0.010639
0.000000
0.000000
0.000000
0.010639
0.000000
0.000000
0.000000
0.006236
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
93.998
93.998
160.365
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
Ni 2
58.693
NICKEL (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of 4-nitrophenylphosphatase (TM1742) from Thermotoga maritima at 2.40 A resolution
10.2210/pdb1vjr/pdb
pdb_00001vjr
100
1
CCD
2003-05-22
ADSC
Double Crystal Si(111)
MAD
M
x-ray
1
0.9797
1.0
0.9999
1.0
0.9799
1.0
8.2.2
ALS
0.9797, 0.9999, 0.9799
SYNCHROTRON
ALS BEAMLINE 8.2.2
30554.322
4-nitrophenylphosphatase
3.1.3.41
1
man
polymer
58.693
NICKEL (II) ION
1
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
18.015
water
279
nat
water
no
yes
MGSDKIHHHHHHVLDKIELFILD(MSE)DGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRN
(MSE)GVDVPDDAVVTSGEITAEH(MSE)LKRFGRCRIFLLGTPQLKKVFEAYGHVIDEENPDFVVLGFDKTLTYERLKK
ACILLRKGKFYIATHPDINCPSKEGPVPDAGSI(MSE)AAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKER(MSE)A
(MSE)VGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERAETKPDFVFKNLGELAKAVQ
MGSDKIHHHHHHVLDKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDVPDD
AVVTSGEITAEHMLKRFGRCRIFLLGTPQLKKVFEAYGHVIDEENPDFVVLGFDKTLTYERLKKACILLRKGKFYIATHP
DINCPSKEGPVPDAGSIMAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERMAMVGDRLYTDVKLGKNAGIVSILVL
TGETTPEDLERAETKPDFVFKNLGELAKAVQ
A
283597,356069,356070,356071,356077,356253
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermotoga
Escherichia
sample
TM1742
2336
Thermotoga maritima
562
Escherichia coli
Plasmid
1
5.35
76.82
VAPOR DIFFUSION,SITTING DROP,NANODROP
6.5
2M sodium chloride, 0.1M MES pH 6.5, 0.1M sodium dihydrogen phosphate, 0.1M potassium dihydrogen phosphate, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 273K
273
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Advisory
Version format compliance
Database references
Derived calculations
1
0
2004-03-30
1
1
2008-04-26
1
2
2011-07-13
1
3
2023-01-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
SEQUENCE
FOR THE VAL/MET CONFLICT AT RESIDUE 1:
THIS GENE USES AN ALTERNATE INITIATION CODON
THAT RESULTS IN A VALINE AT POSITION 1 WHEN
EXPRESSED AS A FUSION.
Y
RCSB
Y
RCSB
2004-03-22
REL
REL
NI
NICKEL (II) ION
CL
CHLORIDE ION
HOH
water
NI
1
2
NI
NI
260
A
CL
2
3
CL
CL
261
A
CL
3
3
CL
CL
262
A
HOH
4
4
HOH
HOH
263
A
HOH
5
4
HOH
HOH
264
A
HOH
6
4
HOH
HOH
265
A
HOH
7
4
HOH
HOH
266
A
HOH
8
4
HOH
HOH
267
A
HOH
9
4
HOH
HOH
268
A
HOH
10
4
HOH
HOH
269
A
HOH
11
4
HOH
HOH
270
A
HOH
12
4
HOH
HOH
271
A
HOH
13
4
HOH
HOH
272
A
HOH
14
4
HOH
HOH
273
A
HOH
15
4
HOH
HOH
274
A
HOH
16
4
HOH
HOH
275
A
HOH
17
4
HOH
HOH
276
A
HOH
18
4
HOH
HOH
277
A
HOH
19
4
HOH
HOH
278
A
HOH
20
4
HOH
HOH
279
A
HOH
21
4
HOH
HOH
280
A
HOH
22
4
HOH
HOH
281
A
HOH
23
4
HOH
HOH
282
A
HOH
24
4
HOH
HOH
283
A
HOH
25
4
HOH
HOH
284
A
HOH
26
4
HOH
HOH
285
A
HOH
27
4
HOH
HOH
286
A
HOH
28
4
HOH
