0.015140
0.000000
0.000000
0.000000
0.015140
0.000000
0.000000
0.000000
0.012247
0.00000
0.00000
0.00000
CIS PROLINE - PRO 73
Bujacz, G.
Jaskolski, M.
Alexandratos, J.
Wlodawer, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
66.050
66.050
81.650
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C8 H18 N2 O4 S
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C5 H11 N O3 S
165.211
n
HYDROXYETHYLCYSTEINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
4
89
96
10.1016/S0969-2126(96)00012-3
8805516
The catalytic domain of avian sarcoma virus integrase: conformation of the active-site residues in the presence of divalent cations.
1996
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
295
1
IMAGE PLATE
1995-05-30
MAR scanner 300 mm plate
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
CRYSTALS SOAKED IN 500 MILLIMOLAR MGCL2
16767.285
INTEGRASE
CATALYTIC CORE DOMAIN, RESIDUES 1 - 4, 52 - 209
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
1
syn
non-polymer
18.015
water
173
nat
water
no
yes
PLREGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGS(OCY)
FTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFNL
PLREGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSK
STREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFNL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Alpharetrovirus
Rous sarcoma virus
Schmidt-Ruppin
Escherichia
sample
ORIGINAL VIRAL DNA CLONE\: JU ET AL., J. VIROL. 33:1026-1033 (1980), ORIGINAL EXPRESSION CLONE\: TERRY ET AL., J. VIROL. 62:2358-2365 (1988), EXPRESSION CLONE FOR CORE\: KULKOSKY ET AL., J. VIROL. 206:448-456 (1995)
11889
Rous sarcoma virus (strain Schmidt-Ruppin)
562
Escherichia coli
PRC23IN(52-207)
2.66
53.78
7.5
pH 7.5
THE PROTEIN WAS CRYSTALLIZED FROM 20% PEG 4000, 10%
ISOPROPANOL, 100 MILLI-MOLAR HEPES PH 7.5. CRYSTALS WERE
THEN SOAKED IN 500 MILLI-MOLAR MGCL2.
repository
Initial release
Version format compliance
Version format compliance
1
0
1996-04-03
1
1
2008-03-03
1
2
2011-07-13
Y
1995-11-29
REL
MG
MAGNESIUM ION
EPE
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HOH
water
THE APPARENT DISCREPANCY BETWEEN THE SEQUENCE PRESENTED
HERE AND THE "POL_RSVP" SEQUENCE IS A RESULT OF VIRAL
STRAIN VARIATION. THE STRAIN USED FOR THIS WORK,
"ROUS SARCOMA VIRUS SCHMIDT-RUPPIN B", COMPARED TO
"POL-RSVP" SEQUENCE DIFFERS AT TWO POSITIONS WITH
