0.017250 0.009959 0.000000 0.000000 0.019919 0.000000 0.000000 0.000000 0.002886 0.00000 0.00000 0.00000 Oomen, C.J. Van Ulsen, P. Van Gelder, P. Feijen, M. Tommassen, J. Gros, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 57.970 57.970 346.435 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C20 H42 O6 378.544 PENTAETHYLENE GLYCOL MONODECYL ETHER non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N C N 76 N C N 77 N C N 78 N C N 79 N C N 80 N C N 81 N C N 82 N C N 83 N C N 84 N O N 85 N C N 86 N C N 87 N O N 88 N C N 89 N C N 90 N O N 91 N C N 92 N C N 93 N O N 94 N C N 95 N C N 96 N O N 97 N C N 98 N C N 99 N O N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N N N 143 S C N 144 N C N 145 N O N 146 N C N 147 N C N 148 N C N 149 N O N 150 N N N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 N C N 167 N C N 168 N C N 169 N O N 170 N O N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 N C N 183 N C N 184 N O N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C Y 196 N C Y 197 N N Y 198 N C Y 199 N C Y 200 N N N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N O N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 S C N 220 N C N 221 N C N 222 N C N 223 N O N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N C N 245 N O N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N C N 267 N N N 268 N O N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C N 289 N C N 290 N S N 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N C Y 313 N C Y 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N N N 345 S C N 346 N C N 347 N O N 348 N C N 349 N O N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N S N 359 N O N 360 N O N 361 N O N 362 N O N 363 N N N 364 S C N 365 N C N 366 N O N 367 R C N 368 N O N 369 N C N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N N Y 389 N C Y 390 N C Y 391 N C Y 392 N C Y 393 N C N 394 N O N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N N N 408 S C N 409 N C N 410 N O N 411 N C Y 412 N C Y 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N C N 418 N O N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N N N 432 S C N 433 N C N 434 N O N 435 N C N 436 N C N 437 N C N 438 N O N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing Y 194 N sing Y 195 N doub Y 196 N doub N 197 N sing Y 198 N sing N 199 N sing Y 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing Y 302 N doub Y 303 N sing Y 304 N sing N 305 N sing Y 306 N doub N 307 N sing Y 308 N doub N 309 N sing Y 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing Y 375 N doub Y 376 N sing Y 377 N sing N 378 N sing