50.95 0.584 9.198 19.652 A O5' DG 1 ATOM A O5' DG 1 1 1.00 1 O 47.70 -0.152 9.154 18.429 A C5' DG 1 ATOM A C5' DG 1 1 1.00 1 C 42.38 -0.713 10.523 18.132 A C4' DG 1 ATOM A C4' DG 1 1 1.00 1 C 34.41 0.378 11.459 18.003 A O4' DG 1 ATOM A O4' DG 1 1 1.00 1 O 40.88 -1.486 10.632 16.825 A C3' DG 1 ATOM A C3' DG 1 1 1.00 1 C 50.01 -2.413 11.718 16.917 A O3' DG 1 ATOM A O3' DG 1 1 1.00 1 O 42.25 -0.392 10.948 15.825 A C2' DG 1 ATOM A C2' DG 1 1 1.00 1 C 43.45 0.563 11.816 16.638 A C1' DG 1 ATOM A C1' DG 1 1 1.00 1 C 41.58 1.971 11.619 16.326 A N9 DG 1 ATOM A N9 DG 1 1 1.00 1 N 46.30 2.637 10.419 16.240 A C8 DG 1 ATOM A C8 DG 1 1 1.00 1 C 45.12 3.906 10.555 15.974 A N7 DG 1 ATOM A N7 DG 1 1 1.00 1 N 42.61 4.092 11.930 15.873 A C5 DG 1 ATOM A C5 DG 1 1 1.00 1 C 36.11 5.265 12.681 15.603 A C6 DG 1 ATOM A C6 DG 1 1 1.00 1 C 37.24 6.415 12.269 15.402 A O6 DG 1 ATOM A O6 DG 1 1 1.00 1 O 30.05 5.002 14.047 15.581 A N1 DG 1 ATOM A N1 DG 1 1 1.00 1 N 27.69 3.772 14.618 15.795 A C2 DG 1 ATOM A C2 DG 1 1 1.00 1 C 34.31 3.719 15.952 15.728 A N2 DG 1 ATOM A N2 DG 1 1 1.00 1 N 38.17 2.674 13.931 16.054 A N3 DG 1 ATOM A N3 DG 1 1 1.00 1 N 36.78 2.905 12.597 16.077 A C4 DG 1 ATOM A C4 DG 1 1 1.00 1 C 51.20 -3.669 11.782 15.918 A P C38 2 HETATM A P C38 1 2 1.00 1 P 54.32 -4.000 10.380 15.555 A O1P C38 2 HETATM A O1P C38 1 2 1.00 1 O 54.65 -4.711 12.648 16.528 A O2P C38 2 HETATM A O2P C38 1 2 1.00 1 O 48.76 -3.100 12.537 14.640 A O5' C38 2 HETATM A O5' C38 1 2 1.00 1 O 47.26 -2.893 13.939 14.683 A C5' C38 2 HETATM A C5' C38 1 2 1.00 1 C 43.33 -1.950 14.366 13.585 A C4' C38 2 HETATM A C4' C38 1 2 1.00 1 C 44.46 -0.649 13.780 13.754 A O4' C38 2 HETATM A O4' C38 1 2 1.00 1 O 52.33 -2.368 14.032 12.152 A C3' C38 2 HETATM A C3' C38 1 2 1.00 1 C 57.24 -2.795 15.246 11.524 A O3' C38 2 HETATM A O3' C38 1 2 1.00 1 O 45.48 -1.097 13.482 11.507 A C2' C38 2 HETATM A C2' C38 1 2 1.00 1 C 40.34 -0.019 13.865 12.501 A C1' C38 2 HETATM A C1' C38 1 2 1.00 1 C 35.73 1.199 13.040 12.545 A N1 C38 2 HETATM A N1 C38 1 2 1.00 1 N 31.88 2.430 13.701 12.515 A C2 C38 2 HETATM A C2 C38 1 2 1.00 1 C 33.15 2.438 14.941 12.446 A O2 C38 2 HETATM A O2 C38 1 2 1.00 1 O 29.50 3.573 12.983 12.566 A N3 C38 2 HETATM A N3 C38 1 2 1.00 1 N 38.44 3.518 11.652 12.649 A C4 C38 2 HETATM A C4 C38 1 2 1.00 1 C 30.90 4.670 10.981 12.696 A N4 C38 2 HETATM A N4 C38 1 2 1.00 1 N 23.32 2.275 10.950 12.684 A C5 C38 2 HETATM A C5 C38 1 2 1.00 1 C 34.73 1.149 11.673 12.624 A C6 C38 2 HETATM A C6 C38 1 2 1.00 1 C 52.11 2.216 8.798 12.882 A I C38 2 HETATM A I C38 1 2 1.00 1 I 47.37 -3.363 15.220 10.024 A P DG 3 ATOM A P DG 1 3 1.00 1 P 61.28 -4.415 16.265 9.925 A OP1 DG 3 ATOM A OP1 DG 1 3 1.00 1 O 54.24 -3.691 13.812 9.676 A OP2 DG 3 ATOM A OP2 DG 1 3 1.00 1 O 55.47 -2.108 15.679 9.157 A O5' DG 3 ATOM A O5' DG 1 3 1.00 1 O 55.03 -1.220 16.676 9.654 A C5' DG 3 ATOM A C5' DG 1 3 1.00 1 C 44.85 0.091 16.630 8.907 A C4' DG 3 ATOM A C4' DG 1 3 1.00 1 C 41.76 0.725 15.349 9.130 A O4' DG 3 ATOM A O4' DG 1 3 1.00 1 O 40.73 -0.024 16.768 7.391 A C3' DG 3 ATOM A C3' DG 1 3 1.00 1 C 43.52 1.174 17.380 6.900 A O3' DG 3 ATOM A O3' DG 1 3 1.00 1 O 44.28 -0.095 15.322 6.937 A C2' DG 3 ATOM A C2' DG 1 3 1.00 1 C 44.62 0.900 14.681 7.887 A C1' DG 3 ATOM A C1' DG 1 3 1.00 1 C 41.28 0.726 13.257 8.128 A N9 DG 3 ATOM A N9 DG 1 3 1.00 1 N 38.50 -0.429 12.512 8.029 A C8 DG 3 ATOM A C8 DG 1 3 1.00 1 C 39.95 -0.263 11.264 8.366 A N7 DG 3 ATOM A N7 DG 1 3 1.00 1 N 35.85 1.082 11.177 8.705 A C5 DG 3 ATOM A C5 DG 1 3 1.00 1 C 32.99 1.839 10.082 9.173 A C6 DG 3 ATOM A C6 DG 1 3 1.00 1 C 34.22 1.460 8.934 9.430 A O6 DG 3 ATOM A O6 DG 1 3 1.00 1 O 44.42 3.172 10.430 9.363 A N1 DG 3 ATOM A N1 DG 1 3 1.00 1 N 28.26 3.704 11.678 9.152 A C2 DG 3 ATOM A C2 DG 1 3 1.00 1 C 30.98 5.023 11.816 9.379 A N2 DG 3 ATOM A N2 DG 1 3 1.00 1 N 36.35 2.999 12.713 8.745 A N3 DG 3 ATOM A N3 DG 1 3 1.00 1 N 39.62 1.703 12.393 8.540 A C4 DG 3 ATOM A C4 DG 1 3 1.00 1 C 45.51 1.366 17.628 5.321 A P DA 4 ATOM A P DA 1 4 1.00 1 P 51.71 1.712 19.063 5.153 A OP1 DA 4 ATOM A OP1 DA 1 4 1.00 1 O 44.51 0.200 17.069 4.596 A OP2 DA 4 ATOM A OP2 DA 1 4 1.00 1 O 41.48 2.660 16.771 4.961 A O5' DA 4 ATOM A O5' DA 1 4 1.00 1 O 40.91 3.926 17.105 5.522 A C5' DA 4 ATOM A C5' DA 1 4 1.00 1 C 38.44 4.833 15.896 5.539 A C4' DA 4 ATOM A C4' DA 1 4 1.00 1 C 36.25 4.274 14.849 6.365 A O4' DA 4 ATOM A O4' DA 1 4 1.00 1 O 32.45 5.087 15.243 4.184 A C3' DA 4 ATOM A C3' DA 1 4 1.00 1 C 34.60 6.206 15.864 3.551 A O3' DA 4 ATOM A O3' DA 1 4 1.00 1 O 30.17 5.429 13.817 4.571 A C2' DA 4 ATOM A C2' DA 1 4 1.00 1 C 35.39 4.509 13.575 5.764 A C1' DA 4 ATOM A C1' DA 1 4 1.00 1 C 32.38 3.211 13.018 5.390 A N9 DA 4 ATOM A N9 DA 1 4 1.00 1 N 31.98 2.155 13.681 