0.024088 0.000000 0.000000 0.000000 0.021901 0.000000 0.000000 0.000000 0.010243 0.00000 0.00000 0.00000 Yao, M. Morita, H. Okada, A. Tanaka, I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 41.5 45.7 97.6 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N O N 241 N C N 242 N C N 243 N SE N 244 N C N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 N C Y 261 N C Y 262 N C Y 263 N C Y 264 N C Y 265 N C Y 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C N 284 N C N 285 N C N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C N 301 N O N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N N N 311 S C N 312 N C N 313 N O N 314 R C N 315 N O N 316 N C N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N N Y 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N C N 365 N O N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N N N 379 S C N 380 N C N 381 N O N 382 N C N 383 N C N 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing Y 254 N doub Y 255 N sing Y 256 N sing N 257 N sing Y 258 N doub N 259 N sing Y 260 N doub N 261 N sing Y 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing Y 323 N doub Y 324 N sing Y 325 N sing N 326 N sing Y 327 N doub Y 328 N sing Y 329 N sing N 330 N sing Y 331 N sing Y 332 N doub N 333 N sing Y 334 N doub N 335 N sing Y 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing Y 351 N doub Y 352 N sing Y 353 N sing N 354 N sing Y 355 N doub N 356 N sing Y 357 N doub N 358 N sing Y 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing DK ACTA CRYSTALLOGR.,SECT.F 1744-3091 62 1196 1200 10.1107/S1744309106046616 17142895 The structure of Pyrococcus horikoshii 2'-5' RNA ligase at 1.94 A resolution reveals a possible open form with a wider active-site cleft 2006 10.2210/pdb1vgj/pdb pdb_00001vgj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2004-03-23 ADSC SINGLE WAVELENGTH M x-ray 1 0.97950 1.0 BL44B2 SPring-8 0.97950 SYNCHROTRON SPRING-8 BEAMLINE BL44B2 21271.248 Hypothetical protein PH0099 1 man polymer 18.015 water 41 nat water 2'-5' RNA ligase no yes (MSE)RAFIAIDVNESVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFLGEITEEQAEEIKNILKKIAEKYKKHEVKVK GIGVFPNPNYIRVIWAGIENDEIIRE(MSE)AREIEDELAKLGFKKEGNFVAHITLGRVKFVKDKLGLT(MSE)KLKELA NEDFGSFVVDAIELKKSTLTPKGPIYETLARFELSE MRAFIAIDVNESVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFLGEITEEQAEEIKNILKKIAEKYKKHEVKVKGIGV FPNPNYIRVIWAGIENDEIIREMAREIEDELAKLGFKKEGNFVAHITLGRVKFVKDKLGLTMKLKELANEDFGSFVVDAI ELKKSTLTPKGPIYETLARFELSE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pyrococcus Escherichia sample PH0099 53953 Pyrococcus horikoshii 562 Escherichia coli B834(DE3) Plasmid pET-26b 1 2.19 43.5 VAPOR DIFFUSION, HANGING DROP 4.6 Ammonium acetate, Sodium acetate, PEG4000, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description Data collection 1 0 2005-06-07 