0.015140 0.000000 0.000000 0.000000 0.015140 0.000000 0.000000 0.000000 0.012247 0.00000 0.00000 0.00000 CIS PROLINE - PRO 73 Bujacz, G. Jaskolski, M. Alexandratos, J. Wlodawer, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 66.050 66.050 81.650 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C8 H18 N2 O4 S 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HEPES non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C5 H11 N O3 S 165.211 n HYDROXYETHYLCYSTEINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 4 89 96 10.1016/S0969-2126(96)00012-3 8805516 The catalytic domain of avian sarcoma virus integrase: conformation of the active-site residues in the presence of divalent cations. 1996 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295 1 IMAGE PLATE 1995-05-30 MAR scanner 300 mm plate M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE CRYSTALS SOAKED IN 500 MILLIMOLAR MGCL2 16767.285 INTEGRASE CATALYTIC CORE DOMAIN, RESIDUES 1 - 4, 52 - 209 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID 1 syn non-polymer 18.015 water 173 nat water no yes PLREGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGS(OCY) FTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFNL PLREGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSK STREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFNL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Alpharetrovirus Rous sarcoma virus Schmidt-Ruppin Escherichia sample ORIGINAL VIRAL DNA CLONE\: JU ET AL., J. VIROL. 33:1026-1033 (1980), ORIGINAL EXPRESSION CLONE\: TERRY ET AL., J. VIROL. 62:2358-2365 (1988), EXPRESSION CLONE FOR CORE\: KULKOSKY ET AL., J. VIROL. 206:448-456 (1995) 11889 Rous sarcoma virus (strain Schmidt-Ruppin) 562 Escherichia coli PRC23IN(52-207) 2.66 53.78 7.5 pH 7.5 THE PROTEIN WAS CRYSTALLIZED FROM 20% PEG 4000, 10% ISOPROPANOL, 100 MILLI-MOLAR HEPES PH 7.5. CRYSTALS WERE THEN SOAKED IN 500 MILLI-MOLAR MGCL2. repository Initial release Version format compliance Version format compliance 1 0 1996-04-03 1 1 2008-03-03 1 2 2011-07-13 Y 1995-11-29 REL MG MAGNESIUM ION EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HOH water THE APPARENT DISCREPANCY BETWEEN THE SEQUENCE PRESENTED HERE AND THE "POL_RSVP" SEQUENCE IS A RESULT OF VIRAL STRAIN VARIATION. THE STRAIN USED FOR THIS WORK, "ROUS SARCOMA VIRUS SCHMIDT-RUPPIN B", COMPARED TO "POL-RSVP" SEQUENCE DIFFERS AT TWO POSITIONS WITH THE CONSERVATIVE AMINO ACID RESIDUE DIFFERENCES