HOH
287
A
HOH
29
4
HOH
HOH
288
A
HOH
30
4
HOH
HOH
289
A
HOH
31
4
HOH
HOH
290
A
HOH
32
4
HOH
HOH
291
A
HOH
33
4
HOH
HOH
292
A
HOH
34
4
HOH
HOH
293
A
HOH
35
4
HOH
HOH
294
A
HOH
36
4
HOH
HOH
295
A
HOH
37
4
HOH
HOH
296
A
HOH
38
4
HOH
HOH
297
A
HOH
39
4
HOH
HOH
298
A
HOH
40
4
HOH
HOH
299
A
HOH
41
4
HOH
HOH
300
A
HOH
42
4
HOH
HOH
301
A
HOH
43
4
HOH
HOH
302
A
HOH
44
4
HOH
HOH
303
A
HOH
45
4
HOH
HOH
304
A
HOH
46
4
HOH
HOH
305
A
HOH
47
4
HOH
HOH
306
A
HOH
48
4
HOH
HOH
307
A
HOH
49
4
HOH
HOH
308
A
HOH
50
4
HOH
HOH
309
A
HOH
51
4
HOH
HOH
310
A
HOH
52
4
HOH
HOH
311
A
HOH
53
4
HOH
HOH
312
A
HOH
54
4
HOH
HOH
313
A
HOH
55
4
HOH
HOH
314
A
HOH
56
4
HOH
HOH
315
A
HOH
57
4
HOH
HOH
316
A
HOH
58
4
HOH
HOH
317
A
HOH
59
4
HOH
HOH
318
A
HOH
60
4
HOH
HOH
319
A
HOH
61
4
HOH
HOH
320
A
HOH
62
4
HOH
HOH
321
A
HOH
63
4
HOH
HOH
322
A
HOH
64
4
HOH
HOH
323
A
HOH
65
4
HOH
HOH
324
A
HOH
66
4
HOH
HOH
325
A
HOH
67
4
HOH
HOH
326
A
HOH
68
4
HOH
HOH
327
A
HOH
69
4
HOH
HOH
328
A
HOH
70
4
HOH
HOH
329
A
HOH
71
4
HOH
HOH
330
A
HOH
72
4
HOH
HOH
331
A
HOH
73
4
HOH
HOH
332
A
HOH
74
4
HOH
HOH
333
A
HOH
75
4
HOH
HOH
334
A
HOH
76
4
HOH
HOH
335
A
HOH
77
4
HOH
HOH
336
A
HOH
78
4
HOH
HOH
337
A
HOH
79
4
HOH
HOH
338
A
HOH
80
4
HOH
HOH
339
A
HOH
81
4
HOH
HOH
340
A
HOH
82
4
HOH
HOH
341
A
HOH
83
4
HOH
HOH
342
A
HOH
84
4
HOH
HOH
343
A
HOH
85
4
HOH
HOH
344
A
HOH
86
4
HOH
HOH
345
A
HOH
87
4
HOH
HOH
346
A
HOH
88
4
HOH
HOH
347
A
HOH
89
4
HOH
HOH
348
A
HOH
90
4
HOH
HOH
349
A
HOH
91
4
HOH
HOH
350
A
HOH
92
4
HOH
HOH
351
A
HOH
93
4
HOH
HOH
352
A
HOH
94
4
HOH
HOH
353
A
HOH
95
4
HOH
HOH
354
A
HOH
96
4
HOH
HOH
355
A
HOH
97
4
HOH
HOH
356
A
HOH
98
4
HOH
HOH
357
A
HOH
99
4
HOH
HOH
358
A
HOH
100
4
HOH
HOH
359
A
HOH
101
4
HOH
HOH
360
A
HOH
102
4
HOH
HOH
361
A
HOH
103
4
HOH
HOH
362
A
HOH
104
4
HOH
HOH
363
A
HOH
105
4
HOH
HOH
364
A
HOH
106
4
HOH
HOH
365
A
HOH
107
4
HOH
HOH
366
A
HOH
108
4
HOH
HOH
367
A
HOH
109
4
HOH
HOH
368
A
HOH
110
4
HOH
HOH
369
A
HOH
111
4
HOH
HOH
370
A
HOH
112
4
HOH
HOH
371
A
HOH
113
4
HOH
HOH
372
A
HOH
114
4
HOH
HOH
373
A
HOH
115
4
HOH
HOH
374
A
HOH
116
4
HOH
HOH
375
A
HOH
117
4
HOH
HOH
376
A
HOH
118
4
HOH
HOH
377
A
HOH
119
4
HOH
HOH
378
A
HOH
120
4
HOH
HOH
379
A
HOH
121
4
HOH
HOH
380
A
HOH
122
4
HOH
HOH
381
A
HOH
123
4
HOH
HOH
382
A
HOH
124
4
HOH
HOH
383
A
HOH
125
4
HOH
HOH
384
A
HOH
126
4
HOH
HOH
385
A
HOH
127
4
HOH
HOH
386
A
HOH
128
4
HOH
HOH
387
A
HOH
129
4
HOH
HOH
388
A
HOH
130
4
HOH
HOH
389
A
HOH
131
4
HOH
HOH
390
A
HOH
132
4
HOH
HOH
391
A
HOH
133
4
HOH
HOH
392
A
HOH
134
4
HOH
HOH
393
A
HOH
135
4
HOH
HOH
394
A
HOH
136
4
HOH
HOH
395
A
HOH
137
4
HOH
HOH
396
A
HOH
138
4
HOH
HOH
397
A
HOH
139
4
HOH
HOH
398
A
HOH
140
4
HOH
HOH
399
A
HOH
141
4
HOH
HOH
400
A
HOH
142
4
HOH
HOH
401
A
HOH
143
4
HOH
HOH
402
A
HOH
144
4
HOH
HOH
403
A
HOH
145
4
HOH
HOH
404
A
HOH
146
4
HOH
HOH
405
A
HOH
147
4
HOH
HOH
406
A
HOH
148
4
HOH
HOH
407
A
HOH
149
4
HOH
HOH
408
A
HOH
150
4
HOH
HOH
409
A
HOH
151
4
HOH