Y 379 N doub Y 380 N sing Y 381 N sing N 382 N sing Y 383 N sing Y 384 N doub N 385 N sing Y 386 N doub N 387 N sing Y 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing Y 403 N doub Y 404 N sing Y 405 N sing N 406 N sing Y 407 N doub N 408 N sing Y 409 N doub N 410 N sing Y 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N doub N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing UK Embo J. EMJODG 0897 0261-4189 23 1257 10.1038/SJ.EMBOJ.7600148 15014442 Structure of the Translocator Domain of a Bacterial Autotransporter 2004 10.2210/pdb1uyn/pdb pdb_00001uyn THR X 817 C-ALPHA IS PLANAR 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 2002-05-15 SINGLE WAVELENGTH M x-ray 1 0.934 1.0 ID14-1 ESRF 0.934 SYNCHROTRON ESRF BEAMLINE ID14-1 31847.115 NALP OUTER MEMBRANE TRANSLOCATOR DOMAIN, RESIDUES 776-1083 1 man polymer 378.544 PENTAETHYLENE GLYCOL MONODECYL ETHER 1 syn non-polymer 96.063 SULFATE ION 2 syn non-polymer 18.015 water 29 nat water OUTER MEMBRANE PROTEIN no no DGVRIFNSLAATVYADSTAAHADMQGRRLKAVSDGLDHNGTGLRVIAQTQQDGGTWEQGGVEGKMRGSTQTVGIAAKTGE NTTAAATLGMGRSTWSENSANAKTDSISLFAGIRHDAGDIGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGAL GGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRD YTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGNGWNGLARYSYAGSKQYGNHSGRVGVGYRF DGVRIFNSLAATVYADSTAAHADMQGRRLKAVSDGLDHNGTGLRVIAQTQQDGGTWEQGGVEGKMRGSTQTVGIAAKTGE NTTAAATLGMGRSTWSENSANAKTDSISLFAGIRHDAGDIGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGAL GGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRD YTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGNGWNGLARYSYAGSKQYGNHSGRVGVGYRF X polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n H44/76 sample OUTER MEMBRANE. REFOLDED PROTEIN 487 NEISSERIA MENINGITIDIS 469008 ESCHERICHIA COLI BL21(DE3) PET11A 1 2.64 53.38 4.00 200 MM LI2SO4, 100 MM NA CIT BUFFER, PH 4.0, 9% PEG 1000. PROTEIN WAS CRYSTALLISED IN THE PRESENCE OF 0.06% N-DECYLPENTAOXYETHYLENE AND 0.5% HEPTYL-B-GLUCOPYRANOSIDE chem_comp_atom chem_comp_bond database_2 pdbx_database_status struct_site repository Initial release Advisory Version format compliance Data collection Database references Derived calculations Other 1 0 2004-03-18 1 1 2011-07-13 1 2 2024-05-08 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id STRUCTURE OF TRANSLOCATOR DOMAIN OF AUTOTRANSPORTER NALP FROM NEISSERIA MENINGITIDIS SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "XA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 12-STRANDED BARREL. PDBE Y PDBE 2004-03-02 REL REL CXE PENTAETHYLENE GLYCOL MONODECYL ETHER SO4 SULFATE ION HOH