NOTED (VAL -> ALA 101 AND ARG -> LYS 166). MG 250 2 MG MG 250 A EPE 261 3 EPE EPE 261 A HOH 262 4 HOH HOH 262 A HOH 263 4 HOH HOH 263 A HOH 264 4 HOH HOH 264 A HOH 265 4 HOH HOH 265 A HOH 266 4 HOH HOH 266 A HOH 267 4 HOH HOH 267 A HOH 268 4 HOH HOH 268 A HOH 269 4 HOH HOH 269 A HOH 270 4 HOH HOH 270 A HOH 271 4 HOH HOH 271 A HOH 272 4 HOH HOH 272 A HOH 273 4 HOH HOH 273 A HOH 274 4 HOH HOH 274 A HOH 275 4 HOH HOH 275 A HOH 276 4 HOH HOH 276 A HOH 277 4 HOH HOH 277 A HOH 278 4 HOH HOH 278 A HOH 279 4 HOH HOH 279 A HOH 280 4 HOH HOH 280 A HOH 281 4 HOH HOH 281 A HOH 282 4 HOH HOH 282 A HOH 283 4 HOH HOH 283 A HOH 284 4 HOH HOH 284 A HOH 285 4 HOH HOH 285 A HOH 286 4 HOH HOH 286 A HOH 287 4 HOH HOH 287 A HOH 288 4 HOH HOH 288 A HOH 289 4 HOH HOH 289 A HOH 290 4 HOH HOH 290 A HOH 291 4 HOH HOH 291 A HOH 292 4 HOH HOH 292 A HOH 293 4 HOH HOH 293 A HOH 294 4 HOH HOH 294 A HOH 295 4 HOH HOH 295 A HOH 296 4 HOH HOH 296 A HOH 297 4 HOH HOH 297 A HOH 298 4 HOH HOH 298 A HOH 299 4 HOH HOH 299 A HOH 300 4 HOH HOH 300 A HOH 301 4 HOH HOH 301 A HOH 302 4 HOH HOH 302 A HOH 303 4 HOH HOH 303 A HOH 304 4 HOH HOH 304 A HOH 305 4 HOH HOH 305 A HOH 306 4 HOH HOH 306 A HOH 307 4 HOH HOH 307 A HOH 308 4 HOH HOH 308 A HOH 309 4 HOH HOH 309 A HOH 310 4 HOH HOH 310 A HOH 311 4 HOH HOH 311 A HOH 312 4 HOH HOH 312 A HOH 313 4 HOH HOH 313 A HOH 314 4 HOH HOH 314 A HOH 315 4 HOH HOH 315 A HOH 316 4 HOH HOH 316 A HOH 317 4 HOH HOH 317 A HOH 318 4 HOH HOH 318 A HOH 319 4 HOH HOH 319 A HOH 320 4 HOH HOH 320 A HOH 321 4 HOH HOH 321 A HOH 322 4 HOH HOH 322 A HOH 323 4 HOH HOH 323 A HOH 324 4 HOH HOH 324 A HOH 325 4 HOH HOH 325 A HOH 326 4 HOH HOH 326 A HOH 327 4 HOH HOH 327 A HOH 328 4 HOH HOH 328 A HOH 329 4 HOH HOH 329 A HOH 330 4 HOH HOH 330 A HOH 331 4 HOH HOH 331 A HOH 332 4 HOH HOH 332 A HOH 333 4 HOH HOH 333 A HOH 334 4 HOH HOH 334 A HOH 335 4 HOH HOH 335 A HOH 336 4 HOH HOH 336 A HOH 337 4 HOH HOH 337 A HOH 338 4 HOH HOH 338 A HOH 339 4 HOH HOH 339 A HOH 340 4 HOH HOH 340 A HOH 341 4 HOH HOH 341 A HOH 342 4 HOH HOH 342 A HOH 343 4 HOH HOH 343 A HOH 344 4 HOH HOH 344 A HOH 345 4 HOH HOH 345 A HOH 346 4 HOH HOH 346 A HOH 347 4 HOH HOH 347 A HOH 348 4 HOH HOH 348 A HOH 349 4 HOH HOH 349 A HOH 350 4 HOH HOH 350 A HOH 351 4 HOH HOH 351 A HOH 352 4 HOH HOH 352 A HOH 353 4 HOH HOH 353 A HOH 354 4 HOH HOH 354 A HOH 355 4 HOH HOH 355 A HOH 356 4 HOH HOH 356 A HOH 357 4 HOH HOH 357 A HOH 358 4 HOH HOH 358 A HOH 359 4 HOH HOH 359 A HOH 360 4 HOH