0.020381 0.000000 0.000000 0.000000 0.017646 0.000000 0.000000 0.000000 0.010149 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 49.066 56.669 98.533 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proteins PSFGEY 0867 0887-3585 61 449 453 10.1002/prot.20502 16104018 Crystal structure of the global regulatory protein CsrA from Pseudomonas putida at 2.05 A resolution reveals a new fold. 2005 10.2210/pdb1vpz/pdb pdb_00001vpz 100 1 1 fixed-height exit beam, toroidal focusing mirror CCD 2004-11-10 ADSC Double-crystal Si(111) MAD M x-ray 1 0.979508 1.0 0.961114 1.0 5.0.2 ALS 0.979508 SYNCHROTRON ALS BEAMLINE 5.0.2 5.0.2 ALS 0.979508,0.961114 SYNCHROTRON ALS BEAMLINE 5.0.2 8522.276 Carbon storage regulator homolog 2 man polymer 18.015 water 23 nat water no yes (MSE)GSDKIHHHHHH(MSE)LILTRRVGETL(MSE)VGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEKD QEPNH MGSDKIHHHHHHMLILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEKDQEPNH A,B 357779 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pseudomonas Escherichia sample csrA 287 Pseudomonas aeruginosa 562 Escherichia coli Plasmid 1 2.71 54.29 VAPOR DIFFUSION,SITTING DROP,NANODROP 3.7 30.0% MPD, 0.1M Phosphate Citrate pH 3.7, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative software database_2 pdbx_database_related struct_conn struct_ref_seq_dif repository Initial release Version format compliance Advisory Version format compliance Refinement description Database references Derived calculations 1 0 2004-12-14 1 1 2008-04-26 1 2 2011-07-13 1 3 2017-10-04 1 4 2023-01-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_related.db_name _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details Y RCSB Y RCSB 2004-11-24 REL REL HOH water HOH 2 2 HOH HOH 62 A HOH 4 2 HOH HOH 63 A HOH 5 2 HOH HOH 64 A HOH 11 2 HOH HOH 65 A HOH 13 2 HOH HOH 66 A HOH 16 2 HOH HOH 67 A HOH 17 2 HOH HOH 68 A HOH 18 2 HOH HOH 69 A HOH 22 2 HOH HOH 70 A HOH 23 2 HOH HOH 71 A HOH 24 2 HOH HOH 72 A HOH 1 2 HOH HOH 62 B HOH 3 2 HOH HOH 63 B HOH 6 2 HOH HOH 64 B HOH 7 2 HOH HOH 65 B HOH 8 2 HOH HOH 66 B HOH 9 2 HOH HOH 67 B HOH 10 2 HOH HOH 68 B HOH 12 2 HOH HOH 69 B HOH 14 2 HOH HOH 70 B HOH 15 2 HOH HOH 71 B HOH 19 2 HOH HOH 72 B HOH 20 2 HOH HOH 73 B n 1 -11 A n 2 -10 A n 3 -9 A n 4 -8 A n 5 -7 A n 6 -6 A n 7 -5 A n 