water CXE 2085 2 CXE CXE 2085 X SO4 2086 3 SO4 SO4 2086 X SO4 2087 3 SO4 SO4 2087 X HOH 2001 4 HOH HOH 2001 X HOH 2002 4 HOH HOH 2002 X HOH 2003 4 HOH HOH 2003 X HOH 2004 4 HOH HOH 2004 X HOH 2005 4 HOH HOH 2005 X HOH 2006 4 HOH HOH 2006 X HOH 2007 4 HOH HOH 2007 X HOH 2008 4 HOH HOH 2008 X HOH 2009 4 HOH HOH 2009 X HOH 2010 4 HOH HOH 2010 X HOH 2011 4 HOH HOH 2011 X HOH 2012 4 HOH HOH 2012 X HOH 2013 4 HOH HOH 2013 X HOH 2014 4 HOH HOH 2014 X HOH 2015 4 HOH HOH 2015 X HOH 2016 4 HOH HOH 2016 X HOH 2017 4 HOH HOH 2017 X HOH 2018 4 HOH HOH 2018 X HOH 2019 4 HOH HOH 2019 X HOH 2020 4 HOH HOH 2020 X HOH 2021 4 HOH HOH 2021 X HOH 2022 4 HOH HOH 2022 X HOH 2023 4 HOH HOH 2023 X HOH 2024 4 HOH HOH 2024 X HOH 2025 4 HOH HOH 2025 X HOH 2026 4 HOH HOH 2026 X HOH 2027 4 HOH HOH 2027 X HOH 2028 4 HOH HOH 2028 X HOH 2029 4 HOH HOH 2029 X n 1 777 X n 2 778 X n 3 779 X n 4 780 X n 5 781 X n 6 782 X n 7 783 X n 8 784 X n 9 785 X ALA 786 n 10 ALA 786 X ALA 787 n 11 ALA 787 X THR 788 n 12 THR 788 X VAL 789 n 13 VAL 789 X TYR 790 n 14 TYR 790 X ALA 791 n 15 ALA 791 X ASP 792 n 16 ASP 792 X SER 793 n 17 SER 793 X THR 794 n 18 THR 794 X ALA 795 n 19 ALA 795 X ALA 796 n 20 ALA 796 X HIS 797 n 21 HIS 797 X ALA 798 n 22 ALA 798 X ASP 799 n 23 ASP 799 X MET 800 n 24 MET 800 X GLN 801 n 25 GLN 801 X GLY 802 n 26 GLY 802 X ARG 803 n 27 ARG 803 X ARG 804 n 28 ARG 804 X LEU 805 n 29 LEU 805 X LYS 806 n 30 LYS 806 X ALA 807 n 31 ALA 807 X VAL 808 n 32 VAL 808 X SER 809 n 33 SER 809 X ASP 810 n 34 ASP 810 X GLY 811 n 35 GLY 811 X LEU 812 n 36 LEU 812 X ASP 813 n 37 ASP 813 X HIS 814 n 38 HIS 814 X ASN 815 n 39 ASN 815 X GLY 816 n 40 GLY 816 X THR 817 n 41 THR 817 X GLY 818 n 42 GLY 818 X LEU 819 n 43 LEU 819 X ARG 820 n 44 ARG 820 X VAL 821 n 45 VAL 821 X ILE 822 n 46 ILE 822 X ALA 823 n 47 ALA 823 X GLN 824 n 48 GLN 824 X THR 825 n 49 THR 825 X GLN 826 n 50 GLN 826 X GLN 827 n 51 GLN 827 X ASP 828 n 52 ASP 828 X GLY 829 n 53 GLY 829 X GLY 830 n 54 GLY 830 X THR 831 n 55 THR 831 X TRP 832 n 56 TRP 832 X GLU 833 n 57 GLU 833 X GLN 834 n 58 GLN 834 X GLY 835 n 59 GLY 835 X GLY 836 n 60 GLY 836 X VAL 837 n 61 VAL 837 X GLU 838 n 62 GLU 838 X GLY 839 n 63 GLY 839 X LYS 840 n 64 LYS 840 X MET 841 n 65 MET 841 X ARG 842 n 66 ARG 842 X GLY 843 n 67 GLY 843 X SER 844 n 68 SER 844 X THR 845 n 69 THR 845 X GLN 846 n 70 GLN 846 X THR 847 n 71 THR 847 X VAL 848 n 72 VAL 848 X GLY 849 n 73 GLY 849 X ILE 850 n 74 ILE 850 X ALA 851 n 75 ALA 851 X ALA 852 n 76 ALA 852 X LYS 853 n 77 LYS 853 X THR 854 n 78 THR 854 X GLY 855 n 79 GLY 855 X GLU 856 n 80 GLU 856 X ASN 857 n 81 ASN 857 X THR 858 n 82 THR 858 X THR 859 n 