0.007740
0.000000
0.004343
0.000000
0.016447
0.000000
0.000000
0.000000
0.020153
0.00000
0.00000
0.00000
CIS PROLINE - PRO A 8
CIS PROLINE - PRO A 95
Bhat, T.N.
Poljak, R.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
119.30
90.00
129.200
60.800
56.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
91
1089
1093
10.1073/pnas.91.3.1089
8302837
Bound water molecules and conformational stabilization help mediate an antigen-antibody association.
1994
UK
Nature
NATUAS
0006
0028-0836
347
483
Small Rearrangements in Structures of Fv and Fab Fragments of an Antibody D1.3 On Antigen Binding
1990
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
11700.977
IGG1-KAPPA D1.3 FV (LIGHT CHAIN)
1
man
polymer
12857.275
IGG1-KAPPA D1.3 FV (HEAVY CHAIN)
1
man
polymer
14331.160
HEN EGG WHITE LYSOZYME
1
man
polymer
18.015
water
48
nat
water
no
no
DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQP
EDFGSYYCQHFWSTPRTFGGGTKLEIK
DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQP
EDFGSYYCQHFWSTPRTFGGGTKLEIK
A
polypeptide(L)
no
no
QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFL
KMNSLHTDDTARYYCARERDYRLDYWGQGTTLTVSS
QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFL
KMNSLHTDDTARYYCARERDYRLDYWGQGTTLTVSS
B
polypeptide(L)
no
no
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
10090
EGG
Mus musculus
562
Escherichia coli
house mouse
Mus
Escherichia
sample
10090
EGG
Mus musculus
562
Escherichia coli
chicken
Gallus
sample
9031
Gallus gallus
2.51
50.90
repository
Initial release
Version format compliance
Version format compliance
1
0
1994-05-31
1
1
2008-03-24
1
2
2011-07-13
Y
1993-12-03
REL
HOH
water
HOH
145
4
HOH
HOH
145
A
HOH
173
4
HOH
HOH
173
A
HOH
174
4
HOH
HOH
174
A
HOH
179
4
HOH
HOH
179
A
HOH
183
4
HOH
HOH
183
A
HOH
271
4
HOH
HOH
271
A
HOH
292
4
HOH
HOH
292
A
HOH
358
4
HOH
HOH
358
A
HOH
149
4
HOH
HOH
149
B
HOH
150
4
HOH
HOH
150
B
HOH
177
4
HOH
HOH
177
B
HOH
178
4
HOH
HOH
178
B
HOH
180
4
HOH
HOH
180
B
HOH
218
4
HOH
HOH
218
B
HOH
223
4
HOH
HOH
223
B
HOH
245
4
HOH
HOH
245
B
HOH
246
4
HOH
HOH
246
B
HOH
257
4
HOH
HOH
257
B
HOH
276
4
HOH
HOH
276
B
HOH
306
4
HOH
HOH
306
B
HOH
308
4
HOH
HOH
308
