50.95
0.584
9.198
19.652
A
O5'
DG
1
ATOM
A
O5'
DG
1
1
1.00
1
O
47.70
-0.152
9.154
18.429
A
C5'
DG
1
ATOM
A
C5'
DG
1
1
1.00
1
C
42.38
-0.713
10.523
18.132
A
C4'
DG
1
ATOM
A
C4'
DG
1
1
1.00
1
C
34.41
0.378
11.459
18.003
A
O4'
DG
1
ATOM
A
O4'
DG
1
1
1.00
1
O
40.88
-1.486
10.632
16.825
A
C3'
DG
1
ATOM
A
C3'
DG
1
1
1.00
1
C
50.01
-2.413
11.718
16.917
A
O3'
DG
1
ATOM
A
O3'
DG
1
1
1.00
1
O
42.25
-0.392
10.948
15.825
A
C2'
DG
1
ATOM
A
C2'
DG
1
1
1.00
1
C
43.45
0.563
11.816
16.638
A
C1'
DG
1
ATOM
A
C1'
DG
1
1
1.00
1
C
41.58
1.971
11.619
16.326
A
N9
DG
1
ATOM
A
N9
DG
1
1
1.00
1
N
46.30
2.637
10.419
16.240
A
C8
DG
1
ATOM
A
C8
DG
1
1
1.00
1
C
45.12
3.906
10.555
15.974
A
N7
DG
1
ATOM
A
N7
DG
1
1
1.00
1
N
42.61
4.092
11.930
15.873
A
C5
DG
1
ATOM
A
C5
DG
1
1
1.00
1
C
36.11
5.265
12.681
15.603
A
C6
DG
1
ATOM
A
C6
DG
1
1
1.00
1
C
37.24
6.415
12.269
15.402
A
O6
DG
1
ATOM
A
O6
DG
1
1
1.00
1
O
30.05
5.002
14.047
15.581
A
N1
DG
1
ATOM
A
N1
DG
1
1
1.00
1
N
27.69
3.772
14.618
15.795
A
C2
DG
1
ATOM
A
C2
DG
1
1
1.00
1
C
34.31
3.719
15.952
15.728
A
N2
DG
1
ATOM
A
N2
DG
1
1
1.00
1
N
38.17
2.674
13.931
16.054
A
N3
DG
1
ATOM
A
N3
DG
1
1
1.00
1
N
36.78
2.905
12.597
16.077
A
C4
DG
1
ATOM
A
C4
DG
1
1
1.00
1
C
51.20
-3.669
11.782
15.918
A
P
C38
2
HETATM
A
P
C38
1
2
1.00
1
P
54.32
-4.000
10.380
15.555
A
O1P
C38
2
HETATM
A
O1P
C38
1
2
1.00
1
O
54.65
-4.711
12.648
16.528
A
O2P
C38
2
HETATM
A
O2P
C38
1
2
1.00
1
O
48.76
-3.100
12.537
14.640
A
O5'
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2
HETATM
A
O5'
C38
1
2
1.00
1
O
47.26
-2.893
13.939
14.683
A
C5'
C38
2
HETATM
A
C5'
C38
1
2
1.00
1
C
43.33
-1.950
14.366
13.585
A
C4'
C38
2
HETATM
A
C4'
C38
1
2
1.00
1
C
44.46
-0.649
13.780
13.754
A
O4'
C38
2
HETATM
A
O4'
C38
1
2
1.00
1
O
52.33
-2.368
14.032
12.152
A
C3'
C38
2
HETATM
A
C3'
C38
1
2
1.00
1
C
57.24
-2.795
15.246
11.524
A
O3'
C38
2
HETATM
A
O3'
C38
1
2
1.00
1
O
45.48
-1.097
13.482
11.507
A
C2'
C38
2
HETATM
A
C2'
C38
1
2
1.00
1
C
40.34
-0.019
13.865
12.501
A
C1'
C38
2
HETATM
A
C1'
C38
1
2
1.00
1
C
35.73
1.199
13.040
12.545
A
N1
C38
2
HETATM
A
N1
C38
1
2
1.00
1
N
31.88
2.430
13.701
12.515
A
C2
C38
2
HETATM
A
C2
C38
1
2
1.00
1
C
33.15
2.438
14.941
12.446
A
O2
C38
2
HETATM
A
O2
C38
1
2
1.00
1
O
29.50
3.573
12.983
12.566
A
N3
C38
2
HETATM
A
N3
C38
1
2
1.00
1
N
38.44
3.518
11.652
12.649
A
C4
C38
2
HETATM
A
C4
C38
1
2
1.00
1
C
30.90
4.670
10.981
12.696
A
N4
C38
2
HETATM
A
N4
C38
1
2
1.00
1
N
23.32
2.275
10.950
12.684
A
C5
C38
2
HETATM
A
C5
C38
1
2
1.00
1
C
34.73
1.149
11.673
12.624
A
C6
C38
2
HETATM
A
C6
C38
1
2
1.00
1
C
52.11
2.216
8.798
12.882
A
I
C38
2
HETATM
A
I
C38
1
2
1.00
1
I
47.37
-3.363
15.220
10.024
A
P
DG
3
ATOM
A
P
DG
1
3
1.00
1
P
61.28
-4.415
16.265
9.925
A
OP1
DG
3
ATOM
A
OP1
DG
1
3
1.00
1
O
54.24
-3.691
13.812
9.676
A
OP2
DG
3
ATOM
A
OP2
DG
1
3
1.00
1
O
55.47
-2.108
15.679
9.157
A
O5'
DG
3
ATOM
A
O5'
DG
1
3
1.00
1
O
55.03
-1.220
16.676
9.654
A
C5'
DG
3
ATOM
A
C5'
DG
1
3
1.00
1
C
44.85
0.091
16.630
8.907
A
C4'
DG
3
ATOM
A
C4'
DG
1
3
1.00
1
C
41.76
0.725
15.349
9.130
A
O4'
DG
3
ATOM
A
O4'
DG
1
3
1.00
1
O
40.73
-0.024
16.768
7.391
A
C3'
DG
3
ATOM
A
C3'
DG
1
3
1.00
1
C
43.52
1.174
17.380
6.900
A
O3'
DG
3
ATOM
A
O3'
DG
1
3
1.00
1
O
44.28
-0.095
15.322
6.937
A
C2'
DG
3
ATOM
A
C2'
DG
1
3
1.00
1
C
44.62
0.900
14.681
7.887
A
C1'
DG
3
ATOM
A
C1'
DG
1
3
1.00
1
C
41.28
0.726
13.257
8.128
A
N9
DG
3
ATOM
A
N9
DG
1
3
1.00
1
N
38.50
-0.429
12.512
8.029
A
C8
DG
3
ATOM
A
C8
DG
1
3
1.00
1
C
39.95
-0.263
11.264
8.366
A
N7
DG
3
ATOM
A
N7
DG
1
3
1.00
1
N
35.85
1.082
11.177
8.705
A
C5
DG
3
ATOM
A
C5
DG
1
3
1.00
1
C
32.99
1.839
10.082
9.173
A
C6
DG
3
ATOM
A
C6
DG
1
3
1.00
1
C
34.22
1.460
8.934
9.430
A
O6
DG
3
ATOM
A
O6
DG
1
3
1.00
1
O
44.42
3.172
10.430
9.363
A
N1
DG
3
ATOM
A
N1
DG
1
3
1.00
1
N
28.26
3.704
11.678
9.152
A
C2
DG
3
ATOM
A
C2
DG
1
3
1.00
1
C
30.98
5.023
11.816
9.379
A
N2
DG
3
ATOM
A
N2
DG
1
3
1.00
1
N
36.35
2.999
12.713
8.745
A
N3
DG
3
ATOM
A
N3
DG
1
3
1.00
1
N
39.62
1.703
12.393
8.540
A
C4
DG
3
ATOM
A
C4
DG
1
3
1.00
1
C
45.51
1.366
17.628
5.321
A
P
DA
4
ATOM
A
P
DA
1
4
1.00
1
P
51.71
1.712
19.063
5.153
A
OP1
DA
4
ATOM
A
OP1
DA
1
4
1.00
1
O
44.51
0.200
17.069
4.596
A
OP2
DA
4
ATOM
A
OP2
DA
1
4
1.00
1
O
41.48
2.660
16.771
4.961
A
O5'
DA
4
ATOM
A
O5'
DA
1
4
1.00
1
O
40.91
3.926
17.105
5.522
A
C5'
DA
4
ATOM
A
C5'
DA
1
4
1.00
1
C
38.44
4.833
15.896
5.539
A
C4'
DA
4
ATOM
A
C4'
DA
1
4
1.00
1
C
36.25
4.274
14.849
6.365
A
O4'
DA
4
ATOM
A
O4'
DA
1
4
1.00
1
O
32.45
5.087
15.243
4.184
A
C3'
DA
4
ATOM
A
C3'
DA
1
4
1.00
1
