0.020381
0.000000
0.000000
0.000000
0.017646
0.000000
0.000000
0.000000
0.010149
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
49.066
56.669
98.533
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins
PSFGEY
0867
0887-3585
61
449
453
10.1002/prot.20502
16104018
Crystal structure of the global regulatory protein CsrA from Pseudomonas putida at 2.05 A resolution reveals a new fold.
2005
10.2210/pdb1vpz/pdb
pdb_00001vpz
100
1
1
fixed-height exit beam, toroidal focusing mirror
CCD
2004-11-10
ADSC
Double-crystal Si(111)
MAD
M
x-ray
1
0.979508
1.0
0.961114
1.0
5.0.2
ALS
0.979508
SYNCHROTRON
ALS BEAMLINE 5.0.2
5.0.2
ALS
0.979508,0.961114
SYNCHROTRON
ALS BEAMLINE 5.0.2
8522.276
Carbon storage regulator homolog
2
man
polymer
18.015
water
23
nat
water
no
yes
(MSE)GSDKIHHHHHH(MSE)LILTRRVGETL(MSE)VGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEKD
QEPNH
MGSDKIHHHHHHMLILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEKDQEPNH
A,B
357779
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Pseudomonas
Escherichia
sample
csrA
287
Pseudomonas aeruginosa
562
Escherichia coli
Plasmid
1
2.71
54.29
VAPOR DIFFUSION,SITTING DROP,NANODROP
3.7
30.0% MPD, 0.1M Phosphate Citrate pH 3.7, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
software
database_2
pdbx_database_related
struct_conn
struct_ref_seq_dif
repository
Initial release
Version format compliance
Advisory
Version format compliance
Refinement description
Database references
Derived calculations
1
0
2004-12-14
1
1
2008-04-26
1
2
2011-07-13
1
3
2017-10-04
1
4
2023-01-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_related.db_name
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2004-11-24
REL
REL
HOH
water
HOH
2
2
HOH
HOH
62
A
HOH
4
2
HOH
HOH
63
A
HOH
5
2
HOH
HOH
64
A
HOH
11
2
HOH
HOH
65
A
HOH
13
2
HOH
HOH
66
A
HOH
16
2
HOH
HOH
67
A
HOH
17
2
HOH
HOH
68
A
HOH
18
2
HOH
HOH
69
A
HOH
22
2
HOH
HOH
70
A
HOH
23
2
HOH
HOH
71
A
HOH
24
2
HOH
HOH
72
A
HOH
1
2
HOH
HOH
62
B
HOH
3
2
HOH
HOH
63
B
HOH
6
2
HOH
HOH
64
B
HOH
7
2
HOH
HOH
65
B
HOH
8
2
HOH
HOH
66
B
HOH
9
2
HOH
HOH
67
B
HOH
10
2
HOH
HOH
68
B
HOH
12
2
HOH
HOH
69
B
HOH
14
2
HOH
HOH
70
B
HOH
15
2
HOH
HOH
71
B
HOH
19
2
HOH
HOH
72
B
HOH
20
2
HOH
HOH
73
B
n
1
-11
A
n
2
-10
A
n
3
-9
A
n
4
-8
A
n
5
-7
A
n
6
-6
A
n
7
-5
A
n
8
-4
A
n
9
-3
A
n
10
-2
A
HIS