B
HOH
322
4
HOH
HOH
322
B
HOH
152
4
HOH
HOH
152
C
HOH
155
4
HOH
HOH
155
C
HOH
156
4
HOH
HOH
156
C
HOH
169
4
HOH
HOH
169
C
HOH
181
4
HOH
HOH
181
C
HOH
198
4
HOH
HOH
198
C
HOH
200
4
HOH
HOH
200
C
HOH
222
4
HOH
HOH
222
C
HOH
227
4
HOH
HOH
227
C
HOH
228
4
HOH
HOH
228
C
HOH
233
4
HOH
HOH
233
C
HOH
244
4
HOH
HOH
244
C
HOH
272
4
HOH
HOH
272
C
HOH
273
4
HOH
HOH
273
C
HOH
277
4
HOH
HOH
277
C
HOH
282
4
HOH
HOH
282
C
HOH
291
4
HOH
HOH
291
C
HOH
294
4
HOH
HOH
294
C
HOH
296
4
HOH
HOH
296
C
HOH
304
4
HOH
HOH
304
C
HOH
309
4
HOH
HOH
309
C
HOH
310
4
HOH
HOH
310
C
HOH
333
4
HOH
HOH
333
C
HOH
365
4
HOH
HOH
365
C
HOH
377
4
HOH
HOH
377
C
HOH
384
4
HOH
HOH
384
C
ASP
1
n
1
ASP
1
A
ILE
2
n
2
ILE
2
A
VAL
3
n
3
VAL
3
A
LEU
4
n
4
LEU
4
A
THR
5
n
5
THR
5
A
GLN
6
n
6
GLN
6
A
SER
7
n
7
SER
7
A
PRO
8
n
8
PRO
8
A
ALA
9
n
9
ALA
9
A
SER
10
n
10
SER
10
A
LEU
11
n
11
LEU
11
A
SER
12
n
12
SER
12
A
ALA
13
n
13
ALA
13
A
SER
14
n
14
SER
14
A
VAL
15
n
15
VAL
15
A
GLY
16
n
16
GLY
16
A
GLU
17
n
17
GLU
17
A
THR
18
n
18
THR
18
A
VAL
19
n
19
VAL
19
A
THR
20
n
20
THR
20
A
ILE
21
n
21
ILE
21
A
THR
22
n
22
THR
22
A
CYS
23
n
23
CYS
23
A
ARG
24
n
24
ARG
24
A
ALA
25
n
25
ALA
25
A
SER
26
n
26
SER
26
A
GLY
27
n
27
GLY
27
A
ASN
28
n
28
ASN
28
A
ILE
29
n
29
ILE
29
A
HIS
30
n
30
HIS
30
A
ASN
31
n
31
ASN
31
A
TYR
32
n
32
TYR
32
A
LEU
33
n
33
LEU
33
A
ALA
34
n
34
ALA
34
A
TRP
35
n
35
TRP
35
A
TYR
36
n
36
TYR
36
A
GLN
37
n
37
GLN
37
A
GLN
38
n
38
GLN
38
A
LYS
39
n
39
LYS
39
A
GLN
40
n
40
GLN
40
A
GLY
41
n
41
GLY
41
A
LYS
42
n
42
LYS
42
A
SER
43
n
43
SER
43
A
PRO
44
n
44
PRO
44
A
GLN
45
n
45
GLN
45
A
LEU
46
n
46
LEU
46
A
LEU
47
n
47
LEU
47
A
VAL
48
n
48
VAL
48
A
TYR
49
n
49
TYR
49
A
TYR
50
n
50
TYR
50
A
THR
51
n
51
THR
51
A
THR
52
n
52
THR
52
A
THR
53
n
53
THR
53
A
LEU
54
n
54
LEU
54
A
ALA
55
n
55
ALA
55
A
ASP
56
n
56
ASP
56
A
GLY
57
n
57
GLY
57
A
VAL
58
n
58
VAL
58
A
PRO
59
n
59
PRO
59
A
SER
60
n
60
SER
60
A
ARG
61
n
61
ARG
61
A
PHE
62
n
62
PHE
62
A
SER
63
n
63
SER
63
A
GLY
64
n
64
GLY
64
A
SER
65
n
65
SER
65
A
GLY
66
n
66
GLY
66
A
SER
67
n
67
SER
67
A
GLY
68
n
68
GLY
68
A
THR
69
n
69
THR
69
A
GLN
70
n
70
GLN
70
A
TYR
71
n
71
TYR
71
A
SER
72
n
72
SER
72
A
LEU
