0.011859
0.006847
0.000000
0.000000
0.013694
0.000000
0.000000
0.000000
0.005928
0.00000
0.00000
0.00000
Tahirov, T.H.
Inagaki, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
84.321
84.321
168.701
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H10 O6
178.140
2-KETO-3-DEOXYGLUCONATE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J. Mol. Biol.
JMOBAK
0070
0022-2836
340
477
489
10.1016/j.jmb.2004.04.074
15210349
Structure of Thermus thermophilus 2-Keto-3-deoxygluconate kinase: evidence for recognition of an open chain substrate.
2004
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
60
761
10.1107/S0907444904002665
15039578
Crystallization and Preliminary Crystallographic Analysis of 2-Keto-3-Deoxygluconate Kinase from Thermus Thermophilus.
2004
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
IMAGE PLATE
2003-03-15
RIGAKU IMAGE PLATE R-AXISV
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
BL26B1
SPring-8
1.00
SYNCHROTRON
SPRING-8 BEAMLINE BL26B1
33470.184
2-KETO-3-DEOXYGLUCONATE KINASE
2
man
polymer
178.140
2-KETO-3-DEOXYGLUCONATE
2
syn
non-polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
2
syn
non-polymer
18.015
water
211
nat
water
no
no
MLEVVTAGEPLVALVPQEPGHLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFR
RAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRV
SLDVNYRQTLWSPEEARGFLERALPGVDLLFLSEEEAELLFGRVEEALRALSAPEVVLKRGAKGAWAFVDGRRVEGSAFA
VEAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVAASRGDHEGAPYREDLEVLLKATQTFMR
MLEVVTAGEPLVALVPQEPGHLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFR
RAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRV
SLDVNYRQTLWSPEEARGFLERALPGVDLLFLSEEEAELLFGRVEEALRALSAPEVVLKRGAKGAWAFVDGRRVEGSAFA
VEAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVAASRGDHEGAPYREDLEVLLKATQTFMR
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HB8
sample
300852
THERMUS THERMOPHILUS
469008
ESCHERICHIA COLI
BL21(DE3)
PET11A
1
2.53
52.5
VAPOR DIFFUSION, SITTING DROP
8.50
VAPOUR-DIFFUSION SITTING DROP AT 298 K. 10.0 MG/ML OF PROTEIN SOLUTION CONTAINING 5 MM KDG AND 5 MM AMP-PNP WAS MIXED WITH RESERVOIR SOLUTION CONTAINING 0.35 M AMMONIUM SULFATE AND 0.1 M TRIS-HCL BUFFER, PH 8.5. BEFORE THE DATA COLLECTION THE CRYSTAL WAS SOAKED IN SOLUTION CONTAINING 0.35 M MAGNESIUM CHLORIDE INSTEAD OF AMMONIUM SULFATE. THE CRYOPROTECTANT CONTAINED 33% OF ETHYLENE GLYCOL IN ADDITION TO MAGNESIUM CHLORIDE, BUFFER AND LIGANDS
298
citation
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
struct_biol
repository
Initial release
Data collection
Database references
Derived calculations
Non-polymer description
Other
Refinement description
Version format compliance
Data collection
Database references
Experimental preparation
Other
1
0
2004-04-14
1
1
2015-04-15
1
2
2019-02-27
_citation.journal_abbrev
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.title
_exptl_crystal_grow.method
_exptl_crystal_grow.temp
_pdbx_database_status.recvd_author_approval
CRYSTAL STRUCTURE OF 2-KETO-3-DEOXYGLUCONATE KINASE (TM0067)FROM THERMOTOGA MARITIMA AT 2.3 A RESOLUTION
2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS
2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS WITH BOUND ATP
PDBE
Y
PDBE
2004-04-12
REL
KDG
2-KETO-3-DEOXYGLUCONATE
ADP
ADENOSINE-5'-DIPHOSPHATE
HOH
water
KDG
1302
2
KDG
KDG
1302
A
ADP
1303
3
ADP
ADP
1303
A
KDG
1302
2
KDG
KDG
1302
B
ADP
1303
3
ADP
ADP
1303
B
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2085
4
HOH
HOH
2085
A
HOH
2086
4
HOH
HOH
2086
A
HOH
2087
4
HOH
HOH
2087
A
HOH
2088
4
HOH
HOH
2088
A
HOH
2089
4
HOH
HOH
2089
A
HOH
2090
4
HOH
HOH
2090
A
HOH
2091
4
HOH
HOH
2091