-1
n
11
HIS
-1
A
HIS
0
n
12
HIS
0
A
MSE
1
n
13
MSE
1
A
LEU
2
n
14
LEU
2
A
ILE
3
n
15
ILE
3
A
LEU
4
n
16
LEU
4
A
THR
5
n
17
THR
5
A
ARG
6
n
18
ARG
6
A
ARG
7
n
19
ARG
7
A
VAL
8
n
20
VAL
8
A
GLY
9
n
21
GLY
9
A
GLU
10
n
22
GLU
10
A
THR
11
n
23
THR
11
A
LEU
12
n
24
LEU
12
A
MSE
13
n
25
MSE
13
A
VAL
14
n
26
VAL
14
A
GLY
15
n
27
GLY
15
A
ASP
16
n
28
ASP
16
A
ASP
17
n
29
ASP
17
A
VAL
18
n
30
VAL
18
A
THR
19
n
31
THR
19
A
VAL
20
n
32
VAL
20
A
THR
21
n
33
THR
21
A
VAL
22
n
34
VAL
22
A
LEU
23
n
35
LEU
23
A
GLY
24
n
36
GLY
24
A
VAL
25
n
37
VAL
25
A
LYS
26
n
38
LYS
26
A
GLY
27
n
39
GLY
27
A
ASN
28
n
40
ASN
28
A
GLN
29
n
41
GLN
29
A
VAL
30
n
42
VAL
30
A
ARG
31
n
43
ARG
31
A
ILE
32
n
44
ILE
32
A
GLY
33
n
45
GLY
33
A
VAL
34
n
46
VAL
34
A
ASN
35
n
47
ASN
35
A
ALA
36
n
48
ALA
36
A
PRO
37
n
49
PRO
37
A
LYS
38
n
50
LYS
38
A
GLU
39
n
51
GLU
39
A
VAL
40
n
52
VAL
40
A
ALA
41
n
53
ALA
41
A
VAL
42
n
54
VAL
42
A
HIS
43
n
55
HIS
43
A
ARG
44
n
56
ARG
44
A
GLU
45
n
57
GLU
45
A
GLU
46
n
58
GLU
46
A
ILE
47
n
59
ILE
47
A
TYR
48
n
60
TYR
48
A
GLN
49
n
61
GLN
49
A
ARG
50
n
62
ARG
50
A
ILE
51
n
63
ILE
51
A
GLN
52
n
64
GLN
52
A
LYS
53
n
65
LYS
53
A
GLU
54
n
66
GLU
54
A
LYS
55
n
67
LYS
55
A
n
68
56
A
n
69
57
A
n
70
58
A
n
71
59
A
n
72
60
A
n
73
61
A
n
1
-11
B
n
2
-10
B
n
3
-9
B
n
4
-8
B
n
5
-7
B
n
6
-6
B
n
7
-5
B
n
8
-4
B
n
9
-3
B
HIS
-2
n
10
HIS
-2
B
HIS
-1
n
11
HIS
-1
B
HIS
0
n
12
HIS
0
B
MSE
1
n
13
MSE
1
B
LEU
2
n
14
LEU
2
B
ILE
3
n
15
ILE
3
B
LEU
4
n
16
LEU
4
B
THR
5
n
17
THR
5
B
ARG
6
n
18
ARG
6
B
ARG
7
n
19
ARG
7
B
VAL
8
n
20
VAL
8
B
GLY
9
n
21
GLY
9
B
GLU
10
n
22
GLU
10
B
THR
11
n
23
THR
11
B
LEU
12
n
24
LEU
12
B
MSE
13
n
25
MSE
13
B
VAL
14
n
26
VAL
14
B
GLY
15
n
27
GLY
15
B
ASP
16
n
28
ASP
16
B
ASP
17
n
29
ASP
17
B
VAL
18
n
30
VAL
18
B
THR
19
n
31
THR
19
B
VAL
20
n
32
VAL
20
B
THR
21
n
33
THR
21
B
VAL
22
n
34
VAL
22
B
LEU
23
n
35
LEU
23
B
GLY
24
n
36
GLY
24
B
VAL
25
n
37
VAL
25
B
LYS
26
n
38
LYS
26
B
GLY
27
n
39
GLY
27
B
ASN
28
n
40
ASN
28
B
GLN
29
n
41
GLN
29
B
VAL
30
n
42
VAL
30
B
ARG
31
n
43
ARG
31
B
ILE
32
n
44
ILE
32
B
GLY
33
n
45
GLY
33
B
VAL
34
n
46
VAL
34
B
ASN
35
n
47
ASN
35
B
ALA
36
n
48
ALA
36
B
PRO
37
n
49
PRO
37
B
LYS
38
n
50
LYS
38
B
GLU
39
n
51
GLU
39
B
VAL
40
n
52
VAL
40
B
ALA
41
n
53
ALA
41
B
VAL
42
n
54
VAL
42
B
HIS
43
n
55
HIS
43
B
ARG
44
n
56
ARG
44
B
GLU
45
n
57
GLU
45