83 THR 859 X ALA 860 n 84 ALA 860 X ALA 861 n 85 ALA 861 X ALA 862 n 86 ALA 862 X THR 863 n 87 THR 863 X LEU 864 n 88 LEU 864 X GLY 865 n 89 GLY 865 X MET 866 n 90 MET 866 X GLY 867 n 91 GLY 867 X ARG 868 n 92 ARG 868 X SER 869 n 93 SER 869 X THR 870 n 94 THR 870 X TRP 871 n 95 TRP 871 X SER 872 n 96 SER 872 X GLU 873 n 97 GLU 873 X ASN 874 n 98 ASN 874 X SER 875 n 99 SER 875 X ALA 876 n 100 ALA 876 X ASN 877 n 101 ASN 877 X ALA 878 n 102 ALA 878 X LYS 879 n 103 LYS 879 X THR 880 n 104 THR 880 X ASP 881 n 105 ASP 881 X SER 882 n 106 SER 882 X ILE 883 n 107 ILE 883 X SER 884 n 108 SER 884 X LEU 885 n 109 LEU 885 X PHE 886 n 110 PHE 886 X ALA 887 n 111 ALA 887 X GLY 888 n 112 GLY 888 X ILE 889 n 113 ILE 889 X ARG 890 n 114 ARG 890 X HIS 891 n 115 HIS 891 X ASP 892 n 116 ASP 892 X ALA 893 n 117 ALA 893 X GLY 894 n 118 GLY 894 X ASP 895 n 119 ASP 895 X ILE 896 n 120 ILE 896 X GLY 897 n 121 GLY 897 X TYR 898 n 122 TYR 898 X LEU 899 n 123 LEU 899 X LYS 900 n 124 LYS 900 X GLY 901 n 125 GLY 901 X LEU 902 n 126 LEU 902 X PHE 903 n 127 PHE 903 X SER 904 n 128 SER 904 X TYR 905 n 129 TYR 905 X GLY 906 n 130 GLY 906 X ARG 907 n 131 ARG 907 X TYR 908 n 132 TYR 908 X LYS 909 n 133 LYS 909 X ASN 910 n 134 ASN 910 X SER 911 n 135 SER 911 X ILE 912 n 136 ILE 912 X SER 913 n 137 SER 913 X ARG 914 n 138 ARG 914 X SER 915 n 139 SER 915 X THR 916 n 140 THR 916 X GLY 917 n 141 GLY 917 X ALA 918 n 142 ALA 918 X ASP 919 n 143 ASP 919 X GLU 920 n 144 GLU 920 X HIS 921 n 145 HIS 921 X ALA 922 n 146 ALA 922 X GLU 923 n 147 GLU 923 X GLY 924 n 148 GLY 924 X SER 925 n 149 SER 925 X VAL 926 n 150 VAL 926 X ASN 927 n 151 ASN 927 X GLY 928 n 152 GLY 928 X THR 929 n 153 THR 929 X LEU 930 n 154 LEU 930 X MET 931 n 155 MET 931 X GLN 932 n 156 GLN 932 X LEU 933 n 157 LEU 933 X GLY 934 n 158 GLY 934 X ALA 935 n 159 ALA 935 X LEU 936 n 160 LEU 936 X GLY 937 n 161 GLY 937 X GLY 938 n 162 GLY 938 X VAL 939 n 163 VAL 939 X ASN 940 n 164 ASN 940 X VAL 941 n 165 VAL 941 X PRO 942 n 166 PRO 942 X n 167 943 X n 168 944 X n 169 945 X THR 946 n 170 THR 946 X GLY 947 n 171 GLY 947 X ASP 948 n 172 ASP 948 X LEU 949 n 173 LEU 949 X THR 950 n 174 THR 950 X VAL 951 n 175 VAL 951 X GLU 952 n 176 GLU 952 X GLY 953 n 177 GLY 953 X GLY 954 n 178 GLY 954 X LEU 955 n 179 LEU 955 X ARG 956 n 180 ARG 956 X TYR 957 n 181 TYR 957 X ASP 958 n 182 ASP 958 X LEU 959 n 183 LEU 959 X LEU 960 n 184 LEU 960 X LYS 961 n 185 LYS 961 X GLN 962 n 186 GLN 962 X ASP 963 n 187 ASP 963 X ALA 964 n 188 ALA 964 X PHE 965 n 189 PHE 965 X ALA 966 n 190 ALA 966 X GLU 967 n 191 GLU 967 X LYS 968 n 192 LYS 968 X GLY 969 n 193 GLY 969 X SER 970 n 194 SER 