A
HOH
2092
4
HOH
HOH
2092
A
HOH
2093
4
HOH
HOH
2093
A
HOH
2094
4
HOH
HOH
2094
A
HOH
2095
4
HOH
HOH
2095
A
HOH
2096
4
HOH
HOH
2096
A
HOH
2097
4
HOH
HOH
2097
A
HOH
2098
4
HOH
HOH
2098
A
HOH
2099
4
HOH
HOH
2099
A
HOH
2100
4
HOH
HOH
2100
A
HOH
2101
4
HOH
HOH
2101
A
HOH
2102
4
HOH
HOH
2102
A
HOH
2103
4
HOH
HOH
2103
A
HOH
2104
4
HOH
HOH
2104
A
HOH
2105
4
HOH
HOH
2105
A
HOH
2106
4
HOH
HOH
2106
A
HOH
2107
4
HOH
HOH
2107
A
HOH
2108
4
HOH
HOH
2108
A
HOH
2109
4
HOH
HOH
2109
A
HOH
2110
4
HOH
HOH
2110
A
HOH
2111
4
HOH
HOH
2111
A
HOH
2112
4
HOH
HOH
2112
A
HOH
2113
4
HOH
HOH
2113
A
HOH
2114
4
HOH
HOH
2114
A
HOH
2115
4
HOH
HOH
2115
A
HOH
2116
4
HOH
HOH
2116
A
HOH
2117
4
HOH
HOH
2117
A
HOH
2118
4
HOH
HOH
2118
A
HOH
2119
4
HOH
HOH
2119
A
HOH
2120
4
HOH
HOH
2120
A
HOH
2001
4
HOH
HOH
2001
B
HOH
2002
4
HOH
HOH
2002
B
HOH
2003
4
HOH
HOH
2003
B
HOH
2004
4
HOH
HOH
2004
B
HOH
2005
4
HOH
HOH
2005
B
HOH
2006
4
HOH
HOH
2006
B
HOH
2007
4
HOH
HOH
2007
B
HOH
2008
4
HOH
HOH
2008
B
HOH
2009
4
HOH
HOH
2009
B
HOH
2010
4
HOH
HOH
2010
B
HOH
2011
4
HOH
HOH
2011
B
HOH
2012
4
HOH
HOH
2012
B
HOH
2013
4
HOH
HOH
2013
B
HOH
2014
4
HOH
HOH
2014
B
HOH
2015
4
HOH
HOH
2015
B
HOH
2016
4
HOH
HOH
2016
B
HOH
2017
4
HOH
HOH
2017
B
HOH
2018
4
HOH
HOH
2018
B
HOH
2019
4
HOH
HOH
2019
B
HOH
2020
4
HOH
HOH
2020
B
HOH
2021
4
HOH
HOH
2021
B
HOH
2022
4
HOH
HOH
2022
B
HOH
2023
4
HOH
HOH
2023
B
HOH
2024
4
HOH
HOH
2024
B
HOH
2025
4
HOH
HOH
2025
B
HOH
2026
4
HOH
HOH
2026
B
HOH
2027
4
HOH
HOH
2027
B
HOH
2028
4
HOH
HOH
2028
B
HOH
2029
4
HOH
HOH
2029
B
HOH
2030
4
HOH
HOH
2030
B
HOH
2031
4
HOH
HOH
2031
B
HOH
2032
4
HOH
HOH
2032
B
HOH
2033
4
HOH
HOH
2033
B
HOH
2034
4
HOH
HOH
2034
B
HOH
2035
4
HOH
HOH
2035
B
HOH
2036
4
HOH
HOH
2036
B
HOH
2037
4
HOH
HOH
2037
B
HOH
2038
4
HOH
HOH
2038
B
HOH
2039
4
HOH
HOH
2039
B
HOH
2040
4
HOH
HOH
2040
B
HOH
2041
4
HOH
HOH
2041
B
HOH
2042
4
HOH
HOH
2042
B
HOH
2043
4
HOH
HOH
2043
B
HOH
2044
4
HOH
HOH
2044
B
HOH
2045
4
HOH
HOH
2045
B
HOH
2046
4
HOH
HOH
2046
B
HOH
2047
4
HOH
HOH
2047
B
HOH
2048
4
HOH
HOH
2048
B
HOH
2049
4
HOH
HOH
2049
B
HOH
2050
4
HOH
HOH
2050
B
HOH
2051
4
HOH
HOH
2051
B
HOH
2052
4
HOH
HOH
2052
B
HOH
2053
4
HOH
HOH
2053
B
HOH
2054
4
HOH
HOH
2054
B
HOH
2055
4
HOH
HOH
2055
B
HOH
2056
4
HOH
HOH
2056
B
HOH
2057
4
HOH
HOH
2057
B
HOH
2058
4
HOH
HOH
2058
B
HOH
2059
4
HOH
HOH
2059
B
HOH
2060
4
HOH
HOH
2060
B
HOH
2061
4
HOH
HOH
2061
B
HOH
2062
4
HOH
HOH
2062
B
HOH
2063
4
HOH
HOH
2063
B
HOH
2064
4
HOH
HOH
2064
B
HOH
2065
4
HOH
HOH
2065
B
HOH
2066
4
HOH
HOH
2066
B
HOH
2067
4
HOH
HOH
2067
B
HOH
2068
4
HOH
HOH
2068
B
HOH
2069
4
HOH
HOH
2069
B
HOH
2070
4
HOH
HOH
2070
B
HOH
2071
4
HOH
HOH
2071
B
HOH
2072
4
HOH
HOH
2072
B
HOH
2073
4
HOH
HOH
2073
B
HOH
2074
4
HOH
HOH
2074
B
HOH
2075
4
HOH
HOH
2075
B
HOH
2076
4
HOH
HOH
2076
B
HOH
2077
4
HOH
HOH
2077
B
HOH
2078
4
HOH
HOH
2078
B
HOH
2079
4
HOH
HOH
2079
B
HOH
2080
4
HOH
HOH
2080
B
HOH
2081
4
HOH
HOH
2081
B
HOH
2082
4
HOH
HOH
2082
B
HOH
2083
4
HOH
HOH
2083
B
HOH
2084
4
HOH
HOH
2084
B
HOH
2085
4
HOH
HOH
2085
B
HOH
2086
4
HOH
HOH
2086
B
HOH
2087
4
HOH
HOH
2087
B
HOH
2088
4
HOH
HOH
2088
B
HOH
2089
4
HOH
HOH
2089
B
HOH
2090
4
HOH
HOH
2090
B
HOH
2091
4
HOH
HOH
2091
B
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
GLU
3
n
3
GLU
3
A
VAL
4
n
4
VAL
4
A
VAL
5
n
5
VAL
5
A
THR
6
n
6
THR
6
A
ALA
7
n
7
ALA
7
A
GLY
8
n
8
GLY
8
A
GLU
9
n
9
GLU
9
A
PRO
10
n
10
PRO
10
A
LEU
11
n
11
LEU
11
A
VAL
12
n
12
VAL
12
A
ALA
13
n
13
ALA
13
A
LEU
14
n
14
LEU
14
A
VAL
15
n
15
VAL
15
A
PRO
16
n
16
PRO
16
A
GLN
17
n
17
GLN
17
A
GLU
18
n
18
GLU
18
A
PRO
19
n
19
PRO
19
A
GLY
20
n
20
GLY
20
A
HIS
21
n
21
HIS
21
A
LEU
22
n
22
LEU
22
A
ARG
23
n
23
ARG
23
A
GLY
24
n
24
GLY
24
A
LYS
