0.017797
0.000000
0.000000
0.000000
0.016720
0.000000
0.000000
0.000000
0.012900
0.00000
0.00000
0.00000
Muller, Y.A.
De Vos, A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
56.190
59.810
77.520
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
94
7192
7197
10.1073/pnas.94.14.7192
9207067
Vascular endothelial growth factor: crystal structure and functional mapping of the kinase domain receptor binding site.
1997
US
Proteins
PSFGEY
0867
0887-3585
26
353
Crystallization of the Receptor Binding Domain of Vascular Endothelial Growth Factor
1996
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
COLLIMATOR
IMAGE PLATE
1995-12
MARRESEARCH
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
11948.680
VASCULAR ENDOTHELIAL GROWTH FACTOR
RECEPTOR BINDING DOMAIN, RESIDUES 8 - 109
4
man
polymer
18.015
water
191
nat
water
VEGF, VASCULAR PERMEABILITY FACTOR, VPF
no
no
GQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQ
GQHIGEMSFLQHNKCECRPKKD
GQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQ
GQHIGEMSFLQHNKCECRPKKD
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
1
2.7
54.
5.6
pH 5.6
repository
Initial release
Version format compliance
Version format compliance
1
0
1998-04-08
1
1
2008-03-24
1
2
2011-07-13
Y
BNL
1997-04-08
REL
REL
HOH
water
HOH
1
2
HOH
HOH
110
A
HOH
2
2
HOH
HOH
111
A
HOH
3
2
HOH
HOH
112
A
HOH
5
2
HOH
HOH
113
A
HOH
6
2
HOH
HOH
114
A
HOH
10
2
HOH
HOH
115
A
HOH
16
2
HOH
HOH
116
A
HOH
19
2
HOH
HOH
117
A
HOH
25
2
HOH
HOH
118
A
HOH
26
2
HOH
HOH
119
A
HOH
30
2
HOH
HOH
120
A
HOH
35
2
HOH
HOH
121
A
HOH
39
2
HOH
HOH
122
A
HOH
40
2
HOH
HOH
123
A
HOH
48
2
HOH
HOH
124
A
HOH
50
2
HOH
HOH
125
A
HOH
52
2
HOH
HOH
126
A
HOH
55
2
HOH
HOH
127
A
HOH
56
2
HOH
HOH
128
A
HOH
61
2
HOH
HOH
129
A
HOH
62
2
HOH
HOH
130
A
HOH
67
2
HOH
HOH
131
A
HOH
79
2
HOH
HOH
132
A
HOH
81
2
HOH
HOH
133
A
HOH
85
2
HOH
HOH
134
A
HOH
86
2
HOH
HOH
135
A
HOH
87
2
HOH
HOH
136
A
HOH
90
2
HOH
HOH
137
A
HOH
91
2
HOH
HOH
138
A
HOH
94
2
HOH
HOH
139
A
HOH
95
2
HOH
HOH
140
A
HOH
97
2
HOH
HOH
141
A
HOH
108
2
HOH
HOH
142
A
HOH
109
2
HOH
HOH
143
A
HOH
112
2
HOH
HOH
144
A
HOH
113
2
HOH
HOH
145
A
HOH
114
2
HOH
HOH
146
A
HOH
116
2
HOH
HOH
147
A
HOH
120
2
HOH
HOH
148
A
HOH
125
2
HOH
HOH
149
A
HOH
131
2
HOH
HOH
150
A
HOH
134
2
HOH
HOH
151
A
HOH
138
2
HOH
HOH
152
A
HOH
139
2
HOH
HOH
153
A
HOH
143
2
HOH
HOH
154
A
HOH
146
2
HOH
HOH
155
A
HOH
151
2
HOH
HOH
156
A
HOH
163
2
HOH
HOH
157
A
HOH
165
2
HOH
HOH
158
A
HOH
182
2
HOH
HOH
159
A
HOH
183
2
HOH
HOH
160
A
HOH
187
2
HOH
HOH
161
A
HOH
189
2
HOH
HOH
162
A
HOH
191
2
HOH
HOH
163
A
