0.018580
0.000000
0.000000
0.000000
0.007997
0.000000
0.000000
0.000000
0.012041
0.00000
0.00000
0.00000
Structural GenomiX
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
53.822
125.050
83.050
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Proteins
PSFGEY
0867
0887-3585
60
787
796
10.1002/prot.20541
16021622
Structural analysis of a set of proteins resulting from a bacterial genomics project
2005
10.2210/pdb1vh9/pdb
pdb_00001vh9
1
CCD
MARRESEARCH
SINGLE WAVELENGTH
x-ray
1
0.9795
1.0
32-ID
APS
0.9795
SYNCHROTRON
APS BEAMLINE 32-ID
16348.525
Hypothetical protein ybdB
2
man
polymer
18.015
water
126
nat
water
p15
no
no
MSLIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQ
CVVGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLGEGGSHHHHHH
MSLIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQ
CVVGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLGEGGSHHHHHH
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
YBDB, B0597, C0684
562
Escherichia coli
562
Escherichia coli
1
2.14
42.44
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
1
0
2003-12-30
1
1
2008-04-26
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2003-12-01
REL
REL
HOH
water
HOH
2
2
HOH
HOH
148
A
HOH
5
2
HOH
HOH
149
A
HOH
10
2
HOH
HOH
150
A
HOH
13
2
HOH
HOH
151
A
HOH
15
2
HOH
HOH
152
A
HOH
16
2
HOH
HOH
153
A
HOH
17
2
HOH
HOH
154
A
HOH
21
2
HOH
HOH
155
A
HOH
22
2
HOH
HOH
156
A
HOH
23
2
HOH
HOH
157
A
HOH
26
2
HOH
HOH
158
A
HOH
28
2
HOH
HOH
159
A
HOH
29
2
HOH
HOH
160
A
HOH
32
2
HOH
HOH
161
A
HOH
34
2
HOH
HOH
162
A
HOH
35
2
HOH
HOH
163
A
HOH
36
2
HOH
HOH
164
A
HOH
37
2
HOH
HOH
165
A
HOH
38
2
HOH
HOH
166
A
HOH
41
2
HOH
HOH
167
A
HOH
42
2
HOH
HOH
168
A
HOH
49
2
HOH
HOH
169
A
HOH
58
2
HOH
HOH
170
A
HOH
62
2
HOH
HOH
171
A
HOH
64
2
HOH
HOH
172
A
HOH
65
2
HOH
HOH
173
A
HOH
73
2
HOH
HOH
174
A
HOH
74
2
HOH
HOH
175
A
HOH
75
2
HOH
HOH
176
A
HOH
78
2
HOH
HOH
177
A
HOH
80
2
HOH
HOH
178
A
HOH
83
2
HOH
HOH
179
A
HOH
84
2
HOH
HOH
180
A
HOH
86
2
HOH
HOH
181
A
HOH
88
2
HOH
HOH
182
A
HOH
90
2
HOH
HOH
183
A
HOH
91
2
HOH
HOH
184
A
HOH
92
2
HOH
HOH
185
A
HOH
94
2
HOH
HOH
186
A
HOH
99
2
HOH
HOH
187
A
HOH
100
2
HOH
HOH
188
A
HOH
102
2
HOH
HOH
189
