0.011723
0.000000
0.006339
0.000000
0.014749
0.000000
0.000000
0.000000
0.014140
0.00000
0.00000
0.00000
Hodel, A.E.
Gershon, P.D.
Shi, X.
Quiocho, F.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
118.40
90.00
85.300
67.800
80.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C15 H22 N6 O5 S
398.437
S-ADENOSYLMETHIONINE
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
O
N
295
N
C
N
296
N
C
N
297
S
S
N
298
N
C
N
299
N
C
N
300
S
C
N
301
N
O
N
302
S
C
N
303
N
O
N
304
R
C
N
305
N
O
N
306
R
C
Y
307
N
N
Y
308
N
C
Y
309
N
N
Y
310
N
C
Y
311
N
C
N
312
N
N
Y
313
N
N
Y
314
N
C
Y
315
N
N
Y
316
N
C
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
R
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
N
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
Y
313
N
sing
Y
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
Y
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
doub
N
322
N
sing
N
323
N
sing
Y
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
85
247
256
10.1016/S0092-8674(00)81101-0
8612277
The 1.85 A structure of vaccinia protein VP39: a bifunctional enzyme that participates in the modification of both mRNA ends.
1996
To be Published
0353
Methyltransferase-Specific Domains within Vp39, a Bifunctional Enzyme which Participates in the Modification of Both Mrna Ends
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
269
20700
Mutational Analysis of a Multifunctional Protein, with Mrna 5' CAP-Specific (Nucleoside-2'-O-)-Methyltransferase and 3'-Adenylyltransferase Stimulatory Activities, Encoded by Vaccinia Virus
1994
10.2210/pdb1vpt/pdb
pdb_00001vpt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
103
1
IMAGE PLATE
1995-12-13
MAC Science DIP-2030
M
x-ray
1
1.5418
1.0
1.5418
39925.895
VP39
2.7.7.19
AS11 VARIANT (R140A, K142A, R143A)
1
man
polymer
398.437
S-ADENOSYLMETHIONINE
1
syn
non-polymer
18.015
water
203
nat
water
POLY(A) POLYMERASE REGULATORY SUBUNIT
no
no
GSPGISGGGGGILDSMDVVSLDKPFMYFEEIDNELDYEPESANEVAKKLPYQGQLKLLLGELFFLSKLQRHGILDGATVV
YIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEYLRSIKKQLHPSKIILISDVASAAGG
NEPSTADLLSNYALQNVMISILNPVASSLKWRCPFPDQWIKDFYIPHGNKMLQPFAPSYSAEMRLLSIYTGENMRLTRVT
KSDAVNYEKKMYYLNKIVRNKVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIPTTSTEKVS
HEPIQRKISSKNSMSKNRNSKRSVRSNK
GSPGISGGGGGILDSMDVVSLDKPFMYFEEIDNELDYEPESANEVAKKLPYQGQLKLLLGELFFLSKLQRHGILDGATVV
YIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEYLRSIKKQLHPSKIILISDVASAAGG
NEPSTADLLSNYALQNVMISILNPVASSLKWRCPFPDQWIKDFYIPHGNKMLQPFAPSYSAEMRLLSIYTGENMRLTRVT
KSDAVNYEKKMYYLNKIVRNKVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIPTTSTEKVS
HEPIQRKISSKNSMSKNRNSKRSVRSNK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Orthopoxvirus
Vaccinia virus
WR
Escherichia
sample
10254
Vaccinia virus
562
Escherichia coli
1
2.56
53.