HOH 360 A HOH 361 4 HOH HOH 361 A HOH 362 4 HOH HOH 362 A HOH 363 4 HOH HOH 363 A HOH 364 4 HOH HOH 364 A HOH 365 4 HOH HOH 365 A HOH 366 4 HOH HOH 366 A HOH 367 4 HOH HOH 367 A HOH 368 4 HOH HOH 368 A HOH 369 4 HOH HOH 369 A HOH 370 4 HOH HOH 370 A HOH 371 4 HOH HOH 371 A HOH 372 4 HOH HOH 372 A HOH 373 4 HOH HOH 373 A HOH 374 4 HOH HOH 374 A HOH 375 4 HOH HOH 375 A HOH 376 4 HOH HOH 376 A HOH 377 4 HOH HOH 377 A HOH 378 4 HOH HOH 378 A HOH 379 4 HOH HOH 379 A HOH 380 4 HOH HOH 380 A HOH 381 4 HOH HOH 381 A HOH 382 4 HOH HOH 382 A HOH 383 4 HOH HOH 383 A HOH 384 4 HOH HOH 384 A HOH 385 4 HOH HOH 385 A HOH 386 4 HOH HOH 386 A HOH 387 4 HOH HOH 387 A HOH 388 4 HOH HOH 388 A HOH 389 4 HOH HOH 389 A HOH 390 4 HOH HOH 390 A HOH 391 4 HOH HOH 391 A HOH 392 4 HOH HOH 392 A HOH 393 4 HOH HOH 393 A HOH 394 4 HOH HOH 394 A HOH 395 4 HOH HOH 395 A HOH 396 4 HOH HOH 396 A HOH 397 4 HOH HOH 397 A HOH 398 4 HOH HOH 398 A HOH 399 4 HOH HOH 399 A HOH 400 4 HOH HOH 400 A HOH 401 4 HOH HOH 401 A HOH 402 4 HOH HOH 402 A HOH 403 4 HOH HOH 403 A HOH 404 4 HOH HOH 404 A HOH 405 4 HOH HOH 405 A HOH 406 4 HOH HOH 406 A HOH 407 4 HOH HOH 407 A HOH 408 4 HOH HOH 408 A HOH 409 4 HOH HOH 409 A HOH 410 4 HOH HOH 410 A HOH 411 4 HOH HOH 411 A HOH 412 4 HOH HOH 412 A HOH 413 4 HOH HOH 413 A HOH 414 4 HOH HOH 414 A HOH 415 4 HOH HOH 415 A HOH 416 4 HOH HOH 416 A HOH 417 4 HOH HOH 417 A HOH 418 4 HOH HOH 418 A HOH 419 4 HOH HOH 419 A HOH 420 4 HOH HOH 420 A HOH 421 4 HOH HOH 421 A HOH 422 4 HOH HOH 422 A HOH 423 4 HOH HOH 423 A HOH 424 4 HOH HOH 424 A HOH 425 4 HOH HOH 425 A HOH 426 4 HOH HOH 426 A HOH 427 4 HOH HOH 427 A HOH 428 4 HOH HOH 428 A HOH 429 4 HOH HOH 429 A HOH 430 4 HOH HOH 430 A HOH 431 4 HOH HOH 431 A HOH 432 4 HOH HOH 432 A HOH 433 4 HOH HOH 433 A HOH 434 4 HOH HOH 434 A n 1 50 A n 2 51 A n 3 52 A n 4 53 A GLY 54 n 5 GLY 54 A LEU 55 n 6 LEU 55 A GLY 56 n 7 GLY 56 A PRO 57 n 8 PRO 57 A LEU 58 n 9 LEU 58 A GLN 59 n 10 GLN 59 A ILE 60 n 11 ILE 60 A TRP 61 n 12 TRP 61 A GLN 62 n 13 GLN 62 A THR 63 n 14 THR 63 A ASP 64 n 15 ASP 64 A PHE 65 n 16 PHE 65 A THR 66 n 17 THR 66 A LEU 67 n 18 LEU 67 A GLU 68 n 19 GLU 68 A PRO 69 n 20 PRO 69 A ARG 70 n 21 ARG 70 A MET 71 n 22 MET 71 A ALA 72 n 23 ALA 72 A PRO 73 n 24 PRO 73 A ARG 74 n 25 ARG 74 A SER 75 n 26 SER 75 A TRP 76 n 27 TRP 76 A LEU 77 n 28 LEU 77 A ALA 78 n 29 ALA 78 A VAL 79 n 30 VAL 79 A THR 80 n 31 THR 80 A VAL 81 n 32 VAL 81 A ASP 82 n 33 ASP 82 A THR 83 n 34 THR 83 A ALA 84 n 35 ALA 