A
HOH
103
2
HOH
HOH
190
A
HOH
104
2
HOH
HOH
191
A
HOH
106
2
HOH
HOH
192
A
HOH
108
2
HOH
HOH
193
A
HOH
109
2
HOH
HOH
194
A
HOH
110
2
HOH
HOH
195
A
HOH
113
2
HOH
HOH
196
A
HOH
119
2
HOH
HOH
197
A
HOH
120
2
HOH
HOH
198
A
HOH
121
2
HOH
HOH
199
A
HOH
125
2
HOH
HOH
200
A
HOH
1
2
HOH
HOH
148
B
HOH
3
2
HOH
HOH
149
B
HOH
4
2
HOH
HOH
150
B
HOH
6
2
HOH
HOH
151
B
HOH
7
2
HOH
HOH
152
B
HOH
8
2
HOH
HOH
153
B
HOH
9
2
HOH
HOH
154
B
HOH
11
2
HOH
HOH
155
B
HOH
12
2
HOH
HOH
156
B
HOH
14
2
HOH
HOH
157
B
HOH
18
2
HOH
HOH
158
B
HOH
19
2
HOH
HOH
159
B
HOH
20
2
HOH
HOH
160
B
HOH
24
2
HOH
HOH
161
B
HOH
25
2
HOH
HOH
162
B
HOH
27
2
HOH
HOH
163
B
HOH
30
2
HOH
HOH
164
B
HOH
31
2
HOH
HOH
165
B
HOH
33
2
HOH
HOH
166
B
HOH
39
2
HOH
HOH
167
B
HOH
40
2
HOH
HOH
168
B
HOH
43
2
HOH
HOH
169
B
HOH
44
2
HOH
HOH
170
B
HOH
45
2
HOH
HOH
171
B
HOH
46
2
HOH
HOH
172
B
HOH
47
2
HOH
HOH
173
B
HOH
48
2
HOH
HOH
174
B
HOH
50
2
HOH
HOH
175
B
HOH
51
2
HOH
HOH
176
B
HOH
52
2
HOH
HOH
177
B
HOH
53
2
HOH
HOH
178
B
HOH
54
2
HOH
HOH
179
B
HOH
55
2
HOH
HOH
180
B
HOH
56
2
HOH
HOH
181
B
HOH
57
2
HOH
HOH
182
B
HOH
59
2
HOH
HOH
183
B
HOH
60
2
HOH
HOH
184
B
HOH
61
2
HOH
HOH
185
B
HOH
63
2
HOH
HOH
186
B
HOH
66
2
HOH
HOH
187
B
HOH
67
2
HOH
HOH
188
B
HOH
68
2
HOH
HOH
189
B
HOH
69
2
HOH
HOH
190
B
HOH
70
2
HOH
HOH
191
B
HOH
71
2
HOH
HOH
192
B
HOH
72
2
HOH
HOH
193
B
HOH
76
2
HOH
HOH
194
B
HOH
77
2
HOH
HOH
195
B
HOH
79
2
HOH
HOH
196
B
HOH
81
2
HOH
HOH
197
B
HOH
82
2
HOH
HOH
198
B
HOH
85
2
HOH
HOH
199
B
HOH
87
2
HOH
HOH
200
B
HOH
89
2
HOH
HOH
201
B
HOH
93
2
HOH
HOH
202
B
HOH
95
2
HOH
HOH
203
B
HOH
96
2
HOH
HOH
204
B
HOH
97
2
HOH
HOH
205
B
HOH
98
2
HOH
HOH
206
B
HOH
101
2
HOH
HOH
207
B
HOH
105
2
HOH
HOH
208
B
HOH
107
2
HOH
HOH
209
B
HOH
111
2
HOH
HOH
210
B
HOH
112
2
HOH
HOH
211
B
HOH
114
2
HOH
HOH
212
B
HOH
115
2
HOH
HOH
213
B
HOH
116
2
HOH
HOH
214
B
HOH
117
2
HOH
HOH
215
B
HOH
118
2
HOH
HOH
216
B
HOH
122
2
HOH
HOH
217
B
HOH
123
2
HOH
HOH
218
B
HOH
124
2
HOH
HOH
219
B
HOH
126
2
HOH
HOH
220
B
n
1
-1
A
SER
0
n
2
SER
0
A
LEU
1
n
3
LEU
1
A
ILE
2
n
4
ILE
2
A
TRP
3
n
5
TRP
3
A
LYS
4
n
6
LYS
4
A
ARG
5
n
7
ARG
5
A
HIS
6
n
8
HIS
6
A
LEU
7
n
9
LEU
7
A
THR
8
n
10
THR
8
A
LEU
9
n
11
LEU
9
A
ASP
10