HOH
410
A
HOH
152
4
HOH
HOH
411
A
HOH
153
4
HOH
HOH
412
A
HOH
154
4
HOH
HOH
413
A
HOH
155
4
HOH
HOH
414
A
HOH
156
4
HOH
HOH
415
A
HOH
157
4
HOH
HOH
416
A
HOH
158
4
HOH
HOH
417
A
HOH
159
4
HOH
HOH
418
A
HOH
160
4
HOH
HOH
419
A
HOH
161
4
HOH
HOH
420
A
HOH
162
4
HOH
HOH
421
A
HOH
163
4
HOH
HOH
422
A
HOH
164
4
HOH
HOH
423
A
HOH
165
4
HOH
HOH
424
A
HOH
166
4
HOH
HOH
425
A
HOH
167
4
HOH
HOH
426
A
HOH
168
4
HOH
HOH
427
A
HOH
169
4
HOH
HOH
428
A
HOH
170
4
HOH
HOH
429
A
HOH
171
4
HOH
HOH
430
A
HOH
172
4
HOH
HOH
431
A
HOH
173
4
HOH
HOH
432
A
HOH
174
4
HOH
HOH
433
A
HOH
175
4
HOH
HOH
434
A
HOH
176
4
HOH
HOH
435
A
HOH
177
4
HOH
HOH
436
A
HOH
178
4
HOH
HOH
437
A
HOH
179
4
HOH
HOH
438
A
HOH
180
4
HOH
HOH
439
A
HOH
181
4
HOH
HOH
440
A
HOH
182
4
HOH
HOH
441
A
HOH
183
4
HOH
HOH
442
A
HOH
184
4
HOH
HOH
443
A
HOH
185
4
HOH
HOH
444
A
HOH
186
4
HOH
HOH
445
A
HOH
187
4
HOH
HOH
446
A
HOH
188
4
HOH
HOH
447
A
HOH
189
4
HOH
HOH
448
A
HOH
190
4
HOH
HOH
449
A
HOH
191
4
HOH
HOH
450
A
HOH
192
4
HOH
HOH
451
A
HOH
193
4
HOH
HOH
452
A
HOH
194
4
HOH
HOH
453
A
HOH
195
4
HOH
HOH
454
A
HOH
196
4
HOH
HOH
455
A
HOH
197
4
HOH
HOH
456
A
HOH
198
4
HOH
HOH
457
A
HOH
199
4
HOH
HOH
458
A
HOH
200
4
HOH
HOH
459
A
HOH
201
4
HOH
HOH
460
A
HOH
202
4
HOH
HOH
461
A
HOH
203
4
HOH
HOH
462
A
HOH
204
4
HOH
HOH
463
A
HOH
205
4
HOH
HOH
464
A
HOH
206
4
HOH
HOH
465
A
HOH
207
4
HOH
HOH
466
A
HOH
208
4
HOH
HOH
467
A
HOH
209
4
HOH
HOH
468
A
HOH
210
4
HOH
HOH
469
A
HOH
211
4
HOH
HOH
470
A
HOH
212
4
HOH
HOH
471
A
HOH
213
4
HOH
HOH
472
A
HOH
214
4
HOH
HOH
473
A
HOH
215
4
HOH
HOH
474
A
HOH
216
4
HOH
HOH
475
A
HOH
217
4
HOH
HOH
476
A
HOH
218
4
HOH
HOH
477
A
HOH
219
4
HOH
HOH
478
A
HOH
220
4
HOH
HOH
479
A
HOH
221
4
HOH
HOH
480
A
HOH
222
4
HOH
HOH
481
A
HOH
223
4
HOH
HOH
482
A
HOH
224
4
HOH
HOH
483
A
HOH
225
4
HOH
HOH
484
A
HOH
226
4
HOH
HOH
485
A
HOH
227
4
HOH
HOH
486
A
HOH
228
4
HOH
HOH
487
A
HOH
229
4
HOH
HOH
488
A
HOH
230
4
HOH
HOH
489
A
HOH
231
4
HOH
HOH
490
A
HOH
232
4
HOH
HOH
491
A
HOH
233
4
HOH
HOH
492
A
HOH
234
4
HOH
HOH
493
A
HOH
235
4
HOH
HOH
494
A
HOH
236
4
HOH
HOH
495
A
HOH
237
4
HOH
HOH
496
A
HOH
238
4
HOH
HOH
497
A
HOH
239
4
HOH
HOH
498
A
HOH
240
4
HOH
HOH
499
A
HOH
241
4
HOH
HOH
500
A
HOH
242
4
HOH
HOH
501
A
HOH
243
4
HOH
HOH
502
A
HOH
244
4
HOH
HOH
503
A
HOH
245
4
HOH
HOH
504
A
HOH
246
4
HOH
HOH
505
A
HOH
247
4
HOH
HOH
506
A
HOH
248
4
HOH
HOH
507
A
HOH
249
4
HOH
HOH
508
A
HOH
250
4
HOH
HOH
509
A
HOH
251
4
HOH
HOH
510
A
HOH
252
4
HOH
HOH
511
A
HOH
253
4
HOH
HOH
512
A
HOH
254
4
HOH
HOH
513
A
HOH
255
4
HOH
HOH
514
A
HOH
256
4
HOH
HOH
515
A
HOH
257
4
HOH
HOH
516
A
HOH
258
4
HOH
HOH
517
A
HOH
259
4
HOH
HOH
518
A
HOH
260
4
HOH
HOH
519
A
HOH
261
4
HOH
HOH
520
A
HOH
262
4
HOH
HOH
521
A
HOH
263
4
HOH
HOH
522
A
HOH
264
4
HOH
HOH
523
A
HOH
265
4
HOH
HOH
524
A
HOH
266
4
HOH
HOH
525
A
HOH
267
4
HOH
HOH
526
A
HOH
268
4
HOH
HOH
527
A
HOH
269
4
HOH
HOH
528
A
HOH
270
4
HOH
HOH
529
A
HOH
271
4