HOH
12
2
HOH
HOH
110
B
HOH
20
2
HOH
HOH
111
B
HOH
22
2
HOH
HOH
112
B
HOH
24
2
HOH
HOH
113
B
HOH
31
2
HOH
HOH
114
B
HOH
32
2
HOH
HOH
115
B
HOH
34
2
HOH
HOH
116
B
HOH
36
2
HOH
HOH
117
B
HOH
37
2
HOH
HOH
118
B
HOH
41
2
HOH
HOH
119
B
HOH
43
2
HOH
HOH
120
B
HOH
44
2
HOH
HOH
121
B
HOH
54
2
HOH
HOH
122
B
HOH
58
2
HOH
HOH
123
B
HOH
60
2
HOH
HOH
124
B
HOH
70
2
HOH
HOH
125
B
HOH
73
2
HOH
HOH
126
B
HOH
77
2
HOH
HOH
127
B
HOH
84
2
HOH
HOH
128
B
HOH
101
2
HOH
HOH
129
B
HOH
103
2
HOH
HOH
130
B
HOH
111
2
HOH
HOH
131
B
HOH
126
2
HOH
HOH
132
B
HOH
128
2
HOH
HOH
133
B
HOH
135
2
HOH
HOH
134
B
HOH
137
2
HOH
HOH
135
B
HOH
145
2
HOH
HOH
136
B
HOH
148
2
HOH
HOH
137
B
HOH
150
2
HOH
HOH
138
B
HOH
152
2
HOH
HOH
139
B
HOH
153
2
HOH
HOH
140
B
HOH
156
2
HOH
HOH
141
B
HOH
157
2
HOH
HOH
142
B
HOH
158
2
HOH
HOH
143
B
HOH
162
2
HOH
HOH
144
B
HOH
166
2
HOH
HOH
145
B
HOH
176
2
HOH
HOH
146
B
HOH
177
2
HOH
HOH
147
B
HOH
186
2
HOH
HOH
148
B
HOH
4
2
HOH
HOH
110
C
HOH
7
2
HOH
HOH
111
C
HOH
9
2
HOH
HOH
112
C
HOH
13
2
HOH
HOH
113
C
HOH
15
2
HOH
HOH
114
C
HOH
17
2
HOH
HOH
115
C
HOH
18
2
HOH
HOH
116
C
HOH
21
2
HOH
HOH
117
C
HOH
23
2
HOH
HOH
118
C
HOH
27
2
HOH
HOH
119
C
HOH
28
2
HOH
HOH
120
C
HOH
38
2
HOH
HOH
121
C
HOH
45
2
HOH
HOH
122
C
HOH
46
2
HOH
HOH
123
C
HOH
47
2
HOH
HOH
124
C
HOH
59
2
HOH
HOH
125
C
HOH
63
2
HOH
HOH
126
C
HOH
64
2
HOH
HOH
127
C
HOH
65
2
HOH
HOH
128
C
HOH
66
2
HOH
HOH
129
C
HOH
68
2
HOH
HOH
130
C
HOH
71
2
HOH
HOH
131
C
HOH
72
2
HOH
HOH
132
C
HOH
76
2
HOH
HOH
133
C
HOH
83
2
HOH
HOH
134
C
HOH
92
2
HOH
HOH
135
C
HOH
96
2
HOH
HOH
136
C
HOH
98
2
HOH
HOH
137
C
HOH
102
2
HOH
HOH
138
C
HOH
110
2
HOH
HOH
139
C
HOH
115
2
HOH
HOH
140
C
HOH
122
2
HOH
HOH
141
C
HOH
123
2
HOH
HOH
142
C
HOH
124
2
HOH
HOH
143
C
HOH
130
2
HOH
HOH
144
C
HOH
133
2
HOH
HOH
145
C
HOH
136
2
HOH
HOH
146
C
HOH
142
2
HOH
HOH
147
C
HOH
144
2
HOH
HOH
148
C
HOH
167
2
HOH
HOH
149
C
HOH
169
2
HOH
HOH
150
C
HOH
171
2
HOH
HOH
151
C
HOH
172
2
HOH
HOH
152
C
HOH
173
2
HOH
HOH
153
C
HOH
174
2
HOH
HOH
154
C
HOH
175
2
HOH
HOH
155
C
HOH
180
2
HOH
HOH
156
C
HOH
188
2
HOH
HOH
157
C
HOH
190
2
HOH
HOH
158
C
HOH
8
2
HOH
HOH
110
D
HOH
11
2
HOH
HOH
111
D
HOH
14
2
HOH
HOH
112
D
HOH
29
2
HOH
HOH
113
D
HOH
33
2
HOH
HOH
114
D
HOH
42
2
HOH
HOH
115
D
HOH
49
2
HOH
HOH
116
D
HOH
51
2
HOH
HOH
117
D
HOH
53
2
HOH
HOH
118
D
HOH
57
2
HOH
HOH
119
D
HOH
69
2
HOH
HOH
120
D
HOH
74
2
HOH
HOH
121
D
HOH
75
2
HOH
HOH
122
D
HOH
78
2
HOH
HOH
123
D
HOH
80
2
HOH
HOH
124
D
HOH
82
2
HOH
HOH
125
D
HOH
88
2
HOH
HOH
126
D
HOH
89
2
HOH
HOH
127
D
HOH
93
2
HOH
HOH
128
D
HOH
99
2
HOH
HOH
129
D
HOH
100
2
HOH