n
12
ASP
10
A
GLU
11
n
13
GLU
11
A
LEU
12
n
14
LEU
12
A
ASN
13
n
15
ASN
13
A
ALA
14
n
16
ALA
14
A
THR
15
n
17
THR
15
A
SER
16
n
18
SER
16
A
ASP
17
n
19
ASP
17
A
ASN
18
n
20
ASN
18
A
THR
19
n
21
THR
19
A
MET
20
n
22
MET
20
A
VAL
21
n
23
VAL
21
A
ALA
22
n
24
ALA
22
A
HIS
23
n
25
HIS
23
A
LEU
24
n
26
LEU
24
A
GLY
25
n
27
GLY
25
A
ILE
26
n
28
ILE
26
A
VAL
27
n
29
VAL
27
A
TYR
28
n
30
TYR
28
A
THR
29
n
31
THR
29
A
ARG
30
n
32
ARG
30
A
LEU
31
n
33
LEU
31
A
GLY
32
n
34
GLY
32
A
ASP
33
n
35
ASP
33
A
ASP
34
n
36
ASP
34
A
VAL
35
n
37
VAL
35
A
LEU
36
n
38
LEU
36
A
GLU
37
n
39
GLU
37
A
ALA
38
n
40
ALA
38
A
GLU
39
n
41
GLU
39
A
MET
40
n
42
MET
40
A
PRO
41
n
43
PRO
41
A
VAL
42
n
44
VAL
42
A
ASP
43
n
45
ASP
43
A
THR
44
n
46
THR
44
A
ARG
45
n
47
ARG
45
A
THR
46
n
48
THR
46
A
HIS
47
n
49
HIS
47
A
GLN
48
n
50
GLN
48
A
PRO
49
n
51
PRO
49
A
PHE
50
n
52
PHE
50
A
GLY
51
n
53
GLY
51
A
LEU
52
n
54
LEU
52
A
LEU
53
n
55
LEU
53
A
HIS
54
n
56
HIS
54
A
GLY
55
n
57
GLY
55
A
GLY
56
n
58
GLY
56
A
ALA
57
n
59
ALA
57
A
SER
58
n
60
SER
58
A
ALA
59
n
61
ALA
59
A
ALA
60
n
62
ALA
60
A
LEU
61
n
63
LEU
61
A
ALA
62
n
64
ALA
62
A
GLU
63
n
65
GLU
63
A
THR
64
n
66
THR
64
A
LEU
65
n
67
LEU
65
A
GLY
66
n
68
GLY
66
A
SER
67
n
69
SER
67
A
MET
68
n
70
MET
68
A
ALA
69
n
71
ALA
69
A
GLY
70
n
72
GLY
70
A
PHE
71
n
73
PHE
71
A
MET
72
n
74
MET
72
A
MET
73
n
75
MET
73
A
THR
74
n
76
THR
74
A
ARG
75
n
77
ARG
75
A
ASP
76
n
78
ASP
76
A
GLY
77
n
79
GLY
77
A
GLN
78
n
80
GLN
78
A
CYS
79
n
81
CYS
79
A
VAL
80
n
82
VAL
80
A
VAL
81
n
83
VAL
81
A
GLY
82
n
84
GLY
82
A
THR
83
n
85
THR
83
A
GLU
84
n
86
GLU
84
A
LEU
85
n
87
LEU
85
A
ASN
86
n
88
ASN
86
A
ALA
87
n
89
ALA
87
A
THR
88
n
90
THR
88
A
HIS
89
n
91
HIS
89
A
HIS
90
n
92
HIS
90
A
ARG
91
n
93
ARG
91
A
PRO
92
n
94
PRO
92
A
VAL
93
n
95
VAL
93
A
SER
94
n
96
SER
94
A
GLU
95
n
97
GLU
95
A
GLY
96
n
98
GLY
96
A
LYS
97
n
99
LYS
97
A
VAL
98
n
100
VAL
98
A
ARG
99
n
101
ARG
99
A
GLY
100
n
102
GLY
100
A
VAL
101
n
103
VAL
101
A
CYS
102
n
104
CYS
102
A
GLN
103
n
105
GLN
103
A
PRO
104
n
106
PRO
104
A
LEU
105
n
107
LEU
105
A
HIS
106
n
108
HIS
106
A
LEU
107
n
109
LEU
107
A
GLY
108
n
110
GLY
108
A
ARG
109
n
111
ARG
109
A
GLN
110
n
112
GLN
110
A
ASN