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-10-25 1 4 2023-11-15 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 Y PDBJ Y PDBJ 2004-04-27 REL REL HOH water 1IUH PDB entry 1iuh PDB experimental model HOH 201 2 HOH HOH 201 A HOH 202 2 HOH HOH 202 A HOH 203 2 HOH HOH 203 A HOH 204 2 HOH HOH 204 A HOH 205 2 HOH HOH 205 A HOH 206 2 HOH HOH 206 A HOH 207 2 HOH HOH 207 A HOH 208 2 HOH HOH 208 A HOH 209 2 HOH HOH 209 A HOH 210 2 HOH HOH 210 A HOH 211 2 HOH HOH 211 A HOH 212 2 HOH HOH 212 A HOH 213 2 HOH HOH 213 A HOH 214 2 HOH HOH 214 A HOH 215 2 HOH HOH 215 A HOH 216 2 HOH HOH 216 A HOH 217 2 HOH HOH 217 A HOH 218 2 HOH HOH 218 A HOH 219 2 HOH HOH 219 A HOH 220 2 HOH HOH 220 A HOH 221 2 HOH HOH 221 A HOH 222 2 HOH HOH 222 A HOH 223 2 HOH HOH 223 A HOH 224 2 HOH HOH 224 A HOH 225 2 HOH HOH 225 A HOH 226 2 HOH HOH 226 A HOH 227 2 HOH HOH 227 A HOH 228 2 HOH HOH 228 A HOH 229 2 HOH HOH 229 A HOH 230 2 HOH HOH 230 A HOH 231 2 HOH HOH 231 A HOH 232 2 HOH HOH 232 A HOH 233 2 HOH HOH 233 A HOH 234 2 HOH HOH 234 A HOH 235 2 HOH HOH 235 A HOH 236 2 HOH HOH 236 A HOH 237 2 HOH HOH 237 A HOH 238 2 HOH HOH 238 A HOH 239 2 HOH HOH 239 A HOH 240 2 HOH HOH 240 A HOH 241 2 HOH HOH 241 A MSE 1 n 1 MSE 1 A ARG 2 n 2 ARG 2 A ALA 3 n 3 ALA 3 A PHE 4 n 4 PHE 4 A ILE 5 n 5 ILE 5 A ALA 6 n 6 ALA 6 A ILE 7 n 7 ILE 7 A ASP 8 n 8 ASP 8 A VAL 9 n 9 VAL 9 A ASN 10 n 10 ASN 10 A GLU 11 n 11 GLU 11 A SER 12 n 12 SER 12 A VAL 13 n 13 VAL 13 A ARG 14 n 14 ARG 14 A ASP 15 n 15 ASP 15 A SER 16 n 16 SER 16 A LEU 17 n 17 LEU 17 A VAL 18 n 18 VAL 18 A ARG 19 n 19 ARG 19 A ALA 20 n 20 ALA 20 A GLN 21 n 21 GLN 21 A ASP 22 n 22 ASP 22 A TYR 23 n 23 TYR 23 A ILE 24 n 24 ILE 24 A GLY 25 n 25 GLY 25 A SER 26 n 26 SER 26 A LYS 27 n 27 LYS 27 A GLU 28 n 28 GLU 28 A ALA 29 n 29 ALA 29 A LYS 30 n 30 LYS 30 A ILE 31 n 31 ILE 31 A LYS 32 n 32 LYS 32 A PHE 33 n 33 PHE 33 A VAL 34 n 34 VAL 34 A GLU 35 n 35 GLU 35 A ARG 36 n 36 ARG 36 A GLU 37 n 37 GLU 37 A ASN 38 n 38 ASN 38 A LEU 39 n 39 LEU 39 A HIS 40 n 40 HIS 40 A ILE 41 n 41 ILE 41 A THR 42 n 42 THR 42 A LEU 43 n 43 LEU 43 A LYS 44 n 44 LYS 44 A PHE 45 n 45 PHE 45 A LEU 46 n 46 LEU 46 A GLY 47 n 47 GLY 47 A GLU 48 n 48 GLU 48 A ILE 49 n 49 ILE 49 A THR 50 n 50 THR 50 A GLU 51 n 51 GLU 51 A GLU 52 n 52 GLU 52 A GLN 53 n 53 GLN 53 A ALA 54 n 54 ALA 54 A GLU 55 n 55 GLU 55 A GLU 56 n 56 GLU 56 A ILE 57 n 57 ILE 57 A LYS 58 n 58 LYS 58 A ASN 59 n 59 ASN 59 A ILE 60 n 60 ILE 60 A LEU 61 n 61 LEU 61 A LYS 62 n 62 LYS 62 A LYS 63 n 63 LYS 63 A ILE 64 n 64 ILE 64 A ALA 65 n 65 ALA 65 A GLU 66 n 66 GLU 66 A LYS 67 n 67 LYS 67 A TYR 68 n 68 TYR 68 A LYS 69 n 69 LYS 69 A LYS 70 n 70 LYS 70 A HIS 71 n 71 HIS 71 A GLU 72 n 72 GLU 72 A VAL 73 n 73 VAL 73 A LYS 74 n 74 LYS 74 A VAL 75 n 75 VAL 75 A LYS 76 n 76 LYS 76 A GLY 77 n 77 GLY 77 A ILE 78 n 78 ILE 78 A GLY 79 n 79 GLY 79 A