0.012539
0.000000
0.000000
0.000000
0.012539
0.000000
0.000000
0.000000
0.010427
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
79.749
79.749
95.909
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
Li 1
6.941
LITHIUM ION
non-polymer
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
UNKNOWN LIGAND
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
LI
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
N
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
S
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
SE
N
245
N
C
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
Y
262
N
C
Y
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
O
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
R
C
N
299
N
O
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
N
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
N
349
N
O
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
N
367
N
C
N
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
Y
254
N
doub
Y
255
N
sing
Y
256
N
sing
N
257
N
sing
Y
258
N
doub
N
259
N
sing
Y
260
N
doub
N
261
N
sing
Y
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
Y
306
N
doub
Y
307
N
sing
Y
308
N
sing
N
309
N
sing
Y
310
N
doub
Y
311
N
sing
Y
312
N
sing
N
313
N
sing
Y
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
doub
N
341
N
sing
Y
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
To be published
0353
Crystal structure of MazG nucleotide pyrophosphohydrolase (13816655) from Sulfolobus solfataricus at 1.46 A resolution
10.2210/pdb1vmg/pdb
pdb_00001vmg
100
1
CCD
2004-09-18
ADSC
Double Crystal Si(111)
MAD
M
x-ray
1
0.979834
1.0
0.979694
1.0
1.020035
1.0
8.3.1
ALS
0.979834
0.979834,0.979694,1.020035
SYNCHROTRON
ALS BEAMLINE 8.3.1
11182.214
Hypothetical protein SSO3215
3.6.1.-
1
man
polymer
6.941
LITHIUM ION
1
syn
non-polymer
UNKNOWN LIGAND
1
syn
non-polymer
18.015
water
106
nat
water
no
yes
MGSDKIHHHHHH(MSE)DLELKELQSK(MSE)KE(MSE)YFEKDSQRGIYATFTWLVEEVGELAEALLSNNLDSIQEELA
DVIAWTVSIANLEGIDIEEALKKKYKL
MGSDKIHHHHHHMDLELKELQSKMKEMYFEKDSQRGIYATFTWLVEEVGELAEALLSNNLDSIQEELADVIAWTVSIANL
EGIDIEEALKKKYKL
A
358109
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Sulfolobus