25
n
25
LYS
25
A
ARG
26
n
26
ARG
26
A
LEU
27
n
27
LEU
27
A
LEU
28
n
28
LEU
28
A
GLU
29
n
29
GLU
29
A
VAL
30
n
30
VAL
30
A
TYR
31
n
31
TYR
31
A
VAL
32
n
32
VAL
32
A
GLY
33
n
33
GLY
33
A
GLY
34
n
34
GLY
34
A
ALA
35
n
35
ALA
35
A
GLU
36
n
36
GLU
36
A
VAL
37
n
37
VAL
37
A
ASN
38
n
38
ASN
38
A
VAL
39
n
39
VAL
39
A
ALA
40
n
40
ALA
40
A
VAL
41
n
41
VAL
41
A
ALA
42
n
42
ALA
42
A
LEU
43
n
43
LEU
43
A
ALA
44
n
44
ALA
44
A
ARG
45
n
45
ARG
45
A
LEU
46
n
46
LEU
46
A
GLY
47
n
47
GLY
47
A
VAL
48
n
48
VAL
48
A
LYS
49
n
49
LYS
49
A
VAL
50
n
50
VAL
50
A
GLY
51
n
51
GLY
51
A
PHE
52
n
52
PHE
52
A
VAL
53
n
53
VAL
53
A
GLY
54
n
54
GLY
54
A
ARG
55
n
55
ARG
55
A
VAL
56
n
56
VAL
56
A
GLY
57
n
57
GLY
57
A
GLU
58
n
58
GLU
58
A
ASP
59
n
59
ASP
59
A
GLU
60
n
60
GLU
60
A
LEU
61
n
61
LEU
61
A
GLY
62
n
62
GLY
62
A
ALA
63
n
63
ALA
63
A
MET
64
n
64
MET
64
A
VAL
65
n
65
VAL
65
A
GLU
66
n
66
GLU
66
A
GLU
67
n
67
GLU
67
A
ARG
68
n
68
ARG
68
A
LEU
69
n
69
LEU
69
A
ARG
70
n
70
ARG
70
A
ALA
71
n
71
ALA
71
A
GLU
72
n
72
GLU
72
A
GLY
73
n
73
GLY
73
A
VAL
74
n
74
VAL
74
A
ASP
75
n
75
ASP
75
A
LEU
76
n
76
LEU
76
A
THR
77
n
77
THR
77
A
HIS
78
n
78
HIS
78
A
PHE
79
n
79
PHE
79
A
ARG
80
n
80
ARG
80
A
ARG
81
n
81
ARG
81
A
ALA
82
n
82
ALA
82
A
PRO
83
n
83
PRO
83
A
GLY
84
n
84
GLY
84
A
PHE
85
n
85
PHE
85
A
THR
86
n
86
THR
86
A
GLY
87
n
87
GLY
87
A
LEU
88
n
88
LEU
88
A
TYR
89
n
89
TYR
89
A
LEU
90
n
90
LEU
90
A
ARG
91
n
91
ARG
91
A
GLU
92
n
92
GLU
92
A
TYR
93
n
93
TYR
93
A
LEU
94
n
94
LEU
94
A
PRO
95
n
95
PRO
95
A
LEU
96
n
96
LEU
96
A
GLY
97
n
97
GLY
97
A
GLN
98
n
98
GLN
98
A
GLY
99
n
99
GLY
99
A
ARG
100
n
100
ARG
100
A
VAL
101
n
101
VAL
101
A
PHE
102
n
102
PHE
102
A
TYR
103
n
103
TYR
103
A
TYR
104
n
104
TYR
104
A
ARG
105
n
105
ARG
105
A
LYS
106
n
106
LYS
106
A
GLY
107
n
107
GLY
107
A
SER
108
n
108
SER
108
A
ALA
109
n
109
ALA
109
A
GLY
110
n
110
GLY
110
A
SER
111
n
111
SER
111
A
ALA
112
n
112
ALA
112
A
LEU
113
n
113
LEU
113
A
ALA
114
n
114
ALA
114
A
PRO
115
n
115
PRO
115
A
GLY
116
n
116
GLY
116
A
ALA
117
n
117
ALA
117
A
PHE
118
n
118
PHE
118
A
ASP
119
n
119
ASP
119
A
PRO
120
n
120
PRO
120
A
ASP
121
n
121
ASP
121
A
TYR
122
n
122
TYR
122
A
LEU
123
n
123
LEU
123
A
GLU
124
n
124
GLU
124
A
GLY
125
n
125
GLY
125
A
VAL
126
n
126
VAL
126
A
ARG
127
n
127
ARG
127
A
PHE
128
n
128
PHE
128
A
LEU
129
n
129
LEU
129
A
HIS
130
n
130
HIS
130
A
LEU
131
n
131
LEU
131
A
SER
132
n
132
SER
132
A
GLY
133
n
133
GLY
133
A
ILE
134
n
134
ILE
134
A
THR
135
n
135
THR
135
A
PRO
136
n
136
PRO
136
A
ALA
137
n
137
ALA
137
A
LEU
138
n
138
LEU
138
A
SER
139
n
139
SER
139
A
PRO
140
n
140
PRO
140
A
GLU
141
n
141
GLU
141
A
ALA
142
n
142
ALA
142
A
ARG
143
n
143
ARG
143
A
ALA
144
n
144
ALA
144
A
PHE
145
n
145
PHE
145
A
SER
146
n
146
SER
146
A
LEU
147
n
147
LEU
147
A
TRP
148
n
148
TRP
148
A
ALA
149
n
149
ALA
149
A
MET
150
n
150
MET
150
A
GLU
151
n
151
GLU
151
A
GLU
152
n
152
GLU
152
A
ALA
153
n
153
ALA
153
A
LYS
154
n
154
LYS
154
A
ARG
155
n
155
ARG
155
A
ARG
156
n
156
ARG
156
A
GLY
157
n
157
GLY
157
A
VAL
158
n
158
VAL
158
A
ARG
159
n
159
ARG
159
A
VAL
160
n
160
VAL
160
A
SER
161
n
161
SER
161
A
LEU
162
n
162
LEU
162
A
ASP
163
n
163
ASP
163
A
VAL
164
n
164
VAL
164
A
ASN
165
n
165
ASN
165
A
TYR
166
n
166
TYR
166
A
ARG
167
n
167
ARG
167
A
GLN
168
n
168
GLN
168
A
THR
169
n
169
THR
169
A
LEU
170
n
170
LEU
170
A
TRP
171
n
171
TRP
171
A
SER
172
n
172
SER
172
A
PRO
173
n
173
PRO
173
A
GLU
174
n
174
GLU
174
A
GLU
175
n
175
GLU
175
A
ALA
176
n
176
ALA
176
A
ARG
177
n
177
ARG
177
A
GLY
178
n
178
GLY
178
A
PHE
179
n
179
PHE
179
A
LEU
180
n
180
LEU
180
A
GLU
181
n
181
GLU
181
A
ARG
182
n
182
ARG
182
A
ALA
183
n
183
ALA
183
A
LEU
184
n
184
LEU
184
A
PRO
185