4.5
pH 4.5
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Atomic model
Database references
Derived calculations
Data collection
1
0
1996-08-17
1
1
2008-03-24
1
2
2011-07-13
1
3
2011-11-16
1
4
2021-11-03
1
5
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1996-03-20
REL
REL
SAM
S-ADENOSYLMETHIONINE
HOH
water
SAM
400
2
SAM
SAM
400
A
HOH
700
3
HOH
HOH
700
A
HOH
701
3
HOH
HOH
701
A
HOH
702
3
HOH
HOH
702
A
HOH
703
3
HOH
HOH
703
A
HOH
704
3
HOH
HOH
704
A
HOH
705
3
HOH
HOH
705
A
HOH
706
3
HOH
HOH
706
A
HOH
707
3
HOH
HOH
707
A
HOH
708
3
HOH
HOH
708
A
HOH
709
3
HOH
HOH
709
A
HOH
710
3
HOH
HOH
710
A
HOH
711
3
HOH
HOH
711
A
HOH
712
3
HOH
HOH
712
A
HOH
713
3
HOH
HOH
713
A
HOH
714
3
HOH
HOH
714
A
HOH
715
3
HOH
HOH
715
A
HOH
716
3
HOH
HOH
716
A
HOH
717
3
HOH
HOH
717
A
HOH
718
3
HOH
HOH
718
A
HOH
719
3
HOH
HOH
719
A
HOH
720
3
HOH
HOH
720
A
HOH
721
3
HOH
HOH
721
A
HOH
722
3
HOH
HOH
722
A
HOH
723
3
HOH
HOH
723
A
HOH
724
3
HOH
HOH
724
A
HOH
725
3
HOH
HOH
725
A
HOH
726
3
HOH
HOH
726
A
HOH
727
3
HOH
HOH
727
A
HOH
728
3
HOH
HOH
728
A
HOH
729
3
HOH
HOH
729
A
HOH
730
3
HOH
HOH
730
A
HOH
731
3
HOH
HOH
731
A
HOH
732
3
HOH
HOH
732
A
HOH
733
3
HOH
HOH
733
A
HOH
734
3
HOH
HOH
734
A
HOH
735
3
HOH
HOH
735
A
HOH
736
3
HOH
HOH
736
A
HOH
737
3
HOH
HOH
737
A
HOH
738
3
HOH
HOH
738
A
HOH
739
3
HOH
HOH
739
A
HOH
740
3
HOH
HOH
740
A
HOH
741
3
HOH
HOH
741
A
HOH
742
3
HOH
HOH
742
A
HOH
743
3
HOH
HOH
743
A
HOH
744
3
HOH
HOH
744
A
HOH
745
3
HOH
HOH
745
A
HOH
746
3
HOH
HOH
746
A
HOH
747
3
HOH
HOH
747
A
HOH
748
3
HOH
HOH
748
A
HOH
749
3
HOH
HOH
749
A
HOH
750
3
HOH
HOH
750
A
HOH
751
3
HOH
HOH
751
A
HOH
752
3
HOH
HOH
752
A
HOH
753
3
HOH
HOH
753
A
HOH
754
3
HOH
HOH
754
A
HOH
755
3
HOH
HOH
755
A
HOH
756
3
HOH
HOH
756
A
HOH
757
3
HOH
HOH
757
A
HOH
758
3
HOH
HOH
758
A
HOH
759
3
HOH
HOH
759
A
HOH
760
3
HOH
HOH
760
A
HOH
761
3
HOH
HOH
761
A
HOH
762
3
HOH
HOH
762
A
HOH
763
3
HOH
HOH
763
A
HOH
764
3
HOH
HOH
764
A
HOH
765
3
HOH
HOH
765
A
HOH
766
3
HOH
HOH
766
A
HOH
767
3
HOH
HOH
767
A
HOH
768
3
HOH
HOH
768
A
HOH
769
3
HOH
HOH
769
A
HOH
770
3
HOH
HOH
770
A
HOH
771
3
HOH
HOH
771
A
HOH
772
3
HOH
HOH
772
A
HOH
773
3
HOH
HOH
773
A
HOH
774
3
HOH
HOH
774
A
HOH
775
3
HOH
HOH
775
A
HOH
776
3
HOH
HOH
776
A
HOH
777
3
HOH
HOH
777
A
HOH
778
3
HOH
HOH
778
A
HOH
779
3
HOH
HOH
779
A
HOH
780
3
HOH
HOH
780
A
HOH
781
3
HOH
HOH
781
A
HOH
782
3
HOH
HOH
782
A
HOH
783
3
HOH
HOH
783
A
HOH
784
3
HOH
HOH
784
A
HOH
785
3
HOH
HOH
785
A
HOH
786
3
HOH
HOH
786
A
HOH
787
3
HOH
HOH
787
A
HOH
788
3
HOH
HOH
788