C
34.60
6.206
15.864
3.551
A
O3'
DA
4
ATOM
A
O3'
DA
1
4
1.00
1
O
30.17
5.429
13.817
4.571
A
C2'
DA
4
ATOM
A
C2'
DA
1
4
1.00
1
C
35.39
4.509
13.575
5.764
A
C1'
DA
4
ATOM
A
C1'
DA
1
4
1.00
1
C
32.38
3.211
13.018
5.390
A
N9
DA
4
ATOM
A
N9
DA
1
4
1.00
1
N
31.98
2.155
13.681
4.822
A
C8
DA
4
ATOM
A
C8
DA
1
4
1.00
1
C
37.62
1.105
12.926
4.620
A
N7
DA
4
ATOM
A
N7
DA
1
4
1.00
1
N
28.72
1.498
11.678
5.079
A
C5
DA
4
ATOM
A
C5
DA
1
4
1.00
1
C
41.30
0.832
10.444
5.145
A
C6
DA
4
ATOM
A
C6
DA
1
4
1.00
1
C
41.01
-0.422
10.263
4.736
A
N6
DA
4
ATOM
A
N6
DA
1
4
1.00
1
N
38.95
1.508
9.391
5.652
A
N1
DA
4
ATOM
A
N1
DA
1
4
1.00
1
N
34.60
2.769
9.583
6.066
A
C2
DA
4
ATOM
A
C2
DA
1
4
1.00
1
C
30.92
3.499
10.696
6.060
A
N3
DA
4
ATOM
A
N3
DA
1
4
1.00
1
N
29.14
2.796
11.719
5.549
A
C4
DA
4
ATOM
A
C4
DA
1
4
1.00
1
C
39.37
6.059
16.435
2.059
A
P
DG
5
ATOM
A
P
DG
1
5
1.00
1
P
41.09
7.253
17.273
1.771
A
OP1
DG
5
ATOM
A
OP1
DG
1
5
1.00
1
O
37.12
4.701
17.020
1.923
A
OP2
DG
5
ATOM
A
OP2
DG
1
5
1.00
1
O
41.98
6.111
15.134
1.145
A
O5'
DG
5
ATOM
A
O5'
DG
1
5
1.00
1
O
41.96
6.099
15.242
-0.278
A
C5'
DG
5
ATOM
A
C5'
DG
1
5
1.00
1
C
34.99
6.525
13.935
-0.901
A
C4'
DG
5
ATOM
A
C4'
DG
1
5
1.00
1
C
31.84
5.579
12.885
-0.582
A
O4'
DG
5
ATOM
A
O4'
DG
1
5
1.00
1
O
30.13
6.639
13.937
-2.429
A
C3'
DG
5
ATOM
A
C3'
DG
1
5
1.00
1
C
38.87
7.787
13.168
-2.779
A
O3'
DG
5
ATOM
A
O3'
DG
1
5
1.00
1
O
37.46
5.414
13.157
-2.864
A
C2'
DG
5
ATOM
A
C2'
DG
1
5
1.00
1
C
30.99
5.382
12.133
-1.760
A
C1'
DG
5
ATOM
A
C1'
DG
1
5
1.00
1
C
38.39
4.144
11.377
-1.623
A
N9
DG
5
ATOM
A
N9
DG
1
5
1.00
1
N
25.58
2.862
11.791
-1.893
A
C8
DG
5
ATOM
A
C8
DG
1
5
1.00
1
C
35.02
1.972
10.864
-1.668
A
N7
DG
5
ATOM
A
N7
DG
1
5
1.00
1
N
27.74
2.713
9.778
-1.222
A
C5
DG
5
ATOM
A
C5
DG
1
5
1.00
1
C
26.94
2.296
8.481
-0.817
A
C6
DG
5
ATOM
A
C6
DG
1
5
1.00
1
C
28.70
1.153
8.024
-0.775
A
O6
DG
5
ATOM
A
O6
DG
1
5
1.00
1
O
26.42
3.377
7.692
-0.436
A
N1
DG
5
ATOM
A
N1
DG
1
5
1.00
1
N
29.16
4.694
8.102
-0.439
A
C2
DG
5
ATOM
A
C2
DG
1
5
1.00
1
C
28.76
5.606
7.214
-0.027
A
N2
DG
5
ATOM
A
N2
DG
1
5
1.00
1
N
30.24
5.089
9.304
-0.817
A
N3
DG
5
ATOM
A
N3
DG
1
5
1.00
1
N
24.85
4.053
10.082
-1.191
A
C4
DG
5
ATOM
A
C4
DG
1
5
1.00
1
C
42.20
8.808
13.714
-3.883
A
P
DA
6
ATOM
A
P
DA
1
6
1.00
1
P
53.27
8.850
15.191
-3.804
A
OP1
DA
6
ATOM
A
OP1
DA
1
6
1.00
1
O
51.14
8.448
13.057
-5.161
A
OP2
DA
6
ATOM
A
OP2
DA
1
6
1.00
1
O
46.84
10.199
13.126
-3.399
A
O5'
DA
6
ATOM
A
O5'
DA
1
6
1.00
1
O
40.44
10.421
11.729
-3.425
A
C5'
DA
6
ATOM
A
C5'
DA
1
6
1.00
1
C
36.99
11.900
11.442
-3.400
A
C4'
DA
6
ATOM
A
C4'
DA
1
6
1.00
1
C
32.88
12.054
10.081
-3.851
A
O4'
DA
6
ATOM
A
O4'
DA
1
6
1.00
1
O
36.88
12.696
12.255
-4.414
A
C3'
DA
6
ATOM
A
C3'
DA
1
6
1.00
1
C
40.52
14.090
12.140
-4.116
A
O3'
DA
6
ATOM
A
O3'
DA
1
6
1.00
1
O
30.18
12.381
11.535
-5.709
A
C2'
DA
6
ATOM
A
C2'
DA
1
6
1.00
1
C
38.89
12.318
10.077
-5.254
A
C1'
DA
6
ATOM
A
C1'
DA
1
6
1.00
1
C
30.03
11.273
9.286
-5.894
A
N9
DA
6
ATOM
A
N9
DA
1
6
1.00
1
N
25.69
10.055
9.683
-6.391
A
C8
DA
6
ATOM
A
C8
DA
1
6
1.00
1
C
35.78
9.347
8.701
-6.893
A
N7
DA
6
ATOM
A
N7
DA
1
6
1.00
1
N
23.71
10.153
7.585
-6.716
A
C5
DA
6
ATOM
A
C5
DA
1
6
1.00
1
C
30.56
9.977
6.231
-7.033
A
C6
DA
6
ATOM
A
C6
DA
1
6
1.00
1
C
32.35
8.885
5.737
-7.619
A
N6
DA
6
ATOM
A
N6
DA
1
6
1.00
1
N
27.12
10.978
5.384
-6.722
A
N1
DA
6
ATOM
A
N1
DA
1
6
1.00
1
N
31.94
12.075
5.871
-6.128
A
C2
DA
6
ATOM
A
C2
DA
1
6
1.00
1
C
27.34
12.356
7.119
-5.777
A
N3
DA
6
ATOM
A
N3
DA
1
6
1.00
1
N
35.70
11.342
7.935
-6.105
A
C4
DA
6
ATOM
A
C4
DA
1
6
1.00
1
C
39.90
15.168
12.929
-5.010
A
P
DG
7
ATOM
A
P
DG
1
7
1.00
1
P
43.31
16.359
13.185
-4.157
A
OP1
DG
7
ATOM
A
OP1
DG
1
7
1.00
1
O
37.40
14.468
14.067
-5.660
A
OP2
DG
7
ATOM
A
OP2
DG
1
7
1.00
1
O
36.48
15.563
11.868
-6.128
A
O5'
DG
7
ATOM
A
O5'
DG
1
7
1.00
1
O
39.93
15.981
10.556
-5.766
A
C5'
DG
7
ATOM
A
C5'
DG
1
7
1.00
1
C
42.04
15.973
9.650
-6.975
A
C4'
DG
7
ATOM
A
C4'
DG
1
7
1.00
1
C
42.93
14.622
9.342
-7.385
A
O4'
DG
7
ATOM
A
O4'
DG
1
7
1.00
1
O
47.88
16.682
10.195
-8.218
A
C3'
DG
7
ATOM
A
C3'
DG
1
7
1.00
1
C
51.00
17.519
9.176
-8.768
A
O3'
DG
7
ATOM
A
O3'
DG
1
7
1.00
1
O
42.13
15.543
10.502
-9.176
A
C2'
DG
7
ATOM
A
C2'
DG
1
7
1.00
1
C
40.00
14.548
9.426
-8.798
A
C1'
DG
7
ATOM
A
C1'
DG
1
7
1.00
1
C
36.13
13.157
9.691
-9.156
A
N9
DG
7
ATOM
A
N9
DG
1
7
1.00
1
N
28.26
12.520
10.908
-9.214
A
C8
DG
7
ATOM
A
C8
DG
1
7
1.00
1
C
26.73
11.258
10.808
-9.538
A
N7
DG
7
ATOM
A
N7
DG
1
7
1.00
1
N
35.25
11.055
9.445
-9.715
A
C5
DG
7
ATOM
A
C5
DG
1
7
1.00
1
C
29.54
