0.010613 0.006128 0.000000 0.000000 0.012255 0.000000 0.000000 0.000000 0.006846 0.00000 0.00000 0.00000 Ishijima, J. Yutani, K. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 94.221 94.221 146.078 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C21 H27 N7 O14 P2 663.425 NICOTINAMIDE-ADENINE-DINUCLEOTIDE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 S P N 251 N O N 252 N O N 253 N O N 254 N C N 255 R C N 256 N O N 257 S C N 258 N O N 259 R C N 260 N O N 261 R C Y 262 N N Y 263 N C Y 264 N N Y 265 N C Y 266 N C N 267 N N Y 268 N N Y 269 N C Y 270 N N Y 271 N C N 272 N O N 273 N P N 274 N O N 275 N O N 276 N O N 277 N C N 278 R C N 279 N O N 280 S C N 281 N O N 282 R C N 283 N O N 284 R C Y 285 N N Y 286 N C Y 287 N C N 288 N C N 289 N O N 290 N N Y 291 N C Y 292 N C Y 293 N C N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N N N 345 S C N 346 N C N 347 N O N 348 N C N 349 N C N 350 N C N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N N N 362 S C N 363 N C N 364 N O N 365 N C N 366 N O N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N N N 376 S C N 377 N C N 378 N O N 379 R C N 380 N O N 381 N C N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N N Y 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N N N 420 S C N 421 N C N 422 N O N 423 N C Y 424 N C Y 425 N C Y 426 N C Y 427 N C Y 428 N C Y 429 N C N 430 N O N 431 N O N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N N N 444 S C N 445 N C N 446 N O N 447 N C N 448 N C N 449 N C N 450 N O N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing Y 260 N sing Y 261 N sing Y 262 N doub N 263 N sing Y 264 N sing Y 265 N sing Y 266 N doub N 267 N sing Y 268 N doub N 269 N sing N 270 N sing Y 271 N sing Y 272 N doub N 273 N sing Y 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing Y 297 N sing Y 298 N doub Y 299 N doub N 300 N sing N 301 N sing Y 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing Y 307 N doub N 308 N sing Y 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing Y 323 N doub Y 324 N sing Y 325 N sing N 326 N sing Y 327 N doub N 328 N sing Y 329 N doub N 330 N sing Y 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing Y 392 N doub Y 393 N sing Y 394 N sing N 395 N sing Y 396 N doub Y 397 N sing Y 398 N sing N 399 N sing Y 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing Y 420 N doub Y 421 N sing Y 422 N sing N 423 N sing Y 424 N doub N 425 N sing Y 426 N doub N 427 N sing Y 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N doub N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing To be Published 0353 Crystal structure of the