THE CONSERVATIVE AMINO ACID RESIDUE DIFFERENCES NOTED
(VAL -> ALA 101 AND ARG -> LYS 166).
MG
250
2
MG
MG
250
A
EPE
261
3
EPE
EPE
261
A
HOH
262
4
HOH
HOH
262
A
HOH
263
4
HOH
HOH
263
A
HOH
264
4
HOH
HOH
264
A
HOH
265
4
HOH
HOH
265
A
HOH
266
4
HOH
HOH
266
A
HOH
267
4
HOH
HOH
267
A
HOH
268
4
HOH
HOH
268
A
HOH
269
4
HOH
HOH
269
A
HOH
270
4
HOH
HOH
270
A
HOH
271
4
HOH
HOH
271
A
HOH
272
4
HOH
HOH
272
A
HOH
273
4
HOH
HOH
273
A
HOH
274
4
HOH
HOH
274
A
HOH
275
4
HOH
HOH
275
A
HOH
276
4
HOH
HOH
276
A
HOH
277
4
HOH
HOH
277
A
HOH
278
4
HOH
HOH
278
A
HOH
279
4
HOH
HOH
279
A
HOH
280
4
HOH
HOH
280
A
HOH
281
4
HOH
HOH
281
A
HOH
282
4
HOH
HOH
282
A
HOH
283
4
HOH
HOH
283
A
HOH
284
4
HOH
HOH
284
A
HOH
285
4
HOH
HOH
285
A
HOH
286
4
HOH
HOH
286
A
HOH
287
4
HOH
HOH
287
A
HOH
288
4
HOH
HOH
288
A
HOH
289
4
HOH
HOH
289
A
HOH
290
4
HOH
HOH
290
A
HOH
291
4
HOH
HOH
291
A
HOH
292
4
HOH
HOH
292
A
HOH
293
4
HOH
HOH
293
A
HOH
294
4
HOH
HOH
294
A
HOH
295
4
HOH
HOH
295
A
HOH
296
4
HOH
HOH
296
A
HOH
297
4
HOH
HOH
297
A
HOH
298
4
HOH
HOH
298
A
HOH
299
4
HOH
HOH
299
A
HOH
300
4
HOH
HOH
300
A
HOH
301
4
HOH
HOH
301
A
HOH
302
4
HOH
HOH
302
A
HOH
303
4
HOH
HOH
303
A
HOH
304
4
HOH
HOH
304
A
HOH
305
4
HOH
HOH
305
A
HOH
306
4
HOH
HOH
306
A
HOH
307
4
HOH
HOH
307
A
HOH
308
4
HOH
HOH
308
A
HOH
309
4
HOH
HOH
309
A
HOH
310
4
HOH
HOH
310
A
HOH
311
4
HOH
HOH
311
A
HOH
312
4
HOH
HOH
312
A
HOH
313
4
HOH
HOH
313
A
HOH
314
4
HOH
HOH
314
A
HOH
315
4
HOH
HOH
315
A
HOH
316
4
HOH
HOH
316
A
HOH
317
4
HOH
HOH
317
A
HOH
318
4
HOH
HOH
318
A
HOH
319
4
HOH
HOH
319
A
HOH
320
4
HOH
HOH
320
A
HOH
321
4
HOH
HOH
321
A
HOH
322
4
HOH
HOH
322
A
HOH
323
4
HOH
HOH
323
A
HOH
324
4
HOH
HOH
324
A
HOH
325
4
HOH
HOH
325
A
HOH
326
4
HOH
HOH
326
A
HOH
327
4
HOH
HOH
327
A
HOH
328
4
HOH
HOH
328
A
HOH
329
4
HOH
HOH
329
A
HOH
330
4
HOH
HOH
330
A
HOH
331
4
HOH
HOH
331
A
HOH
332
4
HOH
HOH
332
A
HOH
333
4
HOH
HOH
333
A
HOH
334
4
HOH
HOH
334
A
HOH
335
4
HOH
HOH
335
A
HOH
336
4
HOH
HOH
336
A
HOH
337
4
HOH
HOH
337
A
HOH
338
4
HOH
HOH
338
A
HOH
339
4
HOH
HOH
339
A
HOH
340
4
HOH
HOH
340
A
HOH
341
4
HOH
HOH
341
A
HOH
342
4
HOH
HOH
342
A
HOH
343
4
HOH
HOH
343
A
HOH
344
4
HOH
HOH
344
A
HOH
345
4
HOH
HOH
345
A
HOH
346
4
HOH
HOH
346
A
HOH
347
4
HOH
HOH
347
A
HOH
348
4
HOH
HOH
348
A
HOH
349
4
HOH
HOH
349
A
HOH
350
4
HOH
HOH
350
A
HOH
351
4
HOH
HOH
351
A
HOH
352
4
HOH
HOH
352
A
HOH
353
4
HOH
HOH
353
A
HOH
354
4
HOH