73
n
73
LEU
73
A
LYS
74
n
74
LYS
74
A
ILE
75
n
75
ILE
75
A
ASN
76
n
76
ASN
76
A
SER
77
n
77
SER
77
A
LEU
78
n
78
LEU
78
A
GLN
79
n
79
GLN
79
A
PRO
80
n
80
PRO
80
A
GLU
81
n
81
GLU
81
A
ASP
82
n
82
ASP
82
A
PHE
83
n
83
PHE
83
A
GLY
84
n
84
GLY
84
A
SER
85
n
85
SER
85
A
TYR
86
n
86
TYR
86
A
TYR
87
n
87
TYR
87
A
CYS
88
n
88
CYS
88
A
GLN
89
n
89
GLN
89
A
HIS
90
n
90
HIS
90
A
PHE
91
n
91
PHE
91
A
TRP
92
n
92
TRP
92
A
SER
93
n
93
SER
93
A
THR
94
n
94
THR
94
A
PRO
95
n
95
PRO
95
A
ARG
96
n
96
ARG
96
A
THR
97
n
97
THR
97
A
PHE
98
n
98
PHE
98
A
GLY
99
n
99
GLY
99
A
GLY
100
n
100
GLY
100
A
GLY
101
n
101
GLY
101
A
THR
102
n
102
THR
102
A
LYS
103
n
103
LYS
103
A
LEU
104
n
104
LEU
104
A
GLU
105
n
105
GLU
105
A
ILE
106
n
106
ILE
106
A
LYS
107
n
107
LYS
107
A
GLN
1
n
1
GLN
1
B
VAL
2
n
2
VAL
2
B
GLN
3
n
3
GLN
3
B
LEU
4
n
4
LEU
4
B
GLN
5
n
5
GLN
5
B
GLU
6
n
6
GLU
6
B
SER
7
n
7
SER
7
B
GLY
8
n
8
GLY
8
B
PRO
9
n
9
PRO
9
B
GLY
10
n
10
GLY
10
B
LEU
11
n
11
LEU
11
B
VAL
12
n
12
VAL
12
B
ALA
13
n
13
ALA
13
B
PRO
14
n
14
PRO
14
B
SER
15
n
15
SER
15
B
GLN
16
n
16
GLN
16
B
SER
17
n
17
SER
17
B
LEU
18
n
18
LEU
18
B
SER
19
n
19
SER
19
B
ILE
20
n
20
ILE
20
B
THR
21
n
21
THR
21
B
CYS
22
n
22
CYS
22
B
THR
23
n
23
THR
23
B
VAL
24
n
24
VAL
24
B
SER
25
n
25
SER
25
B
GLY
26
n
26
GLY
26
B
PHE
27
n
27
PHE
27
B
SER
28
n
28
SER
28
B
LEU
29
n
29
LEU
29
B
THR
30
n
30
THR
30
B
GLY
31
n
31
GLY
31
B
TYR
32
n
32
TYR
32
B
GLY
33
n
33
GLY
33
B
VAL
34
n
34
VAL
34
B
ASN
35
n
35
ASN
35
B
TRP
36
n
36
TRP
36
B
VAL
37
n
37
VAL
37
B
ARG
38
n
38
ARG
38
B
GLN
39
n
39
GLN
39
B
PRO
40
n
40
PRO
40
B
PRO
41
n
41
PRO
41
B
GLY
42
n
42
GLY
42
B
LYS
43
n
43
LYS
43
B
GLY
44
n
44
GLY
44
B
LEU
45
n
45
LEU
45
B
GLU
46
n
46
GLU
46
B
TRP
47
n
47
TRP
47
B
LEU
48
n
48
LEU
48
B
GLY
49
n
49
GLY
49
B
MET
50
n
50
MET
50
B
ILE
51
n
51
ILE
51
B
TRP
52
n
52
TRP
52
B
GLY
53
n
53
GLY
53
B
ASP
54
n
54
ASP
54
B
GLY
55
n
55
GLY
55
B
ASN
56
n
56
ASN
56
B
THR
57
n
57
THR
57
B
ASP
58
n
58
ASP
58
B
TYR
59
n
59
TYR
59
B
ASN
60
n
60
ASN
60
B
SER
61
n
61
SER
61
B
ALA
62
n
62
ALA
62
B
LEU
63
n
63
LEU
63
B
LYS
64
n
64
LYS
64
B
SER
65
n
65
SER
65
B
ARG
66
n
66
ARG
66
B
LEU
67
n
67
LEU
67
B