HOH
HOH
530
A
HOH
272
4
HOH
HOH
531
A
HOH
273
4
HOH
HOH
532
A
HOH
274
4
HOH
HOH
533
A
HOH
275
4
HOH
HOH
534
A
HOH
276
4
HOH
HOH
535
A
HOH
277
4
HOH
HOH
536
A
HOH
278
4
HOH
HOH
537
A
HOH
279
4
HOH
HOH
538
A
HOH
280
4
HOH
HOH
539
A
HOH
281
4
HOH
HOH
540
A
HOH
282
4
HOH
HOH
541
A
n
1
-11
A
n
2
-10
A
n
3
-9
A
n
4
-8
A
n
5
-7
A
n
6
-6
A
n
7
-5
A
n
8
-4
A
n
9
-3
A
n
10
-2
A
HIS
-1
n
11
HIS
-1
A
HIS
0
n
12
HIS
0
A
VAL
1
n
13
VAL
1
A
LEU
2
n
14
LEU
2
A
ASP
3
n
15
ASP
3
A
LYS
4
n
16
LYS
4
A
ILE
5
n
17
ILE
5
A
GLU
6
n
18
GLU
6
A
LEU
7
n
19
LEU
7
A
PHE
8
n
20
PHE
8
A
ILE
9
n
21
ILE
9
A
LEU
10
n
22
LEU
10
A
ASP
11
n
23
ASP
11
A
MSE
12
n
24
MSE
12
A
ASP
13
n
25
ASP
13
A
GLY
14
n
26
GLY
14
A
THR
15
n
27
THR
15
A
PHE
16
n
28
PHE
16
A
TYR
17
n
29
TYR
17
A
LEU
18
n
30
LEU
18
A
ASP
19
n
31
ASP
19
A
ASP
20
n
32
ASP
20
A
SER
21
n
33
SER
21
A
LEU
22
n
34
LEU
22
A
LEU
23
n
35
LEU
23
A
PRO
24
n
36
PRO
24
A
GLY
25
n
37
GLY
25
A
SER
26
n
38
SER
26
A
LEU
27
n
39
LEU
27
A
GLU
28
n
40
GLU
28
A
PHE
29
n
41
PHE
29
A
LEU
30
n
42
LEU
30
A
GLU
31
n
43
GLU
31
A
THR
32
n
44
THR
32
A
LEU
33
n
45
LEU
33
A
LYS
34
n
46
LYS
34
A
GLU
35
n
47
GLU
35
A
LYS
36
n
48
LYS
36
A
ASN
37
n
49
ASN
37
A
LYS
38
n
50
LYS
38
A
ARG
39
n
51
ARG
39
A
PHE
40
n
52
PHE
40
A
VAL
41
n
53
VAL
41
A
PHE
42
n
54
PHE
42
A
PHE
43
n
55
PHE
43
A
THR
44
n
56
THR
44
A
ASN
45
n
57
ASN
45
A
ASN
46
n
58
ASN
46
A
SER
47
n
59
SER
47
A
SER
48
n
60
SER
48
A
LEU
49
n
61
LEU
49
A
GLY
50
n
62
GLY
50
A
ALA
51
n
63
ALA
51
A
GLN
52
n
64
GLN
52
A
ASP
53
n
65
ASP
53
A
TYR
54
n
66
TYR
54
A
VAL
55
n
67
VAL
55
A
ARG
56
n
68
ARG
56
A
LYS
57
n
69
LYS
57
A
LEU
58
n
70
LEU
58
A
ARG
59
n
71
ARG
59
A
ASN
60
n
72
ASN
60
A
MSE
61
n
73
MSE
61
A
GLY
62
n
74
GLY
62
A
VAL
63
n
75
VAL
63
A
ASP
64
n
76
ASP
64
A
VAL
65
n
77
VAL
65
A
PRO
66
n
78
PRO
66
A
ASP
67
n
79
ASP
67
A
ASP
68
n
80
ASP
68
A
ALA
69
n
81
ALA
69
A
VAL
70
n
82
VAL
70
A
VAL
71
n
83
VAL
71
A
THR
72
n
84
THR
72
A
SER
73
n
85
SER
73
A
GLY
74
n
86
GLY
74
A
GLU
75
n
87
GLU
75
A
ILE
76
n
88
ILE
76
A
THR
77
n
89
THR
77
A
ALA
78
n
90
ALA
78
A
GLU
79
n
91
GLU
79
A
HIS
80
n
92
HIS
80
A
MSE
81
n
93
MSE
81
A
LEU
82
n
94
LEU
82
A
LYS
83
n
95
LYS
83
A
ARG
84
n
96
ARG
84
A
PHE
85
n
97
PHE
85
A
GLY
86
n
98
GLY
86
A
ARG
87
n
99
ARG
87
A
CYS
88
n
100
CYS
88
A
ARG
89
n
101
ARG
89
A
ILE
90
n
102
ILE
90
A
PHE
91
n
103
PHE
91
A
LEU
92
n
104
LEU
92
A
LEU
93
n
105
LEU
93
A
GLY
94
n
106
GLY
94
A
THR
95
n
107
THR
95
A
PRO
96
n
108
PRO
96
A
GLN
97
n
109
GLN
97
A
LEU
98
n
110
LEU
98
A
LYS
99
n
111
LYS
99
A
LYS
100
n
112
LYS
100
A
VAL
101
n
113
VAL
101
A
PHE
102
n
114
PHE
102
A
GLU
103
n
115
GLU
103
A
ALA
104
n
116
ALA
104
A
TYR
105
n
117
TYR
105
A
GLY
106
n
118
GLY
106
A
HIS
107
n
119
HIS
107
A
VAL
108
n
120
VAL
108
A
ILE
109
n
121
ILE
109
A
ASP
110
n
122
ASP
110
A
GLU
111
n
123
GLU
111
A
GLU
112
n
124
GLU
112
A
ASN
113
n
125
ASN
113
A
PRO
114
n
126
PRO
114
A
ASP
115
n
127
ASP
115
A
PHE
116
n