Glyceraldehyde 3-Phosphate Dehydrogenase from Thermus thermophilus HB8 10.2210/pdb1vc2/pdb pdb_00001vc2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2003-05-28 RIGAKU JUPITER 210 mirror SINGLE WAVELENGTH M x-ray 1 1.0 1.0 BL26B1 SPring-8 1.0 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 35944.320 Glyceraldehyde 3-Phosphate Dehydrogenase 1.2.1.12 1 man polymer 663.425 NICOTINAMIDE-ADENINE-DINUCLEOTIDE 1 syn non-polymer 18.015 water 33 nat water no no MKVGINGFGRIGRQVFRILHERGVEVALINDLTDNKTLAHLLKYDSTYGRFPGAVGYDEENLYVDGKAIRATAIKDPREI PWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKVIITAPAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKV LEKAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAALNIIPTTTGAAKATALVLPSLKGRFDGMALRVPTPTGSISD ITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLRDIVMDPHSSIVDGKLTKAIGNLVKVFAWYDNEWGYANRVA DLVELVLKKGV MKVGINGFGRIGRQVFRILHERGVEVALINDLTDNKTLAHLLKYDSTYGRFPGAVGYDEENLYVDGKAIRATAIKDPREI PWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKVIITAPAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKV LEKAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAALNIIPTTTGAAKATALVLPSLKGRFDGMALRVPTPTGSISD ITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLRDIVMDPHSSIVDGKLTKAIGNLVKVFAWYDNEWGYANRVA DLVELVLKKGV A ttk003000466.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermus Escherichia sample 274 Thermus thermophilus 562 Escherichia coli PLASMID pET11a 1 2.57 51.68 MICROBATCH 5.0 PEG 4000, pH 5.0, Microbatch, temperature 291K 291 RIKEN Structural Genomics/Proteomics Initiative RSGI chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2004-03-16 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-10-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y PDBJ Y PDBJ 2004-03-04 REL REL NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HOH water 1CER PDB ENTRY 1CER PDB experimental model NAD 336 2 NAD NAD 336 A TIP 501 3 HOH HOH 501 A TIP 502 3 HOH HOH 502 A TIP 503 3 HOH HOH 503 A TIP 504 3 HOH HOH 504 A TIP 505 3 HOH HOH 505 A TIP 506 3 HOH HOH 506 A TIP 507 3 HOH HOH 507 A TIP 508 3 HOH HOH 508 A TIP 509 3 HOH HOH 509 A TIP 510 3 HOH HOH 510 A TIP 511 3 HOH HOH 511 A TIP 512 3 HOH HOH 512 A TIP 513 3 HOH HOH 513 A TIP 514 3 HOH HOH 514 A TIP 515 3 HOH HOH 515 A TIP 516 3 HOH HOH 516 A TIP 517 3 HOH HOH 517 A TIP 518 3 HOH HOH 518 A TIP 519 3 HOH HOH 519 A TIP 520 3 HOH HOH 520 A TIP 521 3 HOH HOH 521 A TIP 522 3 HOH HOH 522 A TIP 523 3 HOH HOH 523 A TIP 524 3 HOH HOH 524 A TIP 525 3 HOH HOH 525 A TIP 526 3 HOH HOH 526 A TIP 527 3 HOH HOH 527 A TIP 528 3 HOH HOH 528 A TIP 529 3 HOH HOH 529 A