A
HOH
789
3
HOH
HOH
789
A
HOH
790
3
HOH
HOH
790
A
HOH
791
3
HOH
HOH
791
A
HOH
792
3
HOH
HOH
792
A
HOH
793
3
HOH
HOH
793
A
HOH
794
3
HOH
HOH
794
A
HOH
795
3
HOH
HOH
795
A
HOH
796
3
HOH
HOH
796
A
HOH
797
3
HOH
HOH
797
A
HOH
798
3
HOH
HOH
798
A
HOH
799
3
HOH
HOH
799
A
HOH
800
3
HOH
HOH
800
A
HOH
802
3
HOH
HOH
802
A
HOH
803
3
HOH
HOH
803
A
HOH
804
3
HOH
HOH
804
A
HOH
805
3
HOH
HOH
805
A
HOH
806
3
HOH
HOH
806
A
HOH
807
3
HOH
HOH
807
A
HOH
808
3
HOH
HOH
808
A
HOH
809
3
HOH
HOH
809
A
HOH
810
3
HOH
HOH
810
A
HOH
811
3
HOH
HOH
811
A
HOH
812
3
HOH
HOH
812
A
HOH
813
3
HOH
HOH
813
A
HOH
814
3
HOH
HOH
814
A
HOH
815
3
HOH
HOH
815
A
HOH
816
3
HOH
HOH
816
A
HOH
817
3
HOH
HOH
817
A
HOH
818
3
HOH
HOH
818
A
HOH
819
3
HOH
HOH
819
A
HOH
820
3
HOH
HOH
820
A
HOH
821
3
HOH
HOH
821
A
HOH
822
3
HOH
HOH
822
A
HOH
823
3
HOH
HOH
823
A
HOH
824
3
HOH
HOH
824
A
HOH
825
3
HOH
HOH
825
A
HOH
826
3
HOH
HOH
826
A
HOH
827
3
HOH
HOH
827
A
HOH
828
3
HOH
HOH
828
A
HOH
829
3
HOH
HOH
829
A
HOH
830
3
HOH
HOH
830
A
HOH
831
3
HOH
HOH
831
A
HOH
832
3
HOH
HOH
832
A
HOH
833
3
HOH
HOH
833
A
HOH
834
3
HOH
HOH
834
A
HOH
835
3
HOH
HOH
835
A
HOH
836
3
HOH
HOH
836
A
HOH
837
3
HOH
HOH
837
A
HOH
838
3
HOH
HOH
838
A
HOH
839
3
HOH
HOH
839
A
HOH
840
3
HOH
HOH
840
A
HOH
841
3
HOH
HOH
841
A
HOH
842
3
HOH
HOH
842
A
HOH
843
3
HOH
HOH
843
A
HOH
844
3
HOH
HOH
844
A
HOH
845
3
HOH
HOH
845
A
HOH
846
3
HOH
HOH
846
A
HOH
847
3
HOH
HOH
847
A
HOH
848
3
HOH
HOH
848
A
HOH
849
3
HOH
HOH
849
A
HOH
850
3
HOH
HOH
850
A
HOH
851
3
HOH
HOH
851
A
HOH
852
3
HOH
HOH
852
A
HOH
853
3
HOH
HOH
853
A
HOH
854
3
HOH
HOH
854
A
HOH
855
3
HOH
HOH
855
A
HOH
856
3
HOH
HOH
856
A
HOH
857
3
HOH
HOH
857
A
HOH
858
3
HOH
HOH
858
A
HOH
859
3
HOH
HOH
859
A
HOH
860
3
HOH
HOH
860
A
HOH
861
3
HOH
HOH
861
A
HOH
862
3
HOH
HOH
862
A
HOH
863
3
HOH
HOH
863
A
HOH
864
3
HOH
HOH
864
A
HOH
865
3
HOH
HOH
865
A
HOH
866
3
HOH
HOH
866
A
HOH
867
3
HOH
HOH
867
A
HOH
868
3
HOH
HOH
868
A
HOH
869
3
HOH
HOH
869
A
HOH
870
3
HOH
HOH
870
A
HOH
871
3
HOH
HOH
871
A
HOH
872
3
HOH
HOH
872
A
HOH
873
3
HOH
HOH
873
A
HOH
874
3
HOH
HOH
874
A
HOH
875
3
HOH
HOH
875
A
HOH
876
3
HOH
HOH
876
A
HOH
877
3
HOH
HOH
877
A
HOH
878
3
HOH
HOH
878
A
HOH
879
3
HOH
HOH
879
A
HOH
880
3
HOH
HOH
880
A
HOH
881
3
HOH
HOH
881
A
HOH
882
3
HOH
HOH
882
A
HOH
883
3
HOH
HOH
883
A
HOH
884
3
HOH
HOH
884
A
HOH
885
3
HOH
HOH
885
A
HOH
886
3
HOH
HOH
886
A
HOH
887
3
HOH
HOH
887
A
HOH
888
3
HOH
HOH
888
A
HOH
889
3
HOH
HOH
889
A
HOH
890
3
HOH
HOH
890
A
HOH
891
3
HOH
HOH
891
A
HOH
892
3
HOH
HOH
892
A
HOH