SER
68
n
68
SER
68
B
ILE
69
n
69
ILE
69
B
SER
70
n
70
SER
70
B
LYS
71
n
71
LYS
71
B
ASP
72
n
72
ASP
72
B
ASN
73
n
73
ASN
73
B
SER
74
n
74
SER
74
B
LYS
75
n
75
LYS
75
B
SER
76
n
76
SER
76
B
GLN
77
n
77
GLN
77
B
VAL
78
n
78
VAL
78
B
PHE
79
n
79
PHE
79
B
LEU
80
n
80
LEU
80
B
LYS
81
n
81
LYS
81
B
MET
82
n
82
MET
82
B
ASN
83
n
83
ASN
83
B
SER
84
n
84
SER
84
B
LEU
85
n
85
LEU
85
B
HIS
86
n
86
HIS
86
B
THR
87
n
87
THR
87
B
ASP
88
n
88
ASP
88
B
ASP
89
n
89
ASP
89
B
THR
90
n
90
THR
90
B
ALA
91
n
91
ALA
91
B
ARG
92
n
92
ARG
92
B
TYR
93
n
93
TYR
93
B
TYR
94
n
94
TYR
94
B
CYS
95
n
95
CYS
95
B
ALA
96
n
96
ALA
96
B
ARG
97
n
97
ARG
97
B
GLU
98
n
98
GLU
98
B
ARG
99
n
99
ARG
99
B
ASP
100
n
100
ASP
100
B
TYR
101
n
101
TYR
101
B
ARG
102
n
102
ARG
102
B
LEU
103
n
103
LEU
103
B
ASP
104
n
104
ASP
104
B
TYR
105
n
105
TYR
105
B
TRP
106
n
106
TRP
106
B
GLY
107
n
107
GLY
107
B
GLN
108
n
108
GLN
108
B
GLY
109
n
109
GLY
109
B
THR
110
n
110
THR
110
B
THR
111
n
111
THR
111
B
LEU
112
n
112
LEU
112
B
THR
113
n
113
THR
113
B
VAL
114
n
114
VAL
114
B
SER
115
n
115
SER
115
B
SER
116
n
116
SER
116
B
LYS
1
n
1
LYS
1
C
VAL
2
n
2
VAL
2
C
PHE
3
n
3
PHE
3
C
GLY
4
n
4
GLY
4
C
ARG
5
n
5
ARG
5
C
CYS
6
n
6
CYS
6
C
GLU
7
n
7
GLU
7
C
LEU
8
n
8
LEU
8
C
ALA
9
n
9
ALA
9
C
ALA
10
n
10
ALA
10
C
ALA
11
n
11
ALA
11
C
MET
12
n
12
MET
12
C
LYS
13
n
13
LYS
13
C
ARG
14
n
14
ARG
14
C
HIS
15
n
15
HIS
15
C
GLY
16
n
16
GLY
16
C
LEU
17
n
17
LEU
17
C
ASP
18
n
18
ASP
18
C
ASN
19
n
19
ASN
19
C
TYR
20
n
20
TYR
20
C
ARG
21
n
21
ARG
21
C
GLY
22
n
22
GLY
22
C
TYR
23
n
23
TYR
23
C
SER
24
n
24
SER
24
C
LEU
25
n
25
LEU
25
C
GLY
26
n
26
GLY
26
C
ASN
27
n
27
ASN
27
C
TRP
28
n
28
TRP
28
C
VAL
29
n
29
VAL
29
C
CYS
30
n
30
CYS
30
C
ALA
31
n
31
ALA
31
C
ALA
32
n
32
ALA
32
C
LYS
33
n
33
LYS
33
C
PHE
34
n
34
PHE
34
C
GLU
35
n
35
GLU
35
C
SER
36
n
36
SER
36
C
ASN
37
n
37
ASN
37
C
PHE
38
n
38
PHE
38
C
ASN
39
n
39
ASN
39
C
THR
40
n
40
THR
40
C
GLN
41
n
41
GLN
41
C
ALA
42
n
42
ALA
42
C
THR
43
n
43
THR
43
C
ASN
44
n
44
ASN
44
C
ARG
45
n
45
ARG
45
C
ASN
46
n
46
ASN
46
C
THR
47
n
47
THR
47
C
ASP
48
n
48
ASP
48
C
GLY
49
n
49
GLY
49
C
SER
50
n
50
SER
50
C
THR
51
n
51
THR
51
C
ASP
52
n
52