n
185
PRO
185
A
GLY
186
n
186
GLY
186
A
VAL
187
n
187
VAL
187
A
ASP
188
n
188
ASP
188
A
LEU
189
n
189
LEU
189
A
LEU
190
n
190
LEU
190
A
PHE
191
n
191
PHE
191
A
LEU
192
n
192
LEU
192
A
SER
193
n
193
SER
193
A
GLU
194
n
194
GLU
194
A
GLU
195
n
195
GLU
195
A
GLU
196
n
196
GLU
196
A
ALA
197
n
197
ALA
197
A
GLU
198
n
198
GLU
198
A
LEU
199
n
199
LEU
199
A
LEU
200
n
200
LEU
200
A
PHE
201
n
201
PHE
201
A
GLY
202
n
202
GLY
202
A
ARG
203
n
203
ARG
203
A
VAL
204
n
204
VAL
204
A
GLU
205
n
205
GLU
205
A
GLU
206
n
206
GLU
206
A
ALA
207
n
207
ALA
207
A
LEU
208
n
208
LEU
208
A
ARG
209
n
209
ARG
209
A
ALA
210
n
210
ALA
210
A
LEU
211
n
211
LEU
211
A
SER
212
n
212
SER
212
A
ALA
213
n
213
ALA
213
A
PRO
214
n
214
PRO
214
A
GLU
215
n
215
GLU
215
A
VAL
216
n
216
VAL
216
A
VAL
217
n
217
VAL
217
A
LEU
218
n
218
LEU
218
A
LYS
219
n
219
LYS
219
A
ARG
220
n
220
ARG
220
A
GLY
221
n
221
GLY
221
A
ALA
222
n
222
ALA
222
A
LYS
223
n
223
LYS
223
A
GLY
224
n
224
GLY
224
A
ALA
225
n
225
ALA
225
A
TRP
226
n
226
TRP
226
A
ALA
227
n
227
ALA
227
A
PHE
228
n
228
PHE
228
A
VAL
229
n
229
VAL
229
A
ASP
230
n
230
ASP
230
A
GLY
231
n
231
GLY
231
A
ARG
232
n
232
ARG
232
A
ARG
233
n
233
ARG
233
A
VAL
234
n
234
VAL
234
A
GLU
235
n
235
GLU
235
A
GLY
236
n
236
GLY
236
A
SER
237
n
237
SER
237
A
ALA
238
n
238
ALA
238
A
PHE
239
n
239
PHE
239
A
ALA
240
n
240
ALA
240
A
VAL
241
n
241
VAL
241
A
GLU
242
n
242
GLU
242
A
ALA
243
n
243
ALA
243
A
VAL
244
n
244
VAL
244
A
ASP
245
n
245
ASP
245
A
PRO
246
n
246
PRO
246
A
VAL
247
n
247
VAL
247
A
GLY
248
n
248
GLY
248
A
ALA
249
n
249
ALA
249
A
GLY
250
n
250
GLY
250
A
ASP
251
n
251
ASP
251
A
ALA
252
n
252
ALA
252
A
PHE
253
n
253
PHE
253
A
ALA
254
n
254
ALA
254
A
ALA
255
n
255
ALA
255
A
GLY
256
n
256
GLY
256
A
TYR
257
n
257
TYR
257
A
LEU
258
n
258
LEU
258
A
ALA
259
n
259
ALA
259
A
GLY
260
n
260
GLY
260
A
ALA
261
n
261
ALA
261
A
VAL
262
n
262
VAL
262
A
TRP
263
n
263
TRP
263
A
GLY
264
n
264
GLY
264
A
LEU
265
n
265
LEU
265
A
PRO
266
n
266
PRO
266
A
VAL
267
n
267
VAL
267
A
GLU
268
n
268
GLU
268
A
GLU
269
n
269
GLU
269
A
ARG
270
n
270
ARG
270
A
LEU
271
n
271
LEU
271
A
ARG
272
n
272
ARG
272
A
LEU
273
n
273
LEU
273
A
ALA
274
n
274
ALA
274
A
ASN
275
n
275
ASN
275
A
LEU
276
n
276
LEU
276
A
LEU
277
n
277
LEU
277
A
GLY
278
n
278
GLY
278
A
ALA
279
n
279
ALA
279
A
SER
280
n
280
SER
280
A
VAL
281
n
281
VAL
281
A
ALA
282
n
282
ALA
282
A
ALA
283
n
283
ALA
283
A
SER
284
n
284
SER
284
A
ARG
285
n
285
ARG
285
A
GLY
286
n
286
GLY
286
A
ASP
287
n
287
ASP
287
A
HIS
288
n
288
HIS
288
A
GLU
289
n
289
GLU
289
A
GLY
290
n
290
GLY
290
A
ALA
291
n
291
ALA
291
A
PRO
292
n
292
PRO
292
A
TYR
293
n
293
TYR
293
A
ARG
294
n
294
ARG
294
A
GLU
295
n
295
GLU
295
A
ASP
296
n
296
ASP
296
A
LEU
297
n
297
LEU
297
A
GLU
298
n
298
GLU
298
A
VAL
299
n
299
VAL
299
A
LEU
300
n
300
LEU
300
A
LEU
301
n
301
LEU
301
A
LYS
302
n
302
LYS
302
A
n
303
303
A
n
304
304
A
n
305
305
A
n
306
306
A
n
307
307
A
n
308
308
A
n
309
309
A
MET
1
n
1
MET
1
B
LEU
2
n
2
LEU
2
B
GLU
3
n
3
GLU
3
B
VAL
4
n
4
VAL
4
B
VAL
5
n
5
VAL
5
B
THR
6
n
6
THR
6
B
ALA
7
n
7
ALA
7
B
GLY
8
n
8
GLY
8
B
GLU
9
n
9
GLU
9
B
PRO
10
n
10
PRO
10
B
LEU
11
n
11
LEU
11
B
VAL
12
n
12
VAL
12
B
ALA
13
n
13
ALA
13
B
LEU
14
n
14
LEU
14
B
VAL
15
n
15
VAL
15
B
PRO
16
n
16
PRO
16
B
GLN
17
n
17
GLN
17
B
GLU
18
n
18
GLU
18
B
PRO
19
n
19
PRO
19
B
GLY
20
n
20
GLY
20
B
HIS
21
n
21
HIS
21
B
LEU
22
n
22
LEU
22
B
ARG
23
n
23
ARG
23
B
GLY
24
n
24
GLY
24
B
LYS
25
n
25
LYS
25
B
ARG
26
n
26
ARG
26
B
LEU
27
n
27
LEU
27
B
LEU
28
n
28
LEU
28
B
GLU
29
n
29
GLU
29
B
VAL
30
n
30
VAL
30
B
TYR
31
n
31
TYR
31
B
VAL
32
n
32
VAL
32
B
GLY
33
n
33
GLY
33
B
GLY
34
n
34
GLY
34
B
ALA
35
n
35
ALA
35
B
GLU