Sulfolobus solfataricus
P2
Escherichia
sample
273057
Sulfolobus solfataricus
562
Escherichia coli
Plasmid
1
3.30
62.40
VAPOR DIFFUSION,SITTING DROP,NANODROP
7.5
1.5M Li2SO4, 0.1M HEPES pH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Advisory
Derived calculations
Source and taxonomy
Version format compliance
Data collection
Database references
Derived calculations
1
0
2004-10-05
1
1
2008-04-26
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2004-09-24
REL
REL
LI
LITHIUM ION
UNL
UNKNOWN LIGAND
HOH
water
LI
1
2
LI
LI
84
A
UNL
2
3
UNL
UNL
85
A
HOH
3
4
HOH
HOH
86
A
HOH
4
4
HOH
HOH
87
A
HOH
5
4
HOH
HOH
88
A
HOH
6
4
HOH
HOH
89
A
HOH
7
4
HOH
HOH
90
A
HOH
8
4
HOH
HOH
91
A
HOH
9
4
HOH
HOH
92
A
HOH
10
4
HOH
HOH
93
A
HOH
11
4
HOH
HOH
94
A
HOH
12
4
HOH
HOH
95
A
HOH
13
4
HOH
HOH
96
A
HOH
14
4
HOH
HOH
97
A
HOH
15
4
HOH
HOH
98
A
HOH
16
4
HOH
HOH
99
A
HOH
17
4
HOH
HOH
100
A
HOH
18
4
HOH
HOH
101
A
HOH
19
4
HOH
HOH
102
A
HOH
20
4
HOH
HOH
103
A
HOH
21
4
HOH
HOH
104
A
HOH
22
4
HOH
HOH
105
A
HOH
23
4
HOH
HOH
106
A
HOH
24
4
HOH
HOH
107
A
HOH
25
4
HOH
HOH
108
A
HOH
26
4
HOH
HOH
109
A
HOH
27
4
HOH
HOH
110
A
HOH
28
4
HOH
HOH
111
A
HOH
29
4
HOH
HOH
112
A
HOH
30
4
HOH
HOH
113
A
HOH
31
4
HOH
HOH
114
A
HOH
32
4
HOH
HOH
115
A
HOH
33
4
HOH
HOH
116
A
HOH
34
4
HOH
HOH
117
A
HOH
35
4
HOH
HOH
118
A
HOH
36
4
HOH
HOH
119
A
HOH
37
4
HOH
HOH
120
A
HOH
38
4
HOH
HOH
121
A
HOH
39
4
HOH
HOH
122
A
HOH
40
4
HOH
HOH
123
A
HOH
41
4
HOH
HOH
124
A
HOH
42
4
HOH
HOH
125
A
HOH
43
4
HOH
HOH
126
A
HOH
44
4
HOH
HOH
127
A
HOH
45
4
HOH
HOH
128
A
HOH
46
4
HOH
HOH
129
A
HOH
47
4
HOH
HOH
130
A
HOH
48
4
HOH
HOH
131
A
HOH
49
4
HOH
HOH
132
A
HOH
50
4
HOH
HOH
133
A
HOH
51
4
HOH
HOH
134
A
HOH
52
4
HOH
HOH
135
A
HOH
53
4
HOH
HOH
136
A
HOH
54
4
HOH
HOH
137
A
HOH
55
4
HOH
HOH
138
A
HOH
56
4
HOH
HOH
139
A
HOH
57
4
HOH
HOH
140
A
HOH
58
4
HOH
HOH
141
A
HOH
59
4
HOH
HOH
142
A
HOH
60
4
HOH
HOH
143
A
HOH
61
4
HOH
HOH
144
A
HOH
62
4
HOH
HOH
145
A
HOH
63
4
HOH
HOH
146
A
HOH
64
4
HOH
HOH
147
A
HOH
65
4
HOH
HOH
148
A
HOH
66
4
HOH
HOH
149
A
HOH
67
4
HOH
HOH
150
A
HOH
68
4
HOH
HOH
151
A
HOH
69
4
HOH
HOH
152
A
HOH
70
4
HOH
HOH
153
A
HOH
71
4
HOH
HOH
154
A
HOH
72
4
HOH
HOH
155
A
HOH
73
