS
3
n
4
LYS
3
B
GLN
4
n
5
GLN
4
B
ILE
5
n
6
ILE
5
B
GLU
6
n
7
GLU
6
B
ASP
7
n
8
ASP
7
B
LYS
8
n
9
LYS
8
B
ALA
9
n
10
ALA
9
B
GLU
10
n
11
GLU
10
B
GLU
11
n
12
GLU
11
B
ILE
12
n
13
ILE
12
B
LEU
13
n
14
LEU
13
B
SER
14
n
15
SER
14
B
LYS
15
n
16
LYS
15
B
LEU
16
n
17
LEU
16
B
TYR
17
n
18
TYR
17
B
HIS
18
n
19
HIS
18
B
ILE
19
n
20
ILE
19
B
GLU
20
n
21
GLU
20
B
ASN
21
n
22
ASN
21
B
GLU
22
n
23
GLU
22
B
LEU
23
n
24
LEU
23
B
ALA
24
n
25
ALA
24
B
ARG
25
n
26
ARG
25
B
ILE
26
n
27
ILE
26
B
LYS
27
n
28
LYS
27
B
LYS
28
n
29
LYS
28
B
LEU
29
n
30
LEU
29
B
LEU
30
n
31
LEU
30
B
GLY
31
n
32
GLY
31
B
GLU
32
n
33
GLU
32
B
n
34
33
B
author_and_software_defined_assembly
PQS
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
24_555
-z+3/4,-y+3/4,-x+3/4
crystal symmetry operation
58.8675000000
58.8675000000
58.8675000000
1
A
ACE
-1
A
ACE
1
1
Y
1
A
ARG
1
A
ARG
2
1
Y
1
A
ARG
33
A
ARG
34
1
Y
1
B
ACE
-1
B
ACE
1
1
Y
1
B
ARG
1
B
ARG
2
1
Y
1
B
ARG
33
B
ARG
34
1
Y
1
A
B
O
O
HOH
HOH
2002
2001
1.96
1
B
B
O
O
HOH
HOH
2001
2002
1.98
1
-10.30
1.70
111.00
100.70
A
A
A
CB
CG
CD2
LEU
LEU
LEU
23
23
23
N
1
5.99
0.50
120.30
126.29
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
25
25
25
N
1
7.45
1.20
123.30
130.75
B
B
B
OE1
CD
OE2
GLU
GLU
GLU
6
6
6
N
1
7.13
0.90
118.30
125.43
B
B
B
CB
CG
OD1
ASP
ASP
ASP
7
7
7
N
1
A
A
CD
CE
LYS
LYS
8
8
0.157
0.025
1.508
1.665
N
1
A
A
CA
CB
SER
SER
14
14
0.091
0.015
1.525
1.616
N
1
A
A
CG
CD2
TYR
TYR
17
17
-0.122
0.013
1.387
1.265
N
1
A
A
CD
OE2
GLU
GLU
20
20
0.074
0.011
1.252
1.326
N
1
A
A
CD
OE2
GLU
GLU
22
22
0.068
0.011
1.252
1.320
N
1
A
A
CG
CD
ARG
ARG
25
25
0.182
0.025
1.515
1.697
N
1
A
A
NE
CZ
ARG
ARG
25
25
0.096
0.013
1.326
1.422
N
1
B
B
CD
OE1
GLU
GLU
6
6
0.069
0.011
1.252
1.321
N
1
B
B
CD
OE2
GLU
GLU
10
10
-0.110
0.011
1.252
1.142
N
1
B
B
CA
CB
ILE
ILE
12
12
-0.160
0.023
1.544
1.384
N
1
B
B
N
CA
LEU
LEU
13
13
0.213
0.020
1.459
1.672
N
1
B
B
CA
C
LEU
LEU
13
13
-0.176
0.026
1.525
1.349
N
1
B
B
CB
CG
TYR
TYR
17
17
0.118
0.015
1.512
1.630
N
1
B
B
CG
CD1
TYR
TYR
17
17
-0.089
0.013
1.387
1.298
N
1
B
B
CG
CD
GLU
GLU
22
22
0.106
0.015
1.515
1.621
N
1
B
B
CD
CE
LYS
LYS
28
28
0.165
0.025
1.508
1.673
N
1
A
LEU
29
-45.90
-18.86
46.672
0.28305
0.26137
0.26238
2.07
55.90
245
5176
4.5
99.83
5.280
0.149
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.230
0.191
2.07
55.90
10
532
8
0
514
2.070
35.100
1UO5
5435
2.000
0.03000
1
14.6000
7.400
100.0
0.20500
2.07
2.14
3.200
1
6.83
100.0
refinement
REFMAC
data reduction
CrystalClear
(MSC/RIGAKU)
data scaling
SCALA
phasing
MOLREP
GENERAL CONTROL PROTEIN GCN4
Structure Based Engineering of Internal Molecular Surfaces Of Four Helix Bundles
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
MET
2
A
MET
3
HELX_P
A
LEU
30
A
LEU
31
1
1
29
B
MET
2
B
MET
3
HELX_P
B
GLU
32
B
GLU
33
1
2
31
FOUR HELIX BUNDLE
FOUR HELIX BUNDLE, CAVITY, IODOBENZENE
1UO5
PDB
1
1UO5
GCN4_YEAST
UNP
1
P03069
-1
-1
1UO5
-1
-1
1UO5
A
1
1
1
249
281
1UO5
1
33
P03069
A
2
2
34
-1
-1
1UO5
-1
-1
1UO5
B
1
1
1
249
281
1UO5
1
33
P03069
B
2
2
34
1
LEU
conflict
ILE
5
1UO5
A
P03069
UNP
253
6
1
VAL
engineered mutation
ALA
9
1UO5
A
P03069
UNP
257
10
1
LEU
conflict
ILE
12
1UO5
A
P03069
UNP
260
13
1
ASN
conflict
LEU
16
1UO5
A
P03069
UNP
264
17
1
LEU
conflict
ILE
19
1UO5
A
P03069
UNP
267
20
1
VAL
conflict
LEU
23
1UO5
A
P03069
UNP
271
24
1
LEU
conflict
ILE
26
1UO5
A
P03069
UNP
274
27
1
VAL
conflict
LEU
30
1UO5
A
P03069
UNP
278
31
3
LEU
conflict
ILE
5
1UO5
B
P03069
UNP
253
6
3
VAL
engineered mutation
ALA
9
1UO5
B
P03069
UNP
257
10
3
LEU
conflict
ILE
12
1UO5
B
P03069
UNP
260
13
3
ASN
conflict
LEU
16
1UO5
B
P03069
UNP
264
17
3
LEU
conflict
ILE
19
1UO5
B
P03069
UNP
267
20
3
VAL
conflict
LEU
23
1UO5
B
P03069
UNP
271
24
3
LEU
conflict
ILE
26
1UO5
B
P03069
UNP
274
27
3
VAL
conflict
LEU
30
1UO5
B
P03069
UNP
278
31
BINDING SITE FOR RESIDUE CL A1033
Software
4
BINDING SITE FOR RESIDUE PIH A1034
Software
2
A
GLU
10
A
GLU
11
4
1_555
B
LYS
8
B
LYS
9
4
1_555
B
HIS
18
B
HIS
19
4
1_555
B
ASN
21
B
ASN
22
4
1_555
A
ILE
5
A
ILE
6
2
1_555
A
ILE
12
A
ILE
13
2
1_555
213
P 41 3 2