0.008085
0.004668
0.000000
0.000000
0.009336
0.000000
0.000000
0.000000
0.020925
0.00000
0.00000
0.00000
Komander, D.
Garrido-Franco, M.
Kular, G.S.
Schuttelkopf, A.W.
Deak, M.
Prakash, K.R.
Bain, J.
Elliot, M.
Kozikowski, A.P.
Alessi, D.R.
Van Aalten, D.M.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
123.682
123.682
47.789
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C24 H22 N4 O2
398.457
3-[1-(3-AMINOPROPYL)-1H-INDOL-3-YL]-4-(1-METHYL-1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H8 N O6 P
185.072
n
PHOSPHOSERINE
PHOSPHONOSERINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
N
N
76
N
C
N
77
N
C
N
78
N
C
Y
79
N
N
Y
80
N
C
Y
81
N
C
Y
82
N
C
Y
83
N
C
Y
84
N
C
Y
85
N
C
Y
86
N
C
Y
87
N
C
N
88
N
C
N
89
N
C
N
90
N
O
N
91
N
N
N
92
N
C
N
93
N
O
N
94
N
C
Y
95
N
C
Y
96
N
C
Y
97
N
C
Y
98
N
C
Y
99
N
C
Y
100
N
C
Y
101
N
C
Y
102
N
N
Y
103
N
C
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
N
N
127
R
C
N
128
N
C
N
129
N
O
N
130
N
C
N
131
N
S
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
N
C
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
N
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
O
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
N
C
N
181
N
C
N
182
N
O
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
C
N
190
N
O
N
191
N
C
N
192
N
O
N
193
N
C
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
N
C
Y
208
N
C
Y
209
N
N
Y
210
N
C
Y
211
N
C
Y
212
N
N
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
S
C
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
N
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
N
301
N
C
N
302
N
S
N
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
C
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
O
N
363
N
P
N
364
N
O
N
365
N
O
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
S
N
390
N
O
N
391
N
O
N
392
N
O
N
393
N
O
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
R
C
N
399
N
O
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
N
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
N
449
N
O
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
N
N
463
S
C
N
464
N
C
N
465
N
O
N
466
N
C
N
467
N
C
N
468
N
C
N
469
N
O
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
Y
86
N
sing
Y
87
N
sing
Y
88
N
doub
N
89
N
sing
Y
90
N
sing
Y
91
N
doub
Y
92
N
doub
N
93
N
sing
Y
94
N
sing
N
95
N
sing
Y
96
N
doub
N
97
N
sing
Y
98
N
sing
N
99
N
sing
Y
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
Y
111
N
sing
Y
112
N
doub
Y
113
N
doub
Y
114
N
sing