TIP 530 3 HOH HOH 530 A TIP 531 3 HOH HOH 531 A TIP 532 3 HOH HOH 532 A TIP 533 3 HOH HOH 533 A MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A VAL 3 n 3 VAL 3 A GLY 4 n 4 GLY 4 A ILE 5 n 5 ILE 5 A ASN 6 n 6 ASN 6 A GLY 7 n 7 GLY 7 A PHE 8 n 8 PHE 8 A GLY 9 n 9 GLY 9 A ARG 10 n 10 ARG 10 A ILE 11 n 11 ILE 11 A GLY 12 n 12 GLY 12 A ARG 13 n 13 ARG 13 A GLN 14 n 14 GLN 14 A VAL 15 n 15 VAL 15 A PHE 16 n 16 PHE 16 A ARG 17 n 17 ARG 17 A ILE 18 n 18 ILE 18 A LEU 19 n 19 LEU 19 A HIS 20 n 20 HIS 20 A GLU 21 n 21 GLU 21 A ARG 22 n 22 ARG 22 A GLY 23 n 23 GLY 23 A VAL 24 n 24 VAL 24 A GLU 25 n 25 GLU 25 A VAL 26 n 26 VAL 26 A ALA 27 n 27 ALA 27 A LEU 28 n 28 LEU 28 A ILE 29 n 29 ILE 29 A ASN 30 n 30 ASN 30 A ASP 31 n 31 ASP 31 A LEU 32 n 32 LEU 32 A THR 33 n 33 THR 33 A ASP 34 n 34 ASP 34 A ASN 35 n 35 ASN 35 A LYS 36 n 36 LYS 36 A THR 37 n 37 THR 37 A LEU 38 n 38 LEU 38 A ALA 39 n 39 ALA 39 A HIS 40 n 40 HIS 40 A LEU 41 n 41 LEU 41 A LEU 42 n 42 LEU 42 A LYS 43 n 43 LYS 43 A TYR 44 n 44 TYR 44 A ASP 45 n 45 ASP 45 A SER 46 n 46 SER 46 A THR 47 n 47 THR 47 A TYR 48 n 48 TYR 48 A GLY 49 n 49 GLY 49 A ARG 50 n 50 ARG 50 A PHE 51 n 51 PHE 51 A PRO 52 n 52 PRO 52 A GLY 53 n 53 GLY 53 A ALA 54 n 54 ALA 54 A VAL 55 n 55 VAL 55 A GLY 56 n 56 GLY 56 A TYR 57 n 57 TYR 57 A ASP 58 n 58 ASP 58 A GLU 59 n 59 GLU 59 A GLU 60 n 60 GLU 60 A ASN 61 n 61 ASN 61 A LEU 62 n 62 LEU 62 A TYR 63 n 63 TYR 63 A VAL 64 n 64 VAL 64 A ASP 65 n 65 ASP 65 A GLY 66 n 66 GLY 66 A LYS 67 n 67 LYS 67 A ALA 68 n 68 ALA 68 A ILE 69 n 69 ILE 69 A ARG 70 n 70 ARG 70 A ALA 71 n 71 ALA 71 A THR 72 n 72 THR 72 A ALA 73 n 73 ALA 73 A ILE 74 n 74 ILE 74 A LYS 75 n 75 LYS 75 A ASP 76 n 76 ASP 76 A PRO 77 n 77 PRO 77 A ARG 78 n 78 ARG 78 A GLU 79 n 79 GLU 79 A ILE 80 n 80 ILE 80 A PRO 81 n 81 PRO 81 A TRP 82 n 82 TRP 82 A LYS 83 n 83 LYS 83 A GLN 84 n 84 GLN 84 A ALA 85 n 85 ALA 85 A GLY 86 n 86 GLY 86 A VAL 87 n 87 VAL 87 A GLY 88 n 88 GLY 88 A VAL 89 n 89 VAL 89 A VAL 90 n 90 VAL 90 A VAL 91 n 91 VAL 91 A GLU 92 n 92 GLU 92 A SER 93 n 93 SER 93 A THR 94 n 94 THR 94 A GLY 95 n 95 GLY 95 A VAL 96 n 96 VAL 96 A PHE 97 n 97 PHE 97 A THR 98 n 98 THR 98 A ASP 99 n 99 ASP 99 A GLY 100 n 100 GLY 100 A GLU 101 n 101 GLU 101 A LYS 102 n 102 LYS 102 A ALA 103 n 103 ALA 103 A ARG 104 n 104 ARG 104 A ALA 105 n 105 ALA 105 A HIS 106 n 106 HIS 106 A LEU 107 n 107 LEU 107 A GLU 108 n 108 GLU 108 A ALA 109 n 109 ALA 109 A GLY 110 n 110 GLY 110 A ALA 111 n 111 ALA 111 A LYS 112 n 112 LYS 112 A LYS 113 n 113 LYS 113 A VAL 114 n 114 VAL 114 A ILE 115 n 115 ILE 115 A ILE 116 n 116 ILE 116 A THR 117 n 117 THR 117 A ALA 118 n 118 