ASP
52
C
TYR
53
n
53
TYR
53
C
GLY
54
n
54
GLY
54
C
ILE
55
n
55
ILE
55
C
LEU
56
n
56
LEU
56
C
GLN
57
n
57
GLN
57
C
ILE
58
n
58
ILE
58
C
ASN
59
n
59
ASN
59
C
SER
60
n
60
SER
60
C
ARG
61
n
61
ARG
61
C
TRP
62
n
62
TRP
62
C
TRP
63
n
63
TRP
63
C
CYS
64
n
64
CYS
64
C
ASN
65
n
65
ASN
65
C
ASP
66
n
66
ASP
66
C
GLY
67
n
67
GLY
67
C
ARG
68
n
68
ARG
68
C
THR
69
n
69
THR
69
C
PRO
70
n
70
PRO
70
C
GLY
71
n
71
GLY
71
C
SER
72
n
72
SER
72
C
ARG
73
n
73
ARG
73
C
ASN
74
n
74
ASN
74
C
LEU
75
n
75
LEU
75
C
CYS
76
n
76
CYS
76
C
ASN
77
n
77
ASN
77
C
ILE
78
n
78
ILE
78
C
PRO
79
n
79
PRO
79
C
CYS
80
n
80
CYS
80
C
SER
81
n
81
SER
81
C
ALA
82
n
82
ALA
82
C
LEU
83
n
83
LEU
83
C
LEU
84
n
84
LEU
84
C
SER
85
n
85
SER
85
C
SER
86
n
86
SER
86
C
ASP
87
n
87
ASP
87
C
ILE
88
n
88
ILE
88
C
THR
89
n
89
THR
89
C
ALA
90
n
90
ALA
90
C
SER
91
n
91
SER
91
C
VAL
92
n
92
VAL
92
C
ASN
93
n
93
ASN
93
C
CYS
94
n
94
CYS
94
C
ALA
95
n
95
ALA
95
C
LYS
96
n
96
LYS
96
C
LYS
97
n
97
LYS
97
C
ILE
98
n
98
ILE
98
C
VAL
99
n
99
VAL
99
C
SER
100
n
100
SER
100
C
ASP
101
n
101
ASP
101
C
GLY
102
n
102
GLY
102
C
ASN
103
n
103
ASN
103
C
GLY
104
n
104
GLY
104
C
MET
105
n
105
MET
105
C
ASN
106
n
106
ASN
106
C
ALA
107
n
107
ALA
107
C
TRP
108
n
108
TRP
108
C
VAL
109
n
109
VAL
109
C
ALA
110
n
110
ALA
110
C
TRP
111
n
111
TRP
111
C
ARG
112
n
112
ARG
112
C
ASN
113
n
113
ASN
113
C
ARG
114
n
114
ARG
114
C
CYS
115
n
115
CYS
115
C
LYS
116
n
116
LYS
116
C
GLY
117
n
117
GLY
117
C
THR
118
n
118
THR
118
C
ASP
119
n
119
ASP
119
C
VAL
120
n
120
VAL
120
C
GLN
121
n
121
GLN
121
C
ALA
122
n
122
ALA
122
C
TRP
123
n
123
TRP
123
C
ILE
124
n
124
ILE
124
C
ARG
125
n
125
ARG
125
C
GLY
126
n
126
GLY
126
C
CYS
127
n
127
CYS
127
C
ARG
128
n
128
ARG
128
C
LEU
129
n
129
LEU
129
C
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
SER
7
A
O
SER
7
A
N
THR
22
A
N
THR
22
A
N
CYS
23
A
N
CYS
23
A
O
TYR
71
A
O
TYR
71
A
N
LYS
74
A
N
LYS
74
A
O
SER
63
A
O
SER
63
A
N
LEU
11
A
N
LEU
11
A
O
LYS
103
A
O
LYS
103
A
N
LEU
104
A
N
LEU
104
A
O
GLY
84
A
O
GLY
84
A
O
GLN
89
A
O
GLN
89
A
N
ALA
34
A
N
ALA
34
A
N
GLN
37
A
N
GLN
37
A
O
GLN
45
A
O
GLN
45
A
N
TYR
49
A
N
TYR
49
A
O
THR
53
A
O
THR
53
B
O
SER
7
B
O
SER