970 X ALA 971 n 195 ALA 971 X LEU 972 n 196 LEU 972 X GLY 973 n 197 GLY 973 X TRP 974 n 198 TRP 974 X SER 975 n 199 SER 975 X GLY 976 n 200 GLY 976 X ASN 977 n 201 ASN 977 X SER 978 n 202 SER 978 X LEU 979 n 203 LEU 979 X THR 980 n 204 THR 980 X GLU 981 n 205 GLU 981 X GLY 982 n 206 GLY 982 X THR 983 n 207 THR 983 X LEU 984 n 208 LEU 984 X VAL 985 n 209 VAL 985 X GLY 986 n 210 GLY 986 X LEU 987 n 211 LEU 987 X ALA 988 n 212 ALA 988 X GLY 989 n 213 GLY 989 X LEU 990 n 214 LEU 990 X LYS 991 n 215 LYS 991 X LEU 992 n 216 LEU 992 X SER 993 n 217 SER 993 X GLN 994 n 218 GLN 994 X PRO 995 n 219 PRO 995 X LEU 996 n 220 LEU 996 X SER 997 n 221 SER 997 X ASP 998 n 222 ASP 998 X LYS 999 n 223 LYS 999 X ALA 1000 n 224 ALA 1000 X VAL 1001 n 225 VAL 1001 X LEU 1002 n 226 LEU 1002 X PHE 1003 n 227 PHE 1003 X ALA 1004 n 228 ALA 1004 X THR 1005 n 229 THR 1005 X ALA 1006 n 230 ALA 1006 X GLY 1007 n 231 GLY 1007 X VAL 1008 n 232 VAL 1008 X GLU 1009 n 233 GLU 1009 X ARG 1010 n 234 ARG 1010 X ASP 1011 n 235 ASP 1011 X LEU 1012 n 236 LEU 1012 X ASN 1013 n 237 ASN 1013 X GLY 1014 n 238 GLY 1014 X ARG 1015 n 239 ARG 1015 X ASP 1016 n 240 ASP 1016 X TYR 1017 n 241 TYR 1017 X THR 1018 n 242 THR 1018 X VAL 1019 n 243 VAL 1019 X THR 1020 n 244 THR 1020 X GLY 1021 n 245 GLY 1021 X n 246 1022 X n 247 1023 X n 248 1024 X n 249 1025 X n 250 1026 X n 251 1027 X n 252 1028 X n 253 1029 X n 254 1030 X n 255 1031 X n 256 1032 X n 257 1033 X n 258 1034 X n 259 1035 X n 260 1036 X n 261 1037 X n 262 1038 X PRO 1039 n 263 PRO 1039 X HIS 1040 n 264 HIS 1040 X THR 1041 n 265 THR 1041 X ARG 1042 n 266 ARG 1042 X LEU 1043 n 267 LEU 1043 X VAL 1044 n 268 VAL 1044 X ALA 1045 n 269 ALA 1045 X GLY 1046 n 270 GLY 1046 X LEU 1047 n 271 LEU 1047 X GLY 1048 n 272 GLY 1048 X ALA 1049 n 273 ALA 1049 X ASP 1050 n 274 ASP 1050 X VAL 1051 n 275 VAL 1051 X GLU 1052 n 276 GLU 1052 X PHE 1053 n 277 PHE 1053 X GLY 1054 n 278 GLY 1054 X ASN 1055 n 279 ASN 1055 X GLY 1056 n 280 GLY 1056 X TRP 1057 n 281 TRP 1057 X ASN 1058 n 282 ASN 1058 X GLY 1059 n 283 GLY 1059 X LEU 1060 n 284 LEU 1060 X ALA 1061 n 285 ALA 1061 X ARG 1062 n 286 ARG 1062 X TYR 1063 n 287 TYR 1063 X SER 1064 n 288 SER 1064 X TYR 1065 n 289 TYR 1065 X ALA 1066 n 290 ALA 1066 X GLY 1067 n 291 GLY 1067 X SER 1068 n 292 SER 1068 X LYS 1069 n 293 LYS 1069 X GLN 1070 n 294 GLN 1070 X TYR 1071 n 295 TYR 1071 X GLY 1072 n 296 GLY 1072 X ASN 1073 n 297 ASN 1073 X HIS 1074 n 298 HIS 1074 X SER 1075 n 299 SER 1075 X GLY 1076 n 300 GLY 1076 X ARG 1077 n 301 ARG 1077 X VAL 1078 n 302 VAL 1078 X GLY 1079 n 303 GLY 1079 X VAL 1080 n 304 VAL 1080 X GLY 1081 n 305 GLY 1081 X TYR 