HEADER DNA 01-MAR-92 1VTH TITLE DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURES OF D(TGTACA) COMPLEXED TITLE 2 WITH DAUNOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*GP*TP*AP*CP*A)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA EXPDTA X-RAY DIFFRACTION AUTHOR C.M.NUNN,L.VAN MEERVELT,S.ZHANG,M.H.MOORE,O.KENNARD REVDAT 2 27-DEC-23 1VTH 1 REMARK REVDAT 1 13-JUL-11 1VTH 0 JRNL AUTH C.M.NUNN,L.VAN MEERVELT,S.ZHANG,M.H.MOORE,O.KENNARD JRNL TITL DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURES OF D(TGTACA) JRNL TITL 2 AND D(TGATCA) COMPLEXED WITH DAUNOMYCIN JRNL REF J.MOL.BIOL. V. 222 167 1991 JRNL REFN ISSN 0022-2836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.H.MOORE,W.N.HUNTER,B.L.D'ESTAINTOT,O.KENNARD REMARK 1 TITL DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURE OF D(CGATCG) REMARK 1 TITL 2 COMPLEXED WITH DAUNOMYCIN REMARK 1 REF J.MOL.BIOL. V. 206 693 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NUCLSQ REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 1811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 120 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BOND DISTANCE (A) : NULL ; NULL REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BONDS DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BONDS (A**2) : NULL ; NULL REMARK 3 SUGAR-BASE ANGLES (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BONDS (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VTH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000003041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 275.00 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : SYNTEX P21 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4852 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.50, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.35500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 14.01000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 14.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.17750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 14.01000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 14.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.53250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 14.01000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 14.01000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.17750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 14.01000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 14.01000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.53250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.35500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 28.02000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 28.02000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.35500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 15 O HOH A 51 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 1 C5' DT A 1 C4' 0.087 REMARK 500 DT A 1 N3 DT A 1 C4 -0.068 REMARK 500 DT A 1 C4 DT A 1 C5 -0.079 REMARK 500 DT A 1 C5 DT A 1 C6 -0.077 REMARK 