128
PHE
116
A
VAL
117
n
129
VAL
117
A
VAL
118
n
130
VAL
118
A
LEU
119
n
131
LEU
119
A
GLY
120
n
132
GLY
120
A
PHE
121
n
133
PHE
121
A
ASP
122
n
134
ASP
122
A
LYS
123
n
135
LYS
123
A
THR
124
n
136
THR
124
A
LEU
125
n
137
LEU
125
A
THR
126
n
138
THR
126
A
TYR
127
n
139
TYR
127
A
GLU
128
n
140
GLU
128
A
ARG
129
n
141
ARG
129
A
LEU
130
n
142
LEU
130
A
LYS
131
n
143
LYS
131
A
LYS
132
n
144
LYS
132
A
ALA
133
n
145
ALA
133
A
CYS
134
n
146
CYS
134
A
ILE
135
n
147
ILE
135
A
LEU
136
n
148
LEU
136
A
LEU
137
n
149
LEU
137
A
ARG
138
n
150
ARG
138
A
LYS
139
n
151
LYS
139
A
GLY
140
n
152
GLY
140
A
LYS
141
n
153
LYS
141
A
PHE
142
n
154
PHE
142
A
TYR
143
n
155
TYR
143
A
ILE
144
n
156
ILE
144
A
ALA
145
n
157
ALA
145
A
THR
146
n
158
THR
146
A
HIS
147
n
159
HIS
147
A
PRO
148
n
160
PRO
148
A
ASP
149
n
161
ASP
149
A
ILE
150
n
162
ILE
150
A
ASN
151
n
163
ASN
151
A
CYS
152
n
164
CYS
152
A
PRO
153
n
165
PRO
153
A
SER
154
n
166
SER
154
A
LYS
155
n
167
LYS
155
A
GLU
156
n
168
GLU
156
A
GLY
157
n
169
GLY
157
A
PRO
158
n
170
PRO
158
A
VAL
159
n
171
VAL
159
A
PRO
160
n
172
PRO
160
A
ASP
161
n
173
ASP
161
A
ALA
162
n
174
ALA
162
A
GLY
163
n
175
GLY
163
A
SER
164
n
176
SER
164
A
ILE
165
n
177
ILE
165
A
MSE
166
n
178
MSE
166
A
ALA
167
n
179
ALA
167
A
ALA
168
n
180
ALA
168
A
ILE
169
n
181
ILE
169
A
GLU
170
n
182
GLU
170
A
ALA
171
n
183
ALA
171
A
SER
172
n
184
SER
172
A
THR
173
n
185
THR
173
A
GLY
174
n
186
GLY
174
A
ARG
175
n
187
ARG
175
A
LYS
176
n
188
LYS
176
A
PRO
177
n
189
PRO
177
A
ASP
178
n
190
ASP
178
A
LEU
179
n
191
LEU
179
A
ILE
180
n
192
ILE
180
A
ALA
181
n
193
ALA
181
A
GLY
182
n
194
GLY
182
A
LYS
183
n
195
LYS
183
A
PRO
184
n
196
PRO
184
A
ASN
185
n
197
ASN
185
A
PRO
186
n
198
PRO
186
A
LEU
187
n
199
LEU
187
A
VAL
188
n
200
VAL
188
A
VAL
189
n
201
VAL
189
A
ASP
190
n
202
ASP
190
A
VAL
191
n
203
VAL
191
A
ILE
192
n
204
ILE
192
A
SER
193
n
205
SER
193
A
GLU
194
n
206
GLU
194
A
LYS
195
n
207
LYS
195
A
PHE
196
n
208
PHE
196
A
GLY
197
n
209
GLY
197
A
VAL
198
n
210
VAL
198
A
PRO
199
n
211
PRO
199
A
LYS
200
n
212
LYS
200
A
GLU
201
n
213
GLU
201
A
ARG
202
n
214
ARG
202
A
MSE
203
n
215
MSE
203
A
ALA
204
n
216
ALA
204
A
MSE
205
n
217
MSE
205
A
VAL
206
n
218
VAL
206
A
GLY
207
n
219
GLY
207
A
ASP
208
n
220
ASP
208
A
ARG
209
n
221
ARG
209
A
LEU
210
n
222
LEU
210
A
TYR
211
n
223
TYR
211
A
THR
212
n
224
THR
212
A
ASP
213
n
225
ASP
213
A
VAL
214
n
226
VAL
214
A
LYS
215
n
227
LYS
215
A
LEU
216
n
228
LEU
216
A
GLY
217
n
229
GLY
217
A
LYS
218
n
230
LYS
218
A
ASN
219
n
231
ASN
219
A
ALA
220
n
232
ALA
220
A
GLY
221
n
233
GLY
221
A
ILE
222
n
234
ILE
222
A
VAL
223
n
235
VAL
223
A
SER
224
n
236
SER
224
A
ILE
225
n
237
ILE
225
A
LEU
226
n
238
LEU
226
A
VAL
227
n
239
VAL
227
A
LEU
228
n
240
LEU
228
A
THR
229
n
241
THR
229
A
GLY
230
n
242
GLY
230
A
GLU
231
n
243
GLU
231
A
THR
232
n
244
THR
232
A
THR
233
n
245
THR
233
A
PRO
234
n
246
PRO
234
A
GLU
235
n
247
GLU
235
A
ASP
236
n