4
HOH
HOH
156
A
HOH
74
4
HOH
HOH
157
A
HOH
75
4
HOH
HOH
158
A
HOH
76
4
HOH
HOH
159
A
HOH
77
4
HOH
HOH
160
A
HOH
78
4
HOH
HOH
161
A
HOH
79
4
HOH
HOH
162
A
HOH
80
4
HOH
HOH
163
A
HOH
81
4
HOH
HOH
164
A
HOH
82
4
HOH
HOH
165
A
HOH
83
4
HOH
HOH
166
A
HOH
84
4
HOH
HOH
167
A
HOH
85
4
HOH
HOH
168
A
HOH
86
4
HOH
HOH
169
A
HOH
87
4
HOH
HOH
170
A
HOH
88
4
HOH
HOH
171
A
HOH
89
4
HOH
HOH
172
A
HOH
90
4
HOH
HOH
173
A
HOH
91
4
HOH
HOH
174
A
HOH
92
4
HOH
HOH
175
A
HOH
93
4
HOH
HOH
176
A
HOH
94
4
HOH
HOH
177
A
HOH
95
4
HOH
HOH
178
A
HOH
96
4
HOH
HOH
179
A
HOH
97
4
HOH
HOH
180
A
HOH
98
4
HOH
HOH
181
A
HOH
99
4
HOH
HOH
182
A
HOH
100
4
HOH
HOH
183
A
HOH
101
4
HOH
HOH
184
A
HOH
102
4
HOH
HOH
185
A
HOH
103
4
HOH
HOH
186
A
HOH
104
4
HOH
HOH
187
A
HOH
105
4
HOH
HOH
188
A
HOH
106
4
HOH
HOH
189
A
HOH
107
4
HOH
HOH
190
A
HOH
108
4
HOH
HOH
191
A
n
1
-11
A
n
2
-10
A
n
3
-9
A
n
4
-8
A
n
5
-7
A
n
6
-6
A
n
7
-5
A
n
8
-4
A
n
9
-3
A
n
10
-2
A
n
11
-1
A
n
12
0
A
MSE
1
n
13
MSE
1
A
ASP
2
n
14
ASP
2
A
LEU
3
n
15
LEU
3
A
GLU
4
n
16
GLU
4
A
LEU
5
n
17
LEU
5
A
LYS
6
n
18
LYS
6
A
GLU
7
n
19
GLU
7
A
LEU
8
n
20
LEU
8
A
GLN
9
n
21
GLN
9
A
SER
10
n
22
SER
10
A
LYS
11
n
23
LYS
11
A
MSE
12
n
24
MSE
12
A
LYS
13
n
25
LYS
13
A
GLU
14
n
26
GLU
14
A
MSE
15
n
27
MSE
15
A
TYR
16
n
28
TYR
16
A
PHE
17
n
29
PHE
17
A
GLU
18
n
30
GLU
18
A
LYS
19
n
31
LYS
19
A
ASP
20
n
32
ASP
20
A
SER
21
n
33
SER
21
A
GLN
22
n
34
GLN
22
A
ARG
23
n
35
ARG
23
A
GLY
24
n
36
GLY
24
A
ILE
25
n
37
ILE
25
A
TYR
26
n
38
TYR
26
A
ALA
27
n
39
ALA
27
A
THR
28
n
40
THR
28
A
PHE
29
n
41
PHE
29
A
THR
30
n
42
THR
30
A
TRP
31
n
43
TRP
31
A
LEU
32
n
44
LEU
32
A
VAL
33
n
45
VAL
33
A
GLU
34
n
46
GLU
34
A
GLU
35
n
47
GLU
35
A
VAL
36
n
48
VAL
36
A
GLY
37
n
49
GLY
37
A
GLU
38
n
50
GLU
38
A
LEU
39
n
51
LEU
39
A
ALA
40
n
52
ALA
40
A
GLU
41
n
53
GLU
41
A
ALA
42
n
54
ALA
42
A
LEU
43
n
55
LEU
43
A
LEU
44
n
56
LEU
44
A
SER
45
n
57
SER
45
A
ASN
46
n
58
ASN
46
A
ASN
47
n
59
ASN
47
A
LEU
48
n
60
LEU
48
A
ASP
49
n
61
ASP
49
A
SER
50
n
62
SER
50
A
ILE
51
n
63
ILE
51
A
GLN
52
n
64
GLN
52
A
GLU
53
n
65
GLU
53
A
GLU
54
n
66
GLU
54
A
LEU
55
n
67
LEU
55
A
ALA
56
n
68
ALA
56
A
ASP
57
n
69
ASP
57
A
VAL
58
n
70
VAL
58
A
ILE
59
n
71
ILE
59