4.822 A C8 DA 4 ATOM A C8 DA 1 4 1.00 1 C 37.62 1.105 12.926 4.620 A N7 DA 4 ATOM A N7 DA 1 4 1.00 1 N 28.72 1.498 11.678 5.079 A C5 DA 4 ATOM A C5 DA 1 4 1.00 1 C 41.30 0.832 10.444 5.145 A C6 DA 4 ATOM A C6 DA 1 4 1.00 1 C 41.01 -0.422 10.263 4.736 A N6 DA 4 ATOM A N6 DA 1 4 1.00 1 N 38.95 1.508 9.391 5.652 A N1 DA 4 ATOM A N1 DA 1 4 1.00 1 N 34.60 2.769 9.583 6.066 A C2 DA 4 ATOM A C2 DA 1 4 1.00 1 C 30.92 3.499 10.696 6.060 A N3 DA 4 ATOM A N3 DA 1 4 1.00 1 N 29.14 2.796 11.719 5.549 A C4 DA 4 ATOM A C4 DA 1 4 1.00 1 C 39.37 6.059 16.435 2.059 A P DG 5 ATOM A P DG 1 5 1.00 1 P 41.09 7.253 17.273 1.771 A OP1 DG 5 ATOM A OP1 DG 1 5 1.00 1 O 37.12 4.701 17.020 1.923 A OP2 DG 5 ATOM A OP2 DG 1 5 1.00 1 O 41.98 6.111 15.134 1.145 A O5' DG 5 ATOM A O5' DG 1 5 1.00 1 O 41.96 6.099 15.242 -0.278 A C5' DG 5 ATOM A C5' DG 1 5 1.00 1 C 34.99 6.525 13.935 -0.901 A C4' DG 5 ATOM A C4' DG 1 5 1.00 1 C 31.84 5.579 12.885 -0.582 A O4' DG 5 ATOM A O4' DG 1 5 1.00 1 O 30.13 6.639 13.937 -2.429 A C3' DG 5 ATOM A C3' DG 1 5 1.00 1 C 38.87 7.787 13.168 -2.779 A O3' DG 5 ATOM A O3' DG 1 5 1.00 1 O 37.46 5.414 13.157 -2.864 A C2' DG 5 ATOM A C2' DG 1 5 1.00 1 C 30.99 5.382 12.133 -1.760 A C1' DG 5 ATOM A C1' DG 1 5 1.00 1 C 38.39 4.144 11.377 -1.623 A N9 DG 5 ATOM A N9 DG 1 5 1.00 1 N 25.58 2.862 11.791 -1.893 A C8 DG 5 ATOM A C8 DG 1 5 1.00 1 C 35.02 1.972 10.864 -1.668 A N7 DG 5 ATOM A N7 DG 1 5 1.00 1 N 27.74 2.713 9.778 -1.222 A C5 DG 5 ATOM A C5 DG 1 5 1.00 1 C 26.94 2.296 8.481 -0.817 A C6 DG 5 ATOM A C6 DG 1 5 1.00 1 C 28.70 1.153 8.024 -0.775 A O6 DG 5 ATOM A O6 DG 1 5 1.00 1 O 26.42 3.377 7.692 -0.436 A N1 DG 5 ATOM A N1 DG 1 5 1.00 1 N 29.16 4.694 8.102 -0.439 A C2 DG 5 ATOM A C2 DG 1 5 1.00 1 C 28.76 5.606 7.214 -0.027 A N2 DG 5 ATOM A N2 DG 1 5 1.00 1 N 30.24 5.089 9.304 -0.817 A N3 DG 5 ATOM A N3 DG 1 5 1.00 1 N 24.85 4.053 10.082 -1.191 A C4 DG 5 ATOM A C4 DG 1 5 1.00 1 C 42.20 8.808 13.714 -3.883 A P DA 6 ATOM A P DA 1 6 1.00 1 P 53.27 8.850 15.191 -3.804 A OP1 DA 6 ATOM A OP1 DA 1 6 1.00 1 O 51.14 8.448 13.057 -5.161 A OP2 DA 6 ATOM A OP2 DA 1 6 1.00 1 O 46.84 10.199 13.126 -3.399 A O5' DA 6 ATOM A O5' DA 1 6 1.00 1 O 40.44 10.421 11.729 -3.425 A C5' DA 6 ATOM A C5' DA 1 6 1.00 1 C 36.99 11.900 11.442 -3.400 A C4' DA 6 ATOM A C4' DA 1 6 1.00 1 C 32.88 12.054 10.081 -3.851 A O4' DA 6 ATOM A O4' DA 1 6 1.00 1 O 36.88 12.696 12.255 -4.414 A C3' DA 6 ATOM A C3' DA 1 6 1.00 1 C 40.52 14.090 12.140 -4.116 A O3' DA 6 ATOM A O3' DA 1 6 1.00 1 O 30.18 12.381 11.535 -5.709 A C2' DA 6 ATOM A C2' DA 1 6 1.00 1 C 38.89 12.318 10.077 -5.254 A C1' DA 6 ATOM A C1' DA 1 6 1.00 1 C 30.03 11.273 9.286 -5.894 A N9 DA 6 ATOM A N9 DA 1 6 1.00 1 N 25.69 10.055 9.683 -6.391 A C8 DA 6 ATOM A C8 DA 1 6 1.00 1 C 35.78 9.347 8.701 -6.893 A N7 DA 6 ATOM A N7 DA 1 6 1.00 1 N 23.71 10.153 7.585 -6.716 A C5 DA 6 ATOM A C5 DA 1 6 1.00 1 C 30.56 9.977 6.231 -7.033 A C6 DA 6 ATOM A C6 DA 1 6 1.00 1 C 32.35 8.885 5.737 -7.619 A N6 DA 6 ATOM A N6 DA 1 6 1.00 1 N 27.12 10.978 5.384 -6.722 A N1 DA 6 ATOM A N1 DA 1 6 1.00 1 N 31.94 12.075 5.871 -6.128 A C2 DA 6 ATOM A C2 DA 1 6 1.00 1 C 27.34 12.356 7.119 -5.777 A N3 DA 6 ATOM A N3 DA 1 6 1.00 1 N 35.70 11.342 7.935 -6.105 A C4 DA 6 ATOM A C4 DA 1 6 1.00 1 C 39.90 15.168 12.929 -5.010 A P DG 7 ATOM A P DG 1 7 1.00 1 P 43.31 16.359 13.185 -4.157 A OP1 DG 7 ATOM A OP1 DG 1 7 1.00 1 O 37.40 14.468 14.067 -5.660 A OP2 DG 7 ATOM A OP2 DG 1 7 1.00 1 O 36.48 15.563 11.868 -6.128 A O5' DG 7 ATOM A O5' DG 1 7 1.00 1 O 39.93 15.981 10.556 -5.766 A C5' DG 7 ATOM A C5' DG 1 7 1.00 1 C 42.04 15.973 9.650 -6.975 A C4' DG 7 ATOM A C4' DG 1 7 1.00 1 C 42.93 14.622 9.342 -7.385 A O4' DG 7 ATOM A O4' DG 1 7 1.00 1 O 47.88 16.682 10.195 -8.218 A C3' DG 7 ATOM A C3' DG 1 7 1.00 1 C 51.00 17.519 9.176 -8.768 A O3' DG 7 ATOM A O3' DG 1 7 1.00 1 O 42.13 15.543 10.502 -9.176 A C2' DG 7 ATOM A C2' DG 1 7 1.00 1 C 40.00 14.548 9.426 -8.798 A C1' DG 7 ATOM A C1' DG 1 7 1.00 1 C 36.13 13.157 9.691 -9.156 A N9 DG 7 ATOM A N9 DG 1 7 1.00 1 N 28.26 12.520 10.908 -9.214 A C8 DG 7 ATOM A C8 DG 1 7 1.00 1 C 26.73 11.258 10.808 -9.538 A N7 DG 7 ATOM A N7 DG 1 7 1.00 1 N 35.25 11.055 9.445 -9.715 A C5 DG 7 ATOM A C5 DG 1 7 1.00 1 C 29.54 9.882 8.721 -10.072 A C6 DG 7 ATOM A C6 DG 1 7 1.00 1 C 32.55 8.754 9.153 -10.320 A O6 DG 7 ATOM A O6 DG 1 7 1.00 1 O 29.34 10.122 7.355 -10.131 A N1 DG 7 ATOM A N1 DG 1 7 1.00 1 N 32.34 11.329 6.754 -9.885 A C2 DG 7 ATOM A C2 DG 1 7 1.00 1 C 35.44 11.359 5.419 -9.993 A N2 DG 7 ATOM A N2 DG 1 7 1.00 1 N 39.42 12.428 7.412 -9.556 A N3 DG 7 ATOM A N3 DG 1 7 1.00 1 N 34.58 12.219 8.742 -9.489 A C4 DG 7 ATOM A C4 DG 1 7 1.00 1 C 46.29 18.721 9.576 -9.753 A P DC 8 ATOM A P DC 1 8 1.00 1 P 