HOH
354
A
HOH
355
4
HOH
HOH
355
A
HOH
356
4
HOH
HOH
356
A
HOH
357
4
HOH
HOH
357
A
HOH
358
4
HOH
HOH
358
A
HOH
359
4
HOH
HOH
359
A
HOH
360
4
HOH
HOH
360
A
HOH
361
4
HOH
HOH
361
A
HOH
362
4
HOH
HOH
362
A
HOH
363
4
HOH
HOH
363
A
HOH
364
4
HOH
HOH
364
A
HOH
365
4
HOH
HOH
365
A
HOH
366
4
HOH
HOH
366
A
HOH
367
4
HOH
HOH
367
A
HOH
368
4
HOH
HOH
368
A
HOH
369
4
HOH
HOH
369
A
HOH
370
4
HOH
HOH
370
A
HOH
371
4
HOH
HOH
371
A
HOH
372
4
HOH
HOH
372
A
HOH
373
4
HOH
HOH
373
A
HOH
374
4
HOH
HOH
374
A
HOH
375
4
HOH
HOH
375
A
HOH
376
4
HOH
HOH
376
A
HOH
377
4
HOH
HOH
377
A
HOH
378
4
HOH
HOH
378
A
HOH
379
4
HOH
HOH
379
A
HOH
380
4
HOH
HOH
380
A
HOH
381
4
HOH
HOH
381
A
HOH
382
4
HOH
HOH
382
A
HOH
383
4
HOH
HOH
383
A
HOH
384
4
HOH
HOH
384
A
HOH
385
4
HOH
HOH
385
A
HOH
386
4
HOH
HOH
386
A
HOH
387
4
HOH
HOH
387
A
HOH
388
4
HOH
HOH
388
A
HOH
389
4
HOH
HOH
389
A
HOH
390
4
HOH
HOH
390
A
HOH
391
4
HOH
HOH
391
A
HOH
392
4
HOH
HOH
392
A
HOH
393
4
HOH
HOH
393
A
HOH
394
4
HOH
HOH
394
A
HOH
395
4
HOH
HOH
395
A
HOH
396
4
HOH
HOH
396
A
HOH
397
4
HOH
HOH
397
A
HOH
398
4
HOH
HOH
398
A
HOH
399
4
HOH
HOH
399
A
HOH
400
4
HOH
HOH
400
A
HOH
401
4
HOH
HOH
401
A
HOH
402
4
HOH
HOH
402
A
HOH
403
4
HOH
HOH
403
A
HOH
404
4
HOH
HOH
404
A
HOH
405
4
HOH
HOH
405
A
HOH
406
4
HOH
HOH
406
A
HOH
407
4
HOH
HOH
407
A
HOH
408
4
HOH
HOH
408
A
HOH
409
4
HOH
HOH
409
A
HOH
410
4
HOH
HOH
410
A
HOH
411
4
HOH
HOH
411
A
HOH
412
4
HOH
HOH
412
A
HOH
413
4
HOH
HOH
413
A
HOH
414
4
HOH
HOH
414
A
HOH
415
4
HOH
HOH
415
A
HOH
416
4
HOH
HOH
416
A
HOH
417
4
HOH
HOH
417
A
HOH
418
4
HOH
HOH
418
A
HOH
419
4
HOH
HOH
419
A
HOH
420
4
HOH
HOH
420
A
HOH
421
4
HOH
HOH
421
A
HOH
422
4
HOH
HOH
422
A
HOH
423
4
HOH
HOH
423
A
HOH
424
4
HOH
HOH
424
A
HOH
425
4
HOH
HOH
425
A
HOH
426
4
HOH
HOH
426
A
HOH
427
4
HOH
HOH
427
A
HOH
428
4
HOH
HOH
428
A
HOH
429
4
HOH
HOH
429
A
HOH
430
4
HOH
HOH
430
A
HOH
431
4
HOH
HOH
431
A
HOH
432
4
HOH
HOH
432
A
HOH
433
4
HOH
HOH
433
A
HOH
434
4
HOH
HOH
434
A
n
1
50
A
n
2
51
A
n
3
52
A
n
4
53
A
GLY
54
n
5
GLY
54
A
LEU
55
n
6
LEU
55
A
GLY
56
n
7
GLY
56
A
PRO
57
n
8
PRO
57
A
LEU
58
n
9
LEU
58
A
GLN
59
n
10
GLN
59
A
ILE
60
n
11
ILE
60
A
TRP
61
n
12
TRP
61
A
GLN
62
n
13
GLN
62
A
THR
63
n
14
THR
63
A
ASP
64
n
15
ASP
64
A
PHE
65
n
16
PHE
65
A
THR
66
n
17
THR
66
A
LEU
67
n
18
LEU
67
A
GLU
68
n
19
GLU
68
A
PRO
69
n
20
PRO
69
A
ARG
70
n
21
ARG
70
A
MET
71
n
22
MET
71
A
ALA
72
n
23
ALA