893
3
HOH
HOH
893
A
HOH
894
3
HOH
HOH
894
A
HOH
895
3
HOH
HOH
895
A
HOH
896
3
HOH
HOH
896
A
HOH
897
3
HOH
HOH
897
A
HOH
898
3
HOH
HOH
898
A
HOH
899
3
HOH
HOH
899
A
HOH
900
3
HOH
HOH
900
A
HOH
901
3
HOH
HOH
901
A
HOH
902
3
HOH
HOH
902
A
HOH
903
3
HOH
HOH
903
A
n
1
-14
A
n
2
-13
A
n
3
-12
A
n
4
-11
A
n
5
-10
A
n
6
-9
A
n
7
-8
A
n
8
-7
A
n
9
-6
A
n
10
-5
A
n
11
-4
A
n
12
-3
A
n
13
-2
A
n
14
-1
A
n
15
0
A
MET
1
n
16
MET
1
A
ASP
2
n
17
ASP
2
A
VAL
3
n
18
VAL
3
A
VAL
4
n
19
VAL
4
A
SER
5
n
20
SER
5
A
LEU
6
n
21
LEU
6
A
ASP
7
n
22
ASP
7
A
LYS
8
n
23
LYS
8
A
PRO
9
n
24
PRO
9
A
PHE
10
n
25
PHE
10
A
MET
11
n
26
MET
11
A
TYR
12
n
27
TYR
12
A
PHE
13
n
28
PHE
13
A
GLU
14
n
29
GLU
14
A
GLU
15
n
30
GLU
15
A
ILE
16
n
31
ILE
16
A
ASP
17
n
32
ASP
17
A
ASN
18
n
33
ASN
18
A
GLU
19
n
34
GLU
19
A
LEU
20
n
35
LEU
20
A
ASP
21
n
36
ASP
21
A
TYR
22
n
37
TYR
22
A
GLU
23
n
38
GLU
23
A
PRO
24
n
39
PRO
24
A
GLU
25
n
40
GLU
25
A
SER
26
n
41
SER
26
A
ALA
27
n
42
ALA
27
A
ASN
28
n
43
ASN
28
A
GLU
29
n
44
GLU
29
A
VAL
30
n
45
VAL
30
A
ALA
31
n
46
ALA
31
A
LYS
32
n
47
LYS
32
A
LYS
33
n
48
LYS
33
A
LEU
34
n
49
LEU
34
A
PRO
35
n
50
PRO
35
A
TYR
36
n
51
TYR
36
A
GLN
37
n
52
GLN
37
A
GLY
38
n
53
GLY
38
A
GLN
39
n
54
GLN
39
A
LEU
40
n
55
LEU
40
A
LYS
41
n
56
LYS
41
A
LEU
42
n
57
LEU
42
A
LEU
43
n
58
LEU
43
A
LEU
44
n
59
LEU
44
A
GLY
45
n
60
GLY
45
A
GLU
46
n
61
GLU
46
A
LEU
47
n
62
LEU
47
A
PHE
48
n
63
PHE
48
A
PHE
49
n
64
PHE
49
A
LEU
50
n
65
LEU
50
A
SER
51
n
66
SER
51
A
LYS
52
n
67
LYS
52
A
LEU
53
n
68
LEU
53
A
GLN
54
n
69
GLN
54
A
ARG
55
n
70
ARG
55
A
HIS
56
n
71
HIS
56
A
GLY
57
n
72
GLY
57
A
ILE
58
n
73
ILE
58
A
LEU
59
n
74
LEU
59
A
ASP
60
n
75
ASP
60
A
GLY
61
n
76
GLY
61
A
ALA
62
n
77
ALA
62
A
THR
63
n
78
THR
63
A
VAL
64
n
79
VAL
64
A
VAL
65
n
80
VAL
65
A
TYR
66
n
81
TYR
66
A
ILE
67
n
82
ILE
67
A
GLY
68
n
83
GLY
68
A
SER
69
n
84
SER
69
A
ALA
70
n
85
ALA
70
A
PRO
71
n
86
PRO
71
A
GLY
72
n
87
GLY
72
A
THR
73
n
88
THR
73
A
HIS
74
n
89
HIS
74
A
ILE
75
n
90
ILE
75
A
ARG
76
n
91
ARG
76
A
TYR
77
n
92
TYR
77
A
LEU
78
n
93
LEU
78
A
ARG
79
n
94
ARG
79
A
ASP
80
n
95
ASP
80
A
HIS
81
n
96
HIS
81
A
PHE
82
n
97
PHE
82
A
TYR
83
n
98
TYR
83
A
ASN
84
n
99
ASN
84
A
LEU
85
n
100
LEU
85
A
GLY
86
n
101
GLY
86
A
VAL
87
n
102
VAL
87
A
ILE
88
n
103
ILE
88
A
ILE
89
n
104
ILE
89
A
LYS
90
n
105
LYS
90
A
TRP
91
n
106
TRP
91
A
MET
92
n
107
MET
92
A
LEU
93
n
108
LEU
93
A
ILE
94
n
109
ILE
94
A
ASP
95
n
110
ASP
95
A
GLY
96
n
111
GLY
96
A
ARG
97
n
112
ARG
97
A
HIS
98
n
113
HIS
98
A
HIS
99
n
114
HIS