56.44 19.976 9.382 -9.027 A OP1 DC 8 ATOM A OP1 DC 1 8 1.00 1 O 43.48 18.424 10.905 -10.330 A OP2 DC 8 ATOM A OP2 DC 1 8 1.00 1 O 45.72 18.658 8.465 -10.890 A O5' DC 8 ATOM A O5' DC 1 8 1.00 1 O 37.53 18.798 7.086 -10.561 A C5' DC 8 ATOM A C5' DC 1 8 1.00 1 C 39.63 17.850 6.249 -11.388 A C4' DC 8 ATOM A C4' DC 1 8 1.00 1 C 42.08 16.477 6.582 -11.118 A O4' DC 8 ATOM A O4' DC 1 8 1.00 1 O 45.94 17.968 6.391 -12.900 A C3' DC 8 ATOM A C3' DC 1 8 1.00 1 C 55.54 19.079 5.668 -13.429 A O3' DC 8 ATOM A O3' DC 1 8 1.00 1 O 45.34 16.622 5.883 -13.392 A C2' DC 8 ATOM A C2' DC 1 8 1.00 1 C 43.91 15.695 6.038 -12.179 A C1' DC 8 ATOM A C1' DC 1 8 1.00 1 C 36.51 14.555 6.936 -12.420 A N1 DC 8 ATOM A N1 DC 1 8 1.00 1 N 38.11 13.316 6.374 -12.716 A C2 DC 8 ATOM A C2 DC 1 8 1.00 1 C 40.60 13.219 5.140 -12.757 A O2 DC 8 ATOM A O2 DC 1 8 1.00 1 O 34.19 12.258 7.184 -12.949 A N3 DC 8 ATOM A N3 DC 1 8 1.00 1 N 36.51 12.408 8.508 -12.893 A C4 DC 8 ATOM A C4 DC 1 8 1.00 1 C 34.78 11.339 9.268 -13.134 A N4 DC 8 ATOM A N4 DC 1 8 1.00 1 N 37.34 13.663 9.111 -12.587 A C5 DC 8 ATOM A C5 DC 1 8 1.00 1 C 33.11 14.701 8.294 -12.360 A C6 DC 8 ATOM A C6 DC 1 8 1.00 1 C 49.43 2.803 4.128 -16.239 B O5' DG 9 ATOM B O5' DG 1 1 1.00 1 O 36.40 3.702 3.194 -16.829 B C5' DG 9 ATOM B C5' DG 1 1 1.00 1 C 38.10 4.351 2.296 -15.803 B C4' DG 9 ATOM B C4' DG 1 1 1.00 1 C 34.65 5.627 2.826 -15.377 B O4' DG 9 ATOM B O4' DG 1 1 1.00 1 O 32.22 3.549 2.056 -14.527 B C3' DG 9 ATOM B C3' DG 1 1 1.00 1 C 36.15 3.785 0.720 -14.071 B O3' DG 9 ATOM B O3' DG 1 1 1.00 1 O 32.15 4.114 3.088 -13.565 B C2' DG 9 ATOM B C2' DG 1 1 1.00 1 C 37.95 5.566 3.244 -14.018 B C1' DG 9 ATOM B C1' DG 1 1 1.00 1 C 33.00 6.080 4.611 -13.961 B N9 DG 9 ATOM B N9 DG 1 1 1.00 1 N 39.23 5.378 5.771 -14.169 B C8 DG 9 ATOM B C8 DG 1 1 1.00 1 C 37.65 6.123 6.842 -14.093 B N7 DG 9 ATOM B N7 DG 1 1 1.00 1 N 36.09 7.388 6.359 -13.803 B C5 DG 9 ATOM B C5 DG 1 1 1.00 1 C 32.56 8.611 7.050 -13.603 B C6 DG 9 ATOM B C6 DG 1 1 1.00 1 C 32.92 8.821 8.259 -13.645 B O6 DG 9 ATOM B O6 DG 1 1 1.00 1 O 34.76 9.656 6.176 -13.333 B N1 DG 9 ATOM B N1 DG 1 1 1.00 1 N 35.81 9.539 4.806 -13.265 B C2 DG 9 ATOM B C2 DG 1 1 1.00 1 C 35.58 10.668 4.121 -13.001 B N2 DG 9 ATOM B N2 DG 1 1 1.00 1 N 32.75 8.402 4.151 -13.446 B N3 DG 9 ATOM B N3 DG 1 1 1.00 1 N 26.31 7.379 4.983 -13.710 B C4 DG 9 ATOM B C4 DG 1 1 1.00 1 C 41.87 3.084 0.189 -12.723 B P C38 10 HETATM B P C38 1 2 1.00 1 P 37.75 2.012 1.144 -12.339 B O1P C38 10 HETATM B O1P C38 1 2 1.00 1 O 40.62 2.756 -1.248 -12.918 B O2P C38 10 HETATM B O2P C38 1 2 1.00 1 O 43.03 4.261 0.280 -11.659 B O5' C38 10 HETATM B O5' C38 1 2 1.00 1 O 32.25 5.500 -0.370 -11.911 B C5' C38 10 HETATM B C5' C38 1 2 1.00 1 C 33.42 6.534 0.078 -10.909 B C4' C38 10 HETATM B C4' C38 1 2 1.00 1 C 37.82 6.878 1.465 -11.136 B O4' C38 10 HETATM B O4' C38 1 2 1.00 1 O 36.99 6.116 -0.019 -9.439 B C3' C38 10 HETATM B C3' C38 1 2 1.00 1 C 41.28 7.208 -0.574 -8.699 B O3' C38 10 HETATM B O3' C38 1 2 1.00 1 O 33.63 5.876 1.430 -9.044 B C2' C38 10 HETATM B C2' C38 1 2 1.00 1 C 40.99 6.926 2.123 -9.885 B C1' C38 10 HETATM B C1' C38 1 2 1.00 1 C 33.05 6.739 3.559 -10.128 B N1 C38 10 HETATM B N1 C38 1 2 1.00 1 N 34.28 7.873 4.374 -10.200 B C2 C38 10 HETATM B C2 C38 1 2 1.00 1 C 31.43 8.984 3.855 -10.045 B O2 C38 10 HETATM B O2 C38 1 2 1.00 1 O 33.25 7.728 5.699 -10.438 B N3 C38 10 HETATM B N3 C38 1 2 1.00 1 N 30.35 6.511 6.211 -10.601 B C4 C38 10 HETATM B C4 C38 1 2 1.00 1 C 27.42 6.412 7.525 -10.797 B N4 C38 10 HETATM B N4 C38 1 2 1.00 1 N 33.40 5.342 5.396 -10.552 B C5 C38 10 HETATM B C5 C38 1 2 1.00 1 C 32.39 5.497 4.093 -10.296 B C6 C38 10 HETATM B C6 C38 1 2 1.00 1 C 39.38 3.414 6.188 -11.087 B I C38 10 HETATM B I C38 1 2 1.00 1 I 42.58 7.017 -0.959 -7.154 B P DG 11 ATOM B P DG 1 3 1.00 1 P 49.41 8.045 -1.967 -6.812 B OP1 DG 11 ATOM B OP1 DG 1 3 1.00 1 O 38.23 5.586 -1.257 -6.923 B OP2 DG 11 ATOM B OP2 DG 1 3 1.00 1 O 44.17 7.379 0.382 -6.380 B O5' DG 11 ATOM B O5' DG 1 3 1.00 1 O 37.02 8.649 0.999 -6.565 B C5' DG 11 ATOM B C5' DG 1 3 1.00 1 C 34.15 8.645 2.390 -5.979 B C4' DG 11 ATOM B C4' DG 1 3 1.00 1 C 41.34 7.653 3.213 -6.643 B O4' DG 11 ATOM B O4' DG 1 3 1.00 1 O 29.18 8.319 2.470 -4.485 B C3' DG 11 ATOM B C3' DG 1 3 1.00 1 C 33.80 9.130 3.490 -3.915 B O3' DG 11 ATOM B O3' DG 1 3 1.00 1 O 29.26 6.881 2.947 -4.479 B C2' DG 11 ATOM B C2' DG 1 3 1.00 1 C 35.07 6.936 3.907 -5.644 B C1' DG 11 ATOM B C1' DG 1 3 1.00 1 C 30.89 5.644 4.300 -6.184 B N9 DG 11 ATOM B N9 DG 1 3 1.00 1 N 31.63 4.505 3.537 -6.264 B C8 DG 11 ATOM B C8 DG 1 3 1.00 1 C 30.40 3.480 4.195 -6.727 B N7 DG 11 ATOM B N7 DG 1 3 1.00 1 N 33.17 3.977 5.463 -6.982 B C5 DG 11 ATOM B C5 DG 1 3 1.00 1 C 28.43 3.327 6.610 -7.475 