HOH
130
D
HOH
104
2
HOH
HOH
131
D
HOH
105
2
HOH
HOH
132
D
HOH
106
2
HOH
HOH
133
D
HOH
107
2
HOH
HOH
134
D
HOH
117
2
HOH
HOH
135
D
HOH
118
2
HOH
HOH
136
D
HOH
119
2
HOH
HOH
137
D
HOH
121
2
HOH
HOH
138
D
HOH
127
2
HOH
HOH
139
D
HOH
129
2
HOH
HOH
140
D
HOH
132
2
HOH
HOH
141
D
HOH
140
2
HOH
HOH
142
D
HOH
141
2
HOH
HOH
143
D
HOH
147
2
HOH
HOH
144
D
HOH
149
2
HOH
HOH
145
D
HOH
154
2
HOH
HOH
146
D
HOH
155
2
HOH
HOH
147
D
HOH
159
2
HOH
HOH
148
D
HOH
160
2
HOH
HOH
149
D
HOH
161
2
HOH
HOH
150
D
HOH
164
2
HOH
HOH
151
D
HOH
168
2
HOH
HOH
152
D
HOH
170
2
HOH
HOH
153
D
HOH
178
2
HOH
HOH
154
D
HOH
179
2
HOH
HOH
155
D
HOH
181
2
HOH
HOH
156
D
HOH
184
2
HOH
HOH
157
D
HOH
185
2
HOH
HOH
158
D
n
1
8
A
n
2
9
A
n
3
10
A
n
4
11
A
n
5
12
A
n
6
13
A
VAL
14
n
7
VAL
14
A
VAL
15
n
8
VAL
15
A
LYS
16
n
9
LYS
16
A
PHE
17
n
10
PHE
17
A
MET
18
n
11
MET
18
A
ASP
19
n
12
ASP
19
A
VAL
20
n
13
VAL
20
A
TYR
21
n
14
TYR
21
A
GLN
22
n
15
GLN
22
A
ARG
23
n
16
ARG
23
A
SER
24
n
17
SER
24
A
TYR
25
n
18
TYR
25
A
CYS
26
n
19
CYS
26
A
HIS
27
n
20
HIS
27
A
PRO
28
n
21
PRO
28
A
ILE
29
n
22
ILE
29
A
GLU
30
n
23
GLU
30
A
THR
31
n
24
THR
31
A
LEU
32
n
25
LEU
32
A
VAL
33
n
26
VAL
33
A
ASP
34
n
27
ASP
34
A
ILE
35
n
28
ILE
35
A
PHE
36
n
29
PHE
36
A
GLN
37
n
30
GLN
37
A
GLU
38
n
31
GLU
38
A
TYR
39
n
32
TYR
39
A
PRO
40
n
33
PRO
40
A
ASP
41
n
34
ASP
41
A
GLU
42
n
35
GLU
42
A
ILE
43
n
36
ILE
43
A
GLU
44
n
37
GLU
44
A
TYR
45
n
38
TYR
45
A
ILE
46
n
39
ILE
46
A
PHE
47
n
40
PHE
47
A
LYS
48
n
41
LYS
48
A
PRO
49
n
42
PRO
49
A
SER
50
n
43
SER
50
A
CYS
51
n
44
CYS
51
A
VAL
52
n
45
VAL
52
A
PRO
53
n
46
PRO
53
A
LEU
54
n
47
LEU
54
A
MET
55
n
48
MET
55
A
ARG
56
n
49
ARG
56
A
CYS
57
n
50
CYS
57
A
GLY
58
n
51
GLY
58
A
GLY
59
n
52
GLY
59
A
CYS
60
n
53
CYS
60
A
CYS
61
n
54
CYS
61
A
ASN
62
n
55
ASN
62
A
ASP
63
n
56
ASP
63
A
GLU
64
n
57
GLU
64
A
GLY
65
n
58
GLY
65
A
LEU
66
n
59
LEU
66
A
GLU
67
n
60
GLU
67
A
CYS
68
n
61
CYS
68
A
VAL
69
n
62
VAL
69
A
PRO
70
n
63
PRO
70
A
THR
71
n
64
THR
71
A
GLU
72
n
65
GLU
72
A
GLU
73
n
66
GLU
73
A
SER
74
n
67
SER
74
A
ASN
75
n
68
ASN
75
A
ILE
76
n
69
ILE
76
A
THR
77
n
70
THR
77
A
MET
78
n
71
MET
78
A
GLN
79
n
72
GLN
79
A
ILE
80
n
73
ILE
80
A
MET
81
n
74
MET
81
A
ARG
82
n
75
ARG
82
A
ILE
83
n
76
ILE
83
A
LYS
84
n
77
LYS
84
A
PRO
85
n
78
PRO
85
A
HIS
86
n
79
HIS
86
A
GLN
87
n
80
GLN
87
A
GLY
88
n
81
GLY
88
A
GLN
89
n
82
GLN
89
A
HIS
90
n
83
HIS
90
A
ILE
91
n
84
ILE
91
A
GLY
92
n
85
GLY
92
A
GLU
93
n
86
GLU
93
A
MET
94
n
87
MET
94
A
SER
95
n
88
SER
95
A
PHE
96
n
89
PHE
96
A
LEU
97
n
90
LEU
97
A
GLN
98
n
91
GLN
98
A
HIS
99
n
92
HIS
99