72
A
PRO
73
n
24
PRO
73
A
ARG
74
n
25
ARG
74
A
SER
75
n
26
SER
75
A
TRP
76
n
27
TRP
76
A
LEU
77
n
28
LEU
77
A
ALA
78
n
29
ALA
78
A
VAL
79
n
30
VAL
79
A
THR
80
n
31
THR
80
A
VAL
81
n
32
VAL
81
A
ASP
82
n
33
ASP
82
A
THR
83
n
34
THR
83
A
ALA
84
n
35
ALA
84
A
SER
85
n
36
SER
85
A
SER
86
n
37
SER
86
A
ALA
87
n
38
ALA
87
A
ILE
88
n
39
ILE
88
A
VAL
89
n
40
VAL
89
A
VAL
90
n
41
VAL
90
A
THR
91
n
42
THR
91
A
GLN
92
n
43
GLN
92
A
HIS
93
n
44
HIS
93
A
GLY
94
n
45
GLY
94
A
ARG
95
n
46
ARG
95
A
VAL
96
n
47
VAL
96
A
THR
97
n
48
THR
97
A
SER
98
n
49
SER
98
A
VAL
99
n
50
VAL
99
A
ALA
100
n
51
ALA
100
A
ALA
101
n
52
ALA
101
A
GLN
102
n
53
GLN
102
A
HIS
103
n
54
HIS
103
A
HIS
104
n
55
HIS
104
A
TRP
105
n
56
TRP
105
A
ALA
106
n
57
ALA
106
A
THR
107
n
58
THR
107
A
ALA
108
n
59
ALA
108
A
ILE
109
n
60
ILE
109
A
ALA
110
n
61
ALA
110
A
VAL
111
n
62
VAL
111
A
LEU
112
n
63
LEU
112
A
GLY
113
n
64
GLY
113
A
ARG
114
n
65
ARG
114
A
PRO
115
n
66
PRO
115
A
LYS
116
n
67
LYS
116
A
ALA
117
n
68
ALA
117
A
ILE
118
n
69
ILE
118
A
LYS
119
n
70
LYS
119
A
THR
120
n
71
THR
120
A
ASP
121
n
72
ASP
121
A
ASN
122
n
73
ASN
122
A
GLY
123
n
74
GLY
123
A
SER
124
n
75
SER
124
A
OCY
125
n
76
OCY
125
A
PHE
126
n
77
PHE
126
A
THR
127
n
78
THR
127
A
SER
128
n
79
SER
128
A
LYS
129
n
80
LYS
129
A
SER
130
n
81
SER
130
A
THR
131
n
82
THR
131
A
ARG
132
n
83
ARG
132
A
GLU
133
n
84
GLU
133
A
TRP
134
n
85
TRP
134
A
LEU
135
n
86
LEU
135
A
ALA
136
n
87
ALA
136
A
ARG
137
n
88
ARG
137
A
TRP
138
n
89
TRP
138
A
GLY
139
n
90
GLY
139
A
ILE
140
n
91
ILE
140
A
ALA
141
n
92
ALA
141
A
HIS
142
n
93
HIS
142
A
THR
143
n
94
THR
143
A
THR
144
n
95
THR
144
A
GLY
145
n
96
GLY
145
A
ILE
146
n
97
ILE
146
A
PRO
147
n
98
PRO
147
A
GLY
148
n
99
GLY
148
A
ASN
149
n
100
ASN
149
A
SER
150
n
101
SER
150
A
GLN
151
n
102
GLN
151
A
GLY
152
n
103
GLY
152
A
GLN
153
n
104
GLN
153
A
ALA
154
n
105
ALA
154
A
MET
155
n
106
MET
155
A
VAL
156
n
107
VAL
156
A
GLU
157
n
108
GLU
157
A
ARG
158
n
109
ARG
158
A
ALA
159
n
110
ALA
159
A
ASN
160
n
111
ASN
160
A
ARG
161
n
112
ARG
161
A
LEU
162
n
113
LEU
162
A
LEU
163
n
114
LEU
163
A
LYS
164
n
115
LYS
164
A
ASP
165
n
116
ASP
165
A
LYS
166
n
117
LYS
166
A
ILE
167
n
118
ILE
167
A
ARG
168
n
119
ARG
168
A
VAL
169
n
120
VAL
169
A
LEU
170
n
121
LEU
170
A
ALA
171
n
122
ALA
171
A
GLU
172
n
123
GLU
172
A
GLY
173
n
124
GLY
173
A
ASP
174
n
125
ASP
174
A
GLY
175
n
126
GLY
175
A
PHE
176
n