248
ASP
236
A
LEU
237
n
249
LEU
237
A
GLU
238
n
250
GLU
238
A
ARG
239
n
251
ARG
239
A
ALA
240
n
252
ALA
240
A
GLU
241
n
253
GLU
241
A
THR
242
n
254
THR
242
A
LYS
243
n
255
LYS
243
A
PRO
244
n
256
PRO
244
A
ASP
245
n
257
ASP
245
A
PHE
246
n
258
PHE
246
A
VAL
247
n
259
VAL
247
A
PHE
248
n
260
PHE
248
A
LYS
249
n
261
LYS
249
A
ASN
250
n
262
ASN
250
A
LEU
251
n
263
LEU
251
A
GLY
252
n
264
GLY
252
A
GLU
253
n
265
GLU
253
A
LEU
254
n
266
LEU
254
A
ALA
255
n
267
ALA
255
A
LYS
256
n
268
LYS
256
A
ALA
257
n
269
ALA
257
A
VAL
258
n
270
VAL
258
A
GLN
259
n
271
GLN
259
A
2.2399
0.5936
-0.8810
2.5158
-1.4812
3.3699
0.0751
-0.1930
-0.1300
0.0875
-0.0710
-0.1962
-0.0217
0.4375
-0.0042
-0.0568
-0.0392
0.0073
0.0101
0.0083
-0.0686
refined
89.9930
59.6460
21.6200
X-RAY DIFFRACTION
2.1910
-0.9504
-0.3542
2.1412
-0.0535
1.3653
0.0223
0.0442
-0.0351
-0.1267
-0.0632
-0.1115
0.1106
0.0874
0.0410
-0.0133
-0.0675
0.0689
-0.0301
-0.0355
-0.0738
refined
88.2530
69.9990
-1.5860
X-RAY DIFFRACTION
A
-1
A
11
A
72
A
84
X-RAY DIFFRACTION
1
ALL
A
183
A
195
A
259
A
271
X-RAY DIFFRACTION
1
ALL
A
73
A
85
A
182
A
194
X-RAY DIFFRACTION
2
ALL
author_defined_assembly
1
monomeric
A
HIS
0
A
NE2
HIS
12
1_555
A
NI
260
B
NI
NI
1_555
A
HIS
80
A
NE2
HIS
92
3_645
99.5
A
HIS
0
A
NE2
HIS
12
1_555
A
NI
260
B
NI
NI
1_555
A
CL
261
C
CL
CL
1_555
113.6
A
HIS
80
A
NE2
HIS
92
3_645
A
NI
260
B
NI
NI
1_555
A
CL
261
C
CL
CL
1_555
120.3
A
HIS
0
A
NE2
HIS
12
1_555
A
NI
260
B
NI
NI
1_555
A
CL
262
D
CL
CL
1_555
106.1
A
HIS
80
A
NE2
HIS
92
3_645
A
NI
260
B
NI
NI
1_555
A
CL
262
D
CL
CL
1_555
101.7
A
CL
261
C
CL
CL
1_555
A
NI
260
B
NI
NI
1_555
A
CL
262
D
CL
CL
1_555
113.7
A
MSE
12
SELENOMETHIONINE
A
MSE
24
MET
A
MSE
61
SELENOMETHIONINE
A
MSE
73
MET
A
MSE
81
SELENOMETHIONINE
A
MSE
93
MET
A
MSE
166
SELENOMETHIONINE
A
MSE
178
MET
A
MSE
203
SELENOMETHIONINE
A
MSE
215
MET
A
MSE
205
SELENOMETHIONINE
A
MSE
217
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
71
A
O
VAL
83
A
N
PHE
42
A
N
PHE
54
A
O
VAL
41
A
O
VAL
53
A
N
LEU
10
A
N
LEU
22
A
N
ILE
9
A
N
ILE
21
A
O
VAL
206
A
O
VAL
218
A
N
MSE
205
A
N
MSE
217
A
O
ILE
225
A
O
ILE
237
A
N
LEU
226
A
N
LEU
238
A
O
PHE
246
A
O
PHE
258
A
N
LEU
18
A
N
LEU
30
A
O
SER
21
A
O
SER
33
A
O
VAL
108
A
O
VAL
120
A
N
ILE
90
A
N
ILE
102
A
N
PHE
91
A
N
PHE
103
A
O
VAL
118
A
O
VAL
130
A
N
LEU
119
A
N
LEU
131
A
O
ILE
144
A
O
ILE
156
A
N
ALA
145
A
N
ALA
157
A
O
LEU
179
A
O
LEU
191
A
N
CYS
152
A
N
CYS
164
A
O
VAL
159
A
O
VAL
171
1
A
N
HIS
-1
A
N
HIS
11
1
Y
1
A
CB
HIS
-1
A
CB
HIS
11
1
Y
1
A
CG
HIS
-1
A
CG
HIS
11
1
Y
1
A
ND1
HIS
-1
A
ND1
HIS
11
1
Y
1
A
CD2
HIS
-1
A
CD2
HIS
11
1
Y
1
A
CE1
HIS
-1
A
CE1
HIS
11
1
Y
1
A
NE2
HIS
-1
A
NE2
HIS
11
1
Y
1
A
CE
LYS
4
A
CE
LYS
16
1
Y
1
A
NZ
LYS
4
A
NZ
LYS
16
1
Y
1
A
CE
LYS
155
A
CE
LYS
167
1
Y
1
A
NZ
LYS
155
A
NZ
LYS
167
1
Y
1
A
CD
GLU
194
A
CD
GLU
206
1
Y
1
A
OE1
GLU
194
A
OE1
GLU
206
1
Y
1
A
OE2
GLU
194
A
OE2
GLU
206
1
Y
1
A
MET
-11
A