B C6 DG 11 ATOM B C6 DG 1 3 1.00 1 C 31.16 2.141 6.750 -7.763 B O6 DG 11 ATOM B O6 DG 1 3 1.00 1 O 26.05 4.203 7.678 -7.608 B N1 DG 11 ATOM B N1 DG 1 3 1.00 1 N 28.81 5.540 7.651 -7.283 B C2 DG 11 ATOM B C2 DG 1 3 1.00 1 C 26.27 6.222 8.792 -7.488 B N2 DG 11 ATOM B N2 DG 1 3 1.00 1 N 27.00 6.158 6.587 -6.796 B N3 DG 11 ATOM B N3 DG 1 3 1.00 1 N 28.98 5.319 5.534 -6.675 B C4 DG 11 ATOM B C4 DG 1 3 1.00 1 C 35.47 9.276 3.603 -2.327 B P DA 12 ATOM B P DA 1 4 1.00 1 P 38.46 10.574 2.991 -1.959 B OP1 DA 12 ATOM B OP1 DA 1 4 1.00 1 O 38.48 8.027 3.114 -1.708 B OP2 DA 12 ATOM B OP2 DA 1 4 1.00 1 O 38.17 9.396 5.174 -2.106 B O5' DA 12 ATOM B O5' DA 1 4 1.00 1 O 33.36 10.309 5.944 -2.897 B C5' DA 12 ATOM B C5' DA 1 4 1.00 1 C 27.53 9.738 7.313 -3.181 B C4' DA 12 ATOM B C4' DA 1 4 1.00 1 C 27.48 8.679 7.274 -4.162 B O4' DA 12 ATOM B O4' DA 1 4 1.00 1 O 34.47 9.104 7.951 -1.959 B C3' DA 12 ATOM B C3' DA 1 4 1.00 1 C 33.99 10.119 8.534 -1.147 B O3' DA 12 ATOM B O3' DA 1 4 1.00 1 O 29.80 8.165 8.967 -2.579 B C2' DA 12 ATOM B C2' DA 1 4 1.00 1 C 29.84 7.685 8.241 -3.835 B C1' DA 12 ATOM B C1' DA 1 4 1.00 1 C 30.12 6.414 7.532 -3.683 B N9 DA 12 ATOM B N9 DA 1 4 1.00 1 N 23.38 6.219 6.264 -3.205 B C8 DA 12 ATOM B C8 DA 1 4 1.00 1 C 27.98 4.966 5.881 -3.211 B N7 DA 12 ATOM B N7 DA 1 4 1.00 1 N 26.73 4.286 6.977 -3.717 B C5 DA 12 ATOM B C5 DA 1 4 1.00 1 C 27.29 2.924 7.208 -3.967 B C6 DA 12 ATOM B C6 DA 1 4 1.00 1 C 31.02 1.961 6.316 -3.730 B N6 DA 12 ATOM B N6 DA 1 4 1.00 1 N 33.38 2.577 8.405 -4.476 B N1 DA 12 ATOM B N1 DA 1 4 1.00 1 N 30.96 3.544 9.305 -4.715 B C2 DA 12 ATOM B C2 DA 1 4 1.00 1 C 36.49 4.860 9.207 -4.516 B N3 DA 12 ATOM B N3 DA 1 4 1.00 1 N 26.42 5.167 8.003 -4.010 B C4 DA 12 ATOM B C4 DA 1 4 1.00 1 C 33.97 9.861 8.715 0.422 B P DG 13 ATOM B P DG 1 5 1.00 1 P 37.27 11.117 9.163 1.071 B OP1 DG 13 ATOM B OP1 DG 1 5 1.00 1 O 38.20 9.194 7.484 0.894 B OP2 DG 13 ATOM B OP2 DG 1 5 1.00 1 O 42.30 8.828 9.917 0.459 B O5' DG 13 ATOM B O5' DG 1 5 1.00 1 O 34.71 7.515 9.739 0.926 B C5' DG 13 ATOM B C5' DG 1 5 1.00 1 C 34.85 7.228 10.767 1.991 B C4' DG 13 ATOM B C4' DG 1 5 1.00 1 C 31.60 5.847 10.657 2.379 B O4' DG 13 ATOM B O4' DG 1 5 1.00 1 O 28.06 8.027 10.552 3.274 B C3' DG 13 ATOM B C3' DG 1 5 1.00 1 C 40.73 8.156 11.783 3.994 B O3' DG 13 ATOM B O3' DG 1 5 1.00 1 O 36.13 7.159 9.570 4.037 B C2' DG 13 ATOM B C2' DG 1 5 1.00 1 C 33.37 5.743 9.967 3.619 B C1' DG 13 ATOM B C1' DG 1 5 1.00 1 C 31.32 4.818 8.858 3.429 B N9 DG 13 ATOM B N9 DG 1 5 1.00 1 N 37.68 5.029 7.530 3.724 B C8 DG 13 ATOM B C8 DG 1 5 1.00 1 C 38.40 3.988 6.783 3.489 B N7 DG 13 ATOM B N7 DG 1 5 1.00 1 N 39.49 3.032 7.666 3.001 B C5 DG 13 ATOM B C5 DG 1 5 1.00 1 C 32.96 1.691 7.441 2.600 B C6 DG 13 ATOM B C6 DG 1 5 1.00 1 C 35.56 1.050 6.389 2.611 B O6 DG 13 ATOM B O6 DG 1 5 1.00 1 O 34.76 1.087 8.613 2.161 B N1 DG 13 ATOM B N1 DG 1 5 1.00 1 N 30.93 1.690 9.844 2.119 B C2 DG 13 ATOM B C2 DG 1 5 1.00 1 C 28.46 0.950 10.851 1.644 B N2 DG 13 ATOM B N2 DG 1 5 1.00 1 N 35.49 2.931 10.069 2.509 B N3 DG 13 ATOM B N3 DG 1 5 1.00 1 N 29.49 3.540 8.941 2.938 B C4 DG 13 ATOM B C4 DG 1 5 1.00 1 C 40.54 9.297 11.938 5.119 B P DA 14 ATOM B P DA 1 6 1.00 1 P 49.51 10.448 11.061 4.800 B OP1 DA 14 ATOM B OP1 DA 1 6 1.00 1 O 44.19 8.616 11.800 6.430 B OP2 DA 14 ATOM B OP2 DA 1 6 1.00 1 O 39.69 9.762 13.449 4.963 B O5' DA 14 ATOM B O5' DA 1 6 1.00 1 O 38.24 8.847 14.502 5.207 B C5' DA 14 ATOM B C5' DA 1 6 1.00 1 C 31.33 9.565 15.830 5.233 B C4' DA 14 ATOM B C4' DA 1 6 1.00 1 C 33.38 8.664 16.746 5.884 B O4' DA 14 ATOM B O4' DA 1 6 1.00 1 O 33.86 10.800 15.868 6.124 B C3' DA 14 ATOM B C3' DA 1 6 1.00 1 C 37.55 11.529 17.077 5.865 B O3' DA 14 ATOM B O3' DA 1 6 1.00 1 O 32.12 10.185 15.900 7.511 B C2' DA 14 ATOM B C2' DA 1 6 1.00 1 C 32.80 8.884 16.678 7.296 B C1' DA 14 ATOM B C1' DA 1 6 1.00 1 C 41.38 7.704 16.064 7.902 B N9 DA 14 ATOM B N9 DA 1 6 1.00 1 N 29.81 7.452 14.730 8.118 B C8 DA 14 ATOM B C8 DA 1 6 1.00 1 C 30.66 6.282 14.494 8.661 B N7 DA 14 ATOM B N7 DA 1 6 1.00 1 N 40.04 5.729 15.757 8.820 B C5 DA 14 ATOM B C5 DA 1 6 1.00 1 C 32.27 4.498 16.190 9.336 B C6 DA 14 ATOM B C6 DA 1 6 1.00 1 C 40.50 3.562 15.365 9.811 B N6 DA 14 ATOM B N6 DA 1 6 1.00 1 N 42.45 4.256 17.518 9.350 B N1 DA 14 ATOM B N1 DA 1 6 1.00 1 N 31.26 5.196 18.347 8.875 B C2 DA 14 ATOM B C2 DA 1 6 1.00 1 C 38.05 6.389 18.061 8.362 B N3 DA 14 ATOM B N3 DA 1 6 1.00 1 N 37.56 6.597 16.732 8.363 B C4 DA 14 ATOM B C4 DA 1 6 1.00 1 C 40.80 12.839 17.438 6.732 B P DG 15 ATOM B P DG 1 7 1.00 1 P 47.24 13.523 18.566 6.054 B OP1 DG 15 ATOM B OP1 DG 1 7 1.00 1 O 37.13 13.586 16.191 7.003 B OP2 DG 15 ATOM B OP2 DG 1 7 1.00 1 O 34.30 12.253 17.984 8.107 B O5' DG 15 ATOM B O5' DG 1 7 1.00 1 