ALA 118 A PRO 119 n 119 PRO 119 A ALA 120 n 120 ALA 120 A LYS 121 n 121 LYS 121 A ASN 122 n 122 ASN 122 A GLU 123 n 123 GLU 123 A ASP 124 n 124 ASP 124 A ILE 125 n 125 ILE 125 A THR 126 n 126 THR 126 A VAL 127 n 127 VAL 127 A VAL 128 n 128 VAL 128 A LEU 129 n 129 LEU 129 A GLY 130 n 130 GLY 130 A VAL 131 n 131 VAL 131 A ASN 132 n 132 ASN 132 A HIS 133 n 133 HIS 133 A GLU 134 n 134 GLU 134 A GLN 135 n 135 GLN 135 A TYR 136 n 136 TYR 136 A ASP 137 n 137 ASP 137 A PRO 138 n 138 PRO 138 A ALA 139 n 139 ALA 139 A LYS 140 n 140 LYS 140 A HIS 141 n 141 HIS 141 A HIS 142 n 142 HIS 142 A ILE 143 n 143 ILE 143 A LEU 144 n 144 LEU 144 A SER 145 n 145 SER 145 A ASN 146 n 146 ASN 146 A ALA 147 n 147 ALA 147 A SER 148 n 148 SER 148 A CYS 149 n 149 CYS 149 A THR 150 n 150 THR 150 A THR 151 n 151 THR 151 A ASN 152 n 152 ASN 152 A SER 153 n 153 SER 153 A LEU 154 n 154 LEU 154 A ALA 155 n 155 ALA 155 A PRO 156 n 156 PRO 156 A VAL 157 n 157 VAL 157 A MET 158 n 158 MET 158 A LYS 159 n 159 LYS 159 A VAL 160 n 160 VAL 160 A LEU 161 n 161 LEU 161 A GLU 162 n 162 GLU 162 A LYS 163 n 163 LYS 163 A ALA 164 n 164 ALA 164 A PHE 165 n 165 PHE 165 A GLY 166 n 166 GLY 166 A VAL 167 n 167 VAL 167 A GLU 168 n 168 GLU 168 A LYS 169 n 169 LYS 169 A ALA 170 n 170 ALA 170 A LEU 171 n 171 LEU 171 A MET 172 n 172 MET 172 A THR 173 n 173 THR 173 A THR 174 n 174 THR 174 A VAL 175 n 175 VAL 175 A HIS 176 n 176 HIS 176 A SER 177 n 177 SER 177 A TYR 178 n 178 TYR 178 A THR 179 n 179 THR 179 A ASN 180 n 180 ASN 180 A ASP 181 n 181 ASP 181 A GLN 182 n 182 GLN 182 A ARG 183 n 183 ARG 183 A LEU 184 n 184 LEU 184 A LEU 185 n 185 LEU 185 A ASP 186 n 186 ASP 186 A LEU 187 n 187 LEU 187 A PRO 188 n 188 PRO 188 A HIS 189 n 189 HIS 189 A LYS 190 n 190 LYS 190 A ASP 191 n 191 ASP 191 A LEU 192 n 192 LEU 192 A ARG 193 n 193 ARG 193 A ARG 194 n 194 ARG 194 A ALA 195 n 195 ALA 195 A ARG 196 n 196 ARG 196 A ALA 197 n 197 ALA 197 A ALA 198 n 198 ALA 198 A ALA 199 n 199 ALA 199 A LEU 200 n 200 LEU 200 A ASN 201 n 201 ASN 201 A ILE 202 n 202 ILE 202 A ILE 203 n 203 ILE 203 A PRO 204 n 204 PRO 204 A THR 205 n 205 THR 205 A THR 206 n 206 THR 206 A THR 207 n 207 THR 207 A GLY 208 n 208 GLY 208 A ALA 209 n 209 ALA 209 A ALA 210 n 210 ALA 210 A LYS 211 n 211 LYS 211 A ALA 212 n 212 ALA 212 A THR 213 n 213 THR 213 A ALA 214 n 214 ALA 214 A LEU 215 n 215 LEU 215 A VAL 216 n 216 VAL 216 A LEU 217 n 217 LEU 217 A PRO 218 n 218 PRO 218 A SER 219 n 219 SER 219 A LEU 220 n 220 LEU 220 A LYS 221 n 221 LYS 221 A GLY 222 n 222 GLY 222 A ARG 223 n 223 ARG 223 A PHE 224 n 224 PHE 224 A ASP 225 n 225 ASP 225 A GLY 226 n 226 GLY 226 A MET 227 n 227 