99
A
ASP
100
n
115
ASP
100
A
PRO
101
n
116
PRO
101
A
ILE
102
n
117
ILE
102
A
LEU
103
n
118
LEU
103
A
ASN
104
n
119
ASN
104
A
GLY
105
n
120
GLY
105
A
LEU
106
n
121
LEU
106
A
ARG
107
n
122
ARG
107
A
ASP
108
n
123
ASP
108
A
VAL
109
n
124
VAL
109
A
THR
110
n
125
THR
110
A
LEU
111
n
126
LEU
111
A
VAL
112
n
127
VAL
112
A
THR
113
n
128
THR
113
A
ARG
114
n
129
ARG
114
A
PHE
115
n
130
PHE
115
A
VAL
116
n
131
VAL
116
A
ASP
117
n
132
ASP
117
A
GLU
118
n
133
GLU
118
A
GLU
119
n
134
GLU
119
A
TYR
120
n
135
TYR
120
A
LEU
121
n
136
LEU
121
A
ARG
122
n
137
ARG
122
A
SER
123
n
138
SER
123
A
ILE
124
n
139
ILE
124
A
LYS
125
n
140
LYS
125
A
LYS
126
n
141
LYS
126
A
GLN
127
n
142
GLN
127
A
LEU
128
n
143
LEU
128
A
HIS
129
n
144
HIS
129
A
PRO
130
n
145
PRO
130
A
SER
131
n
146
SER
131
A
LYS
132
n
147
LYS
132
A
ILE
133
n
148
ILE
133
A
ILE
134
n
149
ILE
134
A
LEU
135
n
150
LEU
135
A
ILE
136
n
151
ILE
136
A
SER
137
n
152
SER
137
A
ASP
138
n
153
ASP
138
A
VAL
139
n
154
VAL
139
A
ALA
140
n
155
ALA
140
A
SER
141
n
156
SER
141
A
n
157
142
A
n
158
143
A
n
159
144
A
n
160
145
A
n
161
146
A
n
162
147
A
PRO
148
n
163
PRO
148
A
SER
149
n
164
SER
149
A
THR
150
n
165
THR
150
A
ALA
151
n
166
ALA
151
A
ASP
152
n
167
ASP
152
A
LEU
153
n
168
LEU
153
A
LEU
154
n
169
LEU
154
A
SER
155
n
170
SER
155
A
ASN
156
n
171
ASN
156
A
TYR
157
n
172
TYR
157
A
ALA
158
n
173
ALA
158
A
LEU
159
n
174
LEU
159
A
GLN
160
n
175
GLN
160
A
ASN
161
n
176
ASN
161
A
VAL
162
n
177
VAL
162
A
MET
163
n
178
MET
163
A
ILE
164
n
179
ILE
164
A
SER
165
n
180
SER
165
A
ILE
166
n
181
ILE
166
A
LEU
167
n
182
LEU
167
A
ASN
168
n
183
ASN
168
A
PRO
169
n
184
PRO
169
A
VAL
170
n
185
VAL
170
A
ALA
171
n
186
ALA
171
A
SER
172
n
187
SER
172
A
SER
173
n
188
SER
173
A
LEU
174
n
189
LEU
174
A
LYS
175
n
190
LYS
175
A
TRP
176
n
191
TRP
176
A
ARG
177
n
192
ARG
177
A
CYS
178
n
193
CYS
178
A
PRO
179
n
194
PRO
179
A
PHE
180
n
195
PHE
180
A
PRO
181
n
196
PRO
181
A
ASP
182
n
197
ASP
182
A
GLN
183
n
198
GLN
183
A
TRP
184
n
199
TRP
184
A
ILE
185
n
200
ILE
185
A
LYS
186
n
201
LYS
186
A
ASP
187
n
202
ASP
187
A
PHE
188
n
203
PHE
188
A
TYR
189
n
204
TYR
189
A
ILE
190
n
205
ILE
190
A
PRO
191
n
206
PRO
191
A
HIS
192
n
207
HIS
192
A
GLY
193
n
208
GLY
193
A
ASN
194
n
209
ASN
194
A
LYS
195
n
210
LYS
195
A
MET
196
n
211
MET
196
A
LEU
197
n
212
LEU
197
A
GLN
198
n
213
GLN
198
A
PRO
199
n
214
PRO
199
A
PHE
200
n
215
PHE
200
A
ALA
201
n
216
ALA
201
A
PRO
202
n
217
PRO
202
A
SER
203
n
218
SER
203
A
TYR
204
n
219
TYR
204
A
SER
205
n
220
SER
205
A
ALA