111
n
113
ASN
111
A
GLN
112
n
114
GLN
112
A
SER
113
n
115
SER
113
A
TRP
114
n
116
TRP
114
A
GLU
115
n
117
GLU
115
A
ILE
116
n
118
ILE
116
A
VAL
117
n
119
VAL
117
A
VAL
118
n
120
VAL
118
A
PHE
119
n
121
PHE
119
A
ASP
120
n
122
ASP
120
A
GLU
121
n
123
GLU
121
A
GLN
122
n
124
GLN
122
A
GLY
123
n
125
GLY
123
A
ARG
124
n
126
ARG
124
A
ARG
125
n
127
ARG
125
A
CYS
126
n
128
CYS
126
A
CYS
127
n
129
CYS
127
A
THR
128
n
130
THR
128
A
CYS
129
n
131
CYS
129
A
ARG
130
n
132
ARG
130
A
LEU
131
n
133
LEU
131
A
GLY
132
n
134
GLY
132
A
THR
133
n
135
THR
133
A
ALA
134
n
136
ALA
134
A
VAL
135
n
137
VAL
135
A
LEU
136
n
138
LEU
136
A
GLY
137
n
139
GLY
137
A
n
140
138
A
n
141
139
A
n
142
140
A
n
143
141
A
n
144
142
A
n
145
143
A
n
146
144
A
n
147
145
A
n
148
146
A
n
149
147
A
n
1
-1
B
SER
0
n
2
SER
0
B
LEU
1
n
3
LEU
1
B
ILE
2
n
4
ILE
2
B
TRP
3
n
5
TRP
3
B
LYS
4
n
6
LYS
4
B
ARG
5
n
7
ARG
5
B
HIS
6
n
8
HIS
6
B
LEU
7
n
9
LEU
7
B
THR
8
n
10
THR
8
B
LEU
9
n
11
LEU
9
B
ASP
10
n
12
ASP
10
B
GLU
11
n
13
GLU
11
B
LEU
12
n
14
LEU
12
B
ASN
13
n
15
ASN
13
B
ALA
14
n
16
ALA
14
B
THR
15
n
17
THR
15
B
SER
16
n
18
SER
16
B
ASP
17
n
19
ASP
17
B
ASN
18
n
20
ASN
18
B
THR
19
n
21
THR
19
B
MET
20
n
22
MET
20
B
VAL
21
n
23
VAL
21
B
ALA
22
n
24
ALA
22
B
HIS
23
n
25
HIS
23
B
LEU
24
n
26
LEU
24
B
GLY
25
n
27
GLY
25
B
ILE
26
n
28
ILE
26
B
VAL
27
n
29
VAL
27
B
TYR
28
n
30
TYR
28
B
THR
29
n
31
THR
29
B
ARG
30
n
32
ARG
30
B
LEU
31
n
33
LEU
31
B
GLY
32
n
34
GLY
32
B
ASP
33
n
35
ASP
33
B
ASP
34
n
36
ASP
34
B
VAL
35
n
37
VAL
35
B
LEU
36
n
38
LEU
36
B
GLU
37
n
39
GLU
37
B
ALA
38
n
40
ALA
38
B
GLU
39
n
41
GLU
39
B
MET
40
n
42
MET
40
B
PRO
41
n
43
PRO
41
B
VAL
42
n
44
VAL
42
B
ASP
43
n
45
ASP
43
B
THR
44
n
46
THR
44
B
ARG
45
n
47
ARG
45
B
THR
46
n
48
THR
46
B
HIS
47
n
49
HIS
47
B
GLN
48
n
50
GLN
48
B
PRO
49
n
51
PRO
49
B
PHE
50
n
52
PHE
50
B
GLY
51
n
53
GLY
51
B
LEU
52
n
54
LEU
52
B
LEU
53
n
55
LEU
53
B
HIS
54
n
56
HIS
54
B
GLY
55
n
57
GLY
55
B
GLY
56
n
58
GLY
56
B
ALA
57
n
59
ALA
57
B
SER
58
n
60
SER
58
B
ALA
59
n
61
ALA
59
B
ALA
60
n
62
ALA
60
B
LEU
61
n
63
LEU
61
B
ALA
62
n
64
ALA
62
B
GLU
63
n
65
GLU
63
B
THR
64
n
66
THR
64
B
LEU
65
n
67
LEU
65
B
GLY
66
n
68
GLY
66