A
ALA
60
n
72
ALA
60
A
TRP
61
n
73
TRP
61
A
THR
62
n
74
THR
62
A
VAL
63
n
75
VAL
63
A
SER
64
n
76
SER
64
A
ILE
65
n
77
ILE
65
A
ALA
66
n
78
ALA
66
A
ASN
67
n
79
ASN
67
A
LEU
68
n
80
LEU
68
A
GLU
69
n
81
GLU
69
A
GLY
70
n
82
GLY
70
A
ILE
71
n
83
ILE
71
A
ASP
72
n
84
ASP
72
A
ILE
73
n
85
ILE
73
A
GLU
74
n
86
GLU
74
A
GLU
75
n
87
GLU
75
A
ALA
76
n
88
ALA
76
A
LEU
77
n
89
LEU
77
A
LYS
78
n
90
LYS
78
A
LYS
79
n
91
LYS
79
A
LYS
80
n
92
LYS
80
A
TYR
81
n
93
TYR
81
A
LYS
82
n
94
LYS
82
A
LEU
83
n
95
LEU
83
A
0.4738
-0.2119
0.0800
0.7849
0.3208
0.5075
0.0045
0.0030
-0.0257
0.0682
-0.0261
0.0546
-0.0086
-0.0386
0.0216
-0.0081
0.0004
-0.0002
-0.0199
-0.0041
-0.0211
refined
68.5390
7.8450
3.9150
X-RAY DIFFRACTION
A
1
A
13
A
83
A
95
X-RAY DIFFRACTION
1
ALL
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA,PQS
4
tetrameric
5530
-47
7710
13600
-126
12880
A
GLU
35
A
OE1
GLU
47
1_555
A
LI
84
B
LI
LI
1_555
A
GLU
54
A
OE1
GLU
66
1_555
103.2
A
GLU
35
A
OE1
GLU
47
1_555
A
LI
84
B
LI
LI
1_555
A
ASP
57
A
OD2
ASP
69
1_555
100.8
A
GLU
54
A
OE1
GLU
66
1_555
A
LI
84
B
LI
LI
1_555
A
ASP
57
A
OD2
ASP
69
1_555
101.7
A
GLU
35
A
OE1
GLU
47
1_555
A
LI
84
B
LI
LI
1_555
A
HOH
108
D
O
HOH
1_555
121.1
A
GLU
54
A
OE1
GLU
66
1_555
A
LI
84
B
LI
LI
1_555
A
HOH
108
D
O
HOH
1_555
117.2
A
ASP
57
A
OD2
ASP
69
1_555
A
LI
84
B
LI
LI
1_555
A
HOH
108
D
O
HOH
1_555
110.0
A
MSE
1
SELENOMETHIONINE
A
MSE
13
MET
A
MSE
12
SELENOMETHIONINE
A
MSE
24
MET
A
MSE
15
SELENOMETHIONINE
A
MSE
27
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z
crystal symmetry operation
79.7490000000
79.7490000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
10_755
-x+2,-y,z
crystal symmetry operation
159.4980000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
15_645
y+1,x-1,-z
crystal symmetry operation
79.7490000000
-79.7490000000
0.0000000000
1
A
HOH
92
D
HOH
1
A
CG
MSE
1
A
CG
MSE
13
1
Y
1
A
CE
MSE
1
A
CE
MSE
13
1
Y
1
A
CD
GLU
7
A
CD
GLU
19
1
Y
1
A
OE1
GLU
7
A
OE1
GLU
19
1
Y
1
A
OE2
GLU
7
A
OE2
GLU
19
1
Y
1
A
CD
GLU
18
A
CD
GLU
30
1
Y
1
A
OE1
GLU
18
A
OE1
GLU
30
1
Y
1
A
OE2
GLU
18
A
OE2
GLU
30
1
Y
1
A
CD
LYS
19
A
CD
LYS
31
1
Y
1
A
CE
LYS
19
A
CE
LYS
31
1
Y
1
A
NZ
LYS
19
A
NZ
LYS
31