9.882
8.721
-10.072
A
C6
DG
7
ATOM
A
C6
DG
1
7
1.00
1
C
32.55
8.754
9.153
-10.320
A
O6
DG
7
ATOM
A
O6
DG
1
7
1.00
1
O
29.34
10.122
7.355
-10.131
A
N1
DG
7
ATOM
A
N1
DG
1
7
1.00
1
N
32.34
11.329
6.754
-9.885
A
C2
DG
7
ATOM
A
C2
DG
1
7
1.00
1
C
35.44
11.359
5.419
-9.993
A
N2
DG
7
ATOM
A
N2
DG
1
7
1.00
1
N
39.42
12.428
7.412
-9.556
A
N3
DG
7
ATOM
A
N3
DG
1
7
1.00
1
N
34.58
12.219
8.742
-9.489
A
C4
DG
7
ATOM
A
C4
DG
1
7
1.00
1
C
46.29
18.721
9.576
-9.753
A
P
DC
8
ATOM
A
P
DC
1
8
1.00
1
P
56.44
19.976
9.382
-9.027
A
OP1
DC
8
ATOM
A
OP1
DC
1
8
1.00
1
O
43.48
18.424
10.905
-10.330
A
OP2
DC
8
ATOM
A
OP2
DC
1
8
1.00
1
O
45.72
18.658
8.465
-10.890
A
O5'
DC
8
ATOM
A
O5'
DC
1
8
1.00
1
O
37.53
18.798
7.086
-10.561
A
C5'
DC
8
ATOM
A
C5'
DC
1
8
1.00
1
C
39.63
17.850
6.249
-11.388
A
C4'
DC
8
ATOM
A
C4'
DC
1
8
1.00
1
C
42.08
16.477
6.582
-11.118
A
O4'
DC
8
ATOM
A
O4'
DC
1
8
1.00
1
O
45.94
17.968
6.391
-12.900
A
C3'
DC
8
ATOM
A
C3'
DC
1
8
1.00
1
C
55.54
19.079
5.668
-13.429
A
O3'
DC
8
ATOM
A
O3'
DC
1
8
1.00
1
O
45.34
16.622
5.883
-13.392
A
C2'
DC
8
ATOM
A
C2'
DC
1
8
1.00
1
C
43.91
15.695
6.038
-12.179
A
C1'
DC
8
ATOM
A
C1'
DC
1
8
1.00
1
C
36.51
14.555
6.936
-12.420
A
N1
DC
8
ATOM
A
N1
DC
1
8
1.00
1
N
38.11
13.316
6.374
-12.716
A
C2
DC
8
ATOM
A
C2
DC
1
8
1.00
1
C
40.60
13.219
5.140
-12.757
A
O2
DC
8
ATOM
A
O2
DC
1
8
1.00
1
O
34.19
12.258
7.184
-12.949
A
N3
DC
8
ATOM
A
N3
DC
1
8
1.00
1
N
36.51
12.408
8.508
-12.893
A
C4
DC
8
ATOM
A
C4
DC
1
8
1.00
1
C
34.78
11.339
9.268
-13.134
A
N4
DC
8
ATOM
A
N4
DC
1
8
1.00
1
N
37.34
13.663
9.111
-12.587
A
C5
DC
8
ATOM
A
C5
DC
1
8
1.00
1
C
33.11
14.701
8.294
-12.360
A
C6
DC
8
ATOM
A
C6
DC
1
8
1.00
1
C
49.43
2.803
4.128
-16.239
B
O5'
DG
9
ATOM
B
O5'
DG
1
1
1.00
1
O
36.40
3.702
3.194
-16.829
B
C5'
DG
9
ATOM
B
C5'
DG
1
1
1.00
1
C
38.10
4.351
2.296
-15.803
B
C4'
DG
9
ATOM
B
C4'
DG
1
1
1.00
1
C
34.65
5.627
2.826
-15.377
B
O4'
DG
9
ATOM
B
O4'
DG
1
1
1.00
1
O
32.22
3.549
2.056
-14.527
B
C3'
DG
9
ATOM
B
C3'
DG
1
1
1.00
1
C
36.15
3.785
0.720
-14.071
B
O3'
DG
9
ATOM
B
O3'
DG
1
1
1.00
1
O
32.15
4.114
3.088
-13.565
B
C2'
DG
9
ATOM
B
C2'
DG
1
1
1.00
1
C
37.95
5.566
3.244
-14.018
B
C1'
DG
9
ATOM
B
C1'
DG
1
1
1.00
1
C
33.00
6.080
4.611
-13.961
B
N9
DG
9
ATOM
B
N9
DG
1
1
1.00
1
N
39.23
5.378
5.771
-14.169
B
C8
DG
9
ATOM
B
C8
DG
1
1
1.00
1
C
37.65
6.123
6.842
-14.093
B
N7
DG
9
ATOM
B
N7
DG
1
1
1.00
1
N
36.09
7.388
6.359
-13.803
B
C5
DG
9
ATOM
B
C5
DG
1
1
1.00
1
C
32.56
8.611
7.050
-13.603
B
C6
DG
9
ATOM
B
C6
DG
1
1
1.00
1
C
32.92
8.821
8.259
-13.645
B
O6
DG
9
ATOM
B
O6
DG
1
1
1.00
1
O
34.76
9.656
6.176
-13.333
B
N1
DG
9
ATOM
B
N1
DG
1
1
1.00
1
N
35.81
9.539
4.806
-13.265
B
C2
DG
9
ATOM
B
C2
DG
1
1
1.00
1
C
35.58
10.668
4.121
-13.001
B
N2
DG
9
ATOM
B
N2
DG
1
1
1.00
1
N
32.75
8.402
4.151
-13.446
B
N3
DG
9
ATOM
B
N3
DG
1
1
1.00
1
N
26.31
7.379
4.983
-13.710
B
C4
DG
9
ATOM
B
C4
DG
1
1
1.00
1
C
41.87
3.084
0.189
-12.723
B
P
C38
10
HETATM
B
P
C38
1
2
1.00
1
P
37.75
2.012
1.144
-12.339
B
O1P
C38
10
HETATM
B
O1P
C38
1
2
1.00
1
O
40.62
2.756
-1.248
-12.918
B
O2P
C38
10
HETATM
B
O2P
C38
1
2
1.00
1
O
43.03
4.261
0.280
-11.659
B
O5'
C38
10
HETATM
B
O5'
C38
1
2
1.00
1
O
32.25
5.500
-0.370
-11.911
B
C5'
C38
10
HETATM
B
C5'
C38
1
2
1.00
1
C
33.42
6.534
0.078
-10.909
B
C4'
C38
10
HETATM
B
C4'
C38
1
2
1.00
1
C
37.82
6.878
1.465
-11.136
B
O4'
C38
10
HETATM
B
O4'
C38
1
2
1.00
1
O
36.99
6.116
-0.019
-9.439
B
C3'
C38
10
HETATM
B
C3'
C38
1
2
1.00
1
C
41.28
7.208
-0.574
-8.699
B
O3'
C38
10
HETATM
B
O3'
C38
1
2
1.00
1
O
33.63
5.876
1.430
-9.044
B
C2'
C38
10
HETATM
B
C2'
C38
1
2
1.00
1
C
40.99
6.926
2.123
-9.885
B
C1'
C38
10
HETATM
B
C1'
C38
1
2
1.00
1
C
33.05
6.739
3.559
-10.128
B
N1
C38
10
HETATM
B
N1
C38
1
2
1.00
1
N
34.28
7.873
4.374
-10.200
B
C2
C38
10
HETATM
B
C2
C38
1
2
1.00
1
C
31.43
8.984
3.855
-10.045
B
O2
C38
10
HETATM
B
O2
C38
1
2
1.00
1
O
33.25
7.728
5.699
-10.438
B
N3
C38
10
HETATM
B
N3
C38
1
2
1.00
1
N
30.35
6.511
6.211
-10.601
B
C4
C38
10
HETATM
B
C4
C38
1
2
1.00
1
C
27.42
6.412
7.525
-10.797
B
N4
C38
10
HETATM
B
N4
C38
1
2
1.00
1
N
33.40
5.342
5.396
-10.552
B
C5
C38
10
HETATM
B
C5
C38
1
2
1.00
1
C
32.39
5.497
4.093
-10.296
B
C6
C38
10
HETATM
B
C6
C38
1
2
1.00
1
C
39.38
3.414
6.188
-11.087
B
I
C38
10
HETATM
B
I
C38
1
2
1.00
1
I
42.58
7.017
-0.959
-7.154
B
P
DG
11
ATOM
B
P
DG
1
3
1.00
1
P
49.41
8.045
-1.967
-6.812
B
OP1
DG
11
ATOM
B
OP1
DG
1
3
1.00
1
O
38.23
5.586
-1.257
-6.923
B
OP2
DG
11
ATOM
B
OP2
DG
1
3
1.00
1
O
44.17
7.379
0.382
-6.380
B
O5'
DG
11
ATOM
B
O5'
DG
1
3
1.00
1
O
37.02