B
SER
67
n
69
SER
67
B
MET
68
n
70
MET
68
B
ALA
69
n
71
ALA
69
B
GLY
70
n
72
GLY
70
B
PHE
71
n
73
PHE
71
B
MET
72
n
74
MET
72
B
MET
73
n
75
MET
73
B
THR
74
n
76
THR
74
B
ARG
75
n
77
ARG
75
B
ASP
76
n
78
ASP
76
B
GLY
77
n
79
GLY
77
B
GLN
78
n
80
GLN
78
B
CYS
79
n
81
CYS
79
B
VAL
80
n
82
VAL
80
B
VAL
81
n
83
VAL
81
B
GLY
82
n
84
GLY
82
B
THR
83
n
85
THR
83
B
GLU
84
n
86
GLU
84
B
LEU
85
n
87
LEU
85
B
ASN
86
n
88
ASN
86
B
ALA
87
n
89
ALA
87
B
THR
88
n
90
THR
88
B
HIS
89
n
91
HIS
89
B
HIS
90
n
92
HIS
90
B
ARG
91
n
93
ARG
91
B
PRO
92
n
94
PRO
92
B
VAL
93
n
95
VAL
93
B
SER
94
n
96
SER
94
B
GLU
95
n
97
GLU
95
B
GLY
96
n
98
GLY
96
B
LYS
97
n
99
LYS
97
B
VAL
98
n
100
VAL
98
B
ARG
99
n
101
ARG
99
B
GLY
100
n
102
GLY
100
B
VAL
101
n
103
VAL
101
B
CYS
102
n
104
CYS
102
B
GLN
103
n
105
GLN
103
B
PRO
104
n
106
PRO
104
B
LEU
105
n
107
LEU
105
B
HIS
106
n
108
HIS
106
B
LEU
107
n
109
LEU
107
B
GLY
108
n
110
GLY
108
B
ARG
109
n
111
ARG
109
B
GLN
110
n
112
GLN
110
B
ASN
111
n
113
ASN
111
B
GLN
112
n
114
GLN
112
B
SER
113
n
115
SER
113
B
TRP
114
n
116
TRP
114
B
GLU
115
n
117
GLU
115
B
ILE
116
n
118
ILE
116
B
VAL
117
n
119
VAL
117
B
VAL
118
n
120
VAL
118
B
PHE
119
n
121
PHE
119
B
ASP
120
n
122
ASP
120
B
GLU
121
n
123
GLU
121
B
GLN
122
n
124
GLN
122
B
GLY
123
n
125
GLY
123
B
ARG
124
n
126
ARG
124
B
ARG
125
n
127
ARG
125
B
CYS
126
n
128
CYS
126
B
CYS
127
n
129
CYS
127
B
THR
128
n
130
THR
128
B
CYS
129
n
131
CYS
129
B
ARG
130
n
132
ARG
130
B
LEU
131
n
133
LEU
131
B
GLY
132
n
134
GLY
132
B
THR
133
n
135
THR
133
B
ALA
134
n
136
ALA
134
B
VAL
135
n
137
VAL
135
B
LEU
136
n
138
LEU
136
B
GLY
137
n
139
GLY
137
B
n
140
138
B
n
141
139
B
n
142
140
B
n
143
141
B
n
144
142
B
n
145
143
B
n
146
144
B
n
147
145
B
n
148
146
B
n
149
147
B
author_and_software_defined_assembly
PQS
2
dimeric
software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
2
dimeric
2620
-20
12240
2210
-15
12560
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_655
-x+1,y,-z+1/2
crystal symmetry operation
53.8220000000
0.0000000000
41.5250000000
A
N
ARG
30
A
N
ARG
32
A
O
GLU
37
A
O
GLU
39
A
N
ALA
38
A
N
ALA
40
A
O
GLY
100
A
O
GLY
102
A
N
GLN
103
A
N
GLN
105
A
O
GLU
115
A