206
n
221
ALA
206
A
GLU
207
n
222
GLU
207
A
MET
208
n
223
MET
208
A
ARG
209
n
224
ARG
209
A
LEU
210
n
225
LEU
210
A
LEU
211
n
226
LEU
211
A
SER
212
n
227
SER
212
A
ILE
213
n
228
ILE
213
A
TYR
214
n
229
TYR
214
A
THR
215
n
230
THR
215
A
GLY
216
n
231
GLY
216
A
GLU
217
n
232
GLU
217
A
ASN
218
n
233
ASN
218
A
MET
219
n
234
MET
219
A
ARG
220
n
235
ARG
220
A
LEU
221
n
236
LEU
221
A
THR
222
n
237
THR
222
A
ARG
223
n
238
ARG
223
A
VAL
224
n
239
VAL
224
A
THR
225
n
240
THR
225
A
LYS
226
n
241
LYS
226
A
SER
227
n
242
SER
227
A
ASP
228
n
243
ASP
228
A
ALA
229
n
244
ALA
229
A
VAL
230
n
245
VAL
230
A
ASN
231
n
246
ASN
231
A
TYR
232
n
247
TYR
232
A
GLU
233
n
248
GLU
233
A
LYS
234
n
249
LYS
234
A
LYS
235
n
250
LYS
235
A
MET
236
n
251
MET
236
A
TYR
237
n
252
TYR
237
A
TYR
238
n
253
TYR
238
A
LEU
239
n
254
LEU
239
A
ASN
240
n
255
ASN
240
A
LYS
241
n
256
LYS
241
A
ILE
242
n
257
ILE
242
A
VAL
243
n
258
VAL
243
A
ARG
244
n
259
ARG
244
A
ASN
245
n
260
ASN
245
A
LYS
246
n
261
LYS
246
A
VAL
247
n
262
VAL
247
A
VAL
248
n
263
VAL
248
A
VAL
249
n
264
VAL
249
A
ASN
250
n
265
ASN
250
A
PHE
251
n
266
PHE
251
A
ASP
252
n
267
ASP
252
A
TYR
253
n
268
TYR
253
A
PRO
254
n
269
PRO
254
A
ASN
255
n
270
ASN
255
A
GLN
256
n
271
GLN
256
A
GLU
257
n
272
GLU
257
A
TYR
258
n
273
TYR
258
A
ASP
259
n
274
ASP
259
A
TYR
260
n
275
TYR
260
A
PHE
261
n
276
PHE
261
A
HIS
262
n
277
HIS
262
A
MET
263
n
278
MET
263
A
TYR
264
n
279
TYR
264
A
PHE
265
n
280
PHE
265
A
MET
266
n
281
MET
266
A
LEU
267
n
282
LEU
267
A
ARG
268
n
283
ARG
268
A
THR
269
n
284
THR
269
A
VAL
270
n
285
VAL
270
A
TYR
271
n
286
TYR
271
A
CYS
272
n
287
CYS
272
A
ASN
273
n
288
ASN
273
A
LYS
274
n
289
LYS
274
A
THR
275
n
290
THR
275
A
PHE
276
n
291
PHE
276
A
PRO
277
n
292
PRO
277
A
THR
278
n
293
THR
278
A
THR
279
n
294
THR
279
A
LYS
280
n
295
LYS
280
A
ALA
281
n
296
ALA
281
A
LYS
282
n
297
LYS
282
A
VAL
283
n
298
VAL
283
A
LEU
284
n
299
LEU
284
A
PHE
285
n
300
PHE
285
A
LEU
286
n
301
LEU
286
A
GLN
287
n
302
GLN
287
A
GLN
288
n
303
GLN
288
A
SER
289
n
304
SER
289
A
ILE
290
n
305
ILE
290
A
PHE
291
n
306
PHE
291
A
ARG
292
n
307
ARG
292
A
PHE
293
n
308
PHE
293
A
LEU
294
n
309
LEU
294
A
ASN
295
n
310
ASN
295
A
ILE
296
n
311
ILE
296
A
PRO
297
n
312
PRO
297
A
n
313
298
A
n
314
299
A
n
315
300
A
n
316
301
A
n
317
302
A
n
318
303
A
n
319
304
A
n
320
305
A
n
321
306
A
n
322
307
A
n
323
308
A
n
324
309
A
n
325
310
A
n
326
311
A
n
327
312
A
n
328
313
A
n
329
314
A
n
330
315
A
n
331
316
A
n
332
317
A
n
333
318
A
n
334
319
A
n
335
320