1
Y
1
A
CD
GLN
22
A
CD
GLN
34
1
Y
1
A
OE1
GLN
22
A
OE1
GLN
34
1
Y
1
A
NE2
GLN
22
A
NE2
GLN
34
1
Y
1
A
CD
LYS
82
A
CD
LYS
94
1
Y
1
A
CE
LYS
82
A
CE
LYS
94
1
Y
1
A
NZ
LYS
82
A
NZ
LYS
94
1
Y
1
A
MET
-11
A
MET
1
1
Y
1
A
GLY
-10
A
GLY
2
1
Y
1
A
SER
-9
A
SER
3
1
Y
1
A
ASP
-8
A
ASP
4
1
Y
1
A
LYS
-7
A
LYS
5
1
Y
1
A
ILE
-6
A
ILE
6
1
Y
1
A
HIS
-5
A
HIS
7
1
Y
1
A
HIS
-4
A
HIS
8
1
Y
1
A
HIS
-3
A
HIS
9
1
Y
1
A
HIS
-2
A
HIS
10
1
Y
1
A
HIS
-1
A
HIS
11
1
Y
1
A
HIS
0
A
HIS
12
1
Y
1
A
A
O
O
HOH
HOH
129
173
2.10
1
A
A
OE1
O
GLU
HOH
34
145
2.15
B
14.062
-0.19
0.00
0.00
-0.19
0.00
0.38
0.976
0.975
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2. AN UNKNOWN ENTITY BETWEEN TYR 16 AND TRP 61 WAS AS UNK, UNKNOWN LIGAND. THE DENSITY LOOKS SIMILAR TO A GUANINE BASE. 3. THERE ARE ADDITIONAL UNEXPLAINED DENSITIES NEAR ARG 23, TRP 31, TRP 61. IT MAY BE RELATED TO UNK, HOWEVER, DENSITY IS TOO FRAGMENTED TO IDENTIFY OR MODEL. 4. A LI ION WAS TENATIVELY MODELLED ACCORDING TO THE ENVIROMENT. AND ITS PRESENCE IN THE CRYSTALLIZATION BUFFER.
0.14633
0.14178
0.14201
1.46
25.62
1288
24059
5.1
93.34
1.453
0.027
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MAD
0.043
0.041
0.80
0.80
1.20
MAXIMUM LIKELIHOOD WITH PHASES
BABINET MODEL WITH MASK
1.46
25.62
106
771
10
0
655
0.012
0.022
715
0.001
0.020
695
1.235
1.988
971
0.800
3.000
1625
4.933
5.000
82
35.014
27.273
33
12.092
15.000
152
14.745
15.000
1
0.076
0.200
125
0.005
0.020
741
0.001
0.020
118
0.253
0.200
171
0.149
0.200
624
0.084
0.200
387
0.381
0.200
77
0.115
0.200
8
0.133
0.200
59
0.177
0.200
25
1.903
3.000
444
0.318
3.000
171
2.371
5.000
708
4.279
8.000
320
5.367
11.000
263
0.183
0.200
360
0.204
0.200
3
0.276
0.256
1.498
37
656
20
5.34
35.07
23.08
1.460
25.62
1VMG
25360
0.044
1
19.6
5.9
93.3
1.46
1.54
2.2
2241
0.435
1
2.0
57.6
data scaling
XDS
data scaling
SCALA
4.2)
model building
SHELX
phasing
autoSHARP
refinement
REFMAC
(5.2.0005)
data reduction
XDS
data scaling
CCP4
(SCALA)
phasing
SHELX
Crystal structure of MazG nucleotide pyrophosphohydrolase (13816655) from Sulfolobus solfataricus at 1.46 A resolution
1
N
N
2
N
N
3
N
N
4
N
N
A
GLU
4
A
GLU
16
HELX_P
A
GLY
24
A
GLY
36
1
1
21
A
GLY
24
A
GLY