MET 227 A ALA 228 n 228 ALA 228 A LEU 229 n 229 LEU 229 A ARG 230 n 230 ARG 230 A VAL 231 n 231 VAL 231 A PRO 232 n 232 PRO 232 A THR 233 n 233 THR 233 A PRO 234 n 234 PRO 234 A THR 235 n 235 THR 235 A GLY 236 n 236 GLY 236 A SER 237 n 237 SER 237 A ILE 238 n 238 ILE 238 A SER 239 n 239 SER 239 A ASP 240 n 240 ASP 240 A ILE 241 n 241 ILE 241 A THR 242 n 242 THR 242 A ALA 243 n 243 ALA 243 A LEU 244 n 244 LEU 244 A LEU 245 n 245 LEU 245 A LYS 246 n 246 LYS 246 A ARG 247 n 247 ARG 247 A GLU 248 n 248 GLU 248 A VAL 249 n 249 VAL 249 A THR 250 n 250 THR 250 A ALA 251 n 251 ALA 251 A GLU 252 n 252 GLU 252 A GLU 253 n 253 GLU 253 A VAL 254 n 254 VAL 254 A ASN 255 n 255 ASN 255 A ALA 256 n 256 ALA 256 A ALA 257 n 257 ALA 257 A LEU 258 n 258 LEU 258 A LYS 259 n 259 LYS 259 A ALA 260 n 260 ALA 260 A ALA 261 n 261 ALA 261 A ALA 262 n 262 ALA 262 A GLU 263 n 263 GLU 263 A GLY 264 n 264 GLY 264 A PRO 265 n 265 PRO 265 A LEU 266 n 266 LEU 266 A LYS 267 n 267 LYS 267 A GLY 268 n 268 GLY 268 A ILE 269 n 269 ILE 269 A LEU 270 n 270 LEU 270 A ALA 271 n 271 ALA 271 A TYR 272 n 272 TYR 272 A THR 273 n 273 THR 273 A GLU 274 n 274 GLU 274 A ASP 275 n 275 ASP 275 A GLU 276 n 276 GLU 276 A ILE 277 n 277 ILE 277 A VAL 278 n 278 VAL 278 A LEU 279 n 279 LEU 279 A ARG 280 n 280 ARG 280 A ASP 281 n 281 ASP 281 A ILE 282 n 282 ILE 282 A VAL 283 n 283 VAL 283 A MET 284 n 284 MET 284 A ASP 285 n 285 ASP 285 A PRO 286 n 286 PRO 286 A HIS 287 n 287 HIS 287 A SER 288 n 288 SER 288 A SER 289 n 289 SER 289 A ILE 290 n 290 ILE 290 A VAL 291 n 291 VAL 291 A ASP 292 n 292 ASP 292 A GLY 293 n 293 GLY 293 A LYS 294 n 294 LYS 294 A LEU 295 n 295 LEU 295 A THR 296 n 296 THR 296 A LYS 297 n 297 LYS 297 A ALA 298 n 298 ALA 298 A ILE 299 n 299 ILE 299 A GLY 300 n 300 GLY 300 A ASN 301 n 301 ASN 301 A LEU 302 n 302 LEU 302 A VAL 303 n 303 VAL 303 A LYS 304 n 304 LYS 304 A VAL 305 n 305 VAL 305 A PHE 306 n 306 PHE 306 A ALA 307 n 307 ALA 307 A TRP 308 n 308 TRP 308 A TYR 309 n 309 TYR 309 A ASP 310 n 310 ASP 310 A ASN 311 n 311 ASN 311 A GLU 312 n 312 GLU 312 A TRP 313 n 313 TRP 313 A GLY 314 n 314 GLY 314 A TYR 315 n 315 TYR 315 A ALA 316 n 316 ALA 316 A ASN 317 n 317 ASN 317 A ARG 318 n 318 ARG 318 A VAL 319 n 319 VAL 319 A ALA 320 n 320 ALA 320 A ASP 321 n 321 ASP 321 A LEU 322 n 322 LEU 322 A VAL 323 n 323 VAL 323 A GLU 324 n 324 GLU 324 A LEU 325 n 325 LEU 325 A VAL 326 n 326 VAL 326 A LEU 327 n 327 LEU 327 A LYS 328 n 328 LYS 328 A LYS 329 n 329 LYS 329 A GLY 330 n 330 GLY 330 A VAL 331 n 331 VAL 331 A author_and_software_defined_assembly PISA,PQS 4 tetrameric 20170 -141 42390 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4_655 -x+1,-y,z crystal symmetry operation 94.2210000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_554 x-y,-y,-z-1 crystal symmetry operation 0.0000000000 0.0000000000 -146.0780000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 11_654 -x+y+1,y,-z-1 crystal symmetry operation 94.2210000000 0.0000000000 -146.0780000000 A N GLY 56 A N GLY 56 A O TYR 63 A O TYR 63 A N LEU 62 A N LEU 62 A O ILE 69 A O ILE 69 A O ARG 70 A O ARG 70 A N ILE 29 A N ILE 29 A O ALA 27 A O ALA 27 A N VAL 3 A N VAL 3 A N GLY 4 A N GLY 4 A O VAL 91 A O VAL 91 A N VAL 90 A N VAL 90 A O ILE 115 A O ILE 115 A N ILE 116 A N ILE 116 A O LEU 144 A O LEU 144 A O SER 145 A O SER 145 A N ILE 125 A N ILE 125 A N ASP 45 A N ASP 45 A O GLY 49 A O GLY 49 A N ILE 203 A N ILE 203 A O ARG 230 A O ARG 230 A O LEU 229 A O LEU 229 A N THR 174 A N THR 174 A N THR 173 A N THR 173 A O ASP 240 A O ASP 240 A N ILE 241 A N ILE 241 A O VAL 305 A O VAL 305 A O TRP 308 A O TRP 308 A N ILE 290 A N ILE 290 A O VAL 291 A O VAL 291 A N ALA 271 A N ALA 271 A N ILE 203 A N ILE 203 A O ARG 230 A O ARG 230 A O LEU 229 A O LEU 229 A N THR 174 A N THR 174 A N THR 173 A N THR 173 A O ASP 240 A O ASP 240 A N ILE 241 A N ILE 241 A O VAL 305 A O VAL 305 A O LEU 302 A O LEU 302 A N ILE 299 A N ILE 299 1 A ILE 202 12.09 1 A GLU 21 -56.31 -7.73 1 A PRO 52 -68.42 83.46 1 A LYS 67 -39.60 121.20 1 A PRO 81 -60.63 41.84 1 A GLN 84 -70.54 26.56 1 A GLU 108 -75.88 41.75 1 A ALA 109 -159.44 4.36 1 A ALA 111 -35.87 144.39 1 A ALA 118 169.52 165.19 1 A PRO 119 -58.75 108.83 1 A ASN 132 -151.83 41.77 1 A GLU 134 -59.40 -8.95 1 A HIS 142 -151.02 -24.34 1 A ALA 147 65.97 -144.87 1 A LYS 163 -81.60 32.78 1 A ALA 164 -152.45 -50.01 1 A ASN 180 -57.34 -9.94 1 A LEU 192 -67.18 7.79 1 A ARG 194 -66.90 0.37 1 A PRO 232 -61.56 65.57 1 A THR 235 -170.56 141.15 1 A ARG 247 -176.36 139.00 1 A TYR 309 -172.57 140.25 1 A ASN 311 -46.17 -13.39 1 A GLU 312 -104.47 -70.45 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM NAD.TOP NAD.PARAM WATER.TOP 62.4 11.91 12.85 0.00 11.91 0.00 -23.82 0.286 0.008 0.225 0.231 0.225 2.60 44.84 1200 11633 11633 10.3 93.9 RANDOM 462446.64 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1CER Engh & Huber FLAT MODEL 38.0101 0.313972 0.49 0.38 5.00 0.49 0.46 2.60 44.84 33 2606 44 0 2529 0.008 1.4 24.1 0.93 1.30 1.50 2.23 2.00 1.61 2.00 2.50 2.50 0.39 0.030 0.344 2.76 165 1597 1762 6 9.4 87.7 53.1 2.6 50 1VC2 12645 12645 0 0 0.092 1 11.3 99.8 0.502 2.60 2.69 1.5 1230 1 10.0 99.9 refinement CNS 1.1 data reduction HKL-2000 data scaling SCALEPACK phasing CNS 1.1 Crystal structure of Glyceraldehyde 