A
n
336
321
A
n
337
322
A
n
338
323
A
n
339
324
A
n
340
325
A
n
341
326
A
n
342
327
A
n
343
328
A
n
344
329
A
n
345
330
A
n
346
331
A
n
347
332
A
n
348
333
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
194
A
O
ASN
209
A
N
LEU
211
A
N
LEU
226
A
O
MET
208
A
O
MET
223
A
N
TRP
176
A
N
TRP
191
A
O
ALA
171
A
O
ALA
186
A
N
LEU
135
A
N
LEU
150
A
O
ILE
134
A
O
ILE
149
A
N
THR
63
A
N
THR
78
A
O
VAL
64
A
O
VAL
79
A
N
LYS
90
A
N
LYS
105
A
O
TRP
91
A
O
TRP
106
A
N
THR
110
A
N
THR
125
A
O
PHE
188
A
O
PHE
203
A
N
VAL
224
A
N
VAL
239
1
A
HOH
822
C
HOH
1
A
HOH
845
C
HOH
1
A
HOH
870
C
HOH
1
A
GLY
-14
A
GLY
1
1
Y
1
A
SER
-13
A
SER
2
1
Y
1
A
PRO
-12
A
PRO
3
1
Y
1
A
GLY
-11
A
GLY
4
1
Y
1
A
ILE
-10
A
ILE
5
1
Y
1
A
SER
-9
A
SER
6
1
Y
1
A
GLY
-8
A
GLY
7
1
Y
1
A
GLY
-7
A
GLY
8
1
Y
1
A
GLY
-6
A
GLY
9
1
Y
1
A
GLY
-5
A
GLY
10
1
Y
1
A
GLY
-4
A
GLY
11
1
Y
1
A
ILE
-3
A
ILE
12
1
Y
1
A
LEU
-2
A
LEU
13
1
Y
1
A
ASP
-1
A
ASP
14
1
Y
1
A
SER
0
A
SER
15
1
Y
1
A
ALA
142
A
ALA
157
1
Y
1
A
ALA
143
A
ALA
158
1
Y
1
A
GLY
144
A
GLY
159
1
Y
1
A
GLY
145
A
GLY
160
1
Y
1
A
ASN
146
A
ASN
161
1
Y
1
A
GLU
147
A
GLU
162
1
Y
1
A
THR
298
A
THR
313
1
Y
1
A
THR
299
A
THR
314
1
Y
1
A
SER
300
A
SER
315
1
Y
1
A
THR
301
A
THR
316
1
Y
1
A
GLU
302
A
GLU
317
1
Y
1
A
LYS
303
A
LYS
318
1
Y
1
A
VAL
304
A
VAL
319
1
Y
1
A
SER
305
A
SER
320
1
Y
1
A
HIS
306
A
HIS
321
1
Y
1
A
GLU
307
A
GLU
322
1
Y
1
A
PRO
308
A
PRO
323
1
Y
1
A
ILE
309
A
ILE
324
1
Y
1
A
GLN
310
A
GLN
325
1
Y
1
A
ARG
311
A
ARG
326
1
Y
1
A
LYS
312
A
LYS
327
1
Y
1
A
ILE
313
A
ILE
328
1
Y
1
A
SER
314
A
SER
329
1
Y
1
A
SER
315
A
SER
330
1
Y
1
A
LYS
316
A
LYS
331
1
Y
1
A
ASN
317
A
ASN
332
1
Y
1
A
SER
318
A
SER
333
1
Y
1
A
MET
319
A
MET
334
1
Y
1
A
SER
320
A
SER
335
1
Y
1
A
LYS
321
A
LYS
336
1
Y
1
A
ASN
322
A
ASN
337
1
Y
1
A
ARG
323
A
ARG
338
1
Y
1
A
ASN
324
A
ASN
339
1
Y
1
A
SER
325
A
SER
340
1
Y
1
A
LYS
326
A
LYS
341
1
Y
1
A
ARG
327
A
ARG
342
1
Y
1
A
SER
328
A
SER
343
1
Y
1
A
VAL
329
A
VAL
344
1
Y
1
A
ARG
330
A
ARG
345
1
Y
1
A
SER
331
A
SER
346
1
Y
1
A
ASN
332
A
ASN
347
1
Y
1
A
LYS
333
A
LYS
348
1
Y
1
A
TYR
204
0.068
SIDE CHAIN
1
5.05
0.50
120.30
125.35
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
209
209
209
N
1
-3.99
0.50
120.30
116.31
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
209
209
209
N
1
A
PRO
24
-47.94
-15.69
1
A
ILE
242
-93.37
-65.86
28.6
0.2500000
0.2150000
0.2150000
1.8
8.0
28532
10.00
98.4
1
2.
MIRAS
1.8
8.0
203
2633
27
0
2403
0.01
1.77
1.5
2.0
2.0
2.5
1.85
15.0
1VPT
33404
2.0
0.0500000
1
39.8
3.4
98.