7
B
N
THR
21
B
N
THR
21
B
N
CYS
22
B
N
CYS
22
B
O
VAL
78
B
O
VAL
78
B
N
LYS
81
B
N
LYS
81
B
O
SER
68
B
O
SER
68
B
O
ASP
58
B
O
ASP
58
B
N
MET
50
B
N
MET
50
B
O
ILE
51
B
O
ILE
51
B
N
VAL
34
B
N
VAL
34
B
N
GLN
39
B
N
GLN
39
B
O
ARG
92
B
O
ARG
92
B
O
ARG
97
B
O
ARG
97
B
N
ASP
104
B
N
ASP
104
B
O
ASP
58
B
O
ASP
58
B
N
MET
50
B
N
MET
50
B
O
ILE
51
B
O
ILE
51
B
N
VAL
34
B
N
VAL
34
B
N
GLN
39
B
N
GLN
39
B
O
ARG
92
B
O
ARG
92
B
N
TYR
93
B
N
TYR
93
B
O
THR
110
B
O
THR
110
B
O
THR
113
B
O
THR
113
B
N
VAL
12
B
N
VAL
12
C
O
ASN
44
C
O
ASN
44
C
N
ASP
52
C
N
ASP
52
C
N
TYR
53
C
N
TYR
53
C
O
ILE
58
C
O
ILE
58
1
6.08
0.80
106.30
112.38
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
35
35
35
N
1
-5.30
0.80
107.30
102.00
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
35
35
35
N
1
6.30
0.80
106.30
112.60
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
92
92
92
N
1
-5.99
0.80
107.30
101.31
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
92
92
92
N
1
6.38
0.80
106.30
112.68
B
B
B
CD1
CG
CD2
TRP
TRP
TRP
36
36
36
N
1
-5.36
0.80
107.30
101.94
B
B
B
CE2
CD2
CG
TRP
TRP
TRP
36
36
36
N
1
6.10
0.80
106.30
112.40
B
B
B
CD1
CG
CD2
TRP
TRP
TRP
47
47
47
N
1
-5.50
0.80
107.30
101.80
B
B
B
CE2
CD2
CG
TRP
TRP
TRP
47
47
47
N
1
5.61
0.90
133.90
139.51
B
B
B
CG
CD2
CE3
TRP
TRP
TRP
47
47
47
N
1
6.09
0.80
106.30
112.39
B
B
B
CD1
CG
CD2
TRP
TRP
TRP
52
52
52
N
1
-5.37
0.80
107.30
101.93
B
B
B
CE2
CD2
CG
TRP
TRP
TRP
52
52
52
N
1
-4.11
0.50
120.30
116.19
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
99
99
99
N
1
6.05
0.80
106.30
112.35
B
B
B
CD1
CG
CD2
TRP
TRP
TRP
106
106
106
N
1
-5.62
0.80
107.30
101.68
B
B
B
CE2
CD2
CG
TRP
TRP
TRP
106
106
106
N
1
6.53
0.80
106.30
112.83
C
C
C
CD1
CG
CD2
TRP
TRP
TRP
28
28
28
N
1
-6.11
0.80
107.30
101.19
C
C
C
CE2
CD2
CG
TRP
TRP
TRP
28
28
28
N
1
6.46
0.80
106.30
112.76
C
C
C
CD1
CG
CD2
TRP
TRP
TRP
62
62
62
N
1
-5.74
0.80
107.30
101.56
C
C
C
CE2
CD2
CG
TRP
TRP
TRP
62
62
62
N
1
5.88
0.80
106.30
112.18
C
C
C
CD1
CG
CD2
TRP
TRP
TRP
63
63
63
N
1
-5.36
0.80
107.30
101.94
C
C
C
CE2
CD2
CG
TRP
TRP
TRP
63
63
63
N
1
3.28
0.50
120.30
123.58
C
C
C
NE
CZ
NH1
ARG
ARG
ARG
68
68
68
N
1
3.34