84 A SER 85 n 36 SER 85 A SER 86 n 37 SER 86 A ALA 87 n 38 ALA 87 A ILE 88 n 39 ILE 88 A VAL 89 n 40 VAL 89 A VAL 90 n 41 VAL 90 A THR 91 n 42 THR 91 A GLN 92 n 43 GLN 92 A HIS 93 n 44 HIS 93 A GLY 94 n 45 GLY 94 A ARG 95 n 46 ARG 95 A VAL 96 n 47 VAL 96 A THR 97 n 48 THR 97 A SER 98 n 49 SER 98 A VAL 99 n 50 VAL 99 A ALA 100 n 51 ALA 100 A ALA 101 n 52 ALA 101 A GLN 102 n 53 GLN 102 A HIS 103 n 54 HIS 103 A HIS 104 n 55 HIS 104 A TRP 105 n 56 TRP 105 A ALA 106 n 57 ALA 106 A THR 107 n 58 THR 107 A ALA 108 n 59 ALA 108 A ILE 109 n 60 ILE 109 A ALA 110 n 61 ALA 110 A VAL 111 n 62 VAL 111 A LEU 112 n 63 LEU 112 A GLY 113 n 64 GLY 113 A ARG 114 n 65 ARG 114 A PRO 115 n 66 PRO 115 A LYS 116 n 67 LYS 116 A ALA 117 n 68 ALA 117 A ILE 118 n 69 ILE 118 A LYS 119 n 70 LYS 119 A THR 120 n 71 THR 120 A ASP 121 n 72 ASP 121 A ASN 122 n 73 ASN 122 A GLY 123 n 74 GLY 123 A SER 124 n 75 SER 124 A OCY 125 n 76 OCY 125 A PHE 126 n 77 PHE 126 A THR 127 n 78 THR 127 A SER 128 n 79 SER 128 A LYS 129 n 80 LYS 129 A SER 130 n 81 SER 130 A THR 131 n 82 THR 131 A ARG 132 n 83 ARG 132 A GLU 133 n 84 GLU 133 A TRP 134 n 85 TRP 134 A LEU 135 n 86 LEU 135 A ALA 136 n 87 ALA 136 A ARG 137 n 88 ARG 137 A TRP 138 n 89 TRP 138 A GLY 139 n 90 GLY 139 A ILE 140 n 91 ILE 140 A ALA 141 n 92 ALA 141 A HIS 142 n 93 HIS 142 A THR 143 n 94 THR 143 A THR 144 n 95 THR 144 A GLY 145 n 96 GLY 145 A ILE 146 n 97 ILE 146 A PRO 147 n 98 PRO 147 A GLY 148 n 99 GLY 148 A ASN 149 n 100 ASN 149 A SER 150 n 101 SER 150 A GLN 151 n 102 GLN 151 A GLY 152 n 103 GLY 152 A GLN 153 n 104 GLN 153 A ALA 154 n 105 ALA 154 A MET 155 n 106 MET 155 A VAL 156 n 107 VAL 156 A GLU 157 n 108 GLU 157 A ARG 158 n 109 ARG 158 A ALA 159 n 110 ALA 159 A ASN 160 n 111 ASN 160 A ARG 161 n 112 ARG 161 A LEU 162 n 113 LEU 162 A LEU 163 n 114 LEU 163 A LYS 164 n 115 LYS 164 A ASP 165 n 116 ASP 165 A LYS 166 n 117 LYS 166 A ILE 167 n 118 ILE 167 A ARG 168 n 119 ARG 168 A VAL 169 n 120 VAL 169 A LEU 170 n 121 LEU 170 A ALA 171 n 122 ALA 171 A GLU 172 n 123 GLU 172 A GLY 173 n 124 GLY 173 A ASP 174 n 125 ASP 174 A GLY 175 n 126 GLY 175 A PHE 176 n 127 PHE 176 A MET 177 n 128 MET 177 A LYS 178 n 129 LYS 178 A ARG 179 n 130 ARG 179 A ILE 180 n 131 ILE 180 A PRO 181 n 132 PRO 181 A THR 182 n 133 THR 182 A SER 183 n 134 SER 183 A LYS 184 n 135 LYS 184 A GLN 185 n 136 GLN 185 A GLY 186 n 137 GLY 186 A GLU 187 n 138 GLU 187 A LEU 188 n 139 LEU 188 A LEU 189 n 140 LEU 189 A ALA 190 n 141 ALA 190 A LYS 