1082 n 306 TYR 1082 X ARG 1083 n 307 ARG 1083 X PHE 1084 n 308 PHE 1084 X 1.8795 -0.1156 -0.1926 1.3636 0.5546 3.3720 -0.0006 0.0024 -0.1172 0.0389 -0.0882 0.0422 0.3152 0.2484 0.0888 0.1301 0.0139 0.0035 0.1817 -0.1119 0.0700 refined 9.7940 18.8930 181.7910 X-RAY DIFFRACTION X 785 X 1084 X-RAY DIFFRACTION 1 X 2085 X 2085 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 X N THR 831 A N THR 55 X O GLY 1072 A O GLY 296 X N GLY 1081 A N GLY 305 X O ASN 1058 A O ASN 282 X N GLY 1067 A N GLY 291 X O LEU 1043 A O LEU 267 X N ASP 1050 A N ASP 274 X O VAL 1001 A O VAL 225 X N ARG 1010 A N ARG 234 X O GLY 986 A O GLY 210 X N SER 993 A N SER 217 X O ASP 948 A O ASP 172 X N LYS 961 A N LYS 185 X O THR 929 A O THR 153 X N GLY 938 A N GLY 162 X O TYR 898 A O TYR 122 X N SER 913 A N SER 137 X O ASN 877 A O ASN 101 X N ARG 890 A N ARG 114 X O THR 859 A O THR 83 X N SER 872 A N SER 96 X O LYS 840 A O LYS 64 1 X OG1 THR 817 A OG1 THR 41 1 Y 1 X CG2 THR 817 A CG2 THR 41 1 Y 1 X CG ASP 919 A CG ASP 143 1 Y 1 X OD1 ASP 919 A OD1 ASP 143 1 Y 1 X OD2 ASP 919 A OD2 ASP 143 1 Y 1 X CG1 VAL 941 A CG1 VAL 165 1 Y 1 X CG2 VAL 941 A CG2 VAL 165 1 Y 1 X OG1 THR 946 A OG1 THR 170 1 Y 1 X CG2 THR 946 A CG2 THR 170 1 Y 1 X CG LEU 972 A CG LEU 196 1 Y 1 X CD1 LEU 972 A CD1 LEU 196 1 Y 1 X CD2 LEU 972 A CD2 LEU 196 1 Y 1 X CD LYS 999 A CD LYS 223 1 Y 1 X CE LYS 999 A CE LYS 223 1 Y 1 X NZ LYS 999 A NZ LYS 223 1 Y 1 X CG ASN 1055 A CG ASN 279 1 Y 1 X OD1 ASN 1055 A OD1 ASN 279 1 Y 1 X ND2 ASN 1055 A ND2 ASN 279 1 Y 1 X CD ARG 1083 A CD ARG 307 1 Y 1 X NE ARG 1083 A NE ARG 307 1 Y 1 X CZ ARG 1083 A CZ ARG 307 1 Y 1 X NH1 ARG 1083 A NH1 ARG 307 1 Y 1 X NH2 ARG 1083 A NH2 ARG 307 1 Y 1 X ASP 777 A ASP 1 1 Y 1 X GLY 778 A GLY 2 1 Y 1 X VAL 779 A VAL 3 1 Y 1 X ARG 780 A ARG 4 1 Y 1 X ILE 781 A ILE 5 1 Y 1 X PHE 782 A PHE 6 1 Y 1 X ASN 783 A ASN 7 1 Y 1 X SER 784 A SER 8 1 Y 1 X LEU 785 A LEU 9 1 Y 1 X PHE 943 A PHE 167 1 Y 1 X ALA 944 A ALA 168 1 Y 1 X ALA 945 A ALA 169 1 Y 1 X GLY 1022 A GLY 246 1 Y 1 X PHE 1023 A PHE 247 1 Y 1 X THR 1024 A THR 248 1 Y 1 X GLY 1025 A GLY 249 1 Y 1 X ALA 1026 A ALA 250 1 Y 1 X THR 1027 A THR 251 1 Y 1 X ALA 1028 A ALA 252 1 Y 1 X ALA 1029 A ALA 253 1 Y 1 X THR 1030 A THR 254 1 Y 1 X GLY 1031 A GLY 255 1 Y 1 X LYS 1032 A LYS 256 1 Y 1 X THR 1033 A THR 257 1 Y 1 X GLY 1034 A GLY 258 1 Y 1 X ALA 1035 A ALA 259 1 Y 1 X ARG 1036 A ARG 260 1 Y 1 X ASN 1037 A ASN 261 1 Y 1 X MET 1038 A MET 262 1 Y 1 X CA THR 817 PLANAR 1 6.12 0.90 118.30 124.42 X X X CB CG OD2 ASP ASP ASP 792 792 792 N 1 6.54 0.90 118.30 124.84 X X X CB CG OD2 ASP ASP ASP 810 810 810 N 1 18.63 2.70 111.00 129.63 