MET
1
1
Y
1
A
GLY
-10
A
GLY
2
1
Y
1
A
SER
-9
A
SER
3
1
Y
1
A
ASP
-8
A
ASP
4
1
Y
1
A
LYS
-7
A
LYS
5
1
Y
1
A
ILE
-6
A
ILE
6
1
Y
1
A
HIS
-5
A
HIS
7
1
Y
1
A
HIS
-4
A
HIS
8
1
Y
1
A
HIS
-3
A
HIS
9
1
Y
1
A
HIS
-2
A
HIS
10
1
Y
1
A
A
OD2
O
ASP
HOH
20
520
2.18
B
1
6.13
0.90
118.30
124.43
A
A
A
CB
CG
OD2
ASP
ASP
ASP
20
20
20
C
C
C
N
1
6.46
0.90
118.30
124.76
A
A
A
CB
CG
OD2
ASP
ASP
ASP
53
53
53
N
1
5.48
0.90
118.30
123.78
A
A
A
CB
CG
OD2
ASP
ASP
ASP
178
178
178
N
1
A
MSE
12
-102.14
-90.20
1
A
THR
15
-120.36
-56.45
1
A
ASP
19
73.11
-104.12
1
A
ASP
161
-126.42
-164.41
44.646
1.56
0.00
0.00
1.56
0.00
-3.12
0.963
0.956
0.19427
0.16381
0.1653
2.40
51.17
1485
27354
5.1
99.92
7.955
0.101
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MAD
0.146
0.140
0.80
0.80
1.20
BABINET MODEL WITH MASK
2.40
51.17
279
2312
3
0
2030
0.016
0.022
2130
1.427
1.979
2889
5.828
5.000
275
36.945
24.479
96
14.025
15.000
393
13.771
15.000
14
0.093
0.200
328
0.005
0.020
1607
0.198
0.200
989
0.134
0.200
167
0.145
0.200
32
0.087
0.200
11
2.080
3.000
1357
3.092
5.000
2149
6.486
8.000
848
8.850
11.000
732
0.327
0.274
2.462
120
1955
20
5.78
57.98
2.400
94.00
1VJR
28916
0.072
1
14.5
4.6
100.0
2.40
2.46
2.3
2087
0.537
1
4.8
100.0
data reduction
MOSFLM
data scaling
SCALA
4.2)
phasing
SOLVE
phasing
autoSHARP
refinement
REFMAC
5.2.0000
data scaling
CCP4
(SCALA)
Crystal structure of 4-nitrophenylphosphatase (TM1742) from Thermotoga maritima at 2.40 A resolution
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
A
HIS
0
A
HIS
12
HELX_P
A
ILE
5
A
ILE
17
5
1
6
A
GLY
25
A
GLY
37
HELX_P
A
LYS
36
A
LYS
48
1
2
12
A
GLY
50
A
GLY
62
HELX_P
A
MSE
61
A
MSE
73
1
3
12
A
PRO
66
A
PRO
78
HELX_P
A
ASP
68
A
ASP
80
5
4
3
A
SER
73
A
SER
85
HELX_P
A
GLY
86
A
GLY
98
1
5
14
A
THR
95
A
THR
107
HELX_P
A
TYR
105
A
TYR
117
1
6
11
A
THR
126
A
THR
138
HELX_P
A
ARG
138
A
ARG
150
1
7
13
A
ASP
161
A
ASP
173
HELX_P
A
GLY
174
A
GLY
186
1
8
14
A
PRO
186
A
PRO
198
HELX_P
A
GLY
197
A
GLY
209
1
9
12
A
PRO
199
A
PRO
211
HELX_P
A
GLU
201
A
GLU
213
5
10
3
A
ARG
209
A
ARG
221
HELX_P
A
GLY
221
A
GLY
233
1
11
13
A
THR
233
A
THR
245
HELX_P
A
ALA
240
A
ALA
252
1
12
8
A
ASN
250
A
ASN
262
HELX_P
A
GLN
259
A
GLN
271
1
13
10
covale
1.325
both
A
ASP
11
A
C
ASP
23
1_555
A
MSE
12
A
N
MSE
24
1_555
covale
1.329
both
A
MSE
12
A
C
MSE
24
1_555
A
ASP
13
A
N
ASP
25
1_555
covale
1.330
both
A
ASN
60
A
C
ASN
72
1_555
A
MSE
61
A
N
MSE
73
1_555
covale
1.332
both
A
MSE
61
A
C
MSE
73
1_555
A
GLY
62
A
N
GLY
74
1_555
covale
1.331
both
A
HIS
80
A
C
HIS
92
1_555
A
MSE
81
A
N
MSE
93
1_555
covale
1.338
both
A
MSE
81
A
C
MSE
93
1_555
A
LEU
82
A
N
LEU
94
1_555
covale
1.336
both
A
ILE
165
A
C
ILE
177
1_555
A
MSE
166
A
N
MSE
178
1_555
covale
1.333
both
A
MSE
166
A
C
MSE
178
1_555
A
ALA
167
A
N
ALA
179
1_555
covale
1.336
both
A
ARG
202
A
C
ARG
214
1_555
A
MSE
203
A
N
MSE
215
1_555
covale
1.326
both
A
MSE
203
A
C
MSE
215
1_555
A
ALA
204
A
N
ALA
216