A
ASN
100
n
93
ASN
100
A
LYS
101
n
94
LYS
101
A
CYS
102
n
95
CYS
102
A
GLU
103
n
96
GLU
103
A
CYS
104
n
97
CYS
104
A
ARG
105
n
98
ARG
105
A
PRO
106
n
99
PRO
106
A
LYS
107
n
100
LYS
107
A
n
101
108
A
n
102
109
A
n
1
8
B
n
2
9
B
n
3
10
B
n
4
11
B
n
5
12
B
n
6
13
B
VAL
14
n
7
VAL
14
B
VAL
15
n
8
VAL
15
B
LYS
16
n
9
LYS
16
B
PHE
17
n
10
PHE
17
B
MET
18
n
11
MET
18
B
ASP
19
n
12
ASP
19
B
VAL
20
n
13
VAL
20
B
TYR
21
n
14
TYR
21
B
GLN
22
n
15
GLN
22
B
ARG
23
n
16
ARG
23
B
SER
24
n
17
SER
24
B
TYR
25
n
18
TYR
25
B
CYS
26
n
19
CYS
26
B
HIS
27
n
20
HIS
27
B
PRO
28
n
21
PRO
28
B
ILE
29
n
22
ILE
29
B
GLU
30
n
23
GLU
30
B
THR
31
n
24
THR
31
B
LEU
32
n
25
LEU
32
B
VAL
33
n
26
VAL
33
B
ASP
34
n
27
ASP
34
B
ILE
35
n
28
ILE
35
B
PHE
36
n
29
PHE
36
B
GLN
37
n
30
GLN
37
B
GLU
38
n
31
GLU
38
B
TYR
39
n
32
TYR
39
B
PRO
40
n
33
PRO
40
B
ASP
41
n
34
ASP
41
B
GLU
42
n
35
GLU
42
B
ILE
43
n
36
ILE
43
B
GLU
44
n
37
GLU
44
B
TYR
45
n
38
TYR
45
B
ILE
46
n
39
ILE
46
B
PHE
47
n
40
PHE
47
B
LYS
48
n
41
LYS
48
B
PRO
49
n
42
PRO
49
B
SER
50
n
43
SER
50
B
CYS
51
n
44
CYS
51
B
VAL
52
n
45
VAL
52
B
PRO
53
n
46
PRO
53
B
LEU
54
n
47
LEU
54
B
MET
55
n
48
MET
55
B
ARG
56
n
49
ARG
56
B
CYS
57
n
50
CYS
57
B
GLY
58
n
51
GLY
58
B
GLY
59
n
52
GLY
59
B
CYS
60
n
53
CYS
60
B
CYS
61
n
54
CYS
61
B
ASN
62
n
55
ASN
62
B
ASP
63
n
56
ASP
63
B
GLU
64
n
57
GLU
64
B
GLY
65
n
58
GLY
65
B
LEU
66
n
59
LEU
66
B
GLU
67
n
60
GLU
67
B
CYS
68
n
61
CYS
68
B
VAL
69
n
62
VAL
69
B
PRO
70
n
63
PRO
70
B
THR
71
n
64
THR
71
B
GLU
72
n
65
GLU
72
B
GLU
73
n
66
GLU
73
B
SER
74
n
67
SER
74
B
ASN
75
n
68
ASN
75
B
ILE
76
n
69
ILE
76
B
THR
77
n
70
THR
77
B
MET
78
n
71
MET
78
B
GLN
79
n
72
GLN
79
B
ILE
80
n
73
ILE
80
B
MET
81
n
74
MET
81
B
ARG
82
n
75
ARG
82
B
ILE
83
n
76
ILE
83
B
LYS
84
n
77
LYS
84
B
PRO
85
n
78
PRO
85
B
HIS
86
n
79
HIS
86
B
GLN
87
n
80
GLN
87
B
GLY
88
n
81
GLY
88
B
GLN
89
n
82
GLN
89
B
HIS
90
n
83
HIS
90
B
ILE
91
n
84
ILE
91
B
GLY
92
n
85
GLY
92
B
GLU
93
n
86
GLU
93
B
MET
94
n
87
MET
94
B
SER
95
n
88
SER
95
B
PHE
96
n
89
PHE
96
B
LEU
97
n
90
LEU
97
B
GLN
98
n
91
GLN
98
B
HIS
99
n
92
HIS
99
B
ASN
100
n
93
ASN
100
B
LYS
101
n
94
LYS
101
B
CYS
102
n
95
CYS
102
B
GLU
103
n
96
GLU
103
B
CYS
104
n
97
CYS
104
B
ARG
105
n
98
ARG
105
B
PRO
106
n
99
PRO
106
B
LYS
107
n
100
LYS
107
B
n
101
108
B
n
102
109
B
n
1
8
C
n
2
9
C
n
3
10
C
n
4
11
C
n
5
12
C
n
6
13
C
VAL
14
n
7
VAL
14
C
VAL
15
n
8
VAL
15
C
LYS
16
n
9
LYS
16
C
PHE
17
n
10
PHE
17
C
MET
18
n
11
MET
18
C
ASP
19
n
12
ASP
19
C
VAL
20
n
13
VAL
20
C
TYR
21
n
14
TYR
21
C
GLN
22
n
15
GLN
22
C
ARG
23
n
16
ARG
23
C