O
GLU
117
A
N
VAL
118
A
N
VAL
120
A
O
CYS
126
A
O
CYS
128
A
O
GLY
132
A
O
GLY
134
A
N
GLU
84
A
N
GLU
86
B
N
VAL
27
B
N
VAL
29
B
O
GLU
39
B
O
GLU
41
B
N
LEU
36
B
N
LEU
38
B
O
CYS
102
B
O
CYS
104
B
N
GLN
103
B
N
GLN
105
B
O
GLU
115
B
O
GLU
117
B
N
VAL
118
B
N
VAL
120
B
O
CYS
126
B
O
CYS
128
B
O
GLY
132
B
O
GLY
134
B
N
GLU
84
B
N
GLU
86
1
A
CE
LYS
4
A
CE
LYS
6
1
Y
1
A
NZ
LYS
4
A
NZ
LYS
6
1
Y
1
A
CG
PHE
50
A
CG
PHE
52
1
Y
1
A
CD1
PHE
50
A
CD1
PHE
52
1
Y
1
A
CD2
PHE
50
A
CD2
PHE
52
1
Y
1
A
CE1
PHE
50
A
CE1
PHE
52
1
Y
1
A
CE2
PHE
50
A
CE2
PHE
52
1
Y
1
A
CZ
PHE
50
A
CZ
PHE
52
1
Y
1
B
CG
GLN
110
B
CG
GLN
112
1
Y
1
B
CD
GLN
110
B
CD
GLN
112
1
Y
1
B
OE1
GLN
110
B
OE1
GLN
112
1
Y
1
B
NE2
GLN
110
B
NE2
GLN
112
1
Y
1
A
MET
-1
A
MET
1
1
Y
1
A
GLU
138
A
GLU
140
1
Y
1
A
GLY
139
A
GLY
141
1
Y
1
A
GLY
140
A
GLY
142
1
Y
1
A
SER
141
A
SER
143
1
Y
1
A
HIS
142
A
HIS
144
1
Y
1
A
HIS
143
A
HIS
145
1
Y
1
A
HIS
144
A
HIS
146
1
Y
1
A
HIS
145
A
HIS
147
1
Y
1
A
HIS
146
A
HIS
148
1
Y
1
A
HIS
147
A
HIS
149
1
Y
1
B
MET
-1
B
MET
1
1
Y
1
B
GLU
138
B
GLU
140
1
Y
1
B
GLY
139
B
GLY
141
1
Y
1
B
GLY
140
B
GLY
142
1
Y
1
B
SER
141
B
SER
143
1
Y
1
B
HIS
142
B
HIS
144
1
Y
1
B
HIS
143
B
HIS
145
1
Y
1
B
HIS
144
B
HIS
146
1
Y
1
B
HIS
145
B
HIS
147
1
Y
1
B
HIS
146
B
HIS
148
1
Y
1
B
HIS
147
B
HIS
149
1
Y
1
A
ASP
34
-147.03
29.40
1
A
THR
44
-39.39
-38.18
1
A
PRO
49
-20.47
-66.17
1
A
ASP
76
-34.66
127.76
1
A
LEU
136
-102.84
44.34
1
B
ASP
34
-143.01
30.35
1
B
PRO
49
-44.56
-19.56
1
B
ASP
76
-33.66
129.19
1
B
LEU
136
-97.71
-94.65
38.504
2.137
0.000
0.000
0.021
0.000
-2.158
0.272
0.23
2.15
34.59
784
15700
1
0
MOLECULAR REPLACEMENT
Babinet bulk solvent correction
367.881
0.935
isotropic
2.15
34.59
126
2212
0
0
2086
0.007
1.419
1.402
0.101
0.005
1.521
2.592
2.164
2.904
2.15
34.59
1VH9
15701
15701
0.07
1
24.9
6.43
99.8
0.442
2.15
2.23
3.4
1
99.6
data reduction
DENZO
data scaling
SCALEPACK
refinement
REFMAC
4.0
Crystal structure of a putative thioesterase
1
N
N
1
N
N
2
N
N
2
N
N
A
THR
8
A
THR
10
HELX_P
A
THR
15
A
THR
17
1
1
8
A
THR
19
A
THR
21
HELX_P
A
LEU
24
A
LEU
26
1
2
6
A
HIS
54
A
HIS
56
HELX_P
A
MET
72
A
MET
74
1
3
19
B
THR
8
B
THR
10
HELX_P
B
THR
15
B
THR
17
1
4