Y
115
N
sing
N
116
N
sing
Y
117
N
doub
N
118
N
sing
Y
119
N
sing
N
120
N
sing
Y
121
N
doub
N
122
N
sing
Y
123
N
sing
Y
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
Y
209
N
sing
Y
210
N
doub
Y
211
N
doub
N
212
N
sing
Y
213
N
sing
N
214
N
sing
Y
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
Y
408
N
doub
Y
409
N
sing
Y
410
N
sing
N
411
N
sing
Y
412
N
doub
Y
413
N
sing
Y
414
N
sing
N
415
N
sing
Y
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
doub
N
420
N
sing
Y
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
UK
Structure
STRUE6
2005
0969-2126
12
215
10.1016/J.STR.2004.01.005
14962382
Interactions of Ly333531 and Other Bisindolyl Maleimide Inhibitors with Pdk1
2004
10.2210/pdb1uvr/pdb
pdb_00001uvr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2003-02-15
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.934
1.0
ID14-1
ESRF
0.934
SYNCHROTRON
ESRF BEAMLINE ID14-1
33452.469
3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1
2.7.1.37
KINASE DOMAIN, RESIDUES 71-359
1
man
polymer
92.094
GLYCEROL
8
syn
non-polymer
96.063
SULFATE ION
4
syn
non-polymer
398.457
3-[1-(3-AMINOPROPYL)-1H-INDOL-3-YL]-4-(1-METHYL-1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE
1
syn
non-polymer
18.015
water
80
nat
water
HPDK1
no
yes
PPQPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQ
DDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL
SPESKQARAN(SEP)FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF
PKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT
PPQPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQ
DDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL
SPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKAR
DLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
BACULOVIRUS INFECTED
SF21
9606
HOMO SAPIENS
Sf21
7108
SPODOPTERA FRUGIPERDA
BACULOVIRUS
PFASTBAC1
1
3
58
7.50
2.0 M AMMONIUM SULPHATE, 0.1 M TRIS-HCL PH 7.75
entity_src_gen
pdbx_database_proc
pdbx_database_status
struct_conn
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Derived calculations
Other
Source and taxonomy
Data collection
Database references
Other
Refinement description
1
0
2004-03-04
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-04-24
1
4
2023-12-13
_entity_src_gen.pdbx_host_org_cell_line
_pdbx_database_status.recvd_author_approval
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN PDK1 CATALYTIC DOMAIN
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH STAUROSPORINE
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH UCN-01
