data_1VTC # _entry.id 1VTC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VTC pdb_00001vtc 10.2210/pdb1vtc/pdb NDB ADH098 ? ? RCSB RCSB003036 ? ? WWPDB D_1000003036 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-13 2 'Structure model' 1 1 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VTC _pdbx_database_status.recvd_initial_deposition_date 1988-08-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, A.H.-J.' 1 'Fujii, S.' 2 'Van Boom, J.H.' 3 'Rich, A.' 4 # _citation.id primary _citation.title 'Molecular Structure of the Octamer d(G-G-C-C-G-G-C-C) Modified A-DNA' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 79 _citation.page_first 3968 _citation.page_last 3972 _citation.year 1982 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, A.H.-J.' 1 ? primary 'Fujii, S.' 2 ? primary 'Van Boom, J.H.' 3 ? primary 'Rich, A.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*GP*GP*CP*CP*GP*GP*CP*C)-3') ; _entity.formula_weight 2428.593 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DC)(DC)(DG)(DG)(DC)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GGCCGGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DC n 1 4 DC n 1 5 DG n 1 6 DG n 1 7 DC n 1 8 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DC 8 8 8 DC C A . n # _cell.entry_id 1VTC _cell.length_a 40.510 _cell.length_b 40.510 _cell.length_c 24.670 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1VTC _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VTC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.97 _exptl_crystal.density_Matthews 2.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER 1 2 3 1 2 1 'NA CACODYLATE' 4 5 6 1 3 1 SPERMINE 7 8 9 1 4 1 MGCL2 10 11 12 1 5 2 WATER 13 14 15 # _diffrn.id 1 _diffrn.ambient_temp 255.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'NICOLET P3' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1VTC _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs 1221 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.entry_id 1VTC _refine.ls_number_reflns_obs 874 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 3.000 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.250 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1580000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 161 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 161 _refine_hist.d_res_high 2.250 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 1VTC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VTC _struct.title 'MOLECULAR STRUCTURE OF THE OCTAMER D(G-G-C-C-G-G-C-C) MODIFIED A-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VTC _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1VTC _struct_ref.pdbx_db_accession 1VTC _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VTC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1VTC _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 770 ? 