3-Phosphate Dehydrogenase from Thermus thermophilus HB8 1 N N 2 N N 3 N N The biological assembly is a tetramer A GLY 9 A GLY 9 HELX_P A GLY 23 A GLY 23 1 1 15 A ASP 34 A ASP 34 HELX_P A LYS 43 A LYS 43 1 2 10 A ASP 76 A ASP 76 HELX_P A ILE 80 A ILE 80 5 3 5 A ASP 99 A ASP 99 HELX_P A ARG 104 A ARG 104 1 4 6 A ALA 105 A ALA 105 HELX_P A GLY 110 A GLY 110 5 5 6 A THR 150 A THR 150 HELX_P A LYS 163 A LYS 163 1 6 14 A GLY 208 A GLY 208 HELX_P A ALA 214 A ALA 214 1 7 7 A LEU 217 A LEU 217 HELX_P A LYS 221 A LYS 221 5 8 5 A THR 250 A THR 250 HELX_P A GLY 264 A GLY 264 1 9 15 A VAL 278 A VAL 278 HELX_P A ILE 282 A ILE 282 5 10 5 A LYS 294 A LYS 294 HELX_P A THR 296 A THR 296 5 11 3 A GLU 312 A GLU 312 HELX_P A LYS 329 A LYS 329 1 12 18 OXIDOREDUCTASE glyceraldehyde 3-phosphate dehydrogenase, Thermus thermophilus, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, OXIDOREDUCTASE P84125_THETH UNP 1 1 P84125 1 331 1VC2 1 331 P84125 A 1 1 331 9 2 7 6 anti-parallel anti-parallel parallel parallel parallel parallel parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A VAL 55 A VAL 55 A TYR 57 A TYR 57 A ASN 61 A ASN 61 A VAL 64 A VAL 64 A LYS 67 A LYS 67 A THR 72 A THR 72 A VAL 26 A VAL 26 A ASN 30 A ASN 30 A LYS 2 A LYS 2 A ASN 6 A ASN 6 A VAL 87 A VAL 87 A GLU 92 A GLU 92 A LYS 113 A LYS 113 A ILE 116 A ILE 116 A ILE 143 A ILE 143 A SER 145 A SER 145 A ILE 125 A ILE 125 A THR 126 A THR 126 A TYR 44 A TYR 44 A ASP 45 A ASP 45 A GLY 49 A GLY 49 A ARG 50 A ARG 50 A ILE 203 A ILE 203 A THR 206 A THR 206 A PHE 224 A PHE 224 A VAL 231 A VAL 231 A VAL 167 A VAL 167 A SER 177 A SER 177 A SER 237 A SER 237 A LEU 245 A LEU 245 A LEU 302 A LEU 302 A TYR 309 A TYR 309 A SER 289 A SER 289 A ASP 292 A ASP 292 A LEU 270 A LEU 270 A THR 273 A THR 273 A ILE 203 A ILE 203 A THR 206 A THR 206 A PHE 224 A PHE 224 A VAL 231 A VAL 231 A VAL 167 A VAL 167 A SER 177 A SER 177 A SER 237 A SER 237 A LEU 245 A LEU 245 A LEU 302 A LEU 302 A TYR 309 A TYR 309 A LYS 297 A LYS 297 A ILE 299 A ILE 299 BINDING SITE FOR RESIDUE NAD A 336 A NAD 336 Software 20 A GLY 7 A GLY 7 20 1_555 A GLY 9 A GLY 9 20 1_555 A ARG 10 A ARG 10 20 1_555 A ILE 11 A ILE 11 20 1_555 A ASP 31 A ASP 31 20 1_555 A LEU 32 A LEU 32 20 1_555 A LYS 75 A LYS 75 20 1_555 A SER 93 A SER 93 20 1_555 A THR 94 A THR 94 20 1_555 A GLY 95 A GLY 95 20 1_555 A THR 117 A THR 117 20 1_555 A ALA 118 A ALA 118 20 1_555 A CYS 149 A CYS 149 20 1_555 A THR 179 A THR 179 20 1_555 A ASN 180 A ASN 180 20 1_555 A LEU 187 A LEU 187 20 4_655 A ASN 311 A ASN 311 20 1_555 A TYR 315 A TYR 315 20 1_555 A HOH 502 C HOH 20 1_555 A HOH 522 C HOH 20 1_555 180 P 62 2 2