500 DT A 1 C4 DT A 1 O4 0.062 REMARK 500 DG A 2 P DG A 2 OP2 0.118 REMARK 500 DG A 2 C4' DG A 2 C3' 0.065 REMARK 500 DG A 2 O4' DG A 2 C4' -0.063 REMARK 500 DG A 2 N1 DG A 2 C2 -0.112 REMARK 500 DG A 2 N3 DG A 2 C4 0.046 REMARK 500 DG A 2 C4 DG A 2 C5 0.043 REMARK 500 DG A 2 C5 DG A 2 N7 0.077 REMARK 500 DG A 2 N9 DG A 2 C4 0.061 REMARK 500 DG A 2 C2 DG A 2 N2 -0.074 REMARK 500 DT A 3 C2 DT A 3 N3 0.052 REMARK 500 DT A 3 N3 DT A 3 C4 -0.139 REMARK 500 DT A 3 C4 DT A 3 C5 -0.089 REMARK 500 DT A 3 C2 DT A 3 O2 0.140 REMARK 500 DA A 4 P DA A 4 OP2 0.128 REMARK 500 DA A 4 P DA A 4 O5' -0.087 REMARK 500 DA A 4 O3' DA A 4 C3' -0.042 REMARK 500 DA A 4 N1 DA A 4 C2 -0.056 REMARK 500 DA A 4 N3 DA A 4 C4 -0.041 REMARK 500 DC A 5 C2' DC A 5 C1' 0.088 REMARK 500 DC A 5 C2 DC A 5 O2 0.082 REMARK 500 DC A 5 C5 DC A 5 C6 0.062 REMARK 500 DA A 6 O3' DA A 6 C3' -0.038 REMARK 500 DA A 6 N9 DA A 6 C4 -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 1 O5' - C5' - C4' ANGL. DEV. = -11.2 DEGREES REMARK 500 DT A 1 O4' - C1' - C2' ANGL. DEV. = -6.0 DEGREES REMARK 500 DT A 1 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DT A 1 N3 - C4 - C5 ANGL. DEV. = 5.1 DEGREES REMARK 500 DT A 1 N3 - C2 - O2 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT A 1 N3 - C4 - O4 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG A 2 O3' - P - OP1 ANGL. DEV. = -16.1 DEGREES REMARK 500 DG A 2 O5' - P - OP2 ANGL. DEV. = 9.6 DEGREES REMARK 500 DG A 2 P - O5' - C5' ANGL. DEV. = -17.3 DEGREES REMARK 500 DG A 2 O4' - C4' - C3' ANGL. DEV. = 10.0 DEGREES REMARK 500 DG A 2 C5' - C4' - C3' ANGL. DEV. = -11.5 DEGREES REMARK 500 DG A 2 C1' - O4' - C4' ANGL. DEV. = -8.9 DEGREES REMARK 500 DG A 2 C4' - C3' - C2' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG A 2 C6 - N1 - C2 ANGL. DEV. = 11.8 DEGREES REMARK 500 DG A 2 C2 - N3 - C4 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG A 2 C5 - C6 - N1 ANGL. DEV. = -7.1 DEGREES REMARK 500 DG A 2 C4 - C5 - N7 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG A 2 C5 - N7 - C8 ANGL. DEV. = -7.6 DEGREES REMARK 500 DG A 2 N7 - C8 - N9 ANGL. DEV. = 8.7 DEGREES REMARK 500 DG A 2 N9 - C4 - C5 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG A 2 N3 - C4 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG A 2 N1 - C6 - O6 ANGL. DEV. = 17.6 DEGREES REMARK 500 DG A 2 C5 - C6 - O6 ANGL. DEV. = -10.6 DEGREES REMARK 500 DG A 2 C8 - N9 - C1' ANGL. DEV. = 9.9 DEGREES REMARK 500 DG A 2 C4 - N9 - C1' ANGL. DEV. = -9.0 DEGREES REMARK 500 DG A 2 C3' - O3' - P ANGL. DEV. = 16.6 DEGREES REMARK 500 DT A 3 OP1 - P - OP2 ANGL. DEV. = 10.2 DEGREES REMARK 500 DT A 3 O5' - C5' - C4' ANGL. DEV. = -7.3 DEGREES REMARK 500 DT A 3 P - O5' - C5' ANGL. DEV. = -11.5 DEGREES REMARK 500 DT A 3 C5' - C4' - O4' ANGL. DEV. = 6.7 DEGREES REMARK 500 DT A 3 N1 - C1' - C2' ANGL. DEV. = -11.5 DEGREES REMARK 500 DT A 3 C6 - N1 - C2 ANGL. DEV. = -6.8 DEGREES REMARK 500 DT A 3 C2 - N3 - C4 ANGL. DEV. = -6.3 DEGREES REMARK 500 DT A 3 N3 - C4 - C5 ANGL. DEV. = 7.8 DEGREES REMARK 500 DT A 3 N1 - C2 - O2 ANGL. DEV. = -8.9 