VAL 80 n 80 VAL 80 A PHE 81 n 81 PHE 81 A PRO 82 n 82 PRO 82 A ASN 83 n 83 ASN 83 A PRO 84 n 84 PRO 84 A ASN 85 n 85 ASN 85 A TYR 86 n 86 TYR 86 A ILE 87 n 87 ILE 87 A ARG 88 n 88 ARG 88 A VAL 89 n 89 VAL 89 A ILE 90 n 90 ILE 90 A TRP 91 n 91 TRP 91 A ALA 92 n 92 ALA 92 A GLY 93 n 93 GLY 93 A ILE 94 n 94 ILE 94 A GLU 95 n 95 GLU 95 A ASN 96 n 96 ASN 96 A ASP 97 n 97 ASP 97 A GLU 98 n 98 GLU 98 A ILE 99 n 99 ILE 99 A ILE 100 n 100 ILE 100 A ARG 101 n 101 ARG 101 A GLU 102 n 102 GLU 102 A MSE 103 n 103 MSE 103 A ALA 104 n 104 ALA 104 A ARG 105 n 105 ARG 105 A GLU 106 n 106 GLU 106 A ILE 107 n 107 ILE 107 A GLU 108 n 108 GLU 108 A ASP 109 n 109 ASP 109 A GLU 110 n 110 GLU 110 A LEU 111 n 111 LEU 111 A ALA 112 n 112 ALA 112 A LYS 113 n 113 LYS 113 A LEU 114 n 114 LEU 114 A GLY 115 n 115 GLY 115 A PHE 116 n 116 PHE 116 A LYS 117 n 117 LYS 117 A LYS 118 n 118 LYS 118 A GLU 119 n 119 GLU 119 A GLY 120 n 120 GLY 120 A ASN 121 n 121 ASN 121 A PHE 122 n 122 PHE 122 A VAL 123 n 123 VAL 123 A ALA 124 n 124 ALA 124 A HIS 125 n 125 HIS 125 A ILE 126 n 126 ILE 126 A THR 127 n 127 THR 127 A LEU 128 n 128 LEU 128 A GLY 129 n 129 GLY 129 A ARG 130 n 130 ARG 130 A VAL 131 n 131 VAL 131 A LYS 132 n 132 LYS 132 A PHE 133 n 133 PHE 133 A VAL 134 n 134 VAL 134 A LYS 135 n 135 LYS 135 A ASP 136 n 136 ASP 136 A LYS 137 n 137 LYS 137 A LEU 138 n 138 LEU 138 A GLY 139 n 139 GLY 139 A LEU 140 n 140 LEU 140 A THR 141 n 141 THR 141 A MSE 142 n 142 MSE 142 A LYS 143 n 143 LYS 143 A LEU 144 n 144 LEU 144 A LYS 145 n 145 LYS 145 A GLU 146 n 146 GLU 146 A LEU 147 n 147 LEU 147 A ALA 148 n 148 ALA 148 A ASN 149 n 149 ASN 149 A GLU 150 n 150 GLU 150 A ASP 151 n 151 ASP 151 A PHE 152 n 152 PHE 152 A GLY 153 n 153 GLY 153 A SER 154 n 154 SER 154 A PHE 155 n 155 PHE 155 A VAL 156 n 156 VAL 156 A VAL 157 n 157 VAL 157 A ASP 158 n 158 ASP 158 A ALA 159 n 159 ALA 159 A ILE 160 n 160 ILE 160 A GLU 161 n 161 GLU 161 A LEU 162 n 162 LEU 162 A LYS 163 n 163 LYS 163 A LYS 164 n 164 LYS 164 A SER 165 n 165 SER 165 A THR 166 n 166 THR 166 A LEU 167 n 167 LEU 167 A THR 168 n 168 THR 168 A PRO 169 n 169 PRO 169 A LYS 170 n 170 LYS 170 A GLY 171 n 171 GLY 171 A PRO 172 n 172 PRO 172 A ILE 173 n 173 ILE 173 A TYR 174 n 174 TYR 174 A GLU 175 n 175 GLU 175 A THR 176 n 176 THR 176 A LEU 177 n 177 LEU 177 A ALA 178 n 178 ALA 178 A ARG 179 n 179 ARG 179 A PHE 180 n 180 PHE 180 A GLU 181 n 181 GLU 181 A LEU 182 n 182 LEU 182 A SER 183 n 183 SER 183 A GLU 184 n 184 GLU 184 A author_defined_assembly 1 monomeric A MSE 1 SELENOMETHIONINE A MSE 1 MET A MSE 103 SELENOMETHIONINE A MSE 103 MET A MSE 142 SELENOMETHIONINE A MSE 142 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 43 A O LEU 43 A N ILE 5 A N ILE 5 A N PHE 4 A N PHE 4 A O LYS 163 A O LYS 163 A N ILE 160 A N ILE 160 A O PHE 180 A O PHE 180 A N LYS 32 A N LYS 32 A O ARG 130 A O ARG 130 