1_555
covale
1.327
both
A
ALA
204
A
C
ALA
216
1_555
A
MSE
205
A
N
MSE
217
1_555
covale
1.322
both
A
MSE
205
A
C
MSE
217
1_555
A
VAL
206
A
N
VAL
218
1_555
metalc
2.165
A
HIS
0
A
NE2
HIS
12
1_555
A
NI
260
B
NI
NI
1_555
metalc
2.135
A
HIS
80
A
NE2
HIS
92
3_645
A
NI
260
B
NI
NI
1_555
metalc
2.188
A
NI
260
B
NI
NI
1_555
A
CL
261
C
CL
CL
1_555
metalc
2.600
A
NI
260
B
NI
NI
1_555
A
CL
262
D
CL
CL
1_555
HYDROLASE
TM1742, 4-nitrophenylphosphatase, STRUCTURAL GENOMICS, JCSG, PSI, Protein Structure Initiative, Joint Center for Structural Genomics, HYDROLASE
A
LYS
183
A
LYS
195
1
A
PRO
184
A
PRO
196
3.57
Q9X264_THEMA
UNP
1
1
Q9X264
MLDKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDVPDDAVVTSGEITAEH
MLKRFGRCRIFLLGTPQLKKVFEAYGHVIDEENPDFVVLGFDKTLTYERLKKACILLRKGKFYIATHPDINCPSKEGPVP
DAGSIMAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERMAMVGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERA
ETKPDFVFKNLGELAKAVQ
1
259
1VJR
1
259
Q9X264
A
1
13
271
1
expression tag
MET
-11
1VJR
A
Q9X264
UNP
1
1
expression tag
GLY
-10
1VJR
A
Q9X264
UNP
2
1
expression tag
SER
-9
1VJR
A
Q9X264
UNP
3
1
expression tag
ASP
-8
1VJR
A
Q9X264
UNP
4
1
expression tag
LYS
-7
1VJR
A
Q9X264
UNP
5
1
expression tag
ILE
-6
1VJR
A
Q9X264
UNP
6
1
expression tag
HIS
-5
1VJR
A
Q9X264
UNP
7
1
expression tag
HIS
-4
1VJR
A
Q9X264
UNP
8
1
expression tag
HIS
-3
1VJR
A
Q9X264
UNP
9
1
expression tag
HIS
-2
1VJR
A
Q9X264
UNP
10
1
expression tag
HIS
-1
1VJR
A
Q9X264
UNP
11
1
expression tag
HIS
0
1VJR
A
Q9X264
UNP
12
1
MET
SEE REMARK 999
VAL
1
1VJR
A
Q9X264
UNP
1
13
1
MET
modified residue
MSE
12
1VJR
A
Q9X264
UNP
12
24
1
MET
modified residue
MSE
61
1VJR
A
Q9X264
UNP
61
73
1
MET
modified residue
MSE
81
1VJR
A
Q9X264
UNP
81
93
1
MET
modified residue
MSE
166
1VJR
A
Q9X264
UNP
166
178
1
MET
modified residue
MSE
203
1VJR
A
Q9X264
UNP
203
215
1
MET
modified residue
MSE
205
1VJR
A
Q9X264
UNP
205
217
6
2
5
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
A
VAL
70
A
VAL
82
A
THR
72
A
THR
84
A
ARG
39
A
ARG
51
A
THR
44
A
THR
56
A
LEU
7
A
LEU
19
A
LEU
10
A
LEU
22
A
MSE
203
A
MSE
215
A
GLY
207
A
GLY
219
A
VAL
223
A
VAL
235
A
VAL
227
A
VAL
239
A
PHE
246
A
PHE
258
A
PHE
248
A
PHE
260
A
TYR
17
A
TYR
29
A
LEU
18
A
LEU
30
A
SER
21
A
SER
33
A
LEU
22
A
LEU
34
A
VAL
108
A
VAL
120
A
ILE
109
A
ILE
121
A
ARG
89
A
ARG
101
A
LEU
93
A
LEU
105
A
PHE
116
A
PHE
128
A
LEU
119
A
LEU
131
A
PHE
142
A
PHE
154
A
ALA
145
A
ALA
157
A
LEU
179
A
LEU
191
A
ILE
180
A
ILE
192
A
ASN
151
A
ASN
163
A
CYS
152
A
CYS
164
A
VAL
159
A
VAL
171
A
PRO
160
A
PRO
172
BINDING SITE FOR RESIDUE NI A 260
A
NI
260
Software
4
BINDING SITE FOR RESIDUE CL A 261
A
CL
261
Software
2
BINDING SITE FOR RESIDUE CL A 262
A
CL
262
Software
2
A
HIS
0
A
HIS
12
4
1_555
A
HIS
80
A
HIS
92
4
3_645
A
CL
261
C
CL
4
1_555
A
CL
262
D
CL
4
1_555
A
HIS
0
A
HIS
12
2
1_555
A
NI
260
B
NI
2
1_555
A
HIS
80
A
HIS
92
2
3_645
A
NI
260
B
NI
2
1_555
92
P 41 21 2