36
n
36
GLU
36
B
VAL
37
n
37
VAL
37
B
ASN
38
n
38
ASN
38
B
VAL
39
n
39
VAL
39
B
ALA
40
n
40
ALA
40
B
VAL
41
n
41
VAL
41
B
ALA
42
n
42
ALA
42
B
LEU
43
n
43
LEU
43
B
ALA
44
n
44
ALA
44
B
ARG
45
n
45
ARG
45
B
LEU
46
n
46
LEU
46
B
GLY
47
n
47
GLY
47
B
VAL
48
n
48
VAL
48
B
LYS
49
n
49
LYS
49
B
VAL
50
n
50
VAL
50
B
GLY
51
n
51
GLY
51
B
PHE
52
n
52
PHE
52
B
VAL
53
n
53
VAL
53
B
GLY
54
n
54
GLY
54
B
ARG
55
n
55
ARG
55
B
VAL
56
n
56
VAL
56
B
GLY
57
n
57
GLY
57
B
GLU
58
n
58
GLU
58
B
ASP
59
n
59
ASP
59
B
GLU
60
n
60
GLU
60
B
LEU
61
n
61
LEU
61
B
GLY
62
n
62
GLY
62
B
ALA
63
n
63
ALA
63
B
MET
64
n
64
MET
64
B
VAL
65
n
65
VAL
65
B
GLU
66
n
66
GLU
66
B
GLU
67
n
67
GLU
67
B
ARG
68
n
68
ARG
68
B
LEU
69
n
69
LEU
69
B
ARG
70
n
70
ARG
70
B
ALA
71
n
71
ALA
71
B
GLU
72
n
72
GLU
72
B
GLY
73
n
73
GLY
73
B
VAL
74
n
74
VAL
74
B
ASP
75
n
75
ASP
75
B
LEU
76
n
76
LEU
76
B
THR
77
n
77
THR
77
B
HIS
78
n
78
HIS
78
B
PHE
79
n
79
PHE
79
B
ARG
80
n
80
ARG
80
B
ARG
81
n
81
ARG
81
B
ALA
82
n
82
ALA
82
B
PRO
83
n
83
PRO
83
B
GLY
84
n
84
GLY
84
B
PHE
85
n
85
PHE
85
B
THR
86
n
86
THR
86
B
GLY
87
n
87
GLY
87
B
LEU
88
n
88
LEU
88
B
TYR
89
n
89
TYR
89
B
LEU
90
n
90
LEU
90
B
ARG
91
n
91
ARG
91
B
GLU
92
n
92
GLU
92
B
TYR
93
n
93
TYR
93
B
LEU
94
n
94
LEU
94
B
PRO
95
n
95
PRO
95
B
LEU
96
n
96
LEU
96
B
GLY
97
n
97
GLY
97
B
GLN
98
n
98
GLN
98
B
GLY
99
n
99
GLY
99
B
ARG
100
n
100
ARG
100
B
VAL
101
n
101
VAL
101
B
PHE
102
n
102
PHE
102
B
TYR
103
n
103
TYR
103
B
TYR
104
n
104
TYR
104
B
ARG
105
n
105
ARG
105
B
LYS
106
n
106
LYS
106
B
GLY
107
n
107
GLY
107
B
SER
108
n
108
SER
108
B
ALA
109
n
109
ALA
109
B
GLY
110
n
110
GLY
110
B
SER
111
n
111
SER
111
B
ALA
112
n
112
ALA
112
B
LEU
113
n
113
LEU
113
B
ALA
114
n
114
ALA
114
B
PRO
115
n
115
PRO
115
B
GLY
116
n
116
GLY
116
B
ALA
117
n
117
ALA
117
B
PHE
118
n
118
PHE
118
B
ASP
119
n
119
ASP
119
B
PRO
120
n
120
PRO
120
B
ASP
121
n
121
ASP
121
B
TYR
122
n
122
TYR
122
B
LEU
123
n
123
LEU
123
B
GLU
124
n
124
GLU
124
B
GLY
125
n
125
GLY
125
B
VAL
126
n
126
VAL
126
B
ARG
127
n
127
ARG
127
B
PHE
128
n
128
PHE
128
B
LEU
129
n
129
LEU
129
B
HIS
130
n
130
HIS
130
B
LEU
131
n
131
LEU
131
B
SER
132
n
132
SER
132
B
GLY
133
n
133
GLY
133
B
ILE
134
n
134
ILE
134
B
THR
135
n
135
THR
135
B
PRO
136
n
136
PRO
136
B
ALA
137
n
137
ALA
137
B
LEU
138
n
138
LEU
138
B
SER
139
n
139
SER
139
B
PRO
140
n
140
PRO
140
B
GLU
141
n
141
GLU
141
B
ALA
142
n
142
ALA
142
B
ARG
143
n
143
ARG
143
B
ALA
144
n
144
ALA
144
B
PHE
145
n
145
PHE
145
B
SER
146
n
146
SER
146
B
LEU
147
n
147
LEU
147
B
TRP
148
n
148
TRP
148
B
ALA
149
n
149
ALA
149
B
MET
150
n
150
MET
150
B
GLU
151
n
151
GLU
151
B
GLU
152
n
152
GLU
152
B
ALA
153
n
153
ALA
153
B
LYS
154
n
154
LYS
154
B
ARG
155
n
155
ARG
155
B
ARG
156
n
156
ARG
156
B
GLY
157
n
157
GLY
157
B
VAL
158
n
158
VAL
158
B
ARG
159
n
159
ARG
159
B
VAL
160
n
160
VAL
160
B
SER
161
n
161
SER
161
B
LEU
162
n
162
LEU
162
B
ASP
163
n
163
ASP
163
B
VAL
164
n
164
VAL
164
B
ASN
165
n
165
ASN
165
B
TYR
166
n
166
TYR
166
B
ARG
167
n
167
ARG
167
B
GLN
168
n
168
GLN
168
B
THR
169
n
169
THR
169
B
LEU
170
n
170
LEU
170
B
TRP
171
n
171
TRP
171
B
SER
172
n
172
SER
172
B
PRO
173
n
173
PRO
173
B
GLU
174
n
174
GLU
174
B
GLU
175
n
175
GLU
175
B
ALA
176
n
176
ALA
176
B
ARG
177
n
177
ARG
177
B
GLY
178
n
178
GLY
178
B
PHE
179
n
179
PHE
179
B
LEU
180
n
180
LEU
180
B
GLU
181
n
181
GLU
181
B
ARG
182
n
182
ARG
182
B
ALA
183
n
183
ALA
183
B
LEU
184
n
184
LEU
184
B
PRO
185
n
185
PRO
185
B
GLY
186
n
186
GLY
186
B
VAL
187
n
187
VAL
187
B
ASP
188
n
188
ASP
188
B
LEU
189
n
189
LEU
189
B
LEU
190
n
190
LEU
190
B
PHE
191
n
191
PHE
191
B
LEU
192
n
192
LEU
192
B
SER
193
n
193
SER
193
B
GLU
194
n
194
GLU
194
B
GLU