A O LEU 128 A O LEU 128 A N ILE 90 A N ILE 90 A O GLU 95 A O GLU 95 A N LYS 74 A N LYS 74 A N HIS 71 A N HIS 71 A O VAL 157 A O VAL 157 1 -3.51 0.50 120.30 116.79 A A A NE CZ NH2 ARG ARG ARG 36 36 36 N 1 -13.72 2.20 98.90 85.18 A A A CG SE CE MSE MSE MSE 103 103 103 N 1 A A CA CB ALA ALA 20 20 0.144 0.021 1.520 1.664 N 1 A A CB CG2 VAL VAL 75 75 0.130 0.021 1.524 1.654 N 1 A TYR 86 53.61 87.78 33.802 1.29 0.00 0.00 -0.99 0.00 -0.30 0.942 0.915 CNS also was used for the refinement 0.26487 0.21047 0.21584 1.94 10.00 1414 14194 12780 10.0 100.00 4.068 0.120 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT 0.203 0.184 0.80 0.80 1.40 PDB entry 1iuh Engh & Huber BABINET MODEL WITH MASK 1.94 10.00 41 1529 0 0 1488 0.027 0.022 1510 1.966 1.976 2022 5.898 5.000 183 0.156 0.200 228 0.010 0.020 1095 0.237 0.200 625 0.212 0.200 54 0.245 0.200 45 0.143 0.200 5 1.602 1.500 913 2.848 2.000 1475 4.291 3.000 597 7.231 4.500 547 0.289 0.219 1.988 112 891 1003 20 50.2 1.94 50 1VGJ 14330 14330 -3.0 0.047 0.047 1 16.5 7.0 99.9 0.384 1.94 2.01 1394 0.384 6.6 99.6 refinement REFMAC 5.1.19 data reduction DENZO data scaling SCALEPACK phasing AMoRE Crystal structure of 2'-5' RNA ligase from Pyrococcus horikoshii 1 N N 2 N N Biological unit is a monomer in the asymmetric unit. A ASN 10 A ASN 10 HELX_P A GLY 25 A GLY 25 1 1 16 A GLU 35 A GLU 35 HELX_P A ASN 38 A ASN 38 5 2 4 A THR 50 A THR 50 HELX_P A GLU 66 A GLU 66 1 3 17 A ASP 97 A ASP 97 HELX_P A LYS 113 A LYS 113 1 4 17 A ASP 136 A ASP 136 HELX_P A LEU 147 A LEU 147 1 5 12 covale 1.341 both A MSE 1 A C MSE 1 1_555 A ARG 2 A N ARG 2 1_555 covale 1.354 both A GLU 102 A C GLU 102 1_555 A MSE 103 A N MSE 103 1_555 covale 1.330 both A MSE 103 A C MSE 103 1_555 A ALA 104 A N ALA 104 1_555 covale 1.326 both A THR 141 A C THR 141 1_555 A MSE 142 A N MSE 142 1_555 covale 1.327 both A MSE 142 A C MSE 142 1_555 A LYS 143 A N LYS 143 1_555 LIGASE Alpha+Beta, LigT-like, STRUCTURAL GENOMICS, LIGASE A PHE 81 A PHE 81 1 A PRO 82 A PRO 82 -1.44 Y099_PYRHO UNP 1 1 O57823 MRAFIAIDVNESVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFLGEITEEQAEEIKNILKKIAEKYKKHEVKVKGIGV FPNPNYIRVIWAGIENDEIIREMAREIEDELAKLGFKKEGNFVAHITLGRVKFVKDKLGLTMKLKELANEDFGSFVVDAI ELKKSTLTPKGPIYETLARFELSE 1 184 1VGJ 1 184 O57823 A 1 1 184 1 MET modified residue MSE 1 1VGJ A O57823 UNP 1 1 1 MET modified residue MSE 103 1VGJ A O57823 UNP 103 103 1 MET modified residue MSE 142 1VGJ A O57823 UNP 142 142 4 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A HIS 40 A HIS 40 A GLY 47 A GLY 47 A ARG 2 A ARG 2 A ASP 8 A ASP 8 A ALA 159 A ALA 159 A THR 168 A THR 168 A GLY 171 A GLY 171 A GLU 181 A GLU 181 A ALA 29 A ALA 29 A PHE 33 A PHE 33 A HIS 125 A HIS 125 A VAL 134 A VAL 134 A ILE 87 A ILE 87 A GLU 95 A GLU 95 A HIS 71 A HIS 71 A PRO 82 A PRO 82 A ASP 151 A ASP 151 A VAL 157 A VAL 157 19 P 21 21 21