36
HELX_P
A
ASN
46
A
ASN
58
1
2
23
A
ASN
47
A
ASN
59
HELX_P
A
GLY
70
A
GLY
82
1
3
24
A
ASP
72
A
ASP
84
HELX_P
A
TYR
81
A
TYR
93
1
4
10
covale
1.333
both
A
MSE
1
A
C
MSE
13
1_555
A
ASP
2
A
N
ASP
14
1_555
covale
1.325
both
A
LYS
11
A
C
LYS
23
1_555
A
MSE
12
A
N
MSE
24
1_555
covale
1.328
both
A
MSE
12
A
C
MSE
24
1_555
A
LYS
13
A
N
LYS
25
1_555
covale
1.322
both
A
GLU
14
A
C
GLU
26
1_555
A
MSE
15
A
N
MSE
27
1_555
covale
1.332
both
A
MSE
15
A
C
MSE
27
1_555
A
TYR
16
A
N
TYR
28
1_555
metalc
1.901
A
GLU
35
A
OE1
GLU
47
1_555
A
LI
84
B
LI
LI
1_555
metalc
1.988
A
GLU
54
A
OE1
GLU
66
1_555
A
LI
84
B
LI
LI
1_555
metalc
2.116
A
ASP
57
A
OD2
ASP
69
1_555
A
LI
84
B
LI
LI
1_555
metalc
1.674
A
LI
84
B
LI
LI
1_555
A
HOH
108
D
O
HOH
1_555
HYDROLASE
13816655, MazG nucleotide pyrophosphohydrolase, Structural Genomics, JCSG, Protein Structure Initiative, PSI, Joint Center for Structural Genomics, Hydrolase
Q97U11_SULSO
UNP
1
1
Q97U11
MDLELKELQSKMKEMYFEKDSQRGIYATFTWLVEEVGELAEALLSNNLDSIQEELADVIAWTVSIANLEGIDIEEALKKK
YKL
1
83
1VMG
-11
83
Q97U11
A
1
1
95
1
cloning artifact
GLY
-10
1VMG
A
Q97U11
UNP
2
1
cloning artifact
SER
-9
1VMG
A
Q97U11
UNP
3
1
cloning artifact
ASP
-8
1VMG
A
Q97U11
UNP
4
1
cloning artifact
LYS
-7
1VMG
A
Q97U11
UNP
5
1
cloning artifact
ILE
-6
1VMG
A
Q97U11
UNP
6
1
cloning artifact
HIS
-5
1VMG
A
Q97U11
UNP
7
1
cloning artifact
HIS
-4
1VMG
A
Q97U11
UNP
8
1
cloning artifact
HIS
-3
1VMG
A
Q97U11
UNP
9
1
cloning artifact
HIS
-2
1VMG
A
Q97U11
UNP
10
1
cloning artifact
HIS
-1
1VMG
A
Q97U11
UNP
11
1
cloning artifact
HIS
0
1VMG
A
Q97U11
UNP
12
1
MET
modified residue
MSE
1
1VMG
A
Q97U11
UNP
1
13
1
MET
modified residue
MSE
12
1VMG
A
Q97U11
UNP
12
24
1
MET
modified residue
MSE
15
1VMG
A
Q97U11
UNP
15
27
BINDING SITE FOR RESIDUE LI A 84
A
LI
84
Software
4
BINDING SITE FOR RESIDUE UNL A 85
A
UNL
85
Software
9
A
GLU
35
A
GLU
47
4
1_555
A
GLU
54
A
GLU
66
4
1_555
A
ASP
57
A
ASP
69
4
1_555
A
HOH
108
D
HOH
4
1_555
A
TYR
16
A
TYR
28
9
1_555
A
ASP
20
A
ASP
32
9
1_555
A
ARG
23
A
ARG
35
9
1_555
A
ALA
60
A
ALA
72
9
1_555
A
TRP
61
A
TRP
73
9
1_555
A
SER
64
A
SER
76
9
1_555
A
TYR
81
A
TYR
93
9
8_665
A
HOH
88
D
HOH
9
1_555
A
HOH
175
D
HOH
9
1_555
98
I 41 2 2