1 MORE -7 ? 1 'SSA (A^2)' 2940 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 2 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 2 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 2 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 3 N3 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 3 O2 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 3 N4 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 7 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 7 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 7 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? 1.467 1.516 -0.049 0.008 N 2 1 C4 A DG 1 ? ? C5 A DG 1 ? ? 1.336 1.379 -0.043 0.007 N 3 1 C5 A DG 1 ? ? N7 A DG 1 ? ? 1.347 1.388 -0.041 0.006 N 4 1 N7 A DG 1 ? ? C8 A DG 1 ? ? 1.263 1.305 -0.042 0.006 N 5 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.435 1.509 -0.074 0.011 N 6 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.453 1.521 -0.068 0.010 N 7 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 1.458 1.516 -0.058 0.008 N 8 1 C4 A DG 2 ? ? C5 A DG 2 ? ? 1.334 1.379 -0.045 0.007 N 9 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.346 1.388 -0.042 0.006 N 10 1 P A DC 3 ? ? "O5'" A DC 3 ? ? 1.519 1.593 -0.074 0.010 N 11 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? 1.459 1.516 -0.057 0.008 N 12 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.327 1.418 -0.091 0.012 N 13 1 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.277 1.335 -0.058 0.009 N 14 1 N1 A DC 3 ? ? C6 A DC 3 ? ? 1.313 1.367 -0.054 0.006 N 15 1 N3 A DC 3 ? ? C4 A DC 3 ? ? 1.284 1.335 -0.051 0.007 N 16 1 "O3'" A DC 3 ? ? P A DC 4 ? ? 1.528 1.607 -0.079 0.012 Y 17 1 "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 1.457 1.521 -0.064 0.010 N 18 1 C2 A DC 4 ? ? O2 A DC 4 ? ? 1.181 1.240 -0.059 0.009 N 19 1 C4 A DC 4 ? ? N4 A DC 4 ? ? 1.279 1.335 -0.056 0.009 N 20 1 N1 A DC 4 ? ? C6 A DC 4 ? ? 1.318 1.367 -0.049 0.006 N 21 1 N3 A DC 4 ? ? C4 A DC 4 ? ? 1.286 1.335 -0.049 0.007 N 22 1 "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 1.456 1.521 -0.065 0.010 N 23 1 C4 A DG 5 ? ? C5 A DG 5 ? ? 1.325 1.379 -0.054 0.007 N 24 1 C6 A DG 5 ? ? O6 A DG 5 ? ? 1.180 1.237 -0.057 0.009 N 25 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.460 1.521 -0.061 0.010 N 26 1 "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.445 1.518 -0.073 0.010 N 27 1 "O3'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.367 1.419 -0.052 0.006 N 28 1 C4 A DG 6 ? ? C5 A DG 6 ? ? 