8 -4 A n 9 -3 A n 10 -2 A HIS -1 n 11 HIS -1 A HIS 0 n 12 HIS 0 A MSE 1 n 13 MSE 1 A LEU 2 n 14 LEU 2 A ILE 3 n 15 ILE 3 A LEU 4 n 16 LEU 4 A THR 5 n 17 THR 5 A ARG 6 n 18 ARG 6 A ARG 7 n 19 ARG 7 A VAL 8 n 20 VAL 8 A GLY 9 n 21 GLY 9 A GLU 10 n 22 GLU 10 A THR 11 n 23 THR 11 A LEU 12 n 24 LEU 12 A MSE 13 n 25 MSE 13 A VAL 14 n 26 VAL 14 A GLY 15 n 27 GLY 15 A ASP 16 n 28 ASP 16 A ASP 17 n 29 ASP 17 A VAL 18 n 30 VAL 18 A THR 19 n 31 THR 19 A VAL 20 n 32 VAL 20 A THR 21 n 33 THR 21 A VAL 22 n 34 VAL 22 A LEU 23 n 35 LEU 23 A GLY 24 n 36 GLY 24 A VAL 25 n 37 VAL 25 A LYS 26 n 38 LYS 26 A GLY 27 n 39 GLY 27 A ASN 28 n 40 ASN 28 A GLN 29 n 41 GLN 29 A VAL 30 n 42 VAL 30 A ARG 31 n 43 ARG 31 A ILE 32 n 44 ILE 32 A GLY 33 n 45 GLY 33 A VAL 34 n 46 VAL 34 A ASN 35 n 47 ASN 35 A ALA 36 n 48 ALA 36 A PRO 37 n 49 PRO 37 A LYS 38 n 50 LYS 38 A GLU 39 n 51 GLU 39 A VAL 40 n 52 VAL 40 A ALA 41 n 53 ALA 41 A VAL 42 n 54 VAL 42 A HIS 43 n 55 HIS 43 A ARG 44 n 56 ARG 44 A GLU 45 n 57 GLU 45 A GLU 46 n 58 GLU 46 A ILE 47 n 59 ILE 47 A TYR 48 n 60 TYR 48 A GLN 49 n 61 GLN 49 A ARG 50 n 62 ARG 50 A ILE 51 n 63 ILE 51 A GLN 52 n 64 GLN 52 A LYS 53 n 65 LYS 53 A GLU 54 n 66 GLU 54 A LYS 55 n 67 LYS 55 A n 68 56 A n 69 57 A n 70 58 A n 71 59 A n 72 60 A n 73 61 A n 1 -11 B n 2 -10 B n 3 -9 B n 4 -8 B n 5 -7 B n 6 -6 B n 7 -5 B n 8 -4 B n 9 -3 B HIS -2 n 10 HIS -2 B HIS -1 n 11 HIS -1 B HIS 0 n 12 HIS 0 B MSE 1 n 13 MSE 1 B LEU 2 n 14 LEU 2 B ILE 3 n 15 ILE 3 B LEU 4 n 16 LEU 4 B THR 5 n 17 THR 5 B ARG 6 n 18 ARG 6 B ARG 7 n 19 ARG 7 B VAL 8 n 20 VAL 8 B GLY 9 n 21 GLY 9 B GLU 10 n 22 GLU 10 B THR 11 n 23 THR 11 B LEU 12 n 24 LEU 12 B MSE 13 n 25 MSE 13 B VAL 14 n 26 VAL 14 B GLY 15 n 27 GLY 15 B ASP 16 n 28 ASP 16 B ASP 17 n 29 ASP 17 B VAL 18 n 30 VAL 18 B THR 19 n 31 THR 19 B VAL 20 n 32 VAL 20 B THR 21 n 33 THR 21 B VAL 22 n 34 VAL 22 B LEU 23 n 35 LEU 23 B GLY 24 n 36 GLY 24 B VAL 25 n 37 VAL 25 B LYS 26 n 38 LYS 26 B GLY 27 n 39 GLY 27 B ASN 28 n 40 ASN 28 B GLN 29 n 41 GLN 29 B VAL 30 n 42 VAL 30 B ARG 31 n 43 ARG 31 B ILE 32 n 44 ILE 32 B GLY 33 n 45 GLY 33 B VAL 34 n 46 VAL 34 B ASN 35 n 47 ASN 35 B ALA 36 n 48 ALA 36 B PRO 37 n 49 PRO 37 B LYS 38 n 50 LYS 38 B GLU 39 n 51 GLU 39 B VAL 40 n 52 VAL 40 B ALA 41 n 53 ALA 41 B VAL 42 n 54 VAL 42 B HIS 43 n 55 HIS 43 B ARG 44 n 56 