8.649
0.999
-6.565
B
C5'
DG
11
ATOM
B
C5'
DG
1
3
1.00
1
C
34.15
8.645
2.390
-5.979
B
C4'
DG
11
ATOM
B
C4'
DG
1
3
1.00
1
C
41.34
7.653
3.213
-6.643
B
O4'
DG
11
ATOM
B
O4'
DG
1
3
1.00
1
O
29.18
8.319
2.470
-4.485
B
C3'
DG
11
ATOM
B
C3'
DG
1
3
1.00
1
C
33.80
9.130
3.490
-3.915
B
O3'
DG
11
ATOM
B
O3'
DG
1
3
1.00
1
O
29.26
6.881
2.947
-4.479
B
C2'
DG
11
ATOM
B
C2'
DG
1
3
1.00
1
C
35.07
6.936
3.907
-5.644
B
C1'
DG
11
ATOM
B
C1'
DG
1
3
1.00
1
C
30.89
5.644
4.300
-6.184
B
N9
DG
11
ATOM
B
N9
DG
1
3
1.00
1
N
31.63
4.505
3.537
-6.264
B
C8
DG
11
ATOM
B
C8
DG
1
3
1.00
1
C
30.40
3.480
4.195
-6.727
B
N7
DG
11
ATOM
B
N7
DG
1
3
1.00
1
N
33.17
3.977
5.463
-6.982
B
C5
DG
11
ATOM
B
C5
DG
1
3
1.00
1
C
28.43
3.327
6.610
-7.475
B
C6
DG
11
ATOM
B
C6
DG
1
3
1.00
1
C
31.16
2.141
6.750
-7.763
B
O6
DG
11
ATOM
B
O6
DG
1
3
1.00
1
O
26.05
4.203
7.678
-7.608
B
N1
DG
11
ATOM
B
N1
DG
1
3
1.00
1
N
28.81
5.540
7.651
-7.283
B
C2
DG
11
ATOM
B
C2
DG
1
3
1.00
1
C
26.27
6.222
8.792
-7.488
B
N2
DG
11
ATOM
B
N2
DG
1
3
1.00
1
N
27.00
6.158
6.587
-6.796
B
N3
DG
11
ATOM
B
N3
DG
1
3
1.00
1
N
28.98
5.319
5.534
-6.675
B
C4
DG
11
ATOM
B
C4
DG
1
3
1.00
1
C
35.47
9.276
3.603
-2.327
B
P
DA
12
ATOM
B
P
DA
1
4
1.00
1
P
38.46
10.574
2.991
-1.959
B
OP1
DA
12
ATOM
B
OP1
DA
1
4
1.00
1
O
38.48
8.027
3.114
-1.708
B
OP2
DA
12
ATOM
B
OP2
DA
1
4
1.00
1
O
38.17
9.396
5.174
-2.106
B
O5'
DA
12
ATOM
B
O5'
DA
1
4
1.00
1
O
33.36
10.309
5.944
-2.897
B
C5'
DA
12
ATOM
B
C5'
DA
1
4
1.00
1
C
27.53
9.738
7.313
-3.181
B
C4'
DA
12
ATOM
B
C4'
DA
1
4
1.00
1
C
27.48
8.679
7.274
-4.162
B
O4'
DA
12
ATOM
B
O4'
DA
1
4
1.00
1
O
34.47
9.104
7.951
-1.959
B
C3'
DA
12
ATOM
B
C3'
DA
1
4
1.00
1
C
33.99
10.119
8.534
-1.147
B
O3'
DA
12
ATOM
B
O3'
DA
1
4
1.00
1
O
29.80
8.165
8.967
-2.579
B
C2'
DA
12
ATOM
B
C2'
DA
1
4
1.00
1
C
29.84
7.685
8.241
-3.835
B
C1'
DA
12
ATOM
B
C1'
DA
1
4
1.00
1
C
30.12
6.414
7.532
-3.683
B
N9
DA
12
ATOM
B
N9
DA
1
4
1.00
1
N
23.38
6.219
6.264
-3.205
B
C8
DA
12
ATOM
B
C8
DA
1
4
1.00
1
C
27.98
4.966
5.881
-3.211
B
N7
DA
12
ATOM
B
N7
DA
1
4
1.00
1
N
26.73
4.286
6.977
-3.717
B
C5
DA
12
ATOM
B
C5
DA
1
4
1.00
1
C
27.29
2.924
7.208
-3.967
B
C6
DA
12
ATOM
B
C6
DA
1
4
1.00
1
C
31.02
1.961
6.316
-3.730
B
N6
DA
12
ATOM
B
N6
DA
1
4
1.00
1
N
33.38
2.577
8.405
-4.476
B
N1
DA
12
ATOM
B
N1
DA
1
4
1.00
1
N
30.96
3.544
9.305
-4.715
B
C2
DA
12
ATOM
B
C2
DA
1
4
1.00
1
C
36.49
4.860
9.207
-4.516
B
N3
DA
12
ATOM
B
N3
DA
1
4
1.00
1
N
26.42
5.167
8.003
-4.010
B
C4
DA
12
ATOM
B
C4
DA
1
4
1.00
1
C
33.97
9.861
8.715
0.422
B
P
DG
13
ATOM
B
P
DG
1
5
1.00
1
P
37.27
11.117
9.163
1.071
B
OP1
DG
13
ATOM
B
OP1
DG
1
5
1.00
1
O
38.20
9.194
7.484
0.894
B
OP2
DG
13
ATOM
B
OP2
DG
1
5
1.00
1
O
42.30
8.828
9.917
0.459
B
O5'
DG
13
ATOM
B
O5'
DG
1
5
1.00
1
O
34.71
7.515
9.739
0.926
B
C5'
DG
13
ATOM
B
C5'
DG
1
5
1.00
1
C
34.85
7.228
10.767
1.991
B
C4'
DG
13
ATOM
B
C4'
DG
1
5
1.00
1
C
31.60
5.847
10.657
2.379
B
O4'
DG
13
ATOM
B
O4'
DG
1
5
1.00
1
O
28.06
8.027
10.552
3.274
B
C3'
DG
13
ATOM
B
C3'
DG
1
5
1.00
1
C
40.73
8.156
11.783
3.994
B
O3'
DG
13
ATOM
B
O3'
DG
1
5
1.00
1
O
36.13
7.159
9.570
4.037
B
C2'
DG
13
ATOM
B
C2'
DG
1
5
1.00
1
C
33.37
5.743
9.967
3.619
B
C1'
DG
13
ATOM
B
C1'
DG
1
5
1.00
1
C
31.32
4.818
8.858
3.429
B
N9
DG
13
ATOM
B
N9
DG
1
5
1.00
1
N
37.68
5.029
7.530
3.724
B
C8
DG
13
ATOM
B
C8
DG
1
5
1.00
1
C
38.40
3.988
6.783
3.489
B
N7
DG
13
ATOM
B
N7
DG
1
5
1.00
1
N
39.49
3.032
7.666
3.001
B
C5
DG
13
ATOM
B
C5
DG
1
5
1.00
1
C
32.96
1.691
7.441
2.600
B
C6
DG
13
ATOM
B
C6
DG
1
5
1.00
1
C
35.56
1.050
6.389
2.611
B
O6
DG
13
ATOM
B
O6
DG
1
5
1.00
1
O
34.76
1.087
8.613
2.161
B
N1
DG
13
ATOM
B
N1
DG
1
5
1.00
1
N
30.93
1.690
9.844
2.119
B
C2
DG
13
ATOM
B
C2
DG
1
5
1.00
1
C
28.46
0.950
10.851
1.644
B
N2
DG
13
ATOM
B
N2
DG
1
5
1.00
1
N
35.49
2.931
10.069
2.509
B
N3
DG
13
ATOM
B
N3
DG
1
5
1.00
1
N
29.49
3.540
8.941
2.938
B
C4
DG
13
ATOM
B
C4
DG
1
5
1.00
1
C
40.54
9.297
11.938
5.119
B
P
DA
14
ATOM
B
P
DA
1
6
1.00
1
P
49.51
10.448
11.061
4.800
B
OP1
DA
14
ATOM
B
OP1
DA
1
6
1.00
1
O
44.19
8.616
11.800
6.430
B
OP2
DA
14
ATOM
B
OP2
DA
1
6
1.00
1
O
39.69
9.762
13.449
4.963
B
O5'
DA
14
ATOM
B
O5'
DA
1
6
1.00
1
O
38.24
8.847
14.502
5.207
B
C5'
DA
14
ATOM
B
C5'
DA
1
6
1.00
1
C
31.33
9.565
15.830
5.233
B
C4'
DA
14
ATOM
B
C4'
DA
1
6
1.00
1
C
33.38
8.664
16.746
5.884
B
O4'
DA
14
ATOM
B
O4'
DA
1
6
1.00
1
O
33.86
10.800
15.868
6.124
B
C3'
DA
14
ATOM
B
C3'
DA
1
6
1.00
1
C
37.55
11.529
17.077
5.865
B
O3'
DA
14
ATOM
B
O3'
DA
1
6
1.00
1
O
32.12
10.185
15.900
7.511
B
C2'
DA
14
ATOM
B
C2'
DA
1
6
1.00
1
C
32.80