1.325 1.379 -0.054 0.007 N 29 1 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.257 1.305 -0.048 0.006 N 30 1 N9 A DG 6 ? ? C4 A DG 6 ? ? 1.322 1.375 -0.053 0.008 N 31 1 "O3'" A DG 6 ? ? P A DC 7 ? ? 1.534 1.607 -0.073 0.012 Y 32 1 "C5'" A DC 7 ? ? "C4'" A DC 7 ? ? 1.438 1.509 -0.071 0.011 N 33 1 "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 1.449 1.518 -0.069 0.010 N 34 1 "O3'" A DC 7 ? ? "C3'" A DC 7 ? ? 1.352 1.419 -0.067 0.006 N 35 1 C4 A DC 7 ? ? N4 A DC 7 ? ? 1.280 1.335 -0.055 0.009 N 36 1 N1 A DC 7 ? ? C6 A DC 7 ? ? 1.320 1.367 -0.047 0.006 N 37 1 "O3'" A DC 7 ? ? P A DC 8 ? ? 1.534 1.607 -0.073 0.012 Y 38 1 N1 A DC 8 ? ? C6 A DC 8 ? ? 1.313 1.367 -0.054 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.24 108.30 3.94 0.30 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.69 108.30 5.39 0.30 N 3 1 N9 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 107.82 105.40 2.42 0.40 N 4 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 110.68 119.70 -9.02 1.20 Y 5 1 "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 102.90 109.40 -6.50 0.80 N 6 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 117.42 108.30 9.12 0.30 N 7 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 101.89 108.00 -6.11 0.70 N 8 1 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DG 5 ? ? 108.57 119.70 -11.13 1.20 Y 9 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 115.35 108.30 7.05 0.30 N 10 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 100.70 108.00 -7.30 0.70 N 11 1 "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? 97.72 102.20 -4.48 0.70 N 12 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 103.34 108.00 -4.66 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 # _ndb_struct_conf_na.entry_id 1VTC _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_555 -0.128 -0.493 -0.518 3.940 -0.391 -2.412 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A DG 2 1_555 A DC 7 7_555 -0.193 -0.443 -0.322 0.824 -4.185 1.230 2 A_DG2:DC7_A A 2 ? A 7 ? 19 1 1 A DC 3 1_555 A DG 6 7_555 0.140 -0.398 -0.463 15.567 -9.422 -0.868 3 A_DC3:DG6_A A 3 ? A 6 ? 19 1 1 A DC 4 1_555 A DG 5 7_555 0.157 -0.445 0.015 -13.224 -0.435 -3.588 4 A_DC4:DG5_A A 4 ? A 5 ? 19 1 1 A DG 5 1_555 A DC 4 7_555 -0.157 -0.445 0.015 13.224 -0.435 -3.588 5 A_DG5:DC4_A A 5 ? A 4 ? 19 1 1 A DG 6 1_555 A DC 3 7_555 -0.140 -0.398 -0.463 -15.567 -9.423 -0.868 6 A_DG6:DC3_A A 6 ? A 3 ? 19 1 1 A DC 7 1_555 A DG 2 7_555 0.193 -0.443 -0.322 -0.824 -4.185 1.230 7 A_DC7:DG2_A A 7 ? A 2 ? 