SER
24
n
17
SER
24
C
TYR
25
n
18
TYR
25
C
CYS
26
n
19
CYS
26
C
HIS
27
n
20
HIS
27
C
PRO
28
n
21
PRO
28
C
ILE
29
n
22
ILE
29
C
GLU
30
n
23
GLU
30
C
THR
31
n
24
THR
31
C
LEU
32
n
25
LEU
32
C
VAL
33
n
26
VAL
33
C
ASP
34
n
27
ASP
34
C
ILE
35
n
28
ILE
35
C
PHE
36
n
29
PHE
36
C
GLN
37
n
30
GLN
37
C
GLU
38
n
31
GLU
38
C
TYR
39
n
32
TYR
39
C
PRO
40
n
33
PRO
40
C
ASP
41
n
34
ASP
41
C
GLU
42
n
35
GLU
42
C
ILE
43
n
36
ILE
43
C
GLU
44
n
37
GLU
44
C
TYR
45
n
38
TYR
45
C
ILE
46
n
39
ILE
46
C
PHE
47
n
40
PHE
47
C
LYS
48
n
41
LYS
48
C
PRO
49
n
42
PRO
49
C
SER
50
n
43
SER
50
C
CYS
51
n
44
CYS
51
C
VAL
52
n
45
VAL
52
C
PRO
53
n
46
PRO
53
C
LEU
54
n
47
LEU
54
C
MET
55
n
48
MET
55
C
ARG
56
n
49
ARG
56
C
CYS
57
n
50
CYS
57
C
GLY
58
n
51
GLY
58
C
GLY
59
n
52
GLY
59
C
CYS
60
n
53
CYS
60
C
CYS
61
n
54
CYS
61
C
ASN
62
n
55
ASN
62
C
ASP
63
n
56
ASP
63
C
GLU
64
n
57
GLU
64
C
GLY
65
n
58
GLY
65
C
LEU
66
n
59
LEU
66
C
GLU
67
n
60
GLU
67
C
CYS
68
n
61
CYS
68
C
VAL
69
n
62
VAL
69
C
PRO
70
n
63
PRO
70
C
THR
71
n
64
THR
71
C
GLU
72
n
65
GLU
72
C
GLU
73
n
66
GLU
73
C
SER
74
n
67
SER
74
C
ASN
75
n
68
ASN
75
C
ILE
76
n
69
ILE
76
C
THR
77
n
70
THR
77
C
MET
78
n
71
MET
78
C
GLN
79
n
72
GLN
79
C
ILE
80
n
73
ILE
80
C
MET
81
n
74
MET
81
C
ARG
82
n
75
ARG
82
C
ILE
83
n
76
ILE
83
C
LYS
84
n
77
LYS
84
C
PRO
85
n
78
PRO
85
C
HIS
86
n
79
HIS
86
C
GLN
87
n
80
GLN
87
C
GLY
88
n
81
GLY
88
C
GLN
89
n
82
GLN
89
C
HIS
90
n
83
HIS
90
C
ILE
91
n
84
ILE
91
C
GLY
92
n
85
GLY
92
C
GLU
93
n
86
GLU
93
C
MET
94
n
87
MET
94
C
SER
95
n
88
SER
95
C
PHE
96
n
89
PHE
96
C
LEU
97
n
90
LEU
97
C
GLN
98
n
91
GLN
98
C
HIS
99
n
92
HIS
99
C
ASN
100
n
93
ASN
100
C
LYS
101
n
94
LYS
101
C
CYS
102
n
95
CYS
102
C
GLU
103
n
96
GLU
103
C
CYS
104
n
97
CYS
104
C
ARG
105
n
98
ARG
105
C
PRO
106
n
99
PRO
106
C
LYS
107
n
100
LYS
107
C
n
101
108
C
n
102
109
C
n
1
8
D
n
2
9
D
n
3
10
D
n
4
11
D
n
5
12
D
n
6
13
D
VAL
14
n
7
VAL
14
D
VAL
15
n
8
VAL
15
D
LYS
16
n
9
LYS
16
D
PHE
17
n
10
PHE
17
D
MET
18
n
11
MET
18
D
ASP
19
n
12
ASP
19
D
VAL
20
n
13
VAL
20
D
TYR
21
n
14
TYR
21
D
GLN
22
n
15
GLN
22
D
ARG
23
n
16
ARG
23
D
SER
24
n
17
SER
24
D
TYR
25
n
18
TYR
25
D
CYS
26
n
19
CYS
26
D
HIS
27
n
20
HIS
27
D
PRO
28
n
21
PRO
28
D
ILE
29
n
22
ILE
29
D
GLU
30
n
23
GLU
30
D
THR
31
n
24
THR
31
D
LEU
32
n
25
LEU
32
D
VAL
33
n
26
VAL
33
D
ASP
34
n
27
ASP
34
D
ILE
35
n
28
ILE
35
D
PHE
36
n
29
PHE
36
D
GLN
37
n
30
GLN
37
D
GLU
38
n
31
GLU
38
D
TYR
39
n
32
TYR
39
D
PRO
40
n
33
PRO
40
D
ASP
41
n
34
ASP
41
D
GLU
42
n
35
GLU
42
D
ILE
43
n
36
ILE
43
D
GLU
44
n
37
GLU
44
D
TYR
45
n
38
TYR
45
D
ILE
46
n