195
n
195
GLU
195
B
GLU
196
n
196
GLU
196
B
ALA
197
n
197
ALA
197
B
GLU
198
n
198
GLU
198
B
LEU
199
n
199
LEU
199
B
LEU
200
n
200
LEU
200
B
PHE
201
n
201
PHE
201
B
GLY
202
n
202
GLY
202
B
ARG
203
n
203
ARG
203
B
VAL
204
n
204
VAL
204
B
GLU
205
n
205
GLU
205
B
GLU
206
n
206
GLU
206
B
ALA
207
n
207
ALA
207
B
LEU
208
n
208
LEU
208
B
ARG
209
n
209
ARG
209
B
ALA
210
n
210
ALA
210
B
LEU
211
n
211
LEU
211
B
SER
212
n
212
SER
212
B
ALA
213
n
213
ALA
213
B
PRO
214
n
214
PRO
214
B
GLU
215
n
215
GLU
215
B
VAL
216
n
216
VAL
216
B
VAL
217
n
217
VAL
217
B
LEU
218
n
218
LEU
218
B
LYS
219
n
219
LYS
219
B
ARG
220
n
220
ARG
220
B
GLY
221
n
221
GLY
221
B
ALA
222
n
222
ALA
222
B
LYS
223
n
223
LYS
223
B
GLY
224
n
224
GLY
224
B
ALA
225
n
225
ALA
225
B
TRP
226
n
226
TRP
226
B
ALA
227
n
227
ALA
227
B
PHE
228
n
228
PHE
228
B
VAL
229
n
229
VAL
229
B
ASP
230
n
230
ASP
230
B
GLY
231
n
231
GLY
231
B
ARG
232
n
232
ARG
232
B
ARG
233
n
233
ARG
233
B
VAL
234
n
234
VAL
234
B
GLU
235
n
235
GLU
235
B
GLY
236
n
236
GLY
236
B
SER
237
n
237
SER
237
B
ALA
238
n
238
ALA
238
B
PHE
239
n
239
PHE
239
B
ALA
240
n
240
ALA
240
B
VAL
241
n
241
VAL
241
B
GLU
242
n
242
GLU
242
B
ALA
243
n
243
ALA
243
B
VAL
244
n
244
VAL
244
B
ASP
245
n
245
ASP
245
B
PRO
246
n
246
PRO
246
B
VAL
247
n
247
VAL
247
B
GLY
248
n
248
GLY
248
B
ALA
249
n
249
ALA
249
B
GLY
250
n
250
GLY
250
B
ASP
251
n
251
ASP
251
B
ALA
252
n
252
ALA
252
B
PHE
253
n
253
PHE
253
B
ALA
254
n
254
ALA
254
B
ALA
255
n
255
ALA
255
B
GLY
256
n
256
GLY
256
B
TYR
257
n
257
TYR
257
B
LEU
258
n
258
LEU
258
B
ALA
259
n
259
ALA
259
B
GLY
260
n
260
GLY
260
B
ALA
261
n
261
ALA
261
B
VAL
262
n
262
VAL
262
B
TRP
263
n
263
TRP
263
B
GLY
264
n
264
GLY
264
B
LEU
265
n
265
LEU
265
B
PRO
266
n
266
PRO
266
B
VAL
267
n
267
VAL
267
B
GLU
268
n
268
GLU
268
B
GLU
269
n
269
GLU
269
B
ARG
270
n
270
ARG
270
B
LEU
271
n
271
LEU
271
B
ARG
272
n
272
ARG
272
B
LEU
273
n
273
LEU
273
B
ALA
274
n
274
ALA
274
B
ASN
275
n
275
ASN
275
B
LEU
276
n
276
LEU
276
B
LEU
277
n
277
LEU
277
B
GLY
278
n
278
GLY
278
B
ALA
279
n
279
ALA
279
B
SER
280
n
280
SER
280
B
VAL
281
n
281
VAL
281
B
ALA
282
n
282
ALA
282
B
ALA
283
n
283
ALA
283
B
SER
284
n
284
SER
284
B
ARG
285
n
285
ARG
285
B
GLY
286
n
286
GLY
286
B
ASP
287
n
287
ASP
287
B
HIS
288
n
288
HIS
288
B
GLU
289
n
289
GLU
289
B
GLY
290
n
290
GLY
290
B
ALA
291
n
291
ALA
291
B
PRO
292
n
292
PRO
292
B
TYR
293
n
293
TYR
293
B
ARG
294
n
294
ARG
294
B
GLU
295
n
295
GLU
295
B
ASP
296
n
296
ASP
296
B
LEU
297
n
297
LEU
297
B
GLU
298
n
298
GLU
298
B
VAL
299
n
299
VAL
299
B
LEU
300
n
300
LEU
300
B
LEU
301
n
301
LEU
301
B
LYS
302
n
302
LYS
302
B
n
303
303
B
n
304
304
B
n
305
305
B
n
306
306
B
n
307
307
B
n
308
308
B
n
309
309
B
author_and_software_defined_assembly
PQS
6
hexameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_665
-x+y+1,-x+1,z
crystal symmetry operation
42.1605000000
73.0241280725
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-y+1,x-y,z
crystal symmetry operation
84.3210000000
0.0000000000
0.0000000000
A
N
ARG
80
A
N
ARG
80
A
O
GLY
54
A
O
GLY
54
A
N
GLY
51
A
N
GLY
51
A
O
VAL
4
A
O
VAL
4
A
N
VAL
5
A
N
VAL
5
A
O
PHE
128
A
O
PHE
128
A
N
LEU
129
A
N
LEU
129
A
O
ARG
159
A
O
ARG
159
A
N
LEU
162
A
N
LEU
162
A
O
LEU
189
A
O
LEU
189
A
N
LEU
190
A
N
LEU
190
A
O
GLU
215
A
O
GLU
215
A
N
LEU
218
A
N
LEU
218
A
O
TRP
226
A
O
TRP
226
A
N
VAL
229
A
N
VAL
229
A
O
ARG
232
A
O
ARG
232
A
N
TYR
104
A
N
TYR
104
A
O
LEU
88
A
O
LEU
88
A
N
TYR
89
A
N
TYR
89
A
O
VAL
12
A
O
VAL
12
A
N
VAL
15
A
N
VAL
15
A
O
GLU
29
A
O
GLU
29
A
N
LEU
28
A
N
LEU
28
B
O
LEU
28
B
O
LEU
28
B
N
GLY
33
B
N
GLY
33
B
O
LEU
11
B
O
LEU
11
B
N
LEU
14
B
N
LEU
14
B
O
TYR
89
B
O
TYR
89
B
N