8.884
16.678
7.296
B
C1'
DA
14
ATOM
B
C1'
DA
1
6
1.00
1
C
41.38
7.704
16.064
7.902
B
N9
DA
14
ATOM
B
N9
DA
1
6
1.00
1
N
29.81
7.452
14.730
8.118
B
C8
DA
14
ATOM
B
C8
DA
1
6
1.00
1
C
30.66
6.282
14.494
8.661
B
N7
DA
14
ATOM
B
N7
DA
1
6
1.00
1
N
40.04
5.729
15.757
8.820
B
C5
DA
14
ATOM
B
C5
DA
1
6
1.00
1
C
32.27
4.498
16.190
9.336
B
C6
DA
14
ATOM
B
C6
DA
1
6
1.00
1
C
40.50
3.562
15.365
9.811
B
N6
DA
14
ATOM
B
N6
DA
1
6
1.00
1
N
42.45
4.256
17.518
9.350
B
N1
DA
14
ATOM
B
N1
DA
1
6
1.00
1
N
31.26
5.196
18.347
8.875
B
C2
DA
14
ATOM
B
C2
DA
1
6
1.00
1
C
38.05
6.389
18.061
8.362
B
N3
DA
14
ATOM
B
N3
DA
1
6
1.00
1
N
37.56
6.597
16.732
8.363
B
C4
DA
14
ATOM
B
C4
DA
1
6
1.00
1
C
40.80
12.839
17.438
6.732
B
P
DG
15
ATOM
B
P
DG
1
7
1.00
1
P
47.24
13.523
18.566
6.054
B
OP1
DG
15
ATOM
B
OP1
DG
1
7
1.00
1
O
37.13
13.586
16.191
7.003
B
OP2
DG
15
ATOM
B
OP2
DG
1
7
1.00
1
O
34.30
12.253
17.984
8.107
B
O5'
DG
15
ATOM
B
O5'
DG
1
7
1.00
1
O
39.89
11.430
19.148
8.129
B
C5'
DG
15
ATOM
B
C5'
DG
1
7
1.00
1
C
43.49
10.709
19.258
9.453
B
C4'
DG
15
ATOM
B
C4'
DG
1
7
1.00
1
C
44.19
9.855
18.115
9.635
B
O4'
DG
15
ATOM
B
O4'
DG
1
7
1.00
1
O
45.81
11.609
19.304
10.688
B
C3'
DG
15
ATOM
B
C3'
DG
1
7
1.00
1
C
43.26
11.653
20.647
11.176
B
O3'
DG
15
ATOM
B
O3'
DG
1
7
1.00
1
O
40.05
10.952
18.362
11.693
B
C2'
DG
15
ATOM
B
C2'
DG
1
7
1.00
1
C
46.61
9.662
17.910
11.021
B
C1'
DG
15
ATOM
B
C1'
DG
1
7
1.00
1
C
36.47
9.334
16.498
11.216
B
N9
DG
15
ATOM
B
N9
DG
1
7
1.00
1
N
30.89
10.163
15.422
11.024
B
C8
DG
15
ATOM
B
C8
DG
1
7
1.00
1
C
28.37
9.576
14.278
11.250
B
N7
DG
15
ATOM
B
N7
DG
1
7
1.00
1
N
29.99
8.285
14.622
11.619
B
C5
DG
15
ATOM
B
C5
DG
1
7
1.00
1
C
36.18
7.183
13.803
11.984
B
C6
DG
15
ATOM
B
C6
DG
1
7
1.00
1
C
37.85
7.127
12.564
12.046
B
O6
DG
15
ATOM
B
O6
DG
1
7
1.00
1
O
28.34
6.062
14.566
12.297
B
N1
DG
15
ATOM
B
N1
DG
1
7
1.00
1
N
33.39
6.006
15.935
12.261
B
C2
DG
15
ATOM
B
C2
DG
1
7
1.00
1
C
38.03
4.834
16.486
12.605
B
N2
DG
15
ATOM
B
N2
DG
1
7
1.00
1
N
39.07
7.022
16.707
11.916
B
N3
DG
15
ATOM
B
N3
DG
1
7
1.00
1
N
34.00
8.121
15.990
11.612
B
C4
DG
15
ATOM
B
C4
DG
1
7
1.00
1
C
42.57
12.423
20.980
12.544
B
P
DC
16
ATOM
B
P
DC
1
8
1.00
1
P
45.06
12.834
22.403
12.496
B
OP1
DC
16
ATOM
B
OP1
DC
1
8
1.00
1
O
37.17
13.452
19.932
12.755
B
OP2
DC
16
ATOM
B
OP2
DC
1
8
1.00
1
O
39.93
11.291
20.831
13.656
B
O5'
DC
16
ATOM
B
O5'
DC
1
8
1.00
1
O
40.31
10.171
21.715
13.669
B
C5'
DC
16
ATOM
B
C5'
DC
1
8
1.00
1
C
40.20
9.105
21.204
14.609
B
C4'
DC
16
ATOM
B
C4'
DC
1
8
1.00
1
C
42.96
8.565
19.953
14.146
B
O4'
DC
16
ATOM
B
O4'
DC
1
8
1.00
1
O
40.62
9.573
20.901
16.025
B
C3'
DC
16
ATOM
B
C3'
DC
1
8
1.00
1
C
41.68
9.816
22.072
16.800
B
O3'
DC
16
ATOM
B
O3'
DC
1
8
1.00
1
O
34.36
8.486
19.970
16.533
B
C2'
DC
16
ATOM
B
C2'
DC
1
8
1.00
1
C
40.16
7.948
19.307
15.256
B
C1'
DC
16
ATOM
B
C1'
DC
1
8
1.00
1
C
34.23
8.229
17.868
15.161
B
N1
DC
16
ATOM
B
N1
DC
1
8
1.00
1
N
31.40
7.184
16.971
15.369
B
C2
DC
16
ATOM
B
C2
DC
1
8
1.00
1
C
33.16
6.056
17.418
15.612
B
O2
DC
16
ATOM
B
O2
DC
1
8
1.00
1
O
35.60
7.425
15.645
15.296
B
N3
DC
16
ATOM
B
N3
DC
1
8
1.00
1
N
30.55
8.655
15.205
15.024
B
C4
DC
16
ATOM
B
C4
DC
1
8
1.00
1
C
28.95
8.847
13.881
14.957
B
N4
DC
16
ATOM
B
N4
DC
1
8
1.00
1
N
32.45
9.744
16.099
14.806
B
C5
DC
16
ATOM
B
C5
DC
1
8
1.00
1
C
36.38
9.487
17.411
14.882
B
C6
DC
16
ATOM
B
C6
DC
1
8
1.00
1
C
29.35
0.000
5.739
0.000
A
K
K
104
HETATM
C
K
K
2
0.50
1
K
43.71
14.102
2.657
-13.061
A
O
HOH
17
HETATM
D
O
HOH
3
1.00
1
O
35.37
-0.910
7.866
9.724
A
O
HOH
20
HETATM
D
O
HOH
3
1.00
1
O
48.42
5.724
7.304
12.778
A
O
HOH
21
HETATM
D
O
HOH
3
1.00
1
O
35.10
3.918
12.799
1.642
A
O
HOH
22
HETATM
D
O
HOH
3
1.00
1
O
34.81
2.931
5.139
0.447
A
O
HOH
25
HETATM
D
O
HOH
3
1.00
1
O
45.35
0.983
7.202
16.518
A
O
HOH
26
HETATM
D
O
HOH
3
1.00
1
O
36.19
11.664
3.056
-7.411
A
O
HOH
30
HETATM
D
O
HOH
3
1.00
1
O
43.67
-3.159
12.237
6.462
A
O
HOH
31
HETATM
D
O
HOH
3
1.00
1
O
40.84
2.762
16.026
-1.601
A
O
HOH
32
HETATM
D
O
HOH
3
1.00
1
O
42.64
5.459
8.398
9.898
A
O
HOH
33
HETATM
D
O
HOH
3
1.00
1
O
49.96
-3.061
10.138
8.572
A
O
HOH
36
HETATM
D
O
HOH
3
1.00
1
O
60.48
2.871
7.458
7.976
A
O
HOH
39
HETATM
D
O
HOH
3
1.00
1
O
47.00
-1.869
9.960
12.381
A
O
HOH
41
HETATM
D
O
HOH
3
1.00
1
O
41.76
5.499
8.532
15.825
A
O
HOH
42
HETATM
D
O
HOH
3
1.00
1
O
40.01
14.874
5.009
-9.081
A
O
HOH
43
HETATM
D
O
HOH
3
1.00
1
O
39.61
7.845
11.265
-9.288
A
O
HOH
46
HETATM
D
O
HOH
3
1.00
1
O
55.24
14.364
8.363
-3.340
A
O
HOH
47
HETATM
D
O
HOH
3
1.00
1
O
53.83
3.777
19.920
2.988
A
O
HOH
49