0.2500000
1.85
1.92
6.2
1
3.6
88.6
phasing
PHASES
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
3.1
AS11 VARIANT OF VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYL-L-METHIONINE
1
N
N
2
N
N
3
N
N
A
PHE
13
A
PHE
28
HELX_P
A
GLU
15
A
GLU
30
5
1
3
A
PRO
24
A
PRO
39
HELX_P
A
ASN
28
A
ASN
43
5
2
5
A
GLN
37
A
GLN
52
HELX_P
A
ARG
55
A
ARG
70
1
3
19
A
THR
73
A
THR
88
HELX_P
A
ASN
84
A
ASN
99
1
4
12
A
PRO
101
A
PRO
116
HELX_P
A
LEU
103
A
LEU
118
5
5
3
A
GLU
118
A
GLU
133
HELX_P
A
LEU
128
A
LEU
143
1
6
11
A
THR
150
A
THR
165
HELX_P
A
LEU
167
A
LEU
182
1
7
18
A
PRO
181
A
PRO
196
HELX_P
A
GLN
183
A
GLN
198
5
8
3
A
LYS
226
A
LYS
241
HELX_P
A
LYS
241
A
LYS
256
1
9
16
A
VAL
243
A
VAL
258
HELX_P
A
ASN
245
A
ASN
260
5
10
3
A
TYR
258
A
TYR
273
HELX_P
A
THR
269
A
THR
284
1
11
12
A
THR
279
A
THR
294
HELX_P
A
LEU
294
A
LEU
309
1
12
16
METHYLTRANSFERASE
RNA CAP, POLY(A) POLYMERASE, VACCINIA, METHYLTRANSFERASE
A
ALA
70
A
ALA
85
1
A
PRO
71
A
PRO
86
-0.01
A
HIS
129
A
HIS
144
1
A
PRO
130
A
PRO
145
0.16
PAP2_VACCV
UNP
1
1
P07617
MDVVSLDKPFMYFEEIDNELDYEPESANEVAKKLPYQGQLKLLLGELFFLSKLQRHGILDGATVVYIGSAPGTHIRYLRD
HFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEYLRSIKKQLHPSKIILISDVRSKRGGNEPSTADLLSNYALQ
NVMISILNPVASSLKWRCPFPDQWIKDFYIPHGNKMLQPFAPSYSAEMRLLSIYTGENMRLTRVTKSDAVNYEKKMYYLN
KIVRNKVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIPTTSTEKVSHEPIQRKISSKNSMS
KNRNSKRSVRSNK
1
333
1VPT
1
333
P07617
A
1
16
348
1
ARG
engineered mutation
ALA
140
1VPT
A
P07617
UNP
140
155
1
LYS
conflict
ALA
142
1VPT
A
P07617
UNP
142
157
1
ARG
conflict
ALA
143
1VPT
A
P07617
UNP
143
158
7
2
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
A
ASN
194
A
ASN
209
A
MET
196
A
MET
211
A
MET
208
A
MET
223
A
ILE
213
A
ILE
228
A
ALA
171
A
ALA
186
A
TRP
176
A
TRP
191
A
ILE
133
A
ILE
148
A
SER
137
A
SER
152
A
THR
63
A
THR
78
A
ILE
67
A
ILE
82
A
LYS
90
A
LYS
105
A
ASP
95
A
ASP
110
A
VAL
109
A
VAL
124
A
THR
113
A
THR
128
A
PHE
188
A
PHE
203
A
PRO
191
A
PRO
206
A
LEU
221
A
LEU
236
A
VAL
224
A
VAL
239
BINDING SITE FOR RESIDUE SAM A 400
A
SAM
400
Software
18
A
GLN
39
A
GLN
54
18
1_555
A
LEU
42
A
LEU
57
18
1_555
A
TYR
66
A
TYR
81
18
1_555
A
ILE
67
A
ILE
82
18
1_555
A
GLY
68
A
GLY
83
18
1_555
A
SER
69
A
SER
84
18
1_555
A
ALA
70
A
ALA
85
18
1_555
A
PRO
71
A
PRO
86
18
1_555
A
GLY
72
A
GLY
87
18
1_555
A
HIS
74
A
HIS
89
18
1_555
A
ASP
95
A
ASP
110
18
1_555
A
ARG
97
A
ARG
112
18
1_555
A
PHE
115
A
PHE
130
18
1_555
A
VAL
116
A
VAL
131
18
1_555
A
ASP
138
A
ASP
153
18
1_555
A
VAL
139
A
VAL
154
18
1_555
A
ALA
140
A
ALA
155
18
1_555
A
HOH
802
C
HOH
18
1_555
5
C 1 2 1