B
GLU
46
n
58
GLU
46
B
ILE
47
n
59
ILE
47
B
TYR
48
n
60
TYR
48
B
GLN
49
n
61
GLN
49
B
ARG
50
n
62
ARG
50
B
ILE
51
n
63
ILE
51
B
GLN
52
n
64
GLN
52
B
LYS
53
n
65
LYS
53
B
n
66
54
B
n
67
55
B
n
68
56
B
n
69
57
B
n
70
58
B
n
71
59
B
n
72
60
B
n
73
61
B
3.1940
-0.9537
0.5596
2.0674
-0.2403
5.3954
-0.0972
-0.0845
0.0426
0.2217
0.1000
-0.1059
0.0139
-0.1244
-0.0028
-0.1793
0.0058
0.0026
-0.0818
-0.0117
-0.1425
refined
1.3750
28.2070
36.4930
X-RAY DIFFRACTION
2.3546
-0.2458
-0.3428
3.1313
-0.5645
4.9730
-0.0555
0.0052
0.0399
-0.0940
0.0644
-0.1521
-0.0459
-0.0921
-0.0089
-0.2554
0.0059
0.0103
-0.0472
-0.0173
-0.1302
refined
-0.8920
32.7110
37.3080
X-RAY DIFFRACTION
A
-1
A
11
A
54
A
66
X-RAY DIFFRACTION
1
ALL
B
-2
B
10
B
53
B
65
X-RAY DIFFRACTION
2
ALL
author_and_software_defined_assembly
PISA
2
dimeric
4080
-25
6850
A
MSE
1
SELENOMETHIONINE
A
MSE
13
MET
A
MSE
13
SELENOMETHIONINE
A
MSE
25
MET
B
MSE
1
SELENOMETHIONINE
B
MSE
13
MET
B
MSE
13
SELENOMETHIONINE
B
MSE
25
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
2
A
N
LEU
14
B
O
VAL
34
B
O
VAL
46
B
O
GLN
29
B
O
GLN
41
B
N
LYS
26
B
N
LYS
38
B
O
VAL
20
B
O
VAL
32
B
N
LEU
12
B
N
LEU
24
B
O
MSE
13
B
O
MSE
25
A
N
HIS
43
A
N
HIS
55
B
O
LEU
2
B
O
LEU
14
A
N
VAL
34
A
N
VAL
46
A
O
ARG
31
A
O
ARG
43
A
N
GLY
24
A
N
GLY
36
A
O
VAL
20
A
O
VAL
32
A
N
LEU
12
A
N
LEU
24
A
N
MSE
13
A
N
MSE
25
B
O
HIS
43
B
O
HIS
55
1
A
CG
HIS
-1
A
CG
HIS
11
1
Y
1
A
ND1
HIS
-1
A
ND1
HIS
11
1
Y
1
A
CD2
HIS
-1
A
CD2
HIS
11
1
Y
1
A
CE1
HIS
-1
A
CE1
HIS
11
1
Y
1
A
NE2
HIS
-1
A
NE2
HIS
11
1
Y
1
A
CD1
LEU
2
A
CD1
LEU
14
1
Y
1
A
CD2
LEU
2
A
CD2
LEU
14
1
Y
1
A
OD1
ASP
16
A
OD1
ASP
28
1
Y
1
A
OD2
ASP
16
A
OD2
ASP
28
1
Y
1
A
CG
ASP
17
A
CG
ASP
29
1
Y
1
A
OD1
ASP
17
A
OD1
ASP
29
1
Y
1
A
OD2
ASP
17
A
OD2
ASP
29
1
Y
1
A
CE
LYS
26
A
CE
LYS
38
1
Y
1
A
NZ
LYS
26
A
NZ
LYS
38
1
Y
1
A
CG
LYS
38
A
CG
LYS
50
1
Y
1
A
CD
LYS
38
A
CD
LYS
50
1
Y
1
A
CE
LYS
38
A
CE
LYS
50
1
Y
1
A
NZ
LYS
38
A
NZ
LYS
50
1
Y
1
A
CE
LYS
53
A
CE
LYS
65
1
Y
1
A
NZ
LYS
53
A
NZ
LYS
65
1
Y
1
B
CG
LYS
26
B
CG
LYS
38
1
Y
1
B
CD
LYS
26
B
CD
LYS
38
1
Y
1
B
CE
LYS
26
B
CE
LYS
38
1
Y
1
B
NZ
LYS
26
B
NZ
LYS
38
1
Y
1
B
CG
LYS
38
B
CG
LYS
50
1
Y
1
B
CD
LYS
38
B
CD
LYS
50
1
Y
1
B
CE
LYS
38
B
CE
LYS
50
1
Y
1
B
NZ
LYS
38
B
NZ
LYS
50
1
Y
1
A
MSE
-11
A
MSE
1
1
Y
1
A
GLY
-10
A
GLY
2
1
Y
1
A
SER
-9
A
SER
3
1
Y
1
A