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH LY333531
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-2
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-1
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-3
PDBE
Y
PDBE
2004-01-22
REL
REL
GOL
GLYCEROL
SO4
SULFATE ION
BI8
3-[1-(3-AMINOPROPYL)-1H-INDOL-3-YL]-4-(1-METHYL-1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE
HOH
water
1H1W
PDB ENTRY 1H1W
PDB
experimental model
GOL
1359
2
GOL
GOL
1359
A
GOL
1361
2
GOL
GOL
1361
A
GOL
1362
2
GOL
GOL
1362
A
GOL
1363
2
GOL
GOL
1363
A
GOL
1364
2
GOL
GOL
1364
A
GOL
1365
2
GOL
GOL
1365
A
GOL
1366
2
GOL
GOL
1366
A
GOL
1367
2
GOL
GOL
1367
A
SO4
1368
3
SO4
SO4
1368
A
SO4
1369
3
SO4
SO4
1369
A
SO4
1370
3
SO4
SO4
1370
A
SO4
1371
3
SO4
SO4
1371
A
BI8
1372
4
BI8
BI8
1372
A
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2043
5
HOH
HOH
2043
A
HOH
2044
5
HOH
HOH
2044
A
HOH
2045
5
HOH
HOH
2045
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2048
5
HOH
HOH
2048
A
HOH
2049
5
HOH
HOH
2049
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2054
5
HOH
HOH
2054
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2059
5
HOH
HOH
2059
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2063
5
HOH
HOH
2063
A
HOH
2064
5
HOH
HOH
2064
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2069
5
HOH
HOH
2069
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2071
5
HOH
HOH
2071
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2074
5
HOH
HOH
2074
A
HOH
2075
5
HOH
HOH
2075
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2077
5
HOH
HOH
2077
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2079
5
HOH
HOH
2079
A
HOH
2080
5
HOH
HOH
2080
A
PRO
71
n
1
PRO
71
A
PRO
72
n
2
PRO
72
A
GLN
73
n
3
GLN
73
A
PRO
74
n
4
PRO
74
A
ARG
75
n
5
ARG
75
A
LYS
76
n
6
LYS
76
A
LYS
77
n
7
LYS
77
A
ARG
78
n
8
ARG
78
A
PRO
79
n
9
PRO
79
A
GLU
80
n
10
GLU
80
A
ASP
81
n
11
ASP
81
A
PHE
82
n
12
PHE
82
A
LYS
83
n
13
LYS
83
A
PHE
84
n
14
PHE
84
A
GLY
85
n
15
GLY
85
A
LYS
86
n
16
LYS
86
A
ILE
87
n
17
ILE
87
A
LEU
88
n
18
LEU
88
A
GLY
89
n
19
GLY
89
A
GLU
90
n
20
GLU
90
A
GLY
91
n
21
GLY
91
A
SER
92
n
22
SER
92
A
PHE
93
n
23
PHE
93
A
SER
94
n
24
SER
94
A
THR
95
n
25
THR
95
A
VAL
96
n
26
VAL
96
A
VAL
97
n
27
VAL
97
A
LEU
98
n
28
LEU
98
A
ALA
99
n
29
ALA
99
A
ARG
100
n
30
ARG
100
A
GLU
101
n
31
GLU
101
A
LEU
102
n
32
LEU
102
A
ALA
103
n
33
ALA
103
A
THR
104
n
34
THR
104
A
SER
105
n
35
SER
105
A
ARG
106
n
36
ARG
106
A
GLU
107
n
37
GLU
107
A
TYR
108
n
38
TYR
108