ARG 44 B GLU 45 n 57 GLU 45 B GLU 46 n 58 GLU 46 B ILE 47 n 59 ILE 47 B TYR 48 n 60 TYR 48 B GLN 49 n 61 GLN 49 B ARG 50 n 62 ARG 50 B ILE 51 n 63 ILE 51 B GLN 52 n 64 GLN 52 B LYS 53 n 65 LYS 53 B n 66 54 B n 67 55 B n 68 56 B n 69 57 B n 70 58 B n 71 59 B n 72 60 B n 73 61 B 3.1940 -0.9537 0.5596 2.0674 -0.2403 5.3954 -0.0972 -0.0845 0.0426 0.2217 0.1000 -0.1059 0.0139 -0.1244 -0.0028 -0.1793 0.0058 0.0026 -0.0818 -0.0117 -0.1425 refined 1.3750 28.2070 36.4930 X-RAY DIFFRACTION 2.3546 -0.2458 -0.3428 3.1313 -0.5645 4.9730 -0.0555 0.0052 0.0399 -0.0940 0.0644 -0.1521 -0.0459 -0.0921 -0.0089 -0.2554 0.0059 0.0103 -0.0472 -0.0173 -0.1302 refined -0.8920 32.7110 37.3080 X-RAY DIFFRACTION A -1 A 11 A 54 A 66 X-RAY DIFFRACTION 1 ALL B -2 B 10 B 53 B 65 X-RAY DIFFRACTION 2 ALL author_and_software_defined_assembly PISA 2 dimeric 4080 -25 6850 A MSE 1 SELENOMETHIONINE A MSE 13 MET A MSE 13 SELENOMETHIONINE A MSE 25 MET B MSE 1 SELENOMETHIONINE B MSE 13 MET B MSE 13 SELENOMETHIONINE B MSE 25 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 2 A N LEU 14 B O VAL 34 B O VAL 46 B O GLN 29 B O GLN 41 B N LYS 26 B N LYS 38 B O VAL 20 B O VAL 32 B N LEU 12 B N LEU 24 B O MSE 13 B O MSE 25 A N HIS 43 A N HIS 55 B O LEU 2 B O LEU 14 A N VAL 34 A N VAL 46 A O ARG 31 A O ARG 43 A N GLY 24 A N GLY 36 A O VAL 20 A O VAL 32 A N LEU 12 A N LEU 24 A N MSE 13 A N MSE 25 B O HIS 43 B O HIS 55 1 A CG HIS -1 A CG HIS 11 1 Y 1 A ND1 HIS -1 A ND1 HIS 11 1 Y 1 A CD2 HIS -1 A CD2 HIS 11 1 Y 1 A CE1 HIS -1 A CE1 HIS 11 1 Y 1 A NE2 HIS -1 A NE2 HIS 11 1 Y 1 A CD1 LEU 2 A CD1 LEU 14 1 Y 1 A CD2 LEU 2 A CD2 LEU 14 1 Y 1 A OD1 ASP 16 A OD1 ASP 28 1 Y 1 A OD2 ASP 16 A OD2 ASP 28 1 Y 1 A CG ASP 17 A CG ASP 29 1 Y 1 A OD1 ASP 17 A OD1 ASP 29 1 Y 1 A OD2 ASP 17 A OD2 ASP 29 1 Y 1 A CE LYS 26 A CE LYS 38 1 Y 1 A NZ LYS 26 A NZ LYS 38 1 Y 1 A CG LYS 38 A CG LYS 50 1 Y 1 A CD LYS 38 A CD LYS 50 1 Y 1 A CE LYS 38 A CE LYS 50 1 Y 1 A NZ LYS 38 A NZ LYS 50 1 Y 1 A CE LYS 53 A CE LYS 65 1 Y 1 A NZ LYS 53 A NZ LYS 65 1 Y 1 B CG LYS 26 B CG LYS 38 1 Y 1 B CD LYS 26 B CD LYS 38 1 Y 1 B CE LYS 26 B CE LYS 38 1 Y 1 B NZ LYS 26 B NZ LYS 38 1 Y 1 B CG LYS 38 B CG LYS 50 1 Y 1 B CD LYS 38 B CD LYS 50 1 Y 1 B CE LYS 38 B CE LYS 50 1 Y 1 B NZ LYS 38 B NZ LYS 50 1 Y 1 A MSE -11 A MSE 1 1 Y 1 A GLY -10 A GLY 2 1 Y 1 A