39
ILE
46
D
PHE
47
n
40
PHE
47
D
LYS
48
n
41
LYS
48
D
PRO
49
n
42
PRO
49
D
SER
50
n
43
SER
50
D
CYS
51
n
44
CYS
51
D
VAL
52
n
45
VAL
52
D
PRO
53
n
46
PRO
53
D
LEU
54
n
47
LEU
54
D
MET
55
n
48
MET
55
D
ARG
56
n
49
ARG
56
D
CYS
57
n
50
CYS
57
D
GLY
58
n
51
GLY
58
D
GLY
59
n
52
GLY
59
D
CYS
60
n
53
CYS
60
D
CYS
61
n
54
CYS
61
D
ASN
62
n
55
ASN
62
D
ASP
63
n
56
ASP
63
D
GLU
64
n
57
GLU
64
D
GLY
65
n
58
GLY
65
D
LEU
66
n
59
LEU
66
D
GLU
67
n
60
GLU
67
D
CYS
68
n
61
CYS
68
D
VAL
69
n
62
VAL
69
D
PRO
70
n
63
PRO
70
D
THR
71
n
64
THR
71
D
GLU
72
n
65
GLU
72
D
GLU
73
n
66
GLU
73
D
SER
74
n
67
SER
74
D
ASN
75
n
68
ASN
75
D
ILE
76
n
69
ILE
76
D
THR
77
n
70
THR
77
D
MET
78
n
71
MET
78
D
GLN
79
n
72
GLN
79
D
ILE
80
n
73
ILE
80
D
MET
81
n
74
MET
81
D
ARG
82
n
75
ARG
82
D
ILE
83
n
76
ILE
83
D
LYS
84
n
77
LYS
84
D
PRO
85
n
78
PRO
85
D
HIS
86
n
79
HIS
86
D
GLN
87
n
80
GLN
87
D
GLY
88
n
81
GLY
88
D
GLN
89
n
82
GLN
89
D
HIS
90
n
83
HIS
90
D
ILE
91
n
84
ILE
91
D
GLY
92
n
85
GLY
92
D
GLU
93
n
86
GLU
93
D
MET
94
n
87
MET
94
D
SER
95
n
88
SER
95
D
PHE
96
n
89
PHE
96
D
LEU
97
n
90
LEU
97
D
GLN
98
n
91
GLN
98
D
HIS
99
n
92
HIS
99
D
ASN
100
n
93
ASN
100
D
LYS
101
n
94
LYS
101
D
CYS
102
n
95
CYS
102
D
GLU
103
n
96
GLU
103
D
CYS
104
n
97
CYS
104
D
ARG
105
n
98
ARG
105
D
PRO
106
n
99
PRO
106
D
LYS
107
n
100
LYS
107
D
n
101
108
D
n
102
109
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
2710
-25
10790
2720
-24
10730
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
HIS
27
A
O
HIS
20
A
N
GLY
58
A
N
GLY
51
A
O
SER
74
A
O
SER
67
A
N
GLN
98
A
N
GLN
91
B
O
HIS
27
B
O
HIS
20
B
N
GLY
58
B
N
GLY
51
B
O
ILE
46
B
O
ILE
39
B
N
ILE
83
B
N
ILE
76
B
O
SER
74
B
O
SER
67
B
N
GLN
98
B
N
GLN
91
C
O
HIS
27
C
O
HIS
20
C
N
GLY
58
C
N
GLY
51
C
O
ILE
46
C
O
ILE
39
C
N
ILE
83
C
N
ILE
76
C
O
SER
74
C
O
SER
67
C
N
GLN
98
C
N
GLN
91
D
O
HIS
27
D
O
HIS
20
D
N
GLY
58
D
N
GLY
51
D
O
ILE
46
D
O
ILE
39
D
N
ILE
83
D
N
ILE
76
D
O
SER
74
D
O
SER
67
D
N
GLN
98
D
N
GLN
91
A
O
GLU
67
A
O
GLU
60
A
N
ARG
105
A
N
ARG
98
B
O
GLU
67
B
O
GLU
60
B
N
ARG
105
B
N
ARG
98
C
O
GLU
67
C
O
GLU
60
C
N
ARG
105
C
N
ARG
98
D
O
GLU
67
D
O
GLU
60
D
N
ARG
105
D
N
ARG
98
1
A
GLY
8
A
GLY
1
1
Y
1
A
GLN
9
A
GLN
2
1
Y
1
A
ASN
10
A
ASN
3
1
Y
1
A
HIS
11
A
HIS
4
1
Y
1
A
HIS
12
A
HIS
5
1
Y
1
A
GLU
13
A
GLU
6
1
Y
1
A
LYS
108
A
LYS
101
1
Y
1
A
ASP
109
A
ASP
102
1
Y
1
B
GLY
8
B
GLY
1
1
Y
1
B
GLN
9
B
GLN
2
1
Y
1
B
ASN
10
B
ASN
3
1
Y
1
B
HIS
11
B
HIS
4
1
Y
1
B
HIS
12
B
HIS
5
1
Y
1
B
GLU
13
B
GLU
6
1
Y
1
B
LYS
108
B
LYS
101
1
Y
1
B
ASP
109
B
ASP
102
1
Y
1
C
GLY
8
C
GLY
1
1
Y
1
C
GLN