19 1 1 A DC 8 1_555 A DG 1 7_555 0.128 -0.493 -0.518 -3.940 -0.391 -2.412 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_555 A DG 2 1_555 A DC 7 7_555 -0.377 -0.821 3.424 -3.769 12.787 35.282 -2.956 0.089 2.983 20.227 5.962 37.641 1 AA_DG1DG2:DC7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DG 2 1_555 A DC 7 7_555 A DC 3 1_555 A DG 6 7_555 0.027 -1.181 2.893 -2.906 2.699 28.868 -2.860 -0.605 2.758 5.382 5.794 29.134 2 AA_DG2DC3:DG6DC7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DC 3 1_555 A DG 6 7_555 A DC 4 1_555 A DG 5 7_555 -0.032 -1.129 4.038 0.375 3.171 43.712 -1.882 0.087 3.950 4.253 -0.503 43.823 3 AA_DC3DC4:DG5DG6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DC 4 1_555 A DG 5 7_555 A DG 5 1_555 A DC 4 7_555 0.000 -2.016 2.551 0.000 14.794 13.240 -9.422 0.000 0.210 48.395 0.000 19.829 4 AA_DC4DG5:DC4DG5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DG 5 1_555 A DC 4 7_555 A DG 6 1_555 A DC 3 7_555 0.032 -1.129 4.038 -0.375 3.171 43.712 -1.882 -0.087 3.950 4.253 0.503 43.823 5 AA_DG5DG6:DC3DC4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DG 6 1_555 A DC 3 7_555 A DC 7 1_555 A DG 2 7_555 -0.027 -1.181 2.893 2.906 2.699 28.868 -2.860 0.605 2.758 5.382 -5.794 29.134 6 AA_DG6DC7:DG2DC3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DC 7 1_555 A DG 2 7_555 A DC 8 1_555 A DG 1 7_555 0.377 -0.821 3.424 3.769 12.787 35.282 -2.956 -0.089 2.983 20.227 -5.962 37.641 7 AA_DC7DC8:DG1DG2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _atom_sites.entry_id 1VTC _atom_sites.fract_transf_matrix[1][1] 0.024685 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024685 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.040535 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 7.472 -1.432 -6.048 1.00 10.00 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 6.808 -2.253 -5.114 1.00 10.00 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 7.707 -2.867 -4.120 1.00 10.00 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 9.005 -2.998 -4.655 1.00 10.00 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 7.879 -2.128 -2.855 1.00 10.00 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 7.566 -2.892 -1.734 1.00 10.00 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 9.285 -1.724 -2.740 1.00 10.00 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 9.933 -2.321 -3.917 1.00 10.00 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 10.557 -1.236 -4.673 1.00 10.00 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 10.074 -0.356 -5.562 1.00 10.00 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 10.934 0.459 -5.999 1.00 10.00 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 12.060 0.093 -5.357 1.00 10.00 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 13.329 0.608 -5.433 1.00 10.00 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 13.727 1.522 -6.084 1.00 10.00 