127
PHE
176
A
MET
177
n
128
MET
177
A
LYS
178
n
129
LYS
178
A
ARG
179
n
130
ARG
179
A
ILE
180
n
131
ILE
180
A
PRO
181
n
132
PRO
181
A
THR
182
n
133
THR
182
A
SER
183
n
134
SER
183
A
LYS
184
n
135
LYS
184
A
GLN
185
n
136
GLN
185
A
GLY
186
n
137
GLY
186
A
GLU
187
n
138
GLU
187
A
LEU
188
n
139
LEU
188
A
LEU
189
n
140
LEU
189
A
ALA
190
n
141
ALA
190
A
LYS
191
n
142
LYS
191
A
ALA
192
n
143
ALA
192
A
MET
193
n
144
MET
193
A
TYR
194
n
145
TYR
194
A
ALA
195
n
146
ALA
195
A
LEU
196
n
147
LEU
196
A
ASN
197
n
148
ASN
197
A
HIS
198
n
149
HIS
198
A
PHE
199
n
150
PHE
199
A
n
151
200
A
n
152
201
A
author_defined_assembly
2
dimeric
1930
-21.0
15120
A
ASP
121
A
OD2
ASP
72
1_555
A
MG
250
B
MG
MG
1_555
A
HOH
262
D
O
HOH
1_555
86.4
A
ASP
121
A
OD2
ASP
72
1_555
A
MG
250
B
MG
MG
1_555
A
HOH
263
D
O
HOH
1_555
175.3
A
HOH
262
D
O
HOH
1_555
A
MG
250
B
MG
MG
1_555
A
HOH
263
D
O
HOH
1_555
89.3
A
ASP
121
A
OD2
ASP
72
1_555
A
MG
250
B
MG
MG
1_555
A
HOH
264
D
O
HOH
1_555
87.4
A
HOH
262
D
O
HOH
1_555
A
MG
250
B
MG
MG
1_555
A
HOH
264
D
O
HOH
1_555
94.5
A
HOH
263
D
O
HOH
1_555
A
MG
250
B
MG
MG
1_555
A
HOH
264
D
O
HOH
1_555
91.2
A
ASP
121
A
OD2
ASP
72
1_555
A
MG
250
B
MG
MG
1_555
A
HOH
265
D
O
HOH
1_555
89.6
A
HOH
262
D
O
HOH
1_555
A
MG
250
B
MG
MG
1_555
A
HOH
265
D
O
HOH
1_555
175.7
A
HOH
263
D
O
HOH
1_555
A
MG
250
B
MG
MG
1_555
A
HOH
265
D
O
HOH
1_555
94.8
A
HOH
264
D
O
HOH
1_555
A
MG
250
B
MG
MG
1_555
A
HOH
265
D
O
HOH
1_555
86.7
A
ASP
121
A
OD2
ASP
72
1_555
A
MG
250
B
MG
MG
1_555
A
ASP
64
A
OD1
ASP
15
1_555
93.3
A
HOH
262
D
O
HOH
1_555
A
MG
250
B
MG
MG
1_555
A
ASP
64
A
OD1
ASP
15
1_555
93.0
A
HOH
263
D
O
HOH
1_555
A
MG
250
B
MG
MG
1_555
A
ASP
64
A
OD1
ASP
15
1_555
88.7
A
HOH
264
D
O
HOH
1_555
A
MG
250
B
MG
MG
1_555
A
ASP
64
A
OD1
ASP
15
1_555
172.5
A
HOH
265
D
O
HOH
1_555
A
MG
250
B
MG
MG
1_555
A
ASP
64
A
OD1
ASP
15
1_555
85.9
A
OCY
125
HYDROXYETHYLCYSTEINE
A
OCY
76
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
81.6500000000
A
O
VAL
89
A
O
VAL
40
A
N
THR
80
A
N
THR
31
A
O
LEU
77
A
O
LEU
28
A
N
THR
66
A
N
THR
17
A
O
TRP
61
A
O
TRP
12
A
N
ALA
117
A
N
ALA
68
A
O
ILE
118
A
O
ILE
69
A
N
ALA
141
A
N
ALA
92
1
A
PRO
50
A
PRO
1
1
Y
1
A
LEU
51
A
LEU
2
1
Y
1
A
ARG
52
A
ARG
3
1
Y
1
A
GLU
53
A
GLU
4
1
Y
1
A
ASN
200
A
ASN
151
1
Y
1
A
LEU
201
A
LEU
152
1
Y
1
A
A
O
O
HOH
HOH
295
335
2.09
1
A
A
O
O
HOH
HOH
405
425
2.14
1
A
A
O
O
HOH
HOH
282
347
2.16
1