9
C
GLN
2
1
Y
1
C
ASN
10
C
ASN
3
1
Y
1
C
HIS
11
C
HIS
4
1
Y
1
C
HIS
12
C
HIS
5
1
Y
1
C
GLU
13
C
GLU
6
1
Y
1
C
LYS
108
C
LYS
101
1
Y
1
C
ASP
109
C
ASP
102
1
Y
1
D
GLY
8
D
GLY
1
1
Y
1
D
GLN
9
D
GLN
2
1
Y
1
D
ASN
10
D
ASN
3
1
Y
1
D
HIS
11
D
HIS
4
1
Y
1
D
HIS
12
D
HIS
5
1
Y
1
D
GLU
13
D
GLU
6
1
Y
1
D
LYS
108
D
LYS
101
1
Y
1
D
ASP
109
D
ASP
102
1
Y
1
A
CYS
26
-28.46
117.05
1
A
ASP
41
-88.98
33.36
1
A
GLU
42
-141.20
25.56
1
A
ASN
62
-100.76
77.09
1
A
ASP
63
178.70
128.39
1
A
PRO
85
-34.88
101.45
1
A
GLN
87
-145.11
27.50
1
B
CYS
26
-26.15
119.93
1
B
ASP
63
163.13
101.89
1
B
HIS
86
81.33
-15.83
1
C
CYS
26
-28.49
117.68
1
C
ASP
63
177.79
140.59
1
C
PRO
85
-61.04
96.05
1
C
HIS
86
94.51
-90.43
1
C
GLN
87
21.75
-91.66
1
D
CYS
26
-27.66
117.50
1
D
ASP
63
164.98
136.46
1
D
HIS
86
80.70
-9.64
PARHCSDX.PRO
TOPHCSDX.PRO
46.8
12.29
0.00
0.00
-32.48
0.00
20.1816
A SOLVENT MASK WAS APPLIED DURING THE FINAL REFINEMENT ROUNDS
0.297
0.205
0.205
2.5
10.0
1755
16942
9.9
95.8
IN SMALL SHELLS
100000.
0.1
1
RESTRAINED
THROUGHOUT
0.0
MIR
2.5
10.0
191
3235
0
0
3044
0.013
1.69
26.8
1.63
1.7
1.5
3.0
2.0
2.3
2.0
3.6
2.5
1
RESTRAINED
1
X-RAY DIFFRACTION
0.385
0.363
2.59
234
1423
10
9.6
90.6
2.5
10.0
1VPF
17684
0.041
1
56.5
3.6
97.
2.5
2.6
0.103
3.2
96.
data scaling
XDS
data scaling
XSCALE
model building
X-PLOR
3.8
refinement
X-PLOR
3.8
data reduction
XDS
phasing
X-PLOR
3.8
VASCULAR ENDOTHELIAL GROWTH FACTOR
STRUCTURE OF HUMAN VASCULAR ENDOTHELIAL GROWTH FACTOR
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
A
PHE
17
A
PHE
10
HELX_P
A
SER
24
A
SER
17
1
1
8
A
ILE
35
A
ILE
28
HELX_P
A
GLU
38
A
GLU
31
1
2
4
A
PRO
40
A
PRO
33
HELX_P
A
GLU
42
A
GLU
35
5
3
3
B
PHE
17
B
PHE
10
HELX_P
B
SER
24
B
SER
17
1
4
8
B
ILE
35
B
ILE
28
HELX_P
B
GLU
38
B
GLU
31
1
5
4
B
PRO
40
B
PRO
33
HELX_P
B
GLU
44
B
GLU
37
5
6
5
C
PHE
17
C
PHE
10
HELX_P
C
SER
24
C
SER
17
1
7
8
C
ILE
35
C
ILE
28
HELX_P
C
GLU
38
C
GLU
31
1
8
4
D
PHE
17
D
PHE
10
HELX_P
D
SER
24
D
SER
17
1
9
8
D
ILE
35
D
ILE
28
HELX_P
D
GLU
38
D
GLU
31
1
10
4
disulf
2.029
A
CYS
26
A
SG
CYS
19
1_555
A
CYS
68
A
SG
CYS
61
1_555
disulf
2.031
A
CYS
51
A
SG
CYS
44
1_555
B
CYS
60
B
SG
CYS
53
1_555
disulf
2.020
A
CYS
57
A
SG
CYS
50
1_555
A
CYS
102
A
SG
CYS
95
1_555
disulf
2.020
A
CYS
60
A
SG
CYS
53
1_555
B
CYS
51
B
SG
CYS
44
1_555
disulf
2.012
A
CYS
61
A
SG
CYS
54
1_555
A
CYS
104
A
SG
CYS
97
1_555
disulf
2.027
B
CYS
26
B
SG
CYS
19
1_555
B
CYS
68
B
SG
CYS
61
1_555
disulf
2.022
B
CYS
57
B
SG
CYS
50
1_555
B
CYS
102
B
SG
CYS
95
1_555
disulf
2.026
B
CYS
61
B
SG
CYS
54
1_555
B
CYS
104
B
SG
CYS
97
1_555