HETATM
D
O
HOH
3
1.00
1
O
68.39
-0.878
7.372
13.090
A
O
HOH
51
HETATM
D
O
HOH
3
1.00
1
O
53.82
-7.513
17.142
8.004
A
O
HOH
52
HETATM
D
O
HOH
3
1.00
1
O
50.49
5.031
9.095
18.799
A
O
HOH
53
HETATM
D
O
HOH
3
1.00
1
O
52.51
-5.569
8.419
17.268
A
O
HOH
54
HETATM
D
O
HOH
3
1.00
1
O
58.79
14.287
13.774
-8.343
A
O
HOH
55
HETATM
D
O
HOH
3
1.00
1
O
53.19
2.715
7.870
19.990
A
O
HOH
56
HETATM
D
O
HOH
3
1.00
1
O
65.42
-4.121
14.486
18.561
A
O
HOH
58
HETATM
D
O
HOH
3
1.00
1
O
61.59
-6.219
9.641
20.012
A
O
HOH
59
HETATM
D
O
HOH
3
1.00
1
O
51.37
1.859
15.091
1.572
A
O
HOH
62
HETATM
D
O
HOH
3
1.00
1
O
49.81
-7.696
14.461
10.146
A
O
HOH
63
HETATM
D
O
HOH
3
1.00
1
O
62.17
5.784
21.295
5.025
A
O
HOH
66
HETATM
D
O
HOH
3
1.00
1
O
58.08
8.907
10.833
16.656
A
O
HOH
67
HETATM
D
O
HOH
3
1.00
1
O
51.58
6.968
8.272
21.210
A
O
HOH
68
HETATM
D
O
HOH
3
1.00
1
O
45.50
2.962
23.994
4.131
A
O
HOH
69
HETATM
D
O
HOH
3
1.00
1
O
52.65
13.941
5.834
-2.051
A
O
HOH
70
HETATM
D
O
HOH
3
1.00
1
O
57.15
-2.802
8.435
20.492
A
O
HOH
71
HETATM
D
O
HOH
3
1.00
1
O
58.96
9.438
9.960
19.471
A
O
HOH
72
HETATM
D
O
HOH
3
1.00
1
O
49.94
4.052
5.178
17.294
A
O
HOH
74
HETATM
D
O
HOH
3
1.00
1
O
43.91
5.983
10.364
7.034
A
O
HOH
76
HETATM
D
O
HOH
3
1.00
1
O
50.98
9.618
16.439
1.352
A
O
HOH
78
HETATM
D
O
HOH
3
1.00
1
O
52.70
11.710
11.848
18.127
A
O
HOH
79
HETATM
D
O
HOH
3
1.00
1
O
36.29
12.702
11.264
20.744
A
O
HOH
80
HETATM
D
O
HOH
3
1.00
1
O
51.08
-6.763
16.016
19.015
A
O
HOH
83
HETATM
D
O
HOH
3
1.00
1
O
48.80
4.071
24.814
6.834
A
O
HOH
85
HETATM
D
O
HOH
3
1.00
1
O
65.65
-10.116
16.779
5.748
A
O
HOH
87
HETATM
D
O
HOH
3
1.00
1
O
55.84
-8.522
10.963
18.887
A
O
HOH
89
HETATM
D
O
HOH
3
1.00
1
O
87.06
-2.252
8.608
25.524
A
O
HOH
91
HETATM
D
O
HOH
3
1.00
1
O
74.82
-4.332
7.322
22.611
A
O
HOH
94
HETATM
D
O
HOH
3
1.00
1
O
43.77
2.750
2.305
-10.164
B
O
HOH
18
HETATM
E
O
HOH
3
1.00
1
O
33.88
6.443
11.158
-5.963
B
O
HOH
19
HETATM
E
O
HOH
3
1.00
1
O
52.40
2.516
18.904
11.213
B
O
HOH
23
HETATM
E
O
HOH
3
1.00
1
O
50.22
0.785
-1.139
-9.360
B
O
HOH
24
HETATM
E
O
HOH
3
1.00
1
O
52.89
6.859
3.988
0.383
B
O
HOH
27
HETATM
E
O
HOH
3
1.00
1
O
57.20
9.706
7.472
9.257
B
O
HOH
28
HETATM
E
O
HOH
3
1.00
1
O
53.54
0.000
0.000
2.710
B
O
HOH
29
HETATM
E
O
HOH
3
0.50
1
O
63.51
8.030
22.482
18.680
B
O
HOH
34
HETATM
E
O
HOH
3
1.00
1
O
69.45
14.811
21.025
8.106
B
O
HOH
35
HETATM
E
O
HOH
3
1.00
1
O
48.49
3.852
0.222
-5.448
B
O
HOH
37
HETATM
E
O
HOH
3
1.00
1
O
61.99
5.615
22.447
16.983
B
O
HOH
38
HETATM
E
O
HOH
3
1.00
1
O
43.84
7.422
19.959
20.028
B
O
HOH
40
HETATM
E
O
HOH
3
1.00
1
O
45.49
7.903
18.869
4.351
B
O
HOH
44
HETATM
E
O
HOH
3
1.00
1
O
60.67
7.895
6.218
2.783
B
O
HOH
45
HETATM
E
O
HOH
3
1.00
1
O
49.72
3.804
3.790
-1.981
B
O
HOH
48
HETATM
E
O
HOH
3
1.00
1
O
60.00
2.485
1.418
-0.377
B
O
HOH
50
HETATM
E
O
HOH
3
1.00
1
O
43.65
10.744
11.872
8.410
B
O
HOH
57
HETATM
E
O
HOH
3
1.00
1
O
72.36
15.880
17.045
11.512
B
O
HOH
60
HETATM
E
O
HOH
3
1.00
1
O
59.42
12.033
19.257
3.730
B
O
HOH
61
HETATM
E
O
HOH
3
1.00
1
O
57.89
10.507
-1.634
-8.965
B
O
HOH
64
HETATM
E
O
HOH
3
1.00
1
O
48.24
5.701
20.080
22.325
B
O
HOH
65
HETATM
E
O
HOH
3
1.00
1
O
55.06
4.769
22.303
8.787
B
O
HOH
73
HETATM
E
O
HOH
3
1.00
1
O
73.27
11.790
4.367
0.085
B
O
HOH
75
HETATM
E
O
HOH
3
1.00
1
O
71.43
12.539
10.405
3.409
B
O
HOH
77
HETATM
E
O
HOH
3
1.00
1
O
50.10
14.062
22.542
4.389
B
O
HOH
81
HETATM
E
O
HOH
3
1.00
1
O
59.62
16.062
9.490
4.144
B
O
HOH
82
HETATM
E
O
HOH
3
1.00
1
O
66.45
3.242
23.534
10.947
B
O
HOH
84
HETATM
E
O
HOH
3
1.00
1
O
63.40
8.505
3.046
4.060
B
O
HOH
86
HETATM
E
O
HOH
3
1.00
1
O
61.92
3.255
5.357
5.478
B
O
HOH
88
HETATM
E
O
HOH
3
1.00
1
O
59.01
7.408
21.437
9.650
B
O
HOH
90
HETATM
E
O
HOH
3
1.00
1
O
57.82
15.717
6.732
5.155
B
O
HOH
92
HETATM
E
O
HOH
3
1.00
1
O
55.15
8.250
0.994
2.294
B
O
HOH
93
HETATM
E
O
HOH
3
1.00
1
O
58.40
11.029
8.698
5.636
B
O
HOH
95
HETATM
E
O
HOH
3
1.00
1
O
50.98
6.513
-0.779
1.151
B
O
HOH
96
HETATM
E
O
HOH
3
1.00
1
O
88.19
0.364
3.541
-2.249
B
O
HOH
97
HETATM
E
O
HOH
3
1.00
1
O
90.54
0.481
3.894
-5.504
B
O
HOH
98
HETATM
E
O
HOH
3
1.00
1
O
51.21
12.791
9.104
7.399
B
O
HOH
99
HETATM
E
O
HOH
3
1.00
1
O
77.63
4.521
4.331
2.811
B
O
HOH
100
HETATM
E
O
HOH
3
1.00
1
O
80.68
0.469
3.642
-14.699
B
O
HOH
101
HETATM
E
O
HOH
3
1.00
1
O
70.74
2.331
2.290
2.577
B
O
HOH
102
HETATM
E
O
HOH
3
1.00
1
O
70.66
6.806
23.165
12.306
B
O
HOH
103
HETATM
E
O
HOH
3
1.00
1
O
0.028860
0.000000
0.000000
0.000000
0.023535
0.000000
0.000000
0.000000
0.015605
0.00000
0.00000
0.00000
Kondo, J.