0.50
120.30
123.64
C
C
C
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
1
-4.19
0.50
120.30
116.11
C
C
C
NE
CZ
NH2
ARG
ARG
ARG
73
73
73
N
1
5.41
0.80
106.30
111.71
C
C
C
CD1
CG
CD2
TRP
TRP
TRP
108
108
108
N
1
-5.38
0.80
107.30
101.92
C
C
C
CE2
CD2
CG
TRP
TRP
TRP
108
108
108
N
1
5.71
0.80
106.30
112.01
C
C
C
CD1
CG
CD2
TRP
TRP
TRP
111
111
111
N
1
-5.88
0.80
107.30
101.42
C
C
C
CE2
CD2
CG
TRP
TRP
TRP
111
111
111
N
1
6.67
0.80
106.30
112.97
C
C
C
CD1
CG
CD2
TRP
TRP
TRP
123
123
123
N
1
-5.87
0.80
107.30
101.43
C
C
C
CE2
CD2
CG
TRP
TRP
TRP
123
123
123
N
1
A
A
NE2
CD2
HIS
HIS
90
90
-0.066
0.011
1.373
1.307
N
1
C
C
NE2
CD2
HIS
HIS
15
15
-0.067
0.011
1.373
1.306
N
1
A
THR
51
65.50
-39.97
1
A
SER
93
48.79
-150.76
1
B
SER
115
-88.70
-155.17
1
C
ASP
48
169.51
155.48
1
C
ARG
68
-152.88
-19.99
0.185
0.185
1.8
1
1.8
48
3456
0
0
3408
0.012
2.7
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG LYSOZYME
BOUND WATER MOLECULES AND CONFORMATIONAL STABILIZATION HELP MEDIATE AN ANTIGEN-ANTIBODY ASSOCIATION
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
A
GLN
79
A
GLN
79
HELX_P
A
PHE
83
A
PHE
83
5
1
5
B
LEU
63
B
LEU
63
HELX_P
B
SER
65
B
SER
65
5
2
3
B
HIS
86
B
HIS
86
HELX_P
B
THR
90
B
THR
90
5
3
5
C
GLY
4
C
GLY
4
HELX_P
C
HIS
15
C
HIS
15
1
4
12
C
SER
24
C
SER
24
HELX_P
C
ASN
37
C
ASN
37
1
5
14
C
CYS
80
C
CYS
80
HELX_P
C
SER
85
C
SER
85
5
6
6
C
ILE
88
C
ILE
88
HELX_P
C
VAL
99
C
VAL
99
1
7
12
C
ASN
103
C
ASN
103
HELX_P
C
ALA
107
C
ALA
107
5
8
5
C
TRP
108
C
TRP
108
HELX_P
C
CYS
115
C
CYS
115
1
9
8
C
ASP
119
C
ASP
119
HELX_P
C
ILE
124
C
ILE
124
5
10
6
disulf
1.995
A
CYS
23
A
SG
CYS
23
1_555
A
CYS
88
A
SG
CYS
88
1_555
disulf
2.015
B
CYS
22
B
SG
CYS
22
1_555
B
CYS
95
B
SG
CYS
95
1_555
disulf
2.410
C
CYS
6
C
SG
CYS
6
1_555
C
CYS
127
C
SG
CYS
127
1_555
disulf
2.035
C
CYS
30
C
SG
CYS
30
1_555
C
CYS
115
C
SG
CYS
115
1_555
disulf
2.450
C
CYS
64
C
SG
CYS
64
1_555
C
CYS
80
C
SG
CYS
80
1_555
disulf
2.028
C
CYS
76
C
SG
CYS
76
1_555
C
CYS
94
C
SG
CYS
94
1_555
IMMUNOGLOBULIN/HYDROLASE(O-GLYCOSYL)
IMMUNOGLOBULIN/HYDROLASE(O-GLYCOSYL), IMMUNOGLOBULIN-HYDROLASE(O-GLYCOSYL) complex
A
SER
7
A
SER
7
1
A
PRO
8
A
PRO
8
-2.16
A
THR