O 39.89 11.430 19.148 8.129 B C5' DG 15 ATOM B C5' DG 1 7 1.00 1 C 43.49 10.709 19.258 9.453 B C4' DG 15 ATOM B C4' DG 1 7 1.00 1 C 44.19 9.855 18.115 9.635 B O4' DG 15 ATOM B O4' DG 1 7 1.00 1 O 45.81 11.609 19.304 10.688 B C3' DG 15 ATOM B C3' DG 1 7 1.00 1 C 43.26 11.653 20.647 11.176 B O3' DG 15 ATOM B O3' DG 1 7 1.00 1 O 40.05 10.952 18.362 11.693 B C2' DG 15 ATOM B C2' DG 1 7 1.00 1 C 46.61 9.662 17.910 11.021 B C1' DG 15 ATOM B C1' DG 1 7 1.00 1 C 36.47 9.334 16.498 11.216 B N9 DG 15 ATOM B N9 DG 1 7 1.00 1 N 30.89 10.163 15.422 11.024 B C8 DG 15 ATOM B C8 DG 1 7 1.00 1 C 28.37 9.576 14.278 11.250 B N7 DG 15 ATOM B N7 DG 1 7 1.00 1 N 29.99 8.285 14.622 11.619 B C5 DG 15 ATOM B C5 DG 1 7 1.00 1 C 36.18 7.183 13.803 11.984 B C6 DG 15 ATOM B C6 DG 1 7 1.00 1 C 37.85 7.127 12.564 12.046 B O6 DG 15 ATOM B O6 DG 1 7 1.00 1 O 28.34 6.062 14.566 12.297 B N1 DG 15 ATOM B N1 DG 1 7 1.00 1 N 33.39 6.006 15.935 12.261 B C2 DG 15 ATOM B C2 DG 1 7 1.00 1 C 38.03 4.834 16.486 12.605 B N2 DG 15 ATOM B N2 DG 1 7 1.00 1 N 39.07 7.022 16.707 11.916 B N3 DG 15 ATOM B N3 DG 1 7 1.00 1 N 34.00 8.121 15.990 11.612 B C4 DG 15 ATOM B C4 DG 1 7 1.00 1 C 42.57 12.423 20.980 12.544 B P DC 16 ATOM B P DC 1 8 1.00 1 P 45.06 12.834 22.403 12.496 B OP1 DC 16 ATOM B OP1 DC 1 8 1.00 1 O 37.17 13.452 19.932 12.755 B OP2 DC 16 ATOM B OP2 DC 1 8 1.00 1 O 39.93 11.291 20.831 13.656 B O5' DC 16 ATOM B O5' DC 1 8 1.00 1 O 40.31 10.171 21.715 13.669 B C5' DC 16 ATOM B C5' DC 1 8 1.00 1 C 40.20 9.105 21.204 14.609 B C4' DC 16 ATOM B C4' DC 1 8 1.00 1 C 42.96 8.565 19.953 14.146 B O4' DC 16 ATOM B O4' DC 1 8 1.00 1 O 40.62 9.573 20.901 16.025 B C3' DC 16 ATOM B C3' DC 1 8 1.00 1 C 41.68 9.816 22.072 16.800 B O3' DC 16 ATOM B O3' DC 1 8 1.00 1 O 34.36 8.486 19.970 16.533 B C2' DC 16 ATOM B C2' DC 1 8 1.00 1 C 40.16 7.948 19.307 15.256 B C1' DC 16 ATOM B C1' DC 1 8 1.00 1 C 34.23 8.229 17.868 15.161 B N1 DC 16 ATOM B N1 DC 1 8 1.00 1 N 31.40 7.184 16.971 15.369 B C2 DC 16 ATOM B C2 DC 1 8 1.00 1 C 33.16 6.056 17.418 15.612 B O2 DC 16 ATOM B O2 DC 1 8 1.00 1 O 35.60 7.425 15.645 15.296 B N3 DC 16 ATOM B N3 DC 1 8 1.00 1 N 30.55 8.655 15.205 15.024 B C4 DC 16 ATOM B C4 DC 1 8 1.00 1 C 28.95 8.847 13.881 14.957 B N4 DC 16 ATOM B N4 DC 1 8 1.00 1 N 32.45 9.744 16.099 14.806 B C5 DC 16 ATOM B C5 DC 1 8 1.00 1 C 36.38 9.487 17.411 14.882 B C6 DC 16 ATOM B C6 DC 1 8 1.00 1 C 29.35 0.000 5.739 0.000 A K K 104 HETATM C K K 2 0.50 1 K 43.71 14.102 2.657 -13.061 A O HOH 17 HETATM D O HOH 3 1.00 1 O 35.37 -0.910 7.866 9.724 A O HOH 20 HETATM D O HOH 3 1.00 1 O 48.42 5.724 7.304 12.778 A O HOH 21 HETATM D O HOH 3 1.00 1 O 35.10 3.918 12.799 1.642 A O HOH 22 HETATM D O HOH 3 1.00 1 O 34.81 2.931 5.139 0.447 A O HOH 25 HETATM D O HOH 3 1.00 1 O 45.35 0.983 7.202 16.518 A O HOH 26 HETATM D O HOH 3 1.00 1 O 36.19 11.664 3.056 -7.411 A O HOH 30 HETATM D O HOH 3 1.00 1 O 43.67 -3.159 12.237 6.462 A O HOH 31 HETATM D O HOH 3 1.00 1 O 40.84 2.762 16.026 -1.601 A O HOH 32 HETATM D O HOH 3 1.00 1 O 42.64 5.459 8.398 9.898 A O HOH 33 HETATM D O HOH 3 1.00 1 O 49.96 -3.061 10.138 8.572 A O HOH 36 HETATM D O HOH 3 1.00 1 O 60.48 2.871 7.458 7.976 A O HOH 39 HETATM D O HOH 3 1.00 1 O 47.00 -1.869 9.960 12.381 A O HOH 41 HETATM D O HOH 3 1.00 1 O 41.76 5.499 8.532 15.825 A O HOH 42 HETATM D O HOH 3 1.00 1 O 40.01 14.874 5.009 -9.081 A O HOH 43 HETATM D O HOH 3 1.00 1 O 39.61 7.845 11.265 -9.288 A O HOH 46 HETATM D O HOH 3 1.00 1 O 55.24 14.364 8.363 -3.340 A O HOH 47 HETATM D O HOH 3 1.00 1 O 53.83 3.777 19.920 2.988 A O HOH 49 HETATM D O HOH 3 1.00 1 O 68.39 -0.878 7.372 13.090 A O HOH 51 HETATM D O HOH 3 1.00 1 O 53.82 -7.513 17.142 8.004 A O HOH 52 HETATM D O HOH 3 1.00 1 O 50.49 5.031 9.095 18.799 A O HOH 53 HETATM D O HOH 3 1.00 1 O 52.51 -5.569 8.419 17.268 A O HOH 54 HETATM D O HOH 3 1.00 1 O 58.79 14.287 13.774 -8.343 A O HOH 55 HETATM D O HOH 3 1.00 1 O 53.19 2.715 7.870 19.990 A O HOH 56 HETATM D O HOH 3 1.00 1 O 65.42 -4.121 14.486 18.561 A O HOH 58 HETATM D O HOH 3 1.00 1 O 61.59 -6.219 9.641 20.012 A O HOH 59 HETATM D O HOH 3 1.00 1 O 51.37 1.859 15.091 1.572 A O HOH 62 HETATM D O HOH 3 1.00 1 O 49.81 -7.696 14.461 10.146 A O HOH 63 HETATM D O HOH 3 1.00 1 O 62.17 5.784 21.295 5.025 A O HOH 66 HETATM D O HOH 3 1.00 1 O 58.08 8.907 10.833 16.656 A O HOH 67 HETATM D O HOH 3 1.00 1 O 51.58 6.968 8.272 21.210 A O HOH 68 HETATM D O HOH 3 1.00 1 O 45.50 2.962 23.994 4.131 A O HOH 69 HETATM D O HOH 3 1.00 1 O 52.65 13.941 5.834 -2.051 A O HOH 70 HETATM D O HOH 3 1.00 1 O 57.15 -2.802 8.435 20.492 A O HOH 71 HETATM D O HOH 3 1.00 1 O 58.96 9.438 9.960 19.471 A O HOH 72 HETATM D O HOH 3 1.00 1 O 49.94 4.052 5.178 17.294 A O HOH 74 HETATM D O HOH 3 1.00 1 