SER -9 A SER 3 1 Y 1 A ASP -8 A ASP 4 1 Y 1 A LYS -7 A LYS 5 1 Y 1 A ILE -6 A ILE 6 1 Y 1 A HIS -5 A HIS 7 1 Y 1 A HIS -4 A HIS 8 1 Y 1 A HIS -3 A HIS 9 1 Y 1 A HIS -2 A HIS 10 1 Y 1 A ASP 56 A ASP 68 1 Y 1 A GLN 57 A GLN 69 1 Y 1 A GLU 58 A GLU 70 1 Y 1 A PRO 59 A PRO 71 1 Y 1 A ASN 60 A ASN 72 1 Y 1 A HIS 61 A HIS 73 1 Y 1 B MSE -11 B MSE 1 1 Y 1 B GLY -10 B GLY 2 1 Y 1 B SER -9 B SER 3 1 Y 1 B ASP -8 B ASP 4 1 Y 1 B LYS -7 B LYS 5 1 Y 1 B ILE -6 B ILE 6 1 Y 1 B HIS -5 B HIS 7 1 Y 1 B HIS -4 B HIS 8 1 Y 1 B HIS -3 B HIS 9 1 Y 1 B GLU 54 B GLU 66 1 Y 1 B LYS 55 B LYS 67 1 Y 1 B ASP 56 B ASP 68 1 Y 1 B GLN 57 B GLN 69 1 Y 1 B GLU 58 B GLU 70 1 Y 1 B PRO 59 B PRO 71 1 Y 1 B ASN 60 B ASN 72 1 Y 1 B HIS 61 B HIS 73 1 Y 43.776 4.76 0.00 0.00 -1.02 0.00 -3.74 0.950 0.930 NO DENSITY FOR RESIDUES A56-62, B54-62. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 0.27545 0.21848 0.22092 2.05 24.59 422 8281 4.8 97.47 13.773 0.170 RANDOM LIKELY RESIDUAL 1 THROUGHOUT MAD 0.202 0.191 0.80 0.80 1.20 MAXIMUM LIKELIHOOD WITH PHASES MASK 2.05 24.59 23 891 0 0 868 0.017 0.022 887 0.002 0.020 876 1.568 1.943 1198 0.775 3.000 2002 7.227 5.000 111 37.225 22.500 40 15.803 15.000 164 21.452 15.000 11 0.090 0.200 148 0.005 0.020 970 0.001 0.020 173 0.192 0.200 126 0.199 0.200 837 0.090 0.200 593 0.138 0.200 28 0.235 0.200 5 0.209 0.200 25 0.090 0.200 2 2.230 3.000 569 0.615 3.000 238 3.085 5.000 907 5.515 8.000 336 8.061 11.000 291 0.170 0.200 397 1 B 1 767 X-RAY DIFFRACTION medium positional 0.63 0.50 1 B 1 767 X-RAY DIFFRACTION medium thermal 0.99 2.00 0.4 0.302 2.104 37 519 20 6.65 84.89 47.80 2.050 27.23 1VPZ 8735 0.075 1 11.4 3.5 97.8 2.05 2.10 1.7 562 0.365 1 2.8 85.4 data reduction MOSFLM data scaling SCALA 4.2) phasing SOLVE refinement REFMAC data scaling CCP4 (SCALA) Crystal structure of a putative carbon storage regulator protein (csra, pa0905) from pseudomonas aeruginosa at 2.05 A resolution 1 N N 1 N N 2 N N 2 N N A GLU 45 A GLU 57 HELX_P A LYS 55 A LYS 67 1 1 11 B GLU 45 B GLU 57 HELX_P B GLN 52 B GLN 64 1 2 8 covale 1.319 both A HIS 0 A C HIS 12 1_555 A MSE 1 A N MSE 13 1_555 covale 1.326 both A MSE 1 A C MSE 13 1_555 A LEU 2 A N LEU 14 1_555 covale 1.321 both A LEU 12 A C LEU 24 1_555 A MSE 13 A N MSE 25 1_555 covale 1.318 both A MSE 13 A C MSE 25 1_555 A VAL 14 A N VAL 