A
A
O
O
HOH
HOH
316
371
2.16
1
-8.10
0.50
120.30
112.20
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
70
70
70
N
1
-10.60
1.40
123.60
113.00
A
A
A
CD
NE
CZ
ARG
ARG
ARG
74
74
74
N
1
-3.12
0.50
120.30
117.18
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
74
74
74
N
1
-12.26
2.00
110.40
98.14
A
A
A
CB
CA
C
GLN
GLN
GLN
92
92
92
N
1
-3.98
0.50
120.30
116.32
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
95
95
95
N
1
3.25
0.50
120.30
123.55
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
114
114
114
N
1
-7.01
0.90
118.30
111.29
A
A
A
CB
CG
OD2
ASP
ASP
ASP
121
121
121
N
1
9.59
1.40
123.60
133.19
A
A
A
CD
NE
CZ
ARG
ARG
ARG
132
132
132
N
1
5.61
0.50
120.30
125.91
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
132
132
132
N
1
-5.16
0.50
120.30
115.14
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
132
132
132
N
1
7.29
0.50
120.30
127.59
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
179
179
179
N
1
-10.87
0.50
120.30
109.43
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
179
179
179
N
1
-3.60
0.60
121.00
117.40
A
A
A
CB
CG
CD1
TYR
TYR
TYR
194
194
194
N
1
A
A
O
O
HOH
HOH
282
418
2.15
1_555
7_556
1
A
PRO
147
-58.49
78.90
1
A
SER
150
64.56
-28.03
1
A
GLN
153
-142.46
41.66
1
A
LYS
178
-121.27
-123.73
27.46
THE CLOSE (LESS THAN 2.5 ANGSTROMS) CONTACTS AT
146 ILE N - 148 ASN O (MAIN-MAIN) AND 149 ASN O - 151
GLN N (MAIN-MAIN) ARE LOCATED IN THE LEAST RELIABLE PART OF
THE MODEL, A FLEXIBLE LOOP REGION. THE QUALITY OF THE
ELECTRON DENSITY AND THE RELATIVELY HIGHER B-FACTORS IN
THIS SHORT SECTION OF THE SEQUENCE RESULTED IN POORER
FINAL REFINEMENT THAN FOR THE REST OF THIS STRUCTURE.
0.191
0.150
1.70
8.0
16330
91.6
1
2.
1.70
8.0
173
1316
16
0
1127
0.013
0.020
0.037
0.040
0.037
0.053
2.238
2.500
3.657
3.400
5.046
3.800
7.771
6.600
0.015
0.025
0.136
0.180
0.191
0.400
0.167
0.400
0.248
0.400
3.0
3.6
15.6
10.0
37.4
10.0
1VSD
19297
0.064
1
4.88
99.8
refinement
PROLSQ
data reduction
DENZO
data scaling
SCALEPACK
INTEGRASE, HYDROXYETHYL GROUP, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
ASV INTEGRASE CORE DOMAIN WITH MG(II) COFACTOR AND HEPES LIGAND, HIGH MG CONCENTRATION FORM
1
N
N
2
N
N
3
N
N
4
N
N
THIS FILE CONTAINS ONLY A MONOMER. IN ORDER TO CREATE THE
SECOND SUBUNIT OF THE DIMERIC MOLECULE, THE FRACTIONAL
CRYSTALLOGRAPHIC COORDINATES NEED TO BE TRANSFORMED BY
Y, X, 1.0 - Z.