A
ALA
109
n
39
ALA
109
A
ILE
110
n
40
ILE
110
A
LYS
111
n
41
LYS
111
A
ILE
112
n
42
ILE
112
A
LEU
113
n
43
LEU
113
A
GLU
114
n
44
GLU
114
A
LYS
115
n
45
LYS
115
A
ARG
116
n
46
ARG
116
A
HIS
117
n
47
HIS
117
A
ILE
118
n
48
ILE
118
A
ILE
119
n
49
ILE
119
A
LYS
120
n
50
LYS
120
A
GLU
121
n
51
GLU
121
A
ASN
122
n
52
ASN
122
A
LYS
123
n
53
LYS
123
A
VAL
124
n
54
VAL
124
A
PRO
125
n
55
PRO
125
A
TYR
126
n
56
TYR
126
A
VAL
127
n
57
VAL
127
A
THR
128
n
58
THR
128
A
ARG
129
n
59
ARG
129
A
GLU
130
n
60
GLU
130
A
ARG
131
n
61
ARG
131
A
ASP
132
n
62
ASP
132
A
VAL
133
n
63
VAL
133
A
MET
134
n
64
MET
134
A
SER
135
n
65
SER
135
A
ARG
136
n
66
ARG
136
A
LEU
137
n
67
LEU
137
A
ASP
138
n
68
ASP
138
A
HIS
139
n
69
HIS
139
A
PRO
140
n
70
PRO
140
A
PHE
141
n
71
PHE
141
A
PHE
142
n
72
PHE
142
A
VAL
143
n
73
VAL
143
A
LYS
144
n
74
LYS
144
A
LEU
145
n
75
LEU
145
A
TYR
146
n
76
TYR
146
A
PHE
147
n
77
PHE
147
A
THR
148
n
78
THR
148
A
PHE
149
n
79
PHE
149
A
GLN
150
n
80
GLN
150
A
ASP
151
n
81
ASP
151
A
ASP
152
n
82
ASP
152
A
GLU
153
n
83
GLU
153
A
LYS
154
n
84
LYS
154
A
LEU
155
n
85
LEU
155
A
TYR
156
n
86
TYR
156
A
PHE
157
n
87
PHE
157
A
GLY
158
n
88
GLY
158
A
LEU
159
n
89
LEU
159
A
SER
160
n
90
SER
160
A
TYR
161
n
91
TYR
161
A
ALA
162
n
92
ALA
162
A
LYS
163
n
93
LYS
163
A
ASN
164
n
94
ASN
164
A
GLY
165
n
95
GLY
165
A
GLU
166
n
96
GLU
166
A
LEU
167
n
97
LEU
167
A
LEU
168
n
98
LEU
168
A
LYS
169
n
99
LYS
169
A
TYR
170
n
100
TYR
170
A
ILE
171
n
101
ILE
171
A
ARG
172
n
102
ARG
172
A
LYS
173
n
103
LYS
173
A
ILE
174
n
104
ILE
174
A
GLY
175
n
105
GLY
175
A
SER
176
n
106
SER
176
A
PHE
177
n
107
PHE
177
A
ASP
178
n
108
ASP
178
A
GLU
179
n
109
GLU
179
A
THR
180
n
110
THR
180
A
CYS
181
n
111
CYS
181
A
THR
182
n
112
THR
182
A
ARG
183
n
113
ARG
183
A
PHE
184
n
114
PHE
184
A
TYR
185
n
115
TYR
185
A
THR
186
n
116
THR
186
A
ALA
187
n
117
ALA
187
A
GLU
188
n
118
GLU
188
A
ILE
189
n
119
ILE
189
A
VAL
190
n
120
VAL
190
A
SER
191
n
121
SER
191
A
ALA
192
n
122
ALA
192
A
LEU
193
n
123
LEU
193
A
GLU
194
n
124
GLU
194
A
TYR
195
n
125
TYR
195
A
LEU
196
n
126
LEU
196
A
HIS
197
n
127
HIS
197
A
GLY
198
n
128
GLY
198
A
LYS
199
n
129
LYS
199
A
GLY
200
n
130
GLY
200
A
ILE
201
n
131
ILE
201
A
ILE
202
n
132
ILE
202
A
HIS
203
n
133
HIS
203
A
ARG
204
n
134
ARG
204
A
ASP
205
n
135
ASP
205
A
LEU
206
n
136
LEU
206
A
LYS
207
n
137
LYS
207
A
PRO
208
n
138
PRO
208
A
GLU
209
n
139
GLU
209
A
ASN
210
n
140
ASN
210
A
ILE
211
n
141
ILE
211
A
LEU
212
n
142
LEU
212
A
LEU
213
n
143
LEU
213
A
ASN
214
n
144
ASN
214
A
GLU
215
n
145