X X X N CA C THR THR THR 817 817 817 N 1 5.53 0.90 118.30 123.83 X X X CB CG OD2 ASP ASP ASP 828 828 828 N 1 6.13 0.90 118.30 124.43 X X X CB CG OD2 ASP ASP ASP 892 892 892 N 1 X THR 817 -33.64 -102.10 1 X LYS 853 -55.23 106.05 1 X SER 875 87.05 -3.78 1 X ALA 876 -173.30 143.09 1 X ALA 988 -171.50 144.72 1 X SER 997 -145.74 -158.42 1 X ALA 1049 -169.37 118.94 24.23 1.37000 0.68000 0.00000 1.37000 0.00000 -2.05000 0.914 0.893 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.285 0.228 0.231 2.60 30.00 565 10715 5.000 97.2 9.781 0.217 RANDOM LIKELY RESIDUAL 1 THROUGHOUT MAD 0.567 0.335 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.60 30.00 29 2080 36 0 2015 0.020 0.021 2078 0.002 0.020 1847 1.799 1.953 2794 1.066 3.000 4279 8.862 5.000 276 0.143 0.200 300 0.006 0.020 2394 0.003 0.020 432 0.202 0.200 306 0.264 0.200 2206 0.095 0.200 1488 0.144 0.200 56 0.164 0.200 13 0.197 0.200 60 0.806 1.500 1349 1.538 2.000 2097 2.429 3.000 729 4.102 4.500 697 0.3260 0.2250 2.67 41 670 20 2.600 30.000 1UYN 10715 2.000 0.06400 1 24.0000 9.100 98.5 0.19100 2.60 2.69 9.200 1 88.7 refinement REFMAC 5.1.19 data reduction DENZO data scaling SCALEPACK phasing SOLVE Translocator domain of autotransporter NalP from Neisseria meningitidis 1 N N 2 N N 3 N N 3 N N 4 N N X ALA 787 A ALA 11 HELX_P X GLY 811 A GLY 35 1 1 25 MEMBRANE PROTEIN AUTOTRANSPORTER, TRANSLOCATOR DOMAIN, MEMBRANE PROTEIN, OUTER MEMBRANE, BETA-DOMAIN, BETA-BARREL Q8GKS5 UNP 1 Q8GKS5 776 1083 1UYN 777 1084 Q8GKS5 X 1 1 308 12 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel X LEU 819 A LEU 43 X GLU 833 A GLU 57 X TYR 1071 A TYR 295 X PHE 1084 A PHE 308 X TRP 1057 A TRP 281 X SER 1068 A SER 292 X THR 1041 A THR 265 X GLY 1054 A GLY 278 X ALA 1000 A ALA 224 X ASP 1011 A ASP 235 X LEU 979 A LEU 203 X PRO 995 A PRO 219 X ASP 948 A ASP 172 X GLN 962 A GLN 186 X HIS 921 A HIS 145 X VAL 939 A VAL 163 X GLY 897 A GLY 121 X SER 915 A SER 139 X ALA 876 A ALA 100 X ALA 893 A ALA 117 X THR 858 A THR 82 X GLU 873 A GLU 97 X GLU 838 A GLU 62 X GLY 855 A GLY 79 BINDING SITE FOR RESIDUE SO4 X 2086 X SO4 2086 Software 2 BINDING SITE FOR RESIDUE SO4 X 2087 X SO4 2087 Software 4 BINDING SITE FOR RESIDUE CXE X 2085 X CXE 2085 Software 8 X HIS 1040 A HIS 264 2 1_555 X THR 1041 A THR 265 2 1_555 X GLY 855 A GLY 79 4 1_555 X GLU 856 A GLU 80 4 1_555 X ASN 857 A ASN 81 4 1_555 X THR 858 A THR 82 4 1_555 X GLN 846 A GLN 70 8 1_555 X VAL 848 A VAL 72 8 1_555 X LEU 864 A LEU 88 8 1_555 X LEU 899 A LEU 123 8 8_566 X GLY 954 A GLY 178 8 8_566 X GLY 986 A GLY 210 8 8_566 X LEU 987 A LEU 211 8 8_566 X VAL 1008 A VAL 232 8 8_566 178 P 61 2 2