disulf
2.021
C
CYS
26
C
SG
CYS
19
1_555
C
CYS
68
C
SG
CYS
61
1_555
disulf
2.042
C
CYS
51
C
SG
CYS
44
1_555
D
CYS
60
D
SG
CYS
53
1_555
disulf
2.021
C
CYS
57
C
SG
CYS
50
1_555
C
CYS
102
C
SG
CYS
95
1_555
disulf
2.034
C
CYS
60
C
SG
CYS
53
1_555
D
CYS
51
D
SG
CYS
44
1_555
disulf
2.027
C
CYS
61
C
SG
CYS
54
1_555
C
CYS
104
C
SG
CYS
97
1_555
disulf
2.022
D
CYS
26
D
SG
CYS
19
1_555
D
CYS
68
D
SG
CYS
61
1_555
disulf
2.034
D
CYS
57
D
SG
CYS
50
1_555
D
CYS
102
D
SG
CYS
95
1_555
disulf
2.017
D
CYS
61
D
SG
CYS
54
1_555
D
CYS
104
D
SG
CYS
97
1_555
GROWTH FACTOR
GROWTH FACTOR, CYSTINE KNOT, ANGIOGENESIS, VASCULOGENESIS
A
LYS
48
A
LYS
41
1
A
PRO
49
A
PRO
42
-0.08
B
LYS
48
B
LYS
41
1
B
PRO
49
B
PRO
42
-0.34
C
LYS
48
C
LYS
41
1
C
PRO
49
C
PRO
42
-0.24
D
LYS
48
D
LYS
41
1
D
PRO
49
D
PRO
42
-0.15
given
-0.998934
0.046111
0.002100
0.046138
0.996116
0.075000
0.001366
0.075017
-0.997181
39.70000
-1.60000
17.93000
given
-0.999584
-0.028418
0.005004
0.028430
-0.999593
0.002344
0.004935
0.002485
0.999985
11.60000
5.22000
-38.82000
given
0.999837
0.017115
0.005777
0.016532
-0.995875
0.089215
0.007280
-0.089105
-0.995996
27.70000
1.15000
57.10000
VEGFA_HUMAN
UNP
1
1
P15692
MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPL
MRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRY
KSWSVPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
34
135
1VPF
8
109
P15692
A
1
1
102
34
135
1VPF
8
109
P15692
B
1
1
102
34
135
1VPF
8
109
P15692
C
1
1
102
34
135
1VPF
8
109
P15692
D
1
1
102
2
2
2
3
2
3
2
3
2
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
27
A
HIS
20
A
ASP
34
A
ASP
27
A
CYS
51
A
CYS
44
A
GLY
58
A
GLY
51
A
GLU
73
A
GLU
66
A
ILE
83
A
ILE
76
A
GLN
89
A
GLN
82
A
HIS
99
A
HIS
92
B
HIS
27
B
HIS
20
B
ASP
34
B
ASP
27
B
CYS
51
B
CYS
44
B
GLY
58
B
GLY
51
B
ILE
46
B
ILE
39
B
LYS
48
B
LYS
41
B
GLU
73
B
GLU
66
B
ILE
83
B
ILE
76
B
GLN
89
B
GLN
82
B
HIS
99
B
HIS
92
C
HIS
27
C
HIS
20
C
ASP
34
C
ASP
27
C
CYS
51
C
CYS
44
C
GLY
58
C
GLY
51
C
ILE
46
C
ILE
39
C
LYS
48
C
LYS
41
C
GLU
73
C
GLU
66
C
ILE
83
C
ILE
76
C
HIS
90
C
HIS
83
C
HIS
99
C
HIS
92
D
HIS
27
D
HIS
20
D
ASP
34
D
ASP
27
D
CYS
51
D
CYS
44
D
GLY
58
D
GLY
51
D
ILE
46
D
ILE
39
D
LYS
48
D
LYS
41
D
GLU
73
D
GLU
66
D
ILE
83
D
ILE
76
D
GLN
89
D
GLN
82
D
HIS
99
D
HIS
92
A
LEU
66
A
LEU
59
A
GLU
72
A
GLU
65
A
LYS
101
A
LYS
94
A
PRO
106
A
PRO
99
B
LEU
66
B
LEU
59
B
GLU
72
B
GLU
65
B
LYS
101
B
LYS
94
B
PRO
106
B
PRO
99
C
LEU
66
C
LEU
59
C
GLU
72
C
GLU
65
C
LYS
101
C
LYS
94
C
PRO
106
C
PRO
99
D
LEU
66
D
LEU
59
D
GLU
72
D
GLU
65
D
LYS
101
D
LYS
94
D
PRO
106
D
PRO
99
4
P 1 21 1