GLU
215
A
ASP
216
n
146
ASP
216
A
MET
217
n
147
MET
217
A
HIS
218
n
148
HIS
218
A
ILE
219
n
149
ILE
219
A
GLN
220
n
150
GLN
220
A
ILE
221
n
151
ILE
221
A
THR
222
n
152
THR
222
A
ASP
223
n
153
ASP
223
A
PHE
224
n
154
PHE
224
A
GLY
225
n
155
GLY
225
A
THR
226
n
156
THR
226
A
ALA
227
n
157
ALA
227
A
LYS
228
n
158
LYS
228
A
VAL
229
n
159
VAL
229
A
LEU
230
n
160
LEU
230
A
SER
231
n
161
SER
231
A
PRO
232
n
162
PRO
232
A
n
163
233
A
n
164
234
A
n
165
235
A
n
166
236
A
ALA
237
n
167
ALA
237
A
ARG
238
n
168
ARG
238
A
ALA
239
n
169
ALA
239
A
ASN
240
n
170
ASN
240
A
SEP
241
n
171
SEP
241
A
PHE
242
n
172
PHE
242
A
VAL
243
n
173
VAL
243
A
GLY
244
n
174
GLY
244
A
THR
245
n
175
THR
245
A
ALA
246
n
176
ALA
246
A
GLN
247
n
177
GLN
247
A
TYR
248
n
178
TYR
248
A
VAL
249
n
179
VAL
249
A
SER
250
n
180
SER
250
A
PRO
251
n
181
PRO
251
A
GLU
252
n
182
GLU
252
A
LEU
253
n
183
LEU
253
A
LEU
254
n
184
LEU
254
A
THR
255
n
185
THR
255
A
GLU
256
n
186
GLU
256
A
LYS
257
n
187
LYS
257
A
SER
258
n
188
SER
258
A
ALA
259
n
189
ALA
259
A
CYS
260
n
190
CYS
260
A
LYS
261
n
191
LYS
261
A
SER
262
n
192
SER
262
A
SER
263
n
193
SER
263
A
ASP
264
n
194
ASP
264
A
LEU
265
n
195
LEU
265
A
TRP
266
n
196
TRP
266
A
ALA
267
n
197
ALA
267
A
LEU
268
n
198
LEU
268
A
GLY
269
n
199
GLY
269
A
CYS
270
n
200
CYS
270
A
ILE
271
n
201
ILE
271
A
ILE
272
n
202
ILE
272
A
TYR
273
n
203
TYR
273
A
GLN
274
n
204
GLN
274
A
LEU
275
n
205
LEU
275
A
VAL
276
n
206
VAL
276
A
ALA
277
n
207
ALA
277
A
GLY
278
n
208
GLY
278
A
LEU
279
n
209
LEU
279
A
PRO
280
n
210
PRO
280
A
PRO
281
n
211
PRO
281
A
PHE
282
n
212
PHE
282
A
ARG
283
n
213
ARG
283
A
ALA
284
n
214
ALA
284
A
GLY
285
n
215
GLY
285
A
ASN
286
n
216
ASN
286
A
GLU
287
n
217
GLU
287
A
TYR
288
n
218
TYR
288
A
LEU
289
n
219
LEU
289
A
ILE
290
n
220
ILE
290
A
PHE
291
n
221
PHE
291
A
GLN
292
n
222
GLN
292
A
LYS
293
n
223
LYS
293
A
ILE
294
n
224
ILE
294
A
ILE
295
n
225
ILE
295
A
LYS
296
n
226
LYS
296
A
LEU
297
n
227
LEU
297
A
GLU
298
n
228
GLU
298
A
TYR
299
n
229
TYR
299
A
ASP
300
n
230
ASP
300
A
PHE
301
n
231
PHE
301
A
PRO
302
n
232
PRO
302
A
GLU
303
n
233
GLU
303
A
LYS
304
n
234
LYS
304
A
PHE
305
n
235
PHE
305
A
PHE
306
n
236
PHE
306
A
PRO
307
n
237
PRO
307
A
LYS
308
n
238
LYS
308
A
ALA
309
n
239
ALA
309
A
ARG
310
n
240
ARG
310
A
ASP
311
n
241
ASP
311
A
LEU
312
n
242
LEU
312
A
VAL
313
n
243
VAL
313
A
GLU
314
n
244
GLU
314
A
LYS
315
n
245
LYS
315
A
LEU
316
n
246
LEU
316
A
LEU
317
n
247
LEU
317
A
VAL
318
n
248
VAL
318
A
LEU
319
n
249
LEU
319
A
ASP
320
n
250
ASP
320
A
ALA
321
n
251
ALA