Umeda, S.
Sunami, T.
Takenaka, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
34.650
42.490
64.080
C9 H13 I N3 O7 P
433.094
n
5-IODO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
K 1
39.098
POTASSIUM ION
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
O
N
16
N
N
N
17
N
C
N
18
N
N
N
19
N
C
N
20
N
C
N
21
N
I
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
Y
51
N
C
N
52
N
N
Y
53
N
N
Y
54
N
C
Y
55
N
N
Y
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
N
83
N
N
N
84
N
C
N
85
N
O
N
86
N
N
N
87
N
C
N
88
N
N
N
89
N
C
N
90
N
C
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
O
N
106
N
P
N
107
N
O
N
108
N
O
N
109
N
O
N
110
N
C
N
111
R
C
N
112
N
O
N
113
S
C
N
114
N
O
N
115
N
C
N
116
R
C
Y
117
N
N
Y
118
N
C
Y
119
N
N
Y
120
N
C
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
N
N
126
N
N
Y
127
N
C
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
K
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
Y
64
N
sing
Y
65
N
doub
N
66
N
sing
Y
67
N
doub
N
68
N
sing
N
69
N
sing
Y
70
N
sing
Y
71
N
doub
N
72
N
sing
Y
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
Y
132
N
sing
Y
133
N
sing
Y
134
N
doub
N
135
N
sing
Y
136
N
sing
N
137
N
sing
Y
138
N
doub
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
32
2541
2549
10.1093/nar/gkh575
15133122
Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats
2004
10.2210/pdb1v3o/pdb
pdb_00001v3o
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2001-03-27
OXFORD PX210
SINGLE WAVELENGTH
M
x-ray
1
0.90
1.0
BL44XU
SPring-8
0.90
SYNCHROTRON
SPRING-8 BEAMLINE BL44XU
2602.540
5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3'
2
syn
polymer
39.098
POTASSIUM ION
1
syn
non-polymer
18.015
water
87
nat
water
no
yes
(DG)(C38)(DG)(DA)(DG)(DA)(DG)(DC)
GCGAGAGC
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
1
2.17
43.37
VAPOR DIFFUSION, HANGING DROP
7.0
2-methyl-2,4-pentanediol, spermine tetrahydrochloride, sodium chloride, potassium chloride, sodium cacodylate , pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
2-methyl-2,4-pentanediol
1
spermine tetrahydrochloride
1
sodium chloride
1
potassium chloride
1
sodium cacodylate
1
sodium chloride
2
potassium chloride
2
sodium cacodylate
2
-2.320
1
19
A
1
B
16
1.266
A_DG1:DC16_B
1
3.088
-0.406
0.178
-0.153
15.778
1
19
A
2
B
15
0.948
A_C382:DG15_B
2
7.229
0.281
-0.137
-0.050
35.446
9
11
A
3
B
14
14.482
A_DG3:DA14_B
3
-12.617
6.379
1.365
-4.123
-23.704
9
11
A
6
B
11
18.192
A_DA6:DG11_B
4
-14.916
-6.288
1.742
-4.203
-17.800
1
19
A
7
B
10
-0.555
A_DG7:C3810_B
5
3.390
-0.193
-0.293
-0.073
-2.851
1
19
A
8
B
9
-1.368
A_DC8:DG9_B
6
4.111
-0.050
0.161
-0.199
2.937
26.837
A
A
1
2
7.917
B
B
16
15
2.969
3.661
0.305
-0.145
AA_DG1C382:DG15DC16_BB
1
1.867
-4.039
26.526
-1.169
-0.219
3.324
56.737
A
A
2
3
6.226
B
B
15
14
3.136
5.905
0.143
2.084
AA_C382DG3:DA14DG15_BB
2
2.907
-3.065
56.386
1.868
0.010
3.611
55.072
A
A
6
7
11.277
B
B
11
10
3.418
10.372
-1.026
1.610
AA_DA6DG7:C3810DG11_BB
3
1.927
-2.095
54.130
1.075
1.233
3.037
29.611
A
A
7
8
-1.454
B
B
10
9
3.000
-0.742
-0.522
0.048
AA_DG7DC8:DG9C3810_BB
4
-3.445
6.756
29.405
0.238
0.347
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Other
Data collection
Database references
Derived calculations
Refinement description
1
0
2004-06-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2014-04-16
1
4
2023-10-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The same structure, Br-derivative
The same structure, I-derivative, with I-motif of G-quartet
PDBJ
Y
PDBJ
2003-11-03
REL
K
POTASSIUM ION
HOH
water
1V3N
PDB ENTRY 1V3N
PDB
experimental model
K
104
2
K
K
104
A
HOH
17
3
HOH
HOH
17
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
36
3
HOH
HOH
36
A
HOH
39
3
HOH
HOH
39
A
HOH
41
3
HOH
HOH
41
A
HOH
42
3
HOH
HOH
42
A
HOH
43
3
HOH
HOH
43
A
HOH
46
3
HOH
HOH
46
A
HOH
47
3
HOH
HOH
47
A
HOH
49
3
HOH
HOH
49
A
HOH
51
3
HOH
HOH
51
A
HOH
52
3
HOH
HOH
52
A
HOH
53
3
HOH
HOH
53
A
HOH
54
3
HOH
HOH
54
A
HOH
55
3
HOH
HOH
55
A
HOH
56
3
HOH
HOH
56
A
HOH
58
3
HOH
HOH
58
A
HOH
59
3
HOH
HOH
59
A
HOH
62
3
HOH
HOH
62
A
HOH
63
3
HOH
HOH
63
A
HOH
66
3
HOH
HOH
66
A
HOH
67
3
HOH
HOH
67
A
HOH
68
3
HOH
HOH
68
A
HOH
69
3
HOH
HOH
69
A
HOH
70
3
HOH
HOH
70
A
HOH
71
3
HOH
HOH
71
A
HOH
72
3
HOH
HOH
72
A
HOH
74
3
HOH
HOH
74
A
HOH
76
3
HOH
HOH
76
A
HOH
78
3
HOH
HOH
78
A
HOH
79
3
HOH
HOH
79
A
HOH
80
3
HOH
HOH
80
A
HOH
83
3
HOH
HOH
83
A
HOH
85
3
HOH
HOH
85
A
HOH
87
3
HOH
HOH
87
A
HOH
89
3
HOH
HOH
89
A
HOH
91
3
HOH
HOH
91
A
HOH
94
3
HOH
HOH
94
A
HOH
18
3
HOH
HOH
18
B
HOH
19
3
HOH
HOH
19
B
HOH
23
3
HOH
HOH
23
B
HOH
24
3
HOH
HOH
24
B
HOH
27
3
HOH
HOH
27
B
HOH
28
3
HOH
HOH
28
B
HOH
29
3
HOH
HOH
29
B
HOH
34
3
HOH
HOH
34
B
HOH
35
3
HOH
HOH
35
B
HOH
37
3
HOH
HOH
37
B
HOH
38
3
HOH
HOH
38
B
HOH
40
3
HOH
HOH
40
B
HOH
44
3
HOH
HOH
44
B
HOH
45
3
HOH
HOH
45
B
HOH
48
3
HOH
HOH
48
B
HOH
50
3
HOH
HOH
50
B
HOH
57
3
HOH
HOH
57
B
HOH
60
3
HOH
HOH
60
B
HOH
61
3
HOH
HOH
61
B
HOH
64
3
HOH
HOH
64
B
HOH
65
3
HOH
HOH
65
B
HOH
73
3
HOH
HOH
73
B
HOH
75
3
HOH
HOH
75
B
HOH
77
3
HOH
HOH
77
B
HOH
81
3
HOH
HOH
81
B
HOH
82
3
HOH
HOH
82
B
HOH
84
3
HOH
HOH
84
B
HOH
86
3
HOH
HOH
86
B
HOH
88
3
HOH
HOH
88
B
HOH
90
3
HOH
HOH
90
B
HOH
92
3
HOH
HOH
92
B
HOH
93
3
HOH
HOH
93
B
HOH
95
3
HOH
HOH
95
B
HOH
96
3
HOH
HOH
96
B
HOH
97
3
HOH
HOH
97
B
HOH
98
3
HOH
HOH
98
B
HOH
99
3
HOH
HOH
99
B
HOH
100
3
HOH
HOH
100
B
HOH
101
3
HOH
HOH
101
B
HOH
102
3
HOH
HOH
102
B
HOH
103
3
HOH
HOH
103
B
G
1
n
1
DG
1
A
CID
2
n
2
C38
2
A
G
3
n
3
DG
3
A
A
4
n
4
DA
4
A
G
5
n
5