191 n 142 LYS 191 A ALA 192 n 143 ALA 192 A MET 193 n 144 MET 193 A TYR 194 n 145 TYR 194 A ALA 195 n 146 ALA 195 A LEU 196 n 147 LEU 196 A ASN 197 n 148 ASN 197 A HIS 198 n 149 HIS 198 A PHE 199 n 150 PHE 199 A n 151 200 A n 152 201 A author_defined_assembly 2 dimeric 1930 -21.0 15120 A ASP 121 A OD2 ASP 72 1_555 A MG 250 B MG MG 1_555 A HOH 262 D O HOH 1_555 86.4 A ASP 121 A OD2 ASP 72 1_555 A MG 250 B MG MG 1_555 A HOH 263 D O HOH 1_555 175.3 A HOH 262 D O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 263 D O HOH 1_555 89.3 A ASP 121 A OD2 ASP 72 1_555 A MG 250 B MG MG 1_555 A HOH 264 D O HOH 1_555 87.4 A HOH 262 D O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 264 D O HOH 1_555 94.5 A HOH 263 D O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 264 D O HOH 1_555 91.2 A ASP 121 A OD2 ASP 72 1_555 A MG 250 B MG MG 1_555 A HOH 265 D O HOH 1_555 89.6 A HOH 262 D O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 265 D O HOH 1_555 175.7 A HOH 263 D O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 265 D O HOH 1_555 94.8 A HOH 264 D O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 265 D O HOH 1_555 86.7 A ASP 121 A OD2 ASP 72 1_555 A MG 250 B MG MG 1_555 A ASP 64 A OD1 ASP 15 1_555 93.3 A HOH 262 D O HOH 1_555 A MG 250 B MG MG 1_555 A ASP 64 A OD1 ASP 15 1_555 93.0 A HOH 263 D O HOH 1_555 A MG 250 B MG MG 1_555 A ASP 64 A OD1 ASP 15 1_555 88.7 A HOH 264 D O HOH 1_555 A MG 250 B MG MG 1_555 A ASP 64 A OD1 ASP 15 1_555 172.5 A HOH 265 D O HOH 1_555 A MG 250 B MG MG 1_555 A ASP 64 A OD1 ASP 15 1_555 85.9 A OCY 125 HYDROXYETHYLCYSTEINE A OCY 76 CYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_556 y,x,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 81.6500000000 A O VAL 89 A O VAL 40 A N THR 80 A N THR 31 A O LEU 77 A O LEU 28 A N THR 66 A N THR 17 A O TRP 61 A O TRP 12 A N ALA 117 A N ALA 68 A O ILE 118 A O ILE 69 A N ALA 141 A N ALA 92 1 A PRO 50 A PRO 1 1 Y 1 A LEU 51 A LEU 2 1 Y 1 A ARG 52 A ARG 3 1 Y 1 A GLU 53 A GLU 4 1 Y 1 A ASN 200 A ASN 151 1 Y 1 A LEU 201 A LEU 152 1 Y 1 A A O O HOH HOH 295 335 2.09 1 A A O O HOH HOH 405 425 2.14 1 A A O O HOH HOH 282 347 2.16 1 A A O O HOH HOH 316 371 2.16 1 -8.10 0.50 120.30 112.20 A A A NE CZ NH2 ARG ARG ARG 70 70 70 N 1 -10.60 1.40 123.60 113.00 A A A CD NE CZ ARG ARG ARG 74 74 74 N 1 -3.12 0.50 120.30 117.18 A A A NE CZ NH1 ARG ARG ARG 74 74 74 N 1 -12.26 2.00 110.40 98.14 A A A CB CA C GLN GLN GLN 92 92 92 N 1 -3.98 0.50 120.30 