GLU
92
B
N
GLU
92
B
O
ARG
100
B
O
ARG
100
B
N
THR
6
B
N
THR
6
B
O
GLY
51
B
O
GLY
51
B
N
VAL
56
B
N
VAL
56
B
O
ARG
80
B
O
ARG
80
B
N
LEU
131
B
N
LEU
131
B
O
SER
161
B
O
SER
161
B
N
LEU
162
B
N
LEU
162
B
O
LEU
189
B
O
LEU
189
B
N
LEU
190
B
N
LEU
190
B
O
GLU
215
B
O
GLU
215
B
N
LEU
218
B
N
LEU
218
B
O
TRP
226
B
O
TRP
226
B
N
VAL
229
B
N
VAL
229
B
O
ARG
232
B
O
ARG
232
1
A
CA
LYS
302
A
CA
LYS
302
1
Y
1
A
C
LYS
302
A
C
LYS
302
1
Y
1
A
O
LYS
302
A
O
LYS
302
1
Y
1
A
CB
LYS
302
A
CB
LYS
302
1
Y
1
A
CG
LYS
302
A
CG
LYS
302
1
Y
1
A
CD
LYS
302
A
CD
LYS
302
1
Y
1
A
CE
LYS
302
A
CE
LYS
302
1
Y
1
A
NZ
LYS
302
A
NZ
LYS
302
1
Y
1
B
CA
LYS
302
B
CA
LYS
302
1
Y
1
B
C
LYS
302
B
C
LYS
302
1
Y
1
B
O
LYS
302
B
O
LYS
302
1
Y
1
B
CB
LYS
302
B
CB
LYS
302
1
Y
1
B
CG
LYS
302
B
CG
LYS
302
1
Y
1
B
CD
LYS
302
B
CD
LYS
302
1
Y
1
B
CE
LYS
302
B
CE
LYS
302
1
Y
1
B
NZ
LYS
302
B
NZ
LYS
302
1
Y
1
A
ALA
303
A
ALA
303
1
Y
1
A
THR
304
A
THR
304
1
Y
1
A
GLN
305
A
GLN
305
1
Y
1
A
THR
306
A
THR
306
1
Y
1
A
PHE
307
A
PHE
307
1
Y
1
A
MET
308
A
MET
308
1
Y
1
A
ARG
309
A
ARG
309
1
Y
1
B
ALA
303
B
ALA
303
1
Y
1
B
THR
304
B
THR
304
1
Y
1
B
GLN
305
B
GLN
305
1
Y
1
B
THR
306
B
THR
306
1
Y
1
B
PHE
307
B
PHE
307
1
Y
1
B
MET
308
B
MET
308
1
Y
1
B
ARG
309
B
ARG
309
1
Y
1
A
PRO
83
-32.34
149.10
1
A
LEU
96
-94.20
34.63
1
A
LEU
113
2.08
98.52
1
A
ASP
121
-49.85
-14.88
1
A
SER
139
177.46
156.27
1
A
ASN
165
32.02
63.65
1
A
GLU
194
-23.24
-54.12
1
A
LEU
211
-91.43
52.59
1
A
ALA
225
169.24
140.56
1
A
ASP
230
49.01
73.29
1
A
ALA
243
-54.66
90.34
1
A
VAL
244
-72.73
-85.33
1
A
HIS
288
-148.57
20.26
1
A
GLU
298
-34.28
-31.06
1
A
LEU
301
109.98
-49.81
1
B
GLU
92
-165.96
118.46
1
B
SER
108
-49.13
159.33
1
B
LEU
113
-23.38
101.11
1
B
PHE
118
174.96
171.77
1
B
ALA
149
-47.51
-74.56
1
B
TRP
171
179.30
165.52
1
B
LYS
223
-75.60
25.76
1
B
VAL
244
-67.06
-72.58
1
B
HIS
288
-151.91
16.63
1
B
LEU
301
-8.48
-67.80
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER_REP.TOP
DHA.PAR
DHA.TOP
51.4
-3.709
-3.064
0.00
-3.709
0.00
7.417
CRYSTAL IS WITH HEMIHEDRAL TWINNING, TWINNING OPERATOR IS "H, -H-K, -L", TWINNING FRACTION IS 0.5
0.2677
0.008
0.1798
0.1798
2.10
29.82
1852
37822
4.7
95.7
RANDOM
1289180.40
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY V19
FLAT MODEL
85.7706
0.355934
0.35
0.25
5.00
0.53
0.42
2.10
29.82
211
4883
78
0
4594
0.008
1.3
23.0
0.85
5.94
1.50
8.46
2.00
8.64
2.00
11.51
2.50
0.3657
0.023
0.2938
2.18
212
3387
10
5.36
91.0
13.1
2.100
30.000
1V1A
38730
-0.400
0.05600
1
19.6000
4.580
97.9
0.35500
2.10
2.18
2.680
1
96.2
refinement
CNS
1.1
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
2-KETO-3-DEOXYGLUCONATE KINASE
2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS WITH BOUND 2-KETO-3-DEOXYGLUCONATE AND ADP
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
HIS
21
A
HIS
21
HELX_P
A
LYS
25
A
LYS
25
5
1
5
A
GLY
34
A
GLY
34
HELX_P
A
LEU
46
A
LEU
46
1
2
13
A
ASP
59
A
ASP
59
HELX_P
A
GLY
73
A
GLY
73
1
3
15
A
ALA
109
A
ALA
109
HELX_P
A
LEU
113
A
LEU
113
5
4
5
A
ASP
119
A
ASP
119
HELX_P
A
GLU
124
A
GLU
124
5
5
6
A
ILE
134
A
ILE
134
HELX_P
A
LEU
138
A
LEU
138
5
6
5
A
SER
139
A
SER
139
HELX_P
A
ARG
155
A
ARG
155
1
7
17
A
SER
172
A
SER
172
HELX_P
A
LEU
184
A
LEU
184
1
8
13
A
PRO
185
A
PRO
185
HELX_P
A
VAL
187
A
VAL
187
5
9
3
A
GLU
194
A
GLU
194
HELX_P
A
GLY
202
A
GLY
202
1
10
9
A
ARG
203
A
ARG
203
HELX_P
A
LEU
211
A
LEU
211
1
11
9
A
GLY
221
A
GLY
221
HELX_P
A
LYS
223
A
LYS
223
5
12
3
A
GLY
248
A
GLY
248
HELX_P
A
TRP
263
A
TRP
263
1
13
16
A
PRO
266
A
PRO
266
HELX_P
A
ALA
283
A
ALA
283
1
14
18
A
TYR
293
A
TYR
293
HELX_P
A
GLU
298
A
GLU
298
1
15
6
B
HIS
21
B
HIS
21
HELX_P
B
LYS
25
B
LYS
25
5
16
5
B
GLY