8
B
THR
19
B
THR
21
HELX_P
B
LEU
24
B
LEU
26
1
5
6
B
HIS
54
B
HIS
56
HELX_P
B
MET
72
B
MET
74
1
6
19
Structural genomics, unknown function
structural genomics, unknown function
YBDB_ECOLI
UNP
1
1
P0A8Y8
MIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCV
VGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLG
2
137
1VH9
2
137
P0A8Y8
A
1
4
139
2
137
1VH9
2
137
P0A8Y8
B
1
4
139
1
cloning artifact
MET
-1
1VH9
A
P0A8Y8
UNP
1
1
cloning artifact
SER
0
1VH9
A
P0A8Y8
UNP
2
1
cloning artifact
LEU
1
1VH9
A
P0A8Y8
UNP
3
1
cloning artifact
GLU
138
1VH9
A
P0A8Y8
UNP
140
1
cloning artifact
GLY
139
1VH9
A
P0A8Y8
UNP
141
1
cloning artifact
GLY
140
1VH9
A
P0A8Y8
UNP
142
1
cloning artifact
SER
141
1VH9
A
P0A8Y8
UNP
143
1
cloning artifact
HIS
142
1VH9
A
P0A8Y8
UNP
144
1
cloning artifact
HIS
143
1VH9
A
P0A8Y8
UNP
145
1
cloning artifact
HIS
144
1VH9
A
P0A8Y8
UNP
146
1
cloning artifact
HIS
145
1VH9
A
P0A8Y8
UNP
147
1
cloning artifact
HIS
146
1VH9
A
P0A8Y8
UNP
148
1
cloning artifact
HIS
147
1VH9
A
P0A8Y8
UNP
149
2
cloning artifact
MET
-1
1VH9
B
P0A8Y8
UNP
1
2
cloning artifact
SER
0
1VH9
B
P0A8Y8
UNP
2
2
cloning artifact
LEU
1
1VH9
B
P0A8Y8
UNP
3
2
cloning artifact
GLU
138
1VH9
B
P0A8Y8
UNP
140
2
cloning artifact
GLY
139
1VH9
B
P0A8Y8
UNP
141
2
cloning artifact
GLY
140
1VH9
B
P0A8Y8
UNP
142
2
cloning artifact
SER
141
1VH9
B
P0A8Y8
UNP
143
2
cloning artifact
HIS
142
1VH9
B
P0A8Y8
UNP
144
2
cloning artifact
HIS
143
1VH9
B
P0A8Y8
UNP
145
2
cloning artifact
HIS
144
1VH9
B
P0A8Y8
UNP
146
2
cloning artifact
HIS
145
1VH9
B
P0A8Y8
UNP
147
2
cloning artifact
HIS
146
1VH9
B
P0A8Y8
UNP
148
2
cloning artifact
HIS
147
1VH9
B
P0A8Y8
UNP
149
6
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
27
A
VAL
29
A
LEU
31
A
LEU
33
A
LEU
36
A
LEU
38
A
PRO
41
A
PRO
43
A
LYS
97
A
LYS
99
A
LEU
107
A
LEU
109
A
ASN
111
A
ASN
113
A
PHE
119
A
PHE
121
A
ARG
125
A
ARG
127
A
VAL
135
A
VAL
137
A
VAL
80
A
VAL
82
A
HIS
89
A
HIS
91
B
VAL
27
B
VAL
29
B
LEU
31
B
LEU
33
B
LEU
36
B
LEU
38
B
PRO
41
B
PRO
43
B
LYS
97
B
LYS
99
B
LEU
107
B
LEU
109
B
ASN
111
B
ASN
113
B
PHE
119
B
PHE
121
B
ARG
125
B
ARG
127
B
VAL
135
B
VAL
137
B
VAL
80
B
VAL
82
B
HIS
89
B
HIS
91
20
C 2 2 21