116.32 A A A NE CZ NH1 ARG ARG ARG 95 95 95 N 1 3.25 0.50 120.30 123.55 A A A NE CZ NH1 ARG ARG ARG 114 114 114 N 1 -7.01 0.90 118.30 111.29 A A A CB CG OD2 ASP ASP ASP 121 121 121 N 1 9.59 1.40 123.60 133.19 A A A CD NE CZ ARG ARG ARG 132 132 132 N 1 5.61 0.50 120.30 125.91 A A A NE CZ NH1 ARG ARG ARG 132 132 132 N 1 -5.16 0.50 120.30 115.14 A A A NE CZ NH2 ARG ARG ARG 132 132 132 N 1 7.29 0.50 120.30 127.59 A A A NE CZ NH1 ARG ARG ARG 179 179 179 N 1 -10.87 0.50 120.30 109.43 A A A NE CZ NH2 ARG ARG ARG 179 179 179 N 1 -3.60 0.60 121.00 117.40 A A A CB CG CD1 TYR TYR TYR 194 194 194 N 1 A A O O HOH HOH 282 418 2.15 1_555 7_556 1 A PRO 147 -58.49 78.90 1 A SER 150 64.56 -28.03 1 A GLN 153 -142.46 41.66 1 A LYS 178 -121.27 -123.73 27.46 THE CLOSE (LESS THAN 2.5 ANGSTROMS) CONTACTS AT 146 ILE N - 148 ASN O (MAIN-MAIN) AND 149 ASN O - 151 GLN N (MAIN-MAIN) ARE LOCATED IN THE LEAST RELIABLE PART OF THE MODEL, A FLEXIBLE LOOP REGION. THE QUALITY OF THE ELECTRON DENSITY AND THE RELATIVELY HIGHER B-FACTORS IN THIS SHORT SECTION OF THE SEQUENCE RESULTED IN POORER FINAL REFINEMENT THAN FOR THE REST OF THIS STRUCTURE. 0.191 0.150 1.70 8.0 16330 91.6 1 2. 1.70 8.0 173 1316 16 0 1127 0.013 0.020 0.037 0.040 0.037 0.053 2.238 2.500 3.657 3.400 5.046 3.800 7.771 6.600 0.015 0.025 0.136 0.180 0.191 0.400 0.167 0.400 0.248 0.400 3.0 3.6 15.6 10.0 37.4 10.0 1VSD 19297 0.064 1 4.88 99.8 refinement PROLSQ data reduction DENZO data scaling SCALEPACK INTEGRASE, HYDROXYETHYL GROUP, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID ASV INTEGRASE CORE DOMAIN WITH MG(II) COFACTOR AND HEPES LIGAND, HIGH MG CONCENTRATION FORM 1 N N 2 N N 3 N N 4 N N THIS FILE CONTAINS ONLY A MONOMER. IN ORDER TO CREATE THE SECOND SUBUNIT OF THE DIMERIC MOLECULE, THE FRACTIONAL CRYSTALLOGRAPHIC COORDINATES NEED TO BE TRANSFORMED BY Y, X, 1.0 - Z. A PRO 69 A PRO 20 HELX_P A MET 71 A MET 22 5 1 3 A SER 98 A SER 49 HELX_P A LEU 112 A LEU 63 1 2 15 A SER 124 A SER 75 HELX_P A THR 127 A THR 78 1 3 4 A LYS 129 A LYS 80 HELX_P A TRP 138 A TRP 89 1 4 10 A ALA 154 A ALA 105 HELX_P A ASP 174 A ASP 125 1 5 21 A THR 182 A THR 133 HELX_P A ASN 197 A ASN 148 1 6 16 metalc 2.117 A MG 250 B MG MG 1_555 A ASP 121 A OD2 ASP 72 1_555 metalc 1.985 A MG 250 B MG MG 1_555 A HOH 262 D O HOH 1_555 metalc 2.137 A MG 250 B MG MG 1_555 A HOH 263 D O HOH 1_555 metalc 2.147 A MG 250 B MG MG 1_555 A HOH 264 D O HOH 1_555 metalc 2.133 A MG 250 B MG MG 1_555 A HOH 265 D O HOH 1_555 