94
A
THR
94
1
A
PRO
95
A
PRO
95
-4.58
AAB30177
GB
1
1
545862
DIELTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYKAQTLADGVPSRFSGSGSGTQYSLKINSLQP
EDFGSYYCQHFWSTPPWTFGGGTKLEIKRA
AAA69766
GB
2
1
896294
DVLMTQTPLTLSVTIGQPASISCKSSQSLLHTDGKTYLIWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKI
SRVEAEDLGVYYCWQGTHFPQTFGGGTKLEIKRADAAPGSTSGSGKSSEGKGQVQLQESGPGLVAPSQSLSITCTVSGFS
LTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDYRLDYWGQ
GTTVTVSSTKTTPPSVYPAAAHHHHHHGAAEQKLISEEDLNGAA
LYSC_CHICK
UNP
3
1
P00698
MRSLLILVLCFLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRW
WCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
1
108
1VFB
1
107
545862
A
1
1
107
133
248
1VFB
1
116
896294
B
2
1
116
19
147
1VFB
1
129
P00698
C
3
1
129
1
GLU
CONFLICT
VAL
3
1VFB
A
545862
GB
3
3
1
LYS
CONFLICT
TYR
50
1VFB
A
545862
GB
50
50
1
ALA
CONFLICT
THR
51
1VFB
A
545862
GB
51
51
1
GLN
CONFLICT
THR
52
1VFB
A
545862
GB
52
52
1
PRO
DELETION
1VFB
A
545862
GB
95
1
TRP
CONFLICT
ARG
96
1VFB
A
545862
GB
97
96
2
VAL
CONFLICT
LEU
112
1VFB
B
896294
GB
244
112
4
6
4
5
6
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
LEU
4
A
LEU
4
A
SER
7
A
SER
7
A
VAL
19
A
VAL
19
A
ALA
25
A
ALA
25
A
GLN
70
A
GLN
70
A
ILE
75
A
ILE
75
A
PHE
62
A
PHE
62
A
SER
67
A
SER
67
A
SER
10
A
SER
10
A
ALA
13
A
ALA
13
A
THR
102
A
THR
102
A
ILE
106
A
ILE
106
A
GLY
84
A
GLY
84
A
HIS
90
A
HIS
90
A
LEU
33
A
LEU
33
A
GLN
38
A
GLN
38
A
GLN
45
A
GLN
45
A
TYR
49
A
TYR
49
A
THR
53
A
THR
53
A
LEU
54
A
LEU
54
B
GLN
3
B
GLN
3
B
SER
7
B
SER
7
B
LEU
18
B
LEU
18
B
SER
25
B
SER
25
B
GLN
77
B
GLN
77
B
MET
82
B
MET
82
B
LEU
67
B
LEU
67
B
ASP
72
B
ASP
72
B
THR
57
B
THR
57
B
TYR
59
B
TYR
59
B
GLU
46
B
GLU
46
B
ILE
51
B
ILE
51
B
GLY
33
B
GLY
33
B
GLN
39
B
GLN
39
B
ALA
91
B
ALA
91
B
GLU
98
B
GLU
98
B
LEU
103
B
LEU
103
B
TRP
106
B
TRP
106
B
THR
57
B
THR
57
B
TYR
59
B
TYR
59
B
GLU
46
B
GLU
46
B
ILE
51
B
ILE
51
B
GLY
33
B
GLY
33
B
GLN
39
B
GLN
39
B
ALA
91
B
ALA
91
B
GLU
98
B
GLU
98
B
THR
110
B
THR
110
B
VAL
114
B
VAL
114
B
LEU
11
B
LEU
11
B
VAL
12
B
VAL
12
C
THR
43
C
THR
43
C
ARG
45
C
ARG
45
C
THR
51
C
THR
51
C
TYR
53
C
TYR
53
C
ILE
58
C
ILE
58
C
ASN
59
C
ASN
59
5
C 1 2 1