ASP
-8
A
ASP
4
1
Y
1
A
LYS
-7
A
LYS
5
1
Y
1
A
ILE
-6
A
ILE
6
1
Y
1
A
HIS
-5
A
HIS
7
1
Y
1
A
HIS
-4
A
HIS
8
1
Y
1
A
HIS
-3
A
HIS
9
1
Y
1
A
HIS
-2
A
HIS
10
1
Y
1
A
ASP
56
A
ASP
68
1
Y
1
A
GLN
57
A
GLN
69
1
Y
1
A
GLU
58
A
GLU
70
1
Y
1
A
PRO
59
A
PRO
71
1
Y
1
A
ASN
60
A
ASN
72
1
Y
1
A
HIS
61
A
HIS
73
1
Y
1
B
MSE
-11
B
MSE
1
1
Y
1
B
GLY
-10
B
GLY
2
1
Y
1
B
SER
-9
B
SER
3
1
Y
1
B
ASP
-8
B
ASP
4
1
Y
1
B
LYS
-7
B
LYS
5
1
Y
1
B
ILE
-6
B
ILE
6
1
Y
1
B
HIS
-5
B
HIS
7
1
Y
1
B
HIS
-4
B
HIS
8
1
Y
1
B
HIS
-3
B
HIS
9
1
Y
1
B
GLU
54
B
GLU
66
1
Y
1
B
LYS
55
B
LYS
67
1
Y
1
B
ASP
56
B
ASP
68
1
Y
1
B
GLN
57
B
GLN
69
1
Y
1
B
GLU
58
B
GLU
70
1
Y
1
B
PRO
59
B
PRO
71
1
Y
1
B
ASN
60
B
ASN
72
1
Y
1
B
HIS
61
B
HIS
73
1
Y
43.776
4.76
0.00
0.00
-1.02
0.00
-3.74
0.950
0.930
NO DENSITY FOR RESIDUES A56-62, B54-62. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.27545
0.21848
0.22092
2.05
24.59
422
8281
4.8
97.47
13.773
0.170
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MAD
0.202
0.191
0.80
0.80
1.20
MAXIMUM LIKELIHOOD WITH PHASES
MASK
2.05
24.59
23
891
0
0
868
0.017
0.022
887
0.002
0.020
876
1.568
1.943
1198
0.775
3.000
2002
7.227
5.000
111
37.225
22.500
40
15.803
15.000
164
21.452
15.000
11
0.090
0.200
148
0.005
0.020
970
0.001
0.020
173
0.192
0.200
126
0.199
0.200
837
0.090
0.200
593
0.138
0.200
28
0.235
0.200
5
0.209
0.200
25
0.090
0.200
2
2.230
3.000
569
0.615
3.000
238
3.085
5.000
907
5.515
8.000
336
8.061
11.000
291
0.170
0.200
397
1
B
1
767
X-RAY DIFFRACTION
medium positional
0.63
0.50
1
B
1
767
X-RAY DIFFRACTION
medium thermal
0.99
2.00
0.4
0.302
2.104
37
519
20
6.65
84.89
47.80
2.050
27.23
1VPZ
8735
0.075
1
11.4
3.5
97.8
2.05
2.10
1.7
562
0.365
1
2.8
85.4
data reduction
MOSFLM
data scaling
SCALA
4.2)
phasing
SOLVE
refinement
REFMAC
data scaling
CCP4
(SCALA)
Crystal structure of a putative carbon storage regulator protein (csra, pa0905) from pseudomonas aeruginosa at 2.05 A resolution
1
N
N
1
N
N
2
N
N
2
N
N
A
GLU
45
A
GLU
57
HELX_P
A
LYS
55
A
LYS
67
1
1
11
B
GLU
45
B
GLU
57
HELX_P
B
GLN
52
B
GLN
64
1
2
8
covale
1.319
both
A
HIS
0
A
C
HIS
12
1_555
A
MSE
1
A
N
MSE
13
1_555
covale
1.326
both
A
MSE
1
A
C
MSE
13
1_555
A
LEU
2
A
N
LEU
14
1_555
covale
1.321
both
A
LEU
12
A
C
LEU
24
1_555
A
MSE
13
A
N
MSE
25
1_555
covale
1.318
both
A
MSE
13
A
C
MSE
25
1_555
A
VAL
14
A
N
VAL
26