A
PRO
69
A
PRO
20
HELX_P
A
MET
71
A
MET
22
5
1
3
A
SER
98
A
SER
49
HELX_P
A
LEU
112
A
LEU
63
1
2
15
A
SER
124
A
SER
75
HELX_P
A
THR
127
A
THR
78
1
3
4
A
LYS
129
A
LYS
80
HELX_P
A
TRP
138
A
TRP
89
1
4
10
A
ALA
154
A
ALA
105
HELX_P
A
ASP
174
A
ASP
125
1
5
21
A
THR
182
A
THR
133
HELX_P
A
ASN
197
A
ASN
148
1
6
16
metalc
2.117
A
MG
250
B
MG
MG
1_555
A
ASP
121
A
OD2
ASP
72
1_555
metalc
1.985
A
MG
250
B
MG
MG
1_555
A
HOH
262
D
O
HOH
1_555
metalc
2.137
A
MG
250
B
MG
MG
1_555
A
HOH
263
D
O
HOH
1_555
metalc
2.147
A
MG
250
B
MG
MG
1_555
A
HOH
264
D
O
HOH
1_555
metalc
2.133
A
MG
250
B
MG
MG
1_555
A
HOH
265
D
O
HOH
1_555
metalc
2.146
A
MG
250
B
MG
MG
1_555
A
ASP
64
A
OD1
ASP
15
1_555
covale
1.342
A
SER
124
A
C
SER
75
1_555
A
OCY
125
A
N
OCY
76
1_555
covale
1.320
A
OCY
125
A
C
OCY
76
1_555
A
PHE
126
A
N
PHE
77
1_555
ENDORIBONUCLEASE
HYDROLASE, ENDONUCLEASE, ENDORIBONUCLEASE
A
ALA
72
A
ALA
23
1
A
PRO
73
A
PRO
24
3.18
POL_RSVP
UNP
1
1
P03354
TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAK
LVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLV
VGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKVQREPGVQYLGYKLGSTYVAPVGL
VAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVRLSTTAALERWDPALPL
EGAVARCEQGAIGVLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLP
EGILLALKGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTDASSSTHKGVVVWREGPRWEIKEIADLGASV
QQLEARAVAMALLLWPTTPTNVVTDSAFVAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGN
DVADSQATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLE
PRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPG
NSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRI
ETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPLFAGISDWIPWEDEQEGLQGETASN
KQERPGEDTLAANES
616
771
1VSD
50
199
P03354
A
1
1
150
1
ALA
CONFLICT
LEU
51
1VSD
A
P03354
UNP
617
2
1
LEU
CONFLICT
ARG
52
1VSD
A
P03354
UNP
618
3
1
ALA
DELETION
1VSD
A
P03354
UNP
620
1
GLY
DELETION
1VSD
A
P03354
UNP
621
1
VAL
DELETION
1VSD
A
P03354
UNP
622
1
ASN
DELETION
1VSD
A
P03354
UNP
623
1
PRO
DELETION
1VSD
A
P03354
UNP
624
1
ARG
DELETION
1VSD
A
P03354
UNP
625
1
VAL
CONFLICT
ALA
101
1VSD
A
P03354
UNP
673
52
1
ARG
CONFLICT
LYS
166
1VSD
A
P03354
UNP
738
117
5
anti-parallel
anti-parallel
parallel
parallel
A
ILE
88
A
ILE
39
A
HIS
93
A
HIS
44
A
TRP
76
A
TRP
27
A
ASP
82
A
ASP
33
A
ILE
60
A
ILE
11
A
LEU
67
A
LEU
18
A
ALA
117
A
ALA
68
A
LYS
119
A
LYS
70
A
ALA
141
A
ALA
92
A
THR
143
A
THR
94
BINDING SITE FOR RESIDUE MG A 250
Software
6
BINDING SITE FOR RESIDUE EPE A 261
Software
15
A
ASP
64
A
ASP
15
6
1_555
A
ASP
121
A
ASP
72
6
1_555
A
HOH
262
D
HOH
6
1_555
A
HOH
263
D
HOH
6
1_555
A
HOH
264
D
HOH
6
1_555
A
HOH
265
D
HOH
6
1_555
A
PRO
73
A
PRO
24
15
1_555
A
SER
75
A
SER
26
15
1_555
A
TRP
76
A
TRP
27
15
1_555
A
GLY
94
A
GLY
45
15
1_555
A
ARG
95
A
ARG
46
15
1_555
A
VAL
96
A
VAL
47
15
1_555
A
ARG
137
A
ARG
88
15
6_566
A
TRP
138
A
TRP
89
15
6_566
A
LYS
166
A
LYS
117
15
4_565
A
LYS
191
A
LYS
142
15
4_565
A
ALA
195
A
ALA
146
15
4_565
A
HOH
287
D
HOH
15
4_565
A
HOH
290
D
HOH
15
1_555
A
HOH
297
D
HOH
15
6_566
A
HOH
382
D
HOH
15
1_555
96
P 43 21 2