321
A
THR
322
n
252
THR
322
A
LYS
323
n
253
LYS
323
A
ARG
324
n
254
ARG
324
A
LEU
325
n
255
LEU
325
A
GLY
326
n
256
GLY
326
A
CYS
327
n
257
CYS
327
A
GLU
328
n
258
GLU
328
A
GLU
329
n
259
GLU
329
A
MET
330
n
260
MET
330
A
GLU
331
n
261
GLU
331
A
GLY
332
n
262
GLY
332
A
TYR
333
n
263
TYR
333
A
GLY
334
n
264
GLY
334
A
PRO
335
n
265
PRO
335
A
LEU
336
n
266
LEU
336
A
LYS
337
n
267
LYS
337
A
ALA
338
n
268
ALA
338
A
HIS
339
n
269
HIS
339
A
PRO
340
n
270
PRO
340
A
PHE
341
n
271
PHE
341
A
PHE
342
n
272
PHE
342
A
GLU
343
n
273
GLU
343
A
SER
344
n
274
SER
344
A
VAL
345
n
275
VAL
345
A
THR
346
n
276
THR
346
A
TRP
347
n
277
TRP
347
A
GLU
348
n
278
GLU
348
A
ASN
349
n
279
ASN
349
A
LEU
350
n
280
LEU
350
A
HIS
351
n
281
HIS
351
A
GLN
352
n
282
GLN
352
A
GLN
353
n
283
GLN
353
A
THR
354
n
284
THR
354
A
PRO
355
n
285
PRO
355
A
PRO
356
n
286
PRO
356
A
LYS
357
n
287
LYS
357
A
LEU
358
n
288
LEU
358
A
THR
359
n
289
THR
359
A
author_and_software_defined_assembly
PQS
1
monomeric
A
SEP
241
PHOSPHOSERINE
A
SEP
171
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
88
A
N
LEU
18
A
O
VAL
96
A
O
VAL
26
A
N
ALA
99
A
N
ALA
29
A
O
TYR
108
A
O
TYR
38
A
N
LEU
113
A
N
LEU
43
A
O
LEU
155
A
O
LEU
85
A
O
GLY
158
A
O
GLY
88
A
N
TYR
146
A
N
TYR
76
A
N
ILE
202
A
N
ILE
132
A
O
LYS
228
A
O
LYS
158
A
N
LEU
212
A
N
LEU
142
A
O
GLN
220
A
O
GLN
150
1
A
CG
ARG
238
A
CG
ARG
168
1
Y
1
A
CD
ARG
238
A
CD
ARG
168
1
Y
1
A
NE
ARG
238
A
NE
ARG
168
1
Y
1
A
CZ
ARG
238
A
CZ
ARG
168
1
Y
1
A
NH1
ARG
238
A
NH1
ARG
168
1
Y
1
A
NH2
ARG
238
A
NH2
ARG
168
1
Y
1
A
CG
LYS
304
A
CG
LYS
234
1
Y
1
A
CD
LYS
304
A
CD
LYS
234
1
Y
1
A
CE
LYS
304
A
CE
LYS
234
1
Y
1
A
NZ
LYS
304
A
NZ
LYS
234
1
Y
1
A
CG
GLU
348
A
CG
GLU
278
1
Y
1
A
CD
GLU
348
A
CD
GLU
278
1
Y
1
A
OE1
GLU
348
A
OE1
GLU
278
1
Y
1
A
OE2
GLU
348
A
OE2
GLU
278
1
Y
1
A
CG
LYS
357
A
CG
LYS
287
1
Y
1
A
CD
LYS
357
A
CD
LYS
287
1
Y
1
A
CE
LYS
357
A
CE
LYS
287
1
Y
1
A
NZ
LYS
357
A
NZ
LYS
287
1
Y
1
A
GLU
233
A
GLU
163
1
Y
1
A
SER
234
A
SER
164
1
Y
1
A
LYS
235
A
LYS
165
1
Y
1
A
GLN
236
A
GLN
166
1
Y
1
A
ASP
138
-163.59
72.14
1
A
ASP
151
-101.54
-156.74
1
A
ARG
204
76.81
-6.44
1
A
ASP
205
-154.90
48.34
1
A
MET
217
70.69
30.02
1
A
ASP
223
62.75
72.57
1
A
SER
231
-153.80
-2.15
1
A
ARG
238
-151.50
-143.23
1
A
ALA
239
-34.20
-167.57
1
A
SEP
241
-167.70
-91.88
1
A
LYS
304
-67.47
3.47
1
A
GLU
331
76.29
39.17
1
A
GLU
343
-29.63
-62.59
30.5
3.85
5.46
0.00
3.85
0.00
-7.70
SOME SIDECHAINS REFINED WITH OCCUPANCY = 0.00 DUE TO DISORDER. SOME RESIDUES MUTATED TO ALANINE DUE TO DISORDER.