1_555
covale
1.322
both
B
HIS
0
B
C
HIS
12
1_555
B
MSE
1
B
N
MSE
13
1_555
covale
1.314
both
B
MSE
1
B
C
MSE
13
1_555
B
LEU
2
B
N
LEU
14
1_555
covale
1.319
both
B
LEU
12
B
C
LEU
24
1_555
B
MSE
13
B
N
MSE
25
1_555
covale
1.335
both
B
MSE
13
B
C
MSE
25
1_555
B
VAL
14
B
N
VAL
26
1_555
RNA BINDING PROTEIN
Csra-like fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, rna binding protein
B
A
B
1
B
MSE
13
B
53
B
LYS
65
4
A
1
A
MSE
13
A
53
A
LYS
65
4
CSRA_PSEAE
UNP
1
1
O69078
MLILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEKDQEPNH
1
61
1VPZ
1
61
O69078
A
1
13
73
1
61
1VPZ
1
61
O69078
B
1
13
73
1
expression tag
MSE
-11
1VPZ
A
O69078
UNP
1
1
expression tag
GLY
-10
1VPZ
A
O69078
UNP
2
1
expression tag
SER
-9
1VPZ
A
O69078
UNP
3
1
expression tag
ASP
-8
1VPZ
A
O69078
UNP
4
1
expression tag
LYS
-7
1VPZ
A
O69078
UNP
5
1
expression tag
ILE
-6
1VPZ
A
O69078
UNP
6
1
expression tag
HIS
-5
1VPZ
A
O69078
UNP
7
1
expression tag
HIS
-4
1VPZ
A
O69078
UNP
8
1
expression tag
HIS
-3
1VPZ
A
O69078
UNP
9
1
expression tag
HIS
-2
1VPZ
A
O69078
UNP
10
1
expression tag
HIS
-1
1VPZ
A
O69078
UNP
11
1
expression tag
HIS
0
1VPZ
A
O69078
UNP
12
1
MET
modified residue
MSE
1
1VPZ
A
O69078
UNP
1
13
1
MET
modified residue
MSE
13
1VPZ
A
O69078
UNP
13
25
2
expression tag
MSE
-11
1VPZ
B
O69078
UNP
1
2
expression tag
GLY
-10
1VPZ
B
O69078
UNP
2
2
expression tag
SER
-9
1VPZ
B
O69078
UNP
3
2
expression tag
ASP
-8
1VPZ
B
O69078
UNP
4
2
expression tag
LYS
-7
1VPZ
B
O69078
UNP
5
2
expression tag
ILE
-6
1VPZ
B
O69078
UNP
6
2
expression tag
HIS
-5
1VPZ
B
O69078
UNP
7
2
expression tag
HIS
-4
1VPZ
B
O69078
UNP
8
2
expression tag
HIS
-3
1VPZ
B
O69078
UNP
9
2
expression tag
HIS
-2
1VPZ
B
O69078
UNP
10
2
expression tag
HIS
-1
1VPZ
B
O69078
UNP
11
2
expression tag
HIS
0
1VPZ
B
O69078
UNP
12
2
MET
modified residue
MSE
1
1VPZ
B
O69078
UNP
1
13
2
MET
modified residue
MSE
13
1VPZ
B
O69078
UNP
13
25
5
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
2
A
LEU
14
A
ARG
7
A
ARG
19
B
GLN
29
B
GLN
41
B
ASN
35
B
ASN
47
B
VAL
18
B
VAL
30
B
LYS
26
B
LYS
38
B
THR
11
B
THR
23
B
VAL
14
B
VAL
26
A
VAL
42
A
VAL
54
A
ARG
44
A
ARG
56
B
HIS
-1
B
HIS
11
B
ARG
7
B
ARG
19
A
GLN
29
A
GLN
41
A
PRO
37
A
PRO
49
A
VAL
18
A
VAL
30
A
LYS
26
A
LYS
38
A
THR
11
A
THR
23
A
VAL
14
A
VAL
26
B
VAL
42
B
VAL
54
B
ARG
44
B
ARG
56
20
C 2 2 21