34
B
GLY
34
HELX_P
B
LEU
46
B
LEU
46
1
17
13
B
ASP
59
B
ASP
59
HELX_P
B
GLU
72
B
GLU
72
1
18
14
B
SER
108
B
SER
108
HELX_P
B
ALA
112
B
ALA
112
5
19
5
B
ASP
119
B
ASP
119
HELX_P
B
LEU
123
B
LEU
123
5
20
5
B
ILE
134
B
ILE
134
HELX_P
B
LEU
138
B
LEU
138
5
21
5
B
SER
139
B
SER
139
HELX_P
B
ARG
155
B
ARG
155
1
22
17
B
SER
172
B
SER
172
HELX_P
B
LEU
184
B
LEU
184
1
23
13
B
PRO
185
B
PRO
185
HELX_P
B
VAL
187
B
VAL
187
5
24
3
B
GLU
194
B
GLU
194
HELX_P
B
LEU
200
B
LEU
200
1
25
7
B
ARG
203
B
ARG
203
HELX_P
B
LEU
211
B
LEU
211
1
26
9
B
GLY
221
B
GLY
221
HELX_P
B
LYS
223
B
LYS
223
5
27
3
B
GLY
248
B
GLY
248
HELX_P
B
TRP
263
B
TRP
263
1
28
16
B
PRO
266
B
PRO
266
HELX_P
B
ALA
283
B
ALA
283
1
29
18
B
TYR
293
B
TYR
293
HELX_P
B
GLU
298
B
GLU
298
1
30
6
TRANSFERASE
2-KETO-3-DEOXYGLUCONATE KINASE, ATP, THERMUS THERMOPHILUS, STRUCTURAL GENOMICS, TRANSFERASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI
1V1A
PDB
1
1V1A
1
309
1V1A
1
309
1V1A
A
1
1
309
1
309
1V1A
1
309
1V1A
B
1
1
309
9
8
3
6
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
PHE
79
A
PHE
79
A
ARG
81
A
ARG
81
A
VAL
50
A
VAL
50
A
VAL
56
A
VAL
56
A
VAL
4
A
VAL
4
A
ALA
7
A
ALA
7
A
PHE
128
A
PHE
128
A
SER
132
A
SER
132
A
ARG
159
A
ARG
159
A
ASP
163
A
ASP
163
A
LEU
189
A
LEU
189
A
SER
193
A
SER
193
A
GLU
215
A
GLU
215
A
LYS
219
A
LYS
219
A
ALA
225
A
ALA
225
A
VAL
229
A
VAL
229
A
ARG
232
A
ARG
232
A
GLU
235
A
GLU
235
A
GLY
99
A
GLY
99
A
TYR
104
A
TYR
104
A
LEU
88
A
LEU
88
A
TYR
93
A
TYR
93
A
LEU
11
A
LEU
11
A
VAL
15
A
VAL
15
A
LEU
27
A
LEU
27
A
GLY
33
A
GLY
33
B
LEU
27
B
LEU
27
B
GLY
33
B
GLY
33
B
LEU
11
B
LEU
11
B
PRO
16
B
PRO
16
B
LEU
88
B
LEU
88
B
TYR
93
B
TYR
93
B
GLY
99
B
GLY
99
B
TYR
104
B
TYR
104
B
VAL
4
B
VAL
4
B
ALA
7
B
ALA
7
B
VAL
50
B
VAL
50
B
VAL
56
B
VAL
56
B
PHE
79
B
PHE
79
B
ARG
81
B
ARG
81
B
LEU
131
B
LEU
131
B
SER
132
B
SER
132
B
SER
161
B
SER
161
B
ASP
163
B
ASP
163
B
LEU
189
B
LEU
189
B
SER
193
B
SER
193
B
GLU
215
B
GLU
215
B
LYS
219
B
LYS
219
B
ALA
225
B
ALA
225
B
VAL
229
B
VAL
229
B
ARG
232
B
ARG
232
B
GLY
236
B
GLY
236
BINDING SITE FOR RESIDUE KDG A 1302
Software
14
BINDING SITE FOR RESIDUE ADP A 1303
Software
14
BINDING SITE FOR RESIDUE KDG B 1302
Software
11
BINDING SITE FOR RESIDUE ADP B 1303
Software
11
A
LEU
11
A
LEU
11
14
1_555
A
GLY
34
A
GLY
34
14
1_555
A
ALA
35
A
ALA
35
14
1_555
A
ASN
38
A
ASN
38
14
1_555
A
TYR
89
A
TYR
89
14
1_555
A
TYR
103
A
TYR
103
14
1_555
A
ARG
105
A
ARG
105
14
1_555
A
ILE
134
A
ILE
134
14
1_555
A
ARG
167
A
ARG
167
14
1_555
A
GLY
248
A
GLY
248
14
1_555
A
ASP
251
A
ASP
251
14
1_555
A
ASP
287
A
ASP
287
14
1_555
A
HOH
2050
G
HOH
14
1_555
A
HOH
2117
G
HOH
14
1_555
A
LYS
219
A
LYS
219
14
1_555
A
GLY
221
A
GLY
221
14
1_555
A
GLY
224
A
GLY
224
14
1_555
A
PHE
239
A
PHE
239
14
1_555
A
ALA
249
A
ALA
249
14
1_555
A
GLY
250
A
GLY
250
14
1_555
A
ASN
275
A
ASN
275
14
1_555
A
ALA
279
A
ALA
279
14
1_555
A
HOH
2073
G
HOH
14
1_555
A
HOH
2074
G
HOH
14
1_555
A
HOH
2117
G
HOH
14
1_555
A
HOH
2118
G
HOH
14
1_555
A
HOH
2119
G
HOH
14
1_555
A
HOH
2120
G
HOH
14
1_555
B
GLY
34
B
GLY
34
11
1_555
B
ALA
35
B
ALA
35
11
1_555
B
ASN
38
B
ASN
38
11
1_555
B
TYR
89
B
TYR
89
11
1_555
B
TYR
103
B
TYR
103
11
1_555
B
ARG
105
B
ARG
105
11
1_555
B
ILE
134
B
ILE
134
11
1_555
B
ARG
167
B
ARG
167
11
1_555
B
ASP
251
B
ASP
251
11
1_555
B
ASP
287
B
ASP
287
11
1_555
B
HOH
2040
H
HOH
11
1_555
B
LYS
219
B
LYS
219
11
1_555
B
GLY
221
B
GLY
221
11
1_555
B
GLY
224
B
GLY
224
11
1_555
B
PHE
239
B
PHE
239
11
1_555
B
ALA
243
B
ALA
243
11
1_555
B
GLY
250
B
GLY
250
11
1_555
B
PHE
253
B
PHE
253
11
1_555
B
ASN
275
B
ASN
275
11
1_555
B
HOH
2058
H
HOH
11
1_555
B
HOH
2089
H
HOH
11
1_555
B
HOH
2091
H
HOH
11
1_555
173
P 63