0.248
0.195
0.17642
2.81
23.37
521
9482
5.5
99.9
4.062
0.122
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.159
0.152
PDB ENTRY 1H1W
2.81
23.37
80
2487
98
0
2309
40.0
2.800
25.000
1UVR
9493
0.13800
1
8.5000
3.500
90.5
0.51800
2.80
2.90
2.000
1
3.50
90.3
refinement
REFMAC
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
Structure of human PDK1 kinase domain in complex with BIM-8
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
ARG
78
A
ARG
8
HELX_P
A
GLU
80
A
GLU
10
5
1
3
A
LYS
115
A
LYS
45
HELX_P
A
GLU
121
A
GLU
51
1
2
7
A
LYS
123
A
LYS
53
HELX_P
A
LEU
137
A
LEU
67
1
3
15
A
GLU
166
A
GLU
96
HELX_P
A
GLY
175
A
GLY
105
1
4
10
A
ASP
178
A
ASP
108
HELX_P
A
LYS
199
A
LYS
129
1
5
22
A
THR
245
A
THR
175
HELX_P
A
VAL
249
A
VAL
179
5
6
5
A
SER
250
A
SER
180
HELX_P
A
GLU
256
A
GLU
186
1
7
7
A
LYS
261
A
LYS
191
HELX_P
A
GLY
278
A
GLY
208
1
8
18
A
ASN
286
A
ASN
216
HELX_P
A
LEU
297
A
LEU
227
1
9
12
A
PHE
306
A
PHE
236
HELX_P
A
LYS
315
A
LYS
245
1
10
10
A
GLY
332
A
GLY
262
HELX_P
A
ALA
338
A
ALA
268
1
11
7
A
HIS
339
A
HIS
269
HELX_P
A
GLU
343
A
GLU
273
5
12
5
A
ASN
349
A
ASN
279
HELX_P
A
GLN
353
A
GLN
283
5
13
5
covale
1.338
both
A
ASN
240
A
C
ASN
170
1_555
A
SEP
241
A
N
SEP
171
1_555
covale
1.331
both
A
SEP
241
A
C
SEP
171
1_555
A
PHE
242
A
N
PHE
172
1_555
TRANSFERASE
PROTEIN KINASE, PKB, PDK1, INHIBITOR, LY333531, BISINDOLYL MALEIMIDE, BIM-8, DIABETES, CANCER, TRANSFERASE
PDPK_HUMAN
UNP
1
O15530
71
359
1UVR
71
359
O15530
A
1
1
289
5
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
82
A
PHE
12
A
GLU
90
A
GLU
20
A
THR
95
A
THR
25
A
GLU
101
A
GLU
31
A
GLU
107
A
GLU
37
A
GLU
114
A
GLU
44
A
LYS
154
A
LYS
84
A
LEU
159
A
LEU
89
A
LEU
145
A
LEU
75
A
GLN
150
A
GLN
80
A
ILE
201
A
ILE
131
A
ILE
202
A
ILE
132
A
LYS
228
A
LYS
158
A
VAL
229
A
VAL
159
A
ILE
211
A
ILE
141
A
LEU
213
A
LEU
143
A
ILE
219
A
ILE
149
A
ILE
221
A
ILE
151
BINDING SITE FOR RESIDUE SO4 A1368
Software
5
BINDING SITE FOR RESIDUE SO4 A1369
Software
4
BINDING SITE FOR RESIDUE SO4 A1370
Software
4
BINDING SITE FOR RESIDUE SO4 A1371
Software
8
BINDING SITE FOR RESIDUE BI8 A1372
Software
14
BINDING SITE FOR RESIDUE GOL A1359
Software
7
BINDING SITE FOR RESIDUE GOL A1361
Software
6
BINDING SITE FOR RESIDUE GOL A1362
Software
3
BINDING SITE FOR RESIDUE GOL A1363
Software
3
BINDING SITE FOR RESIDUE GOL A1364
Software
7