O 43.91 5.983 10.364 7.034 A O HOH 76 HETATM D O HOH 3 1.00 1 O 50.98 9.618 16.439 1.352 A O HOH 78 HETATM D O HOH 3 1.00 1 O 52.70 11.710 11.848 18.127 A O HOH 79 HETATM D O HOH 3 1.00 1 O 36.29 12.702 11.264 20.744 A O HOH 80 HETATM D O HOH 3 1.00 1 O 51.08 -6.763 16.016 19.015 A O HOH 83 HETATM D O HOH 3 1.00 1 O 48.80 4.071 24.814 6.834 A O HOH 85 HETATM D O HOH 3 1.00 1 O 65.65 -10.116 16.779 5.748 A O HOH 87 HETATM D O HOH 3 1.00 1 O 55.84 -8.522 10.963 18.887 A O HOH 89 HETATM D O HOH 3 1.00 1 O 87.06 -2.252 8.608 25.524 A O HOH 91 HETATM D O HOH 3 1.00 1 O 74.82 -4.332 7.322 22.611 A O HOH 94 HETATM D O HOH 3 1.00 1 O 43.77 2.750 2.305 -10.164 B O HOH 18 HETATM E O HOH 3 1.00 1 O 33.88 6.443 11.158 -5.963 B O HOH 19 HETATM E O HOH 3 1.00 1 O 52.40 2.516 18.904 11.213 B O HOH 23 HETATM E O HOH 3 1.00 1 O 50.22 0.785 -1.139 -9.360 B O HOH 24 HETATM E O HOH 3 1.00 1 O 52.89 6.859 3.988 0.383 B O HOH 27 HETATM E O HOH 3 1.00 1 O 57.20 9.706 7.472 9.257 B O HOH 28 HETATM E O HOH 3 1.00 1 O 53.54 0.000 0.000 2.710 B O HOH 29 HETATM E O HOH 3 0.50 1 O 63.51 8.030 22.482 18.680 B O HOH 34 HETATM E O HOH 3 1.00 1 O 69.45 14.811 21.025 8.106 B O HOH 35 HETATM E O HOH 3 1.00 1 O 48.49 3.852 0.222 -5.448 B O HOH 37 HETATM E O HOH 3 1.00 1 O 61.99 5.615 22.447 16.983 B O HOH 38 HETATM E O HOH 3 1.00 1 O 43.84 7.422 19.959 20.028 B O HOH 40 HETATM E O HOH 3 1.00 1 O 45.49 7.903 18.869 4.351 B O HOH 44 HETATM E O HOH 3 1.00 1 O 60.67 7.895 6.218 2.783 B O HOH 45 HETATM E O HOH 3 1.00 1 O 49.72 3.804 3.790 -1.981 B O HOH 48 HETATM E O HOH 3 1.00 1 O 60.00 2.485 1.418 -0.377 B O HOH 50 HETATM E O HOH 3 1.00 1 O 43.65 10.744 11.872 8.410 B O HOH 57 HETATM E O HOH 3 1.00 1 O 72.36 15.880 17.045 11.512 B O HOH 60 HETATM E O HOH 3 1.00 1 O 59.42 12.033 19.257 3.730 B O HOH 61 HETATM E O HOH 3 1.00 1 O 57.89 10.507 -1.634 -8.965 B O HOH 64 HETATM E O HOH 3 1.00 1 O 48.24 5.701 20.080 22.325 B O HOH 65 HETATM E O HOH 3 1.00 1 O 55.06 4.769 22.303 8.787 B O HOH 73 HETATM E O HOH 3 1.00 1 O 73.27 11.790 4.367 0.085 B O HOH 75 HETATM E O HOH 3 1.00 1 O 71.43 12.539 10.405 3.409 B O HOH 77 HETATM E O HOH 3 1.00 1 O 50.10 14.062 22.542 4.389 B O HOH 81 HETATM E O HOH 3 1.00 1 O 59.62 16.062 9.490 4.144 B O HOH 82 HETATM E O HOH 3 1.00 1 O 66.45 3.242 23.534 10.947 B O HOH 84 HETATM E O HOH 3 1.00 1 O 63.40 8.505 3.046 4.060 B O HOH 86 HETATM E O HOH 3 1.00 1 O 61.92 3.255 5.357 5.478 B O HOH 88 HETATM E O HOH 3 1.00 1 O 59.01 7.408 21.437 9.650 B O HOH 90 HETATM E O HOH 3 1.00 1 O 57.82 15.717 6.732 5.155 B O HOH 92 HETATM E O HOH 3 1.00 1 O 55.15 8.250 0.994 2.294 B O HOH 93 HETATM E O HOH 3 1.00 1 O 58.40 11.029 8.698 5.636 B O HOH 95 HETATM E O HOH 3 1.00 1 O 50.98 6.513 -0.779 1.151 B O HOH 96 HETATM E O HOH 3 1.00 1 O 88.19 0.364 3.541 -2.249 B O HOH 97 HETATM E O HOH 3 1.00 1 O 90.54 0.481 3.894 -5.504 B O HOH 98 HETATM E O HOH 3 1.00 1 O 51.21 12.791 9.104 7.399 B O HOH 99 HETATM E O HOH 3 1.00 1 O 77.63 4.521 4.331 2.811 B O HOH 100 HETATM E O HOH 3 1.00 1 O 80.68 0.469 3.642 -14.699 B O HOH 101 HETATM E O HOH 3 1.00 1 O 70.74 2.331 2.290 2.577 B O HOH 102 HETATM E O HOH 3 1.00 1 O 70.66 6.806 23.165 12.306 B O HOH 103 HETATM E O HOH 3 1.00 1 O 0.028860 0.000000 0.000000 0.000000 0.023535 0.000000 0.000000 0.000000 0.015605 0.00000 0.00000 0.00000 Kondo, J. Umeda, S. Sunami, T. Takenaka, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 34.650 42.490 64.080 C9 H13 I N3 O7 P 433.094 n 5-IODO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N O N 16 N N N 17 N C N 18 N N N 19 N C N 20 N C N 21 N I N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C Y 51 N C N 52 N N Y 53 N N Y 54 N C Y 55 N N Y 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C N 83 N N N 84 N C N 85 N O N 86 N N N 87 N C N 88 N N N 89 N C N 90 N C N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N O N 106 N P N 107 N O N 108 N O N 109 N O N 110 N C N 111 R C N 112 N O N 113 S C N 114 N O N 115 N C N 116 R C Y 117 N N Y 118 N C Y 119 N N Y 120 N C N 121 N C N 122 N O N 123 N N N 124 N C N 125 N N N 126 N N Y 127 N C N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N O N 143 N H N 144 N H N 145 N K N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing Y 64 N sing Y 65 N doub N 66 N sing Y 67 N doub N 68 N sing N 69 N sing Y 70 N sing Y 71 N doub N 72 N sing Y 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing Y 132 N sing Y 133 N sing Y 134 N doub N 135 N sing Y 136 N sing N 137 N sing Y 138 N doub N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 32 2541 2549 10.1093/nar/gkh575 15133122 Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats 2004 10.2210/pdb1v3o/pdb pdb_00001v3o 