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 14.192 -0.071 -4.622 1.00 10.00 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 13.887 -1.110 -3.836 1.00 10.00 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 14.849 -1.616 -3.135 1.00 10.00 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 12.702 -1.587 -3.765 1.00 10.00 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 11.847 -0.944 -4.542 1.00 10.00 ? 1 DG A C4 1 ATOM 20 P P . DG A 1 2 ? 7.213 -2.110 -0.434 1.00 10.00 ? 2 DG A P 1 ATOM 21 O OP1 . DG A 1 2 ? 6.717 -3.032 0.562 1.00 10.00 ? 2 DG A OP1 1 ATOM 22 O OP2 . DG A 1 2 ? 6.346 -1.074 -0.836 1.00 10.00 ? 2 DG A OP2 1 ATOM 23 O "O5'" . DG A 1 2 ? 8.598 -1.580 0.057 1.00 10.00 ? 2 DG A "O5'" 1 ATOM 24 C "C5'" . DG A 1 2 ? 9.371 -2.555 0.700 1.00 10.00 ? 2 DG A "C5'" 1 ATOM 25 C "C4'" . DG A 1 2 ? 10.437 -2.216 1.599 1.00 10.00 ? 2 DG A "C4'" 1 ATOM 26 O "O4'" . DG A 1 2 ? 11.579 -2.068 0.815 1.00 10.00 ? 2 DG A "O4'" 1 ATOM 27 C "C3'" . DG A 1 2 ? 10.345 -0.997 2.385 1.00 10.00 ? 2 DG A "C3'" 1 ATOM 28 O "O3'" . DG A 1 2 ? 10.386 -1.198 3.789 1.00 10.00 ? 2 DG A "O3'" 1 ATOM 29 C "C2'" . DG A 1 2 ? 11.524 -0.186 2.105 1.00 10.00 ? 2 DG A "C2'" 1 ATOM 30 C "C1'" . DG A 1 2 ? 12.191 -0.870 0.973 1.00 10.00 ? 2 DG A "C1'" 1 ATOM 31 N N9 . DG A 1 2 ? 12.042 0.022 -0.176 1.00 10.00 ? 2 DG A N9 1 ATOM 32 C C8 . DG A 1 2 ? 11.014 0.220 -1.005 1.00 10.00 ? 2 DG A C8 1 ATOM 33 N N7 . DG A 1 2 ? 11.226 1.094 -1.916 1.00 10.00 ? 2 DG A N7 1 ATOM 34 C C5 . DG A 1 2 ? 12.480 1.512 -1.664 1.00 10.00 ? 2 DG A C5 1 ATOM 35 C C6 . DG A 1 2 ? 13.248 2.451 -2.313 1.00 10.00 ? 2 DG A C6 1 ATOM 36 O O6 . DG A 1 2 ? 12.965 3.127 -3.262 1.00 10.00 ? 2 DG A O6 1 ATOM 37 N N1 . DG A 1 2 ? 14.467 2.562 -1.732 1.00 10.00 ? 2 DG A N1 1 ATOM 38 C C2 . DG A 1 2 ? 14.886 1.870 -0.665 1.00 10.00 ? 2 DG A C2 1 ATOM 39 N N2 . DG A 1 2 ? 16.067 2.057 -0.183 1.00 10.00 ? 2 DG A N2 1 ATOM 40 N N3 . DG A 1 2 ? 14.162 0.996 -0.063 1.00 10.00 ? 2 DG A N3 1 ATOM 41 C C4 . DG A 1 2 ? 12.970 0.871 -0.602 1.00 10.00 ? 2 DG A C4 1 ATOM 42 P P . DC A 1 3 ? 9.854 0.050 4.536 1.00 10.00 ? 3 DC A P 1 ATOM 43 O OP1 . DC A 1 3 ? 9.135 -0.312 5.725 1.00 10.00 ? 3 DC A OP1 1 ATOM 44 O OP2 . DC A 1 3 ? 9.092 0.751 3.538 1.00 10.00 ? 3 DC A OP2 1 ATOM 45 O "O5'" . DC A 1 3 ? 11.138 0.752 4.945 1.00 10.00 ? 3 DC A "O5'" 1 ATOM 46 C "C5'" . DC A 1 3 ? 12.359 0.100 5.004 1.00 10.00 ? 3 DC A "C5'" 1 ATOM 47 C "C4'" . DC A 1 3 ? 13.325 1.206 4.939 1.00 10.00 ? 3 DC A "C4'" 1 ATOM 48 O "O4'" . DC A 1 3 ? 13.623 1.494 3.597 1.00 10.00 ? 3 DC A "O4'" 1 ATOM 49 C "C3'" . DC A 1 3 ? 12.823 2.456 5.542 1.00 10.00 ? 3 DC A "C3'" 1 ATOM 50 O "O3'" . DC A 1 3 ? 13.579 2.785 6.663 1.00 10.00 ? 3 DC A "O3'" 1 ATOM 51 C "C2'" . DC A 1 3 ? 