BINDING SITE FOR RESIDUE GOL A1365
Software
9
BINDING SITE FOR RESIDUE GOL A1366
Software
5
BINDING SITE FOR RESIDUE GOL A1367
Software
7
A
LYS
76
A
LYS
6
5
1_555
A
ARG
131
A
ARG
61
5
1_555
A
THR
148
A
THR
78
5
1_555
A
PHE
149
A
PHE
79
5
1_555
A
GLN
150
A
GLN
80
5
1_555
A
TYR
146
A
TYR
76
4
1_555
A
SER
160
A
SER
90
4
1_555
A
GLN
220
A
GLN
150
4
1_555
A
GOL
1364
F
GOL
4
1_555
A
ARG
106
A
ARG
36
4
1_555
A
PRO
140
A
PRO
70
4
1_555
A
HIS
351
A
HIS
281
4
1_555
A
GOL
1364
F
GOL
4
1_555
A
GLY
91
A
GLY
21
8
1_555
A
SER
92
A
SER
22
8
1_555
A
PHE
93
A
PHE
23
8
1_555
A
SER
94
A
SER
24
8
1_555
A
GOL
1361
C
GOL
8
1_555
A
GOL
1367
I
GOL
8
1_555
A
HOH
2079
O
HOH
8
1_555
A
HOH
2080
O
HOH
8
1_555
A
LEU
88
A
LEU
18
14
1_555
A
GLY
89
A
GLY
19
14
1_555
A
ALA
109
A
ALA
39
14
1_555
A
VAL
143
A
VAL
73
14
1_555
A
LEU
159
A
LEU
89
14
1_555
A
SER
160
A
SER
90
14
1_555
A
TYR
161
A
TYR
91
14
1_555
A
ALA
162
A
ALA
92
14
1_555
A
GLU
166
A
GLU
96
14
1_555
A
GLU
209
A
GLU
139
14
1_555
A
LEU
212
A
LEU
142
14
1_555
A
THR
222
A
THR
152
14
1_555
A
ASP
223
A
ASP
153
14
1_555
A
GOL
1367
I
GOL
14
1_555
A
LYS
86
A
LYS
16
7
1_555
A
ILE
87
A
ILE
17
7
1_555
A
LEU
325
A
LEU
255
7
1_555
A
PRO
335
A
PRO
265
7
1_555
A
ALA
338
A
ALA
268
7
1_555
A
HIS
339
A
HIS
269
7
1_555
A
PRO
340
A
PRO
270
7
1_555
A
SER
94
A
SER
24
6
1_555
A
LYS
111
A
LYS
41
6
1_555
A
TYR
126
A
TYR
56
6
1_555
A
VAL
127
A
VAL
57
6
1_555
A
GLU
130
A
GLU
60
6
1_555
A
SO4
1371
M
SO4
6
1_555
A
LYS
76
A
LYS
6
3
1_555
A
PHE
147
A
PHE
77
3
1_555
A
THR
148
A
THR
78
3
1_555
A
LEU
297
A
LEU
227
3
1_555
A
TYR
299
A
TYR
229
3
1_555
A
PHE
301
A
PHE
231
3
1_555
A
ARG
106
A
ARG
36
7
1_555
A
GLU
107
A
GLU
37
7
1_555
A
TYR
146
A
TYR
76
7
1_555
A
TYR
161
A
TYR
91
7
1_555
A
SO4
1369
K
SO4
7
1_555
A
SO4
1370
L
SO4
7
1_555
A
HOH
2076
O
HOH
7
1_555
A
ALA
103
A
ALA
33
9
1_555
A
THR
104
A
THR
34
9
1_555
A
HIS
139
A
HIS
69
9
1_555
A
SER
191
A
SER
121
9
1_555
A
TRP
347
A
TRP
277
9
1_555
A
GLU
348
A
GLU
278
9
1_555
A
ASN
349
A
ASN
279
9
1_555
A
LEU
350
A
LEU
280
9
1_555
A
HIS
351
A
HIS
281
9
1_555
A
PHE
82
A
PHE
12
5
1_555
A
LYS
83
A
LYS
13
5
1_555
A
PHE
84
A
PHE
14
5
1_555
A
GLU
194
A
GLU
124
5
1_555
A
HOH
2078
O
HOH
5
1_555
A
GLU
90
A
GLU
20
7
1_555
A
GLY
91
A
GLY
21
7
1_555
A
SER
94
A
SER
24
7
1_555
A
VAL
96
A
VAL
26
7
1_555
A
SO4
1371
M
SO4
7
1_555
A
BI8
1372
N
BI8
7
1_555
A
HOH
2079
O
HOH
7
1_555
154
P 32 2 1