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-03-27 OXFORD PX210 SINGLE WAVELENGTH M x-ray 1 0.90 1.0 BL44XU SPring-8 0.90 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 2602.540 5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3' 2 syn polymer 39.098 POTASSIUM ION 1 syn non-polymer 18.015 water 87 nat water no yes (DG)(C38)(DG)(DA)(DG)(DA)(DG)(DC) GCGAGAGC A,B polydeoxyribonucleotide n n n n n n n n 1 2.17 43.37 VAPOR DIFFUSION, HANGING DROP 7.0 2-methyl-2,4-pentanediol, spermine tetrahydrochloride, sodium chloride, potassium chloride, sodium cacodylate , pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 2-methyl-2,4-pentanediol 1 spermine tetrahydrochloride 1 sodium chloride 1 potassium chloride 1 sodium cacodylate 1 sodium chloride 2 potassium chloride 2 sodium cacodylate 2 -2.320 1 19 A 1 B 16 1.266 A_DG1:DC16_B 1 3.088 -0.406 0.178 -0.153 15.778 1 19 A 2 B 15 0.948 A_C382:DG15_B 2 7.229 0.281 -0.137 -0.050 35.446 9 11 A 3 B 14 14.482 A_DG3:DA14_B 3 -12.617 6.379 1.365 -4.123 -23.704 9 11 A 6 B 11 18.192 A_DA6:DG11_B 4 -14.916 -6.288 1.742 -4.203 -17.800 1 19 A 7 B 10 -0.555 A_DG7:C3810_B 5 3.390 -0.193 -0.293 -0.073 -2.851 1 19 A 8 B 9 -1.368 A_DC8:DG9_B 6 4.111 -0.050 0.161 -0.199 2.937 26.837 A A 1 2 7.917 B B 16 15 2.969 3.661 0.305 -0.145 AA_DG1C382:DG15DC16_BB 1 1.867 -4.039 26.526 -1.169 -0.219 3.324 56.737 A A 2 3 6.226 B B 15 14 3.136 5.905 0.143 2.084 AA_C382DG3:DA14DG15_BB 2 2.907 -3.065 56.386 1.868 0.010 3.611 55.072 A A 6 7 11.277 B B 11 10 3.418 10.372 -1.026 1.610 AA_DA6DG7:C3810DG11_BB 3 1.927 -2.095 54.130 1.075 1.233 3.037 29.611 A A 7 8 -1.454 B B 10 9 3.000 -0.742 -0.522 0.048 AA_DG7DC8:DG9C3810_BB 4 -3.445 6.756 29.405 0.238 0.347 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Other Data collection Database references Derived calculations Refinement description 1 0 2004-06-08 1 1 2008-04-27 1 2 2011-07-13 1 3 2014-04-16 1 4 2023-10-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id The same structure, Br-derivative The same structure, I-derivative, with I-motif of G-quartet PDBJ Y PDBJ 2003-11-03 REL K POTASSIUM ION HOH water 1V3N PDB ENTRY 1V3N PDB experimental model K 104 2 K K 104 A HOH 17 3 HOH HOH 17 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 22 3 HOH HOH 22 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 32 3 HOH HOH 32 A HOH 33 3 HOH HOH 33 A HOH 36 3 HOH HOH 36 A HOH 39 3 HOH HOH 39 A HOH 41 3 HOH HOH 41 A HOH 42 3 HOH HOH 42 A HOH 43 3 HOH HOH 43 A HOH 46 3 HOH HOH 46 A HOH 47 3 HOH HOH 47 A HOH 49 3 HOH HOH 49 A HOH 51 3 HOH HOH 51 A HOH 52 3 HOH HOH 52 A HOH 53 3 HOH HOH 53 A HOH 54 3 HOH HOH 54 A HOH 55 3 HOH HOH 55 A HOH 56 3 HOH HOH 56 A HOH 58 3 HOH HOH 58 A HOH 59 3 HOH HOH 59 A HOH 62 3 HOH HOH 62 A HOH 63 3 HOH HOH 63 A HOH 66 3 HOH HOH 66 A HOH 67 3 HOH HOH 67 A HOH 68 3 HOH HOH 68 A HOH 69 3 HOH HOH 69 A HOH 70 3 HOH HOH 70 A HOH 71 3 HOH HOH 71 A HOH 72 3 HOH HOH 72 A HOH 74 3 HOH HOH 74 A HOH 76 3 HOH HOH 76 A HOH 78 3 HOH HOH 78 A HOH 79 3 HOH HOH 79 A HOH 80 3 HOH HOH 80 A HOH 83 3 HOH HOH 83 A HOH 85 3 HOH HOH 85 A HOH 87 3 HOH HOH 87 A HOH 89 3 HOH HOH 89 A HOH 91 3 HOH HOH 91 A HOH 94 3 HOH HOH 94 A HOH 18 3 HOH HOH 18 B HOH 19 3 HOH HOH 19 B HOH 23 3 HOH HOH 23 B HOH 24 3 HOH HOH 24 B HOH 27 3 HOH HOH 27 B HOH 28 3 HOH HOH 28 B HOH 29 3 HOH HOH 29 B HOH 34 3 HOH HOH 34 B HOH 35 3 HOH HOH 35 B HOH 37 3 HOH HOH 37 B HOH 38 3 HOH HOH 38 B HOH 40 3 HOH HOH 40 B HOH 44 3 HOH HOH 44 B HOH 45 3 HOH HOH 45 B HOH 48 3 HOH HOH 48 B HOH 50 3 HOH HOH 50 B HOH 57 3 HOH HOH 57 B HOH 60 3 HOH HOH 60 B HOH 61 3 HOH HOH 61 B HOH 64 3 HOH HOH 64 B HOH 65 3 HOH HOH 65 B HOH 73 3 HOH HOH 73 B HOH 75 3 HOH HOH 75 B HOH 77 3 HOH HOH 77 B HOH 81 3 HOH HOH 81 B HOH 82 3 HOH HOH 82 B HOH 84 3 HOH HOH 84 B HOH 86 3 HOH HOH 86 B HOH 88 3 HOH HOH 88 B HOH 90 3 HOH HOH 90 B HOH 92 3 HOH HOH 92 B HOH 93 3 HOH HOH 93 B HOH 95 3 HOH HOH 95 B HOH 96 3 HOH HOH 96 B HOH 97 3 HOH HOH 97 B HOH 98 3 HOH HOH 98 B HOH 99 3 HOH HOH 99 B HOH 100 3 HOH HOH 100 B HOH 101 3 HOH HOH 101 B HOH 102 3 HOH HOH 102 B HOH 103 3 HOH HOH 103 B G 1 n 1 DG 1 A CID 2 n 2 C38 2 A G 3 n 3 DG 3 A A 4 n 4 DA 4 A G 5 n 5 DG 5 A A 6 n 6 DA 6 A G 7 n 7 DG 7 A C 8 n 8 DC 8 A G 9 n 1 DG 9 B CID 10 n 2 C38 10 B G 11 n 3 DG 11 B A 12 n 4 DA 12 B G 13 n 5 DG 13 B A 14 n 6 DA 14 B G 15 n 7 DG 15 B C 16 n 8 DC 16 B author_defined_assembly 4 tetrameric A DG 5 A O6 DG 5 1_555 A K 104 C K K 1_555 A DG 5 A O6 DG 5 3_555 62.6 A DG 5 A O6 DG 5 1_555 A K 104 C K K 1_555 A HOH 25 D O HOH 1_555 78.1 A DG 5 A O6 DG 5 3_555 A K 104 C K K 1_555 A HOH 25 D O HOH 1_555 123.0 A DG 5 A O6 DG 5 1_555 A K 104 C K K 1_555 A HOH 25 D O HOH 3_555 123.0 A DG 5 A O6 DG 5 3_555 A K 104 C K K 1_555 A