DG
5
A
A
6
n
6
DA
6
A
G
7
n
7
DG
7
A
C
8
n
8
DC
8
A
G
9
n
1
DG
9
B
CID
10
n
2
C38
10
B
G
11
n
3
DG
11
B
A
12
n
4
DA
12
B
G
13
n
5
DG
13
B
A
14
n
6
DA
14
B
G
15
n
7
DG
15
B
C
16
n
8
DC
16
B
author_defined_assembly
4
tetrameric
A
DG
5
A
O6
DG
5
1_555
A
K
104
C
K
K
1_555
A
DG
5
A
O6
DG
5
3_555
62.6
A
DG
5
A
O6
DG
5
1_555
A
K
104
C
K
K
1_555
A
HOH
25
D
O
HOH
1_555
78.1
A
DG
5
A
O6
DG
5
3_555
A
K
104
C
K
K
1_555
A
HOH
25
D
O
HOH
1_555
123.0
A
DG
5
A
O6
DG
5
1_555
A
K
104
C
K
K
1_555
A
HOH
25
D
O
HOH
3_555
123.0
A
DG
5
A
O6
DG
5
3_555
A
K
104
C
K
K
1_555
A
HOH
25
D
O
HOH
3_555
78.1
A
HOH
25
D
O
HOH
1_555
A
K
104
C
K
K
1_555
A
HOH
25
D
O
HOH
3_555
157.1
A
DG
5
A
O6
DG
5
1_555
A
K
104
C
K
K
1_555
B
DG
13
B
O6
DG
5
1_555
85.0
A
DG
5
A
O6
DG
5
3_555
A
K
104
C
K
K
1_555
B
DG
13
B
O6
DG
5
1_555
72.7
A
HOH
25
D
O
HOH
1_555
A
K
104
C
K
K
1_555
B
DG
13
B
O6
DG
5
1_555
63.8
A
HOH
25
D
O
HOH
3_555
A
K
104
C
K
K
1_555
B
DG
13
B
O6
DG
5
1_555
122.0
A
DG
5
A
O6
DG
5
1_555
A
K
104
C
K
K
1_555
B
DG
13
B
O6
DG
5
3_555
72.7
A
DG
5
A
O6
DG
5
3_555
A
K
104
C
K
K
1_555
B
DG
13
B
O6
DG
5
3_555
85.0
A
HOH
25
D
O
HOH
1_555
A
K
104
C
K
K
1_555
B
DG
13
B
O6
DG
5
3_555
122.0
A
HOH
25
D
O
HOH
3_555
A
K
104
C
K
K
1_555
B
DG
13
B
O6
DG
5
3_555
63.8
B
DG
13
B
O6
DG
5
1_555
A
K
104
C
K
K
1_555
B
DG
13
B
O6
DG
5
3_555
154.0
A
DG
5
A
O6
DG
5
1_555
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
1_555
109.7
A
DG
5
A
O6
DG
5
3_555
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
1_555
148.1
A
HOH
25
D
O
HOH
1_555
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
1_555
81.7
A
HOH
25
D
O
HOH
3_555
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
1_555
82.5
B
DG
13
B
O6
DG
5
1_555
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
1_555
139.2
B
DG
13
B
O6
DG
5
3_555
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
1_555
63.6
A
DG
5
A
O6
DG
5
1_555
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
3_555
148.1
A
DG
5
A
O6
DG
5
3_555
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
3_555
109.7
A
HOH
25
D
O
HOH
1_555
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
3_555
82.5
A
HOH
25
D
O
HOH
3_555
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
3_555
81.7
B
DG
13
B
O6
DG
5
1_555
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
3_555
63.6
B
DG
13
B
O6
DG
5
3_555
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
3_555
139.2
B
HOH
97
E
O
HOH
1_555
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
3_555
92.1
A
C38
2
A
C38
2
DC
B
C38
10
B
C38
2
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
A
K
104
C
K
1
B
HOH
29
E
HOH
0.296
0.262
1.7
9.0
528
5414
5063
93.5
RANDOM
1
3.0
MOLECULAR REPLACEMENT
PDB ENTRY 1V3N
G. PARKINSON ET AL., (1996) ACTACRYST. D52, 57-64
0.40
5.0
0.60
1.7
9.0
87
420
1
332
0
0.004
0.9
23.6
0.8
0.6045
0.5554
1.76
50
90.4
1.7
35
1V3O
5463
5269
0.0
0.0
0.096
1
4.2
96.5
0.137
1.7
1.76
1.9
527
1
100.0
data scaling
d*TREK
data scaling
SCALA
phasing
AMoRE
refinement
CNS
1.0
data reduction
d*TREK
data scaling
CCP4
(SCALA)
Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
The biological assembly is a quadruplex generated from the duplex in the asymmetric unit by the operations: x, y, z and -x, y, -z.
covale
1.606
both
A
DG
1
A
O3'
DG
1
1_555
A
C38
2
A
P
C38
2
1_555
covale
1.604
one
A
C38
2
A
O3'
C38
2
1_555
A
DG
3
A
P
DG
3
1_555
covale
1.609
both
B
DG
9
B
O3'
DG
1
1_555
B
C38
10
B
P
C38
2
1_555
covale
1.604
one
B
C38
10
B
O3'
C38
2
1_555
B
DG
11
B
P
DG
3
1_555
metalc
2.674
A
DG
5
A
O6
DG
5
1_555
A
K
104
C
K
K
1_555
metalc
2.674
A
DG
5
A
O6
DG
5
3_555
A
K
104
C
K
K
1_555
metalc
3.025
A
HOH
25
D
O
HOH
1_555
A
K
104
C
K
K
1_555
metalc
3.025
A
HOH
25
D
O
HOH
3_555
A
K
104
C
K
K
1_555
metalc
2.888
A
K
104
C
K
K
1_555
B
DG
13
B
O6
DG
5
1_555
metalc
2.888
A
K
104
C
K
K
1_555
B
DG
13
B
O6
DG
5
3_555
metalc
3.166
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
1_555
metalc
3.166
A
K
104
C
K
K
1_555
B
HOH
97
E
O
HOH
3_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
16
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
16
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
16
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
C38
2
A
N3
C38
2
1_555
B
DG
15
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
A
C38
2
A
N4
C38
2
1_555
B
DG
15
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
C38
2
A
O2
C38
2
1_555
B
DG
15
B
N2
DG
7
1_555
hydrog
TYPE_11_PAIR
A
DG
3
A
N2
DG
3
1_555
B
DA
14
B
N7
DA
6
1_555
hydrog
TYPE_11_PAIR
A
DG
3
A
N3
DG
3
1_555
B
DA
14
B
N6
DA
6
1_555
hydrog
TYPE_11_PAIR
A
DA
6
A
N6
DA
6
1_555
B
DG
11
B
N3
DG
3
1_555
hydrog
TYPE_11_PAIR
A
DA
6
A
N7
DA
6
1_555
B
DG
11
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
B
C38
10
B
N3
C38
2
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
B
C38
10
B
O2
C38
2
1_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
B
C38
10
B
N4
C38
2
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
9
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
9
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
9
B
N2
DG
1
1_555
DNA
octaplex, quadruplex, G-duet, base-intercalated duplex, base-intercalated motif, sheared G:A pair, DNA, deoxyribonucleic acid, X-ray analysis
1V3O
PDB
1
1V3O
1
8
1V3O
1
8
1V3O
A
1
1
8
9
16
1V3O
9
16
1V3O
B
1
1
8
BINDING SITE FOR RESIDUE K A 104
A
K
104
Software
6
A
DG
5
A
DG
5
6
3_555
A
DG
5
A
DG
5
6
1_555
A
HOH
25
D
HOH
6
3_555
A
HOH
25
D
HOH
6
1_555
B
DG
13
B
DG
5
6
1_555
B
DG
13
B
DG
5
6
3_555
23
I 2 2 2