12.926 3.459 4.487 1.00 10.00 ? 3 DC A "C2'" 1 ATOM 52 C "C1'" . DC A 1 3 ? 13.691 2.795 3.344 1.00 10.00 ? 3 DC A "C1'" 1 ATOM 53 N N1 . DC A 1 3 ? 13.051 3.278 2.119 1.00 10.00 ? 3 DC A N1 1 ATOM 54 C C2 . DC A 1 3 ? 13.752 4.116 1.323 1.00 10.00 ? 3 DC A C2 1 ATOM 55 O O2 . DC A 1 3 ? 14.862 4.387 1.643 1.00 10.00 ? 3 DC A O2 1 ATOM 56 N N3 . DC A 1 3 ? 13.181 4.605 0.240 1.00 10.00 ? 3 DC A N3 1 ATOM 57 C C4 . DC A 1 3 ? 11.969 4.313 -0.069 1.00 10.00 ? 3 DC A C4 1 ATOM 58 N N4 . DC A 1 3 ? 11.478 4.823 -1.132 1.00 10.00 ? 3 DC A N4 1 ATOM 59 C C5 . DC A 1 3 ? 11.227 3.460 0.734 1.00 10.00 ? 3 DC A C5 1 ATOM 60 C C6 . DC A 1 3 ? 11.806 2.976 1.830 1.00 10.00 ? 3 DC A C6 1 ATOM 61 P P . DC A 1 4 ? 13.489 4.085 7.460 1.00 10.00 ? 4 DC A P 1 ATOM 62 O OP1 . DC A 1 4 ? 14.396 3.975 8.597 1.00 10.00 ? 4 DC A OP1 1 ATOM 63 O OP2 . DC A 1 4 ? 12.163 4.481 7.763 1.00 10.00 ? 4 DC A OP2 1 ATOM 64 O "O5'" . DC A 1 4 ? 14.151 5.100 6.455 1.00 10.00 ? 4 DC A "O5'" 1 ATOM 65 C "C5'" . DC A 1 4 ? 15.118 5.893 7.061 1.00 10.00 ? 4 DC A "C5'" 1 ATOM 66 C "C4'" . DC A 1 4 ? 15.677 6.996 6.310 1.00 10.00 ? 4 DC A "C4'" 1 ATOM 67 O "O4'" . DC A 1 4 ? 15.529 6.789 4.918 1.00 10.00 ? 4 DC A "O4'" 1 ATOM 68 C "C3'" . DC A 1 4 ? 15.092 8.316 6.504 1.00 10.00 ? 4 DC A "C3'" 1 ATOM 69 O "O3'" . DC A 1 4 ? 15.536 8.931 7.678 1.00 10.00 ? 4 DC A "O3'" 1 ATOM 70 C "C2'" . DC A 1 4 ? 15.512 9.035 5.279 1.00 10.00 ? 4 DC A "C2'" 1 ATOM 71 C "C1'" . DC A 1 4 ? 15.489 8.006 4.230 1.00 10.00 ? 4 DC A "C1'" 1 ATOM 72 N N1 . DC A 1 4 ? 14.280 7.877 3.472 1.00 10.00 ? 4 DC A N1 1 ATOM 73 C C2 . DC A 1 4 ? 13.999 8.719 2.459 1.00 10.00 ? 4 DC A C2 1 ATOM 74 O O2 . DC A 1 4 ? 14.797 9.555 2.214 1.00 10.00 ? 4 DC A O2 1 ATOM 75 N N3 . DC A 1 4 ? 12.867 8.563 1.815 1.00 10.00 ? 4 DC A N3 1 ATOM 76 C C4 . DC A 1 4 ? 12.037 7.630 2.124 1.00 10.00 ? 4 DC A C4 1 ATOM 77 N N4 . DC A 1 4 ? 10.945 7.494 1.473 1.00 10.00 ? 4 DC A N4 1 ATOM 78 C C5 . DC A 1 4 ? 12.307 6.748 3.171 1.00 10.00 ? 4 DC A C5 1 ATOM 79 C C6 . DC A 1 4 ? 13.439 6.922 3.815 1.00 10.00 ? 4 DC A C6 1 ATOM 80 P P . DG A 1 5 ? 14.299 9.387 8.495 1.00 10.00 ? 5 DG A P 1 ATOM 81 O OP1 . DG A 1 5 ? 14.674 9.696 9.842 1.00 10.00 ? 5 DG A OP1 1 ATOM 82 O OP2 . DG A 1 5 ? 13.262 8.411 8.399 1.00 10.00 ? 5 DG A OP2 1 ATOM 83 O "O5'" . DG A 1 5 ? 13.860 10.633 7.694 1.00 10.00 ? 5 DG A "O5'" 1 ATOM 84 C "C5'" . DG A 1 5 ? 14.814 11.520 7.233 1.00 10.00 ? 5 DG A "C5'" 1 ATOM 85 C "C4'" . DG A 1 5 ? 14.278 12.530 6.310 1.00 10.00 ? 5 DG A "C4'" 1 ATOM 86 O "O4'" . DG A 1 5 ? 13.831 11.839 5.134 1.00 10.00 ? 5 DG A "O4'" 1 ATOM 87 C "C3'" . DG A 1 5 ? 13.150 13.344 6.741 1.00 10.00 ? 5 DG A "C3'" 1 ATOM 88 O "O3'" . DG A 1 5 ? 