HOH 25 D O HOH 3_555 78.1 A HOH 25 D O HOH 1_555 A K 104 C K K 1_555 A HOH 25 D O HOH 3_555 157.1 A DG 5 A O6 DG 5 1_555 A K 104 C K K 1_555 B DG 13 B O6 DG 5 1_555 85.0 A DG 5 A O6 DG 5 3_555 A K 104 C K K 1_555 B DG 13 B O6 DG 5 1_555 72.7 A HOH 25 D O HOH 1_555 A K 104 C K K 1_555 B DG 13 B O6 DG 5 1_555 63.8 A HOH 25 D O HOH 3_555 A K 104 C K K 1_555 B DG 13 B O6 DG 5 1_555 122.0 A DG 5 A O6 DG 5 1_555 A K 104 C K K 1_555 B DG 13 B O6 DG 5 3_555 72.7 A DG 5 A O6 DG 5 3_555 A K 104 C K K 1_555 B DG 13 B O6 DG 5 3_555 85.0 A HOH 25 D O HOH 1_555 A K 104 C K K 1_555 B DG 13 B O6 DG 5 3_555 122.0 A HOH 25 D O HOH 3_555 A K 104 C K K 1_555 B DG 13 B O6 DG 5 3_555 63.8 B DG 13 B O6 DG 5 1_555 A K 104 C K K 1_555 B DG 13 B O6 DG 5 3_555 154.0 A DG 5 A O6 DG 5 1_555 A K 104 C K K 1_555 B HOH 97 E O HOH 1_555 109.7 A DG 5 A O6 DG 5 3_555 A K 104 C K K 1_555 B HOH 97 E O HOH 1_555 148.1 A HOH 25 D O HOH 1_555 A K 104 C K K 1_555 B HOH 97 E O HOH 1_555 81.7 A HOH 25 D O HOH 3_555 A K 104 C K K 1_555 B HOH 97 E O HOH 1_555 82.5 B DG 13 B O6 DG 5 1_555 A K 104 C K K 1_555 B HOH 97 E O HOH 1_555 139.2 B DG 13 B O6 DG 5 3_555 A K 104 C K K 1_555 B HOH 97 E O HOH 1_555 63.6 A DG 5 A O6 DG 5 1_555 A K 104 C K K 1_555 B HOH 97 E O HOH 3_555 148.1 A DG 5 A O6 DG 5 3_555 A K 104 C K K 1_555 B HOH 97 E O HOH 3_555 109.7 A HOH 25 D O HOH 1_555 A K 104 C K K 1_555 B HOH 97 E O HOH 3_555 82.5 A HOH 25 D O HOH 3_555 A K 104 C K K 1_555 B HOH 97 E O HOH 3_555 81.7 B DG 13 B O6 DG 5 1_555 A K 104 C K K 1_555 B HOH 97 E O HOH 3_555 63.6 B DG 13 B O6 DG 5 3_555 A K 104 C K K 1_555 B HOH 97 E O HOH 3_555 139.2 B HOH 97 E O HOH 1_555 A K 104 C K K 1_555 B HOH 97 E O HOH 3_555 92.1 A C38 2 A C38 2 DC B C38 10 B C38 2 DC 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_555 -x,y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 A K 104 C K 1 B HOH 29 E HOH 0.296 0.262 1.7 9.0 528 5414 5063 93.5 RANDOM 1 3.0 MOLECULAR REPLACEMENT PDB ENTRY 1V3N G. PARKINSON ET AL., (1996) ACTACRYST. D52, 57-64 0.40 5.0 0.60 1.7 9.0 87 420 1 332 0 0.004 0.9 23.6 0.8 0.6045 0.5554 1.76 50 90.4 1.7 35 1V3O 5463 5269 0.0 0.0 0.096 1 4.2 96.5 0.137 1.7 1.76 1.9 527 1 100.0 data scaling d*TREK data scaling SCALA phasing AMoRE refinement CNS 1.0 data reduction d*TREK data scaling CCP4 (SCALA) Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex 1 N N 1 N N 2 N N 3 N N 3 N N The biological assembly is a quadruplex generated from the duplex in the asymmetric unit by the operations: x, y, z and -x, y, -z. covale 1.606 both A DG 1 A O3' DG 1 1_555 A C38 2 A P C38 2 1_555 covale 1.604 one A C38 2 A O3' C38 2 1_555 A DG 3 A P DG 3 1_555 covale 1.609 both B DG 9 B O3' DG 1 1_555 B C38 10 B P C38 2 1_555 covale 1.604 one B C38 10 B O3' C38 2 1_555 B DG 11 B P DG 3 1_555 metalc 2.674 A DG 5 A O6 DG 5 1_555 A K 104 C K K 1_555 metalc 2.674 A DG 5 A O6 DG 5 3_555 A K 104 C K K 1_555 metalc 3.025 A HOH 25 D O HOH 1_555 A K 104 C K K 1_555 metalc 3.025 A HOH 25 D O HOH 3_555 A K 104 C K K 1_555 metalc 2.888 A K 104 C K K 1_555 B DG 13 B O6 DG 5 1_555 metalc 2.888 A K 104 C K K 1_555 B DG 13 B O6 DG 5 3_555 metalc 3.166 A K 104 C K K 1_555 B HOH 97 E O HOH 1_555 metalc 3.166 A K 104 C K K 1_555 B HOH 97 E O HOH 3_555 hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 16 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 16 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 16 B N4 DC 8 1_555 hydrog WATSON-CRICK A C38 2 A N3 C38 2 1_555 B DG 15 B N1 DG 7 1_555 hydrog WATSON-CRICK A C38 2 A N4 C38 2 1_555 B DG 15 B O6 DG 7 1_555 hydrog WATSON-CRICK A C38 2 A O2 C38 2 1_555 B DG 15 B N2 DG 7 1_555 hydrog TYPE_11_PAIR A DG 3 A N2 DG 3 1_555 B DA 14 B N7 DA 6 1_555 hydrog TYPE_11_PAIR A DG 3 A N3 DG 3 1_555 B DA 14 B N6 DA 6 1_555 hydrog TYPE_11_PAIR A DA 6 A N6 DA 6 1_555 B DG 11 B N3 DG 3 1_555 hydrog TYPE_11_PAIR A DA 6 A N7 DA 6 1_555 B DG 11 B N2 DG 3 1_555 hydrog WATSON-CRICK A DG 7 A N1 DG 7 1_555 B C38 10 B N3 C38 2 1_555 hydrog WATSON-CRICK A DG 7 A N2 DG 7 1_555 B C38 10 B O2 C38 2 1_555 hydrog WATSON-CRICK A DG 7 A O6 DG 7 1_555 B C38 10 B N4 C38 2 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 9 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 9 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 9 B N2 DG 1 1_555 DNA octaplex, quadruplex, G-duet, base-intercalated duplex, base-intercalated motif, sheared G:A pair, DNA, deoxyribonucleic acid, X-ray analysis 1V3O PDB 1 1V3O 1 8 1V3O 1 8 1V3O A 1 1 8 9 16 1V3O 9 16 1V3O B 1 1 8 BINDING SITE FOR RESIDUE K A 104 A K 104 Software 6 A DG 5 A DG 5 6 3_555 A DG 5 A DG 5 6 1_555 A HOH 25 D HOH 6 3_555 A HOH 25 D HOH 6 1_555 B DG 13 B DG 5 6 1_555 B DG 13 B DG 5 6 3_555 23 I 2 2 2