26 1_555 covale 1.322 both B HIS 0 B C HIS 12 1_555 B MSE 1 B N MSE 13 1_555 covale 1.314 both B MSE 1 B C MSE 13 1_555 B LEU 2 B N LEU 14 1_555 covale 1.319 both B LEU 12 B C LEU 24 1_555 B MSE 13 B N MSE 25 1_555 covale 1.335 both B MSE 13 B C MSE 25 1_555 B VAL 14 B N VAL 26 1_555 RNA BINDING PROTEIN Csra-like fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, rna binding protein B A B 1 B MSE 13 B 53 B LYS 65 4 A 1 A MSE 13 A 53 A LYS 65 4 CSRA_PSEAE UNP 1 1 O69078 MLILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEKDQEPNH 1 61 1VPZ 1 61 O69078 A 1 13 73 1 61 1VPZ 1 61 O69078 B 1 13 73 1 expression tag MSE -11 1VPZ A O69078 UNP 1 1 expression tag GLY -10 1VPZ A O69078 UNP 2 1 expression tag SER -9 1VPZ A O69078 UNP 3 1 expression tag ASP -8 1VPZ A O69078 UNP 4 1 expression tag LYS -7 1VPZ A O69078 UNP 5 1 expression tag ILE -6 1VPZ A O69078 UNP 6 1 expression tag HIS -5 1VPZ A O69078 UNP 7 1 expression tag HIS -4 1VPZ A O69078 UNP 8 1 expression tag HIS -3 1VPZ A O69078 UNP 9 1 expression tag HIS -2 1VPZ A O69078 UNP 10 1 expression tag HIS -1 1VPZ A O69078 UNP 11 1 expression tag HIS 0 1VPZ A O69078 UNP 12 1 MET modified residue MSE 1 1VPZ A O69078 UNP 1 13 1 MET modified residue MSE 13 1VPZ A O69078 UNP 13 25 2 expression tag MSE -11 1VPZ B O69078 UNP 1 2 expression tag GLY -10 1VPZ B O69078 UNP 2 2 expression tag SER -9 1VPZ B O69078 UNP 3 2 expression tag ASP -8 1VPZ B O69078 UNP 4 2 expression tag LYS -7 1VPZ B O69078 UNP 5 2 expression tag ILE -6 1VPZ B O69078 UNP 6 2 expression tag HIS -5 1VPZ B O69078 UNP 7 2 expression tag HIS -4 1VPZ B O69078 UNP 8 2 expression tag HIS -3 1VPZ B O69078 UNP 9 2 expression tag HIS -2 1VPZ B O69078 UNP 10 2 expression tag HIS -1 1VPZ B O69078 UNP 11 2 expression tag HIS 0 1VPZ B O69078 UNP 12 2 MET modified residue MSE 1 1VPZ B O69078 UNP 1 13 2 MET modified residue MSE 13 1VPZ B O69078 UNP 13 25 5 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 2 A LEU 14 A ARG 7 A ARG 19 B GLN 29 B GLN 41 B ASN 35 B ASN 47 B VAL 18 B VAL 30 B LYS 26 B LYS 38 B THR 11 B THR 23 B VAL 14 B VAL 26 A VAL 42 A VAL 54 A ARG 44 A ARG 56 B HIS -1 B HIS 11 B ARG 7 B ARG 19 A GLN 29 A GLN 41 A PRO 37 A PRO 49 A VAL 18 A VAL 30 A LYS 26 A LYS 38 A THR 11 A THR 23 A VAL 14 A VAL 26 B VAL 42 B VAL 54 B ARG 44 B ARG 56 20 C 2 2 21