13.346 14.723 6.875 1.00 10.00 ? 5 DG A "O3'" 1 ATOM 89 C "C2'" . DG A 1 5 ? 12.141 13.170 5.675 1.00 10.00 ? 5 DG A "C2'" 1 ATOM 90 C "C1'" . DG A 1 5 ? 12.897 12.599 4.507 1.00 10.00 ? 5 DG A "C1'" 1 ATOM 91 N N9 . DG A 1 5 ? 11.933 11.867 3.715 1.00 10.00 ? 5 DG A N9 1 ATOM 92 C C8 . DG A 1 5 ? 11.310 10.744 4.071 1.00 10.00 ? 5 DG A C8 1 ATOM 93 N N7 . DG A 1 5 ? 10.484 10.328 3.195 1.00 10.00 ? 5 DG A N7 1 ATOM 94 C C5 . DG A 1 5 ? 10.542 11.257 2.213 1.00 10.00 ? 5 DG A C5 1 ATOM 95 C C6 . DG A 1 5 ? 9.854 11.325 1.005 1.00 10.00 ? 5 DG A C6 1 ATOM 96 O O6 . DG A 1 5 ? 9.060 10.565 0.575 1.00 10.00 ? 5 DG A O6 1 ATOM 97 N N1 . DG A 1 5 ? 10.211 12.418 0.299 1.00 10.00 ? 5 DG A N1 1 ATOM 98 C C2 . DG A 1 5 ? 11.109 13.319 0.688 1.00 10.00 ? 5 DG A C2 1 ATOM 99 N N2 . DG A 1 5 ? 11.308 14.295 -0.139 1.00 10.00 ? 5 DG A N2 1 ATOM 100 N N3 . DG A 1 5 ? 11.757 13.252 1.805 1.00 10.00 ? 5 DG A N3 1 ATOM 101 C C4 . DG A 1 5 ? 11.419 12.201 2.521 1.00 10.00 ? 5 DG A C4 1 ATOM 102 P P . DG A 1 6 ? 12.063 15.524 7.229 1.00 10.00 ? 6 DG A P 1 ATOM 103 O OP1 . DG A 1 6 ? 12.436 16.580 8.137 1.00 10.00 ? 6 DG A OP1 1 ATOM 104 O OP2 . DG A 1 6 ? 11.039 14.638 7.666 1.00 10.00 ? 6 DG A OP2 1 ATOM 105 O "O5'" . DG A 1 6 ? 11.691 16.112 5.831 1.00 10.00 ? 6 DG A "O5'" 1 ATOM 106 C "C5'" . DG A 1 6 ? 12.612 16.880 5.158 1.00 10.00 ? 6 DG A "C5'" 1 ATOM 107 C "C4'" . DG A 1 6 ? 11.991 17.588 4.026 1.00 10.00 ? 6 DG A "C4'" 1 ATOM 108 O "O4'" . DG A 1 6 ? 11.854 16.735 2.898 1.00 10.00 ? 6 DG A "O4'" 1 ATOM 109 C "C3'" . DG A 1 6 ? 10.659 18.156 4.216 1.00 10.00 ? 6 DG A "C3'" 1 ATOM 110 O "O3'" . DG A 1 6 ? 10.761 19.391 4.792 1.00 10.00 ? 6 DG A "O3'" 1 ATOM 111 C "C2'" . DG A 1 6 ? 10.200 18.273 2.788 1.00 10.00 ? 6 DG A "C2'" 1 ATOM 112 C "C1'" . DG A 1 6 ? 10.692 17.038 2.221 1.00 10.00 ? 6 DG A "C1'" 1 ATOM 113 N N9 . DG A 1 6 ? 9.898 15.888 2.528 1.00 10.00 ? 6 DG A N9 1 ATOM 114 C C8 . DG A 1 6 ? 10.072 15.006 3.522 1.00 10.00 ? 6 DG A C8 1 ATOM 115 N N7 . DG A 1 6 ? 9.215 14.087 3.528 1.00 10.00 ? 6 DG A N7 1 ATOM 116 C C5 . DG A 1 6 ? 8.411 14.382 2.478 1.00 10.00 ? 6 DG A C5 1 ATOM 117 C C6 . DG A 1 6 ? 7.293 13.745 1.996 1.00 10.00 ? 6 DG A C6 1 ATOM 118 O O6 . DG A 1 6 ? 6.793 12.754 2.423 1.00 10.00 ? 6 DG A O6 1 ATOM 119 N N1 . DG A 1 6 ? 6.791 14.377 0.910 1.00 10.00 ? 6 DG A N1 1 ATOM 120 C C2 . DG A 1 6 ? 7.290 15.483 0.364 1.00 10.00 ? 6 DG A C2 1 ATOM 121 N N2 . DG A 1 6 ? 6.674 15.997 -0.668 1.00 10.00 ? 6 DG A N2 1 ATOM 122 N N3 . DG A 1 6 ? 8.322 16.089 0.813 1.00 10.00 ? 6 DG A N3 1 ATOM 123 C C4 . DG A 1 6 ? 8.834 15.475 1.860 1.00 10.00 ? 6 DG A C4 1 ATOM 124 P P . DC A 1 7 ? 9.528 20.044 5.430 1.00 10.00 ? 7 DC A P 1 ATOM 125 O OP1 . DC A 1 7 ? 