metalc 2.146 A MG 250 B MG MG 1_555 A ASP 64 A OD1 ASP 15 1_555 covale 1.342 A SER 124 A C SER 75 1_555 A OCY 125 A N OCY 76 1_555 covale 1.320 A OCY 125 A C OCY 76 1_555 A PHE 126 A N PHE 77 1_555 ENDORIBONUCLEASE HYDROLASE, ENDONUCLEASE, ENDORIBONUCLEASE A ALA 72 A ALA 23 1 A PRO 73 A PRO 24 3.18 POL_RSVP UNP 1 1 P03354 TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAK LVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLV VGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKVQREPGVQYLGYKLGSTYVAPVGL VAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVRLSTTAALERWDPALPL EGAVARCEQGAIGVLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLP EGILLALKGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTDASSSTHKGVVVWREGPRWEIKEIADLGASV QQLEARAVAMALLLWPTTPTNVVTDSAFVAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGN DVADSQATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLE PRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPG NSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRI ETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPLFAGISDWIPWEDEQEGLQGETASN KQERPGEDTLAANES 616 771 1VSD 50 199 P03354 A 1 1 150 1 ALA CONFLICT LEU 51 1VSD A P03354 UNP 617 2 1 LEU CONFLICT ARG 52 1VSD A P03354 UNP 618 3 1 ALA DELETION 1VSD A P03354 UNP 620 1 GLY DELETION 1VSD A P03354 UNP 621 1 VAL DELETION 1VSD A P03354 UNP 622 1 ASN DELETION 1VSD A P03354 UNP 623 1 PRO DELETION 1VSD A P03354 UNP 624 1 ARG DELETION 1VSD A P03354 UNP 625 1 VAL CONFLICT ALA 101 1VSD A P03354 UNP 673 52 1 ARG CONFLICT LYS 166 1VSD A P03354 UNP 738 117 5 anti-parallel anti-parallel parallel parallel A ILE 88 A ILE 39 A HIS 93 A HIS 44 A TRP 76 A TRP 27 A ASP 82 A ASP 33 A ILE 60 A ILE 11 A LEU 67 A LEU 18 A ALA 117 A ALA 68 A LYS 119 A LYS 70 A ALA 141 A ALA 92 A THR 143 A THR 94 BINDING SITE FOR RESIDUE MG A 250 Software 6 BINDING SITE FOR RESIDUE EPE A 261 Software 15 A ASP 64 A ASP 15 6 1_555 A ASP 121 A ASP 72 6 1_555 A HOH 262 D HOH 6 1_555 A HOH 263 D HOH 6 1_555 A HOH 264 D HOH 6 1_555 A HOH 265 D HOH 6 1_555 A PRO 73 A PRO 24 15 1_555 A SER 75 A SER 26 15 1_555 A TRP 76 A TRP 27 15 1_555 A GLY 94 A GLY 45 15 1_555 A ARG 95 A ARG 46 15 1_555 A VAL 96 A VAL 47 15 1_555 A ARG 137 A ARG 88 15 6_566 A TRP 138 A TRP 89 15 6_566 A LYS 166 A LYS 117 15 4_565 A LYS 191 A LYS 142 15 4_565 A ALA 195 A ALA 146 15 4_565 A HOH 287 D HOH 15 4_565 A HOH 290 D HOH 15 1_555 A HOH 297 D HOH 15 6_566 A HOH 382 D HOH 15 1_555 96 P 43 21 2