9.843 21.393 5.728 1.00 10.00 ? 7 DC A OP1 1 ATOM 126 O OP2 . DC A 1 7 ? 9.147 19.201 6.535 1.00 10.00 ? 7 DC A OP2 1 ATOM 127 O "O5'" . DC A 1 7 ? 8.446 19.980 4.342 1.00 10.00 ? 7 DC A "O5'" 1 ATOM 128 C "C5'" . DC A 1 7 ? 8.313 21.052 3.462 1.00 10.00 ? 7 DC A "C5'" 1 ATOM 129 C "C4'" . DC A 1 7 ? 7.180 20.851 2.600 1.00 10.00 ? 7 DC A "C4'" 1 ATOM 130 O "O4'" . DC A 1 7 ? 7.169 19.583 2.017 1.00 10.00 ? 7 DC A "O4'" 1 ATOM 131 C "C3'" . DC A 1 7 ? 5.863 20.912 3.287 1.00 10.00 ? 7 DC A "C3'" 1 ATOM 132 O "O3'" . DC A 1 7 ? 5.593 22.180 3.669 1.00 10.00 ? 7 DC A "O3'" 1 ATOM 133 C "C2'" . DC A 1 7 ? 5.033 20.368 2.177 1.00 10.00 ? 7 DC A "C2'" 1 ATOM 134 C "C1'" . DC A 1 7 ? 5.852 19.244 1.769 1.00 10.00 ? 7 DC A "C1'" 1 ATOM 135 N N1 . DC A 1 7 ? 5.674 18.018 2.524 1.00 10.00 ? 7 DC A N1 1 ATOM 136 C C2 . DC A 1 7 ? 4.798 17.137 2.002 1.00 10.00 ? 7 DC A C2 1 ATOM 137 O O2 . DC A 1 7 ? 4.231 17.474 0.990 1.00 10.00 ? 7 DC A O2 1 ATOM 138 N N3 . DC A 1 7 ? 4.622 16.000 2.635 1.00 10.00 ? 7 DC A N3 1 ATOM 139 C C4 . DC A 1 7 ? 5.292 15.709 3.722 1.00 10.00 ? 7 DC A C4 1 ATOM 140 N N4 . DC A 1 7 ? 5.086 14.588 4.305 1.00 10.00 ? 7 DC A N4 1 ATOM 141 C C5 . DC A 1 7 ? 6.207 16.596 4.261 1.00 10.00 ? 7 DC A C5 1 ATOM 142 C C6 . DC A 1 7 ? 6.351 17.732 3.620 1.00 10.00 ? 7 DC A C6 1 ATOM 143 P P . DC A 1 8 ? 4.347 22.575 4.472 1.00 10.00 ? 8 DC A P 1 ATOM 144 O OP1 . DC A 1 8 ? 4.112 23.970 4.307 1.00 10.00 ? 8 DC A OP1 1 ATOM 145 O OP2 . DC A 1 8 ? 4.415 22.065 5.815 1.00 10.00 ? 8 DC A OP2 1 ATOM 146 O "O5'" . DC A 1 8 ? 3.213 21.852 3.695 1.00 10.00 ? 8 DC A "O5'" 1 ATOM 147 C "C5'" . DC A 1 8 ? 2.361 22.594 2.877 1.00 10.00 ? 8 DC A "C5'" 1 ATOM 148 C "C4'" . DC A 1 8 ? 1.171 21.841 2.505 1.00 10.00 ? 8 DC A "C4'" 1 ATOM 149 O "O4'" . DC A 1 8 ? 1.529 20.562 2.049 1.00 10.00 ? 8 DC A "O4'" 1 ATOM 150 C "C3'" . DC A 1 8 ? 0.200 21.601 3.606 1.00 10.00 ? 8 DC A "C3'" 1 ATOM 151 O "O3'" . DC A 1 8 ? -0.548 22.726 3.907 1.00 10.00 ? 8 DC A "O3'" 1 ATOM 152 C "C2'" . DC A 1 8 ? -0.529 20.422 3.046 1.00 10.00 ? 8 DC A "C2'" 1 ATOM 153 C "C1'" . DC A 1 8 ? 0.569 19.631 2.431 1.00 10.00 ? 8 DC A "C1'" 1 ATOM 154 N N1 . DC A 1 8 ? 1.202 18.668 3.311 1.00 10.00 ? 8 DC A N1 1 ATOM 155 C C2 . DC A 1 8 ? 0.700 17.418 3.375 1.00 10.00 ? 8 DC A C2 1 ATOM 156 O O2 . DC A 1 8 ? -0.254 17.140 2.693 1.00 10.00 ? 8 DC A O2 1 ATOM 157 N N3 . DC A 1 8 ? 1.281 16.555 4.181 1.00 10.00 ? 8 DC A N3 1 ATOM 158 C C4 . DC A 1 8 ? 2.296 16.876 4.919 1.00 10.00 ? 8 DC A C4 1 ATOM 159 N N4 . DC A 1 8 ? 2.815 16.002 5.702 1.00 10.00 ? 8 DC A N4 1 ATOM 160 C C5 . DC A 1 8 ? 2.815 18.152 4.875 1.00 10.00 ? 8 DC A C5 1 ATOM 161 C C6 . DC A 1 8 ? 2.234 19.000 4.052 1.00 10.00 ? 8 DC A C6 1 #