DEGREES REMARK 500 DT A 3 N3 - C2 - O2 ANGL. DEV. = 5.5 DEGREES REMARK 500 DT A 3 N3 - C4 - O4 ANGL. DEV. = -6.0 DEGREES REMARK 500 DT A 3 C4 - C5 - C7 ANGL. DEV. = 10.2 DEGREES REMARK 500 DT A 3 C6 - C5 - C7 ANGL. DEV. = -8.4 DEGREES REMARK 500 DT A 3 C6 - N1 - C1' ANGL. DEV. = 10.8 DEGREES REMARK 500 DT A 3 C3' - O3' - P ANGL. DEV. = 26.5 DEGREES REMARK 500 DA A 4 O3' - P - O5' ANGL. DEV. = 20.8 DEGREES REMARK 500 DA A 4 O3' - P - OP2 ANGL. DEV. = -13.4 DEGREES REMARK 500 DA A 4 OP1 - P - OP2 ANGL. DEV. = -18.5 DEGREES REMARK 500 DA A 4 O4' - C4' - C3' ANGL. DEV. = 5.3 DEGREES REMARK 500 DA A 4 C5' - C4' - O4' ANGL. DEV. = 6.7 DEGREES REMARK 500 DA A 4 C1' - O4' - C4' ANGL. DEV. = -6.9 DEGREES REMARK 500 DA A 4 O4' - C1' - C2' ANGL. DEV. = 4.6 DEGREES REMARK 500 DA A 4 O4' - C1' - N9 ANGL. DEV. = -13.1 DEGREES REMARK 500 DA A 4 N9 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 75 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DM1 A 7 DBREF 1VTH A 1 6 PDB 1VTH 1VTH 1 6 SEQRES 1 A 6 DT DG DT DA DC DA HET DM1 A 7 38 HETNAM DM1 DAUNOMYCIN HETSYN DM1 DAUNORUBICIN FORMUL 2 DM1 C27 H29 N O10 FORMUL 3 HOH *44(H2 O) SITE 1 AC1 10 DT A 1 DG A 2 DT A 3 DC A 5 SITE 2 AC1 10 DA A 6 HOH A 15 HOH A 20 HOH A 22 SITE 3 AC1 10 HOH A 36 HOH A 40 CRYST1 28.020 28.020 52.710 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035689 0.000000 0.000000 0.00000 SCALE2 0.000000 0.035689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018972 0.00000 ATOM 1 O5' DT A 1 18.209 7.936 22.837 1.00 26.06 O ATOM 2 C5' DT A 1 18.080 6.891 23.875 1.00 4.85 C ATOM 3 C4' DT A 1 16.505 7.009 24.123 1.00 5.43 C ATOM 4 O4' DT A 1 16.444 8.205 24.887 1.00 12.60 O ATOM 5 C3' DT A 1 15.572 7.233 22.964 1.00 17.14 C ATOM 6 O3' DT A 1 14.233 6.712 23.006 1.00 17.04 O ATOM 7 C2' DT A 1 15.595 8.808 22.858 1.00 14.13 C ATOM 8 C1' DT A 1 15.502 9.169 24.334 1.00 2.34 C ATOM 9 N1 DT A 1 15.987 10.570 24.413 1.00 9.93 N ATOM 10 C2 DT A 1 15.026 11.557 24.582 1.00 5.34 C ATOM 11 O2 DT A 1 13.818 11.254 24.634 1.00 4.20 O ATOM 12 N3 DT A 1 15.542 12.787 24.613 1.00 2.93 N ATOM 13 C4 DT A 1 16.819 13.092 24.561 1.00 3.12 C ATOM 14 O4 DT A 1 17.105 14.348 24.624 1.00 1.89 O ATOM 15 C5 DT A 1 17.755 12.111 24.397 1.00 2.60 C ATOM 16 C7 DT A 1 19.241 12.442 24.334 1.00 3.29 C ATOM 17 C6 DT A 1 17.343 10.923 24.292 1.00 3.63 C ATOM 18 P DG A 2 13.913 5.319 22.284 1.00 16.02 P ATOM 19 OP1 DG A 2 13.137 4.901 23.485 1.00 26.80 O ATOM 20 OP2 DG A 2 15.404 4.806 21.994 1.00 14.71 O ATOM 21 O5' DG A 2 12.888 5.543 21.077 1.00 18.05 O ATOM 22 C5' DG A 2 12.355 6.930 21.319 1.00 11.33 C ATOM 23 C4' DG A 2 11.814 7.703 20.133 1.00 7.47 C ATOM 24 O4' DG A 2 12.473 8.903 19.938 1.00 9.23 O ATOM 25 C3' DG A 2 11.924 6.644 18.947 1.00 5.87 C ATOM 26 O3' DG A 2 10.685 6.745 18.236 1.00 17.61 O ATOM 27 C2' DG A 2 13.230 7.177 18.373 1.00 3.98 C ATOM 28 C1' DG A 2 13.047 8.698 18.631 1.00 13.24 C ATOM 29 N9 DG A 2 14.258 9.475 18.526 1.00 8.57 N ATOM 30 C8 DG A 2 15.584 9.236 18.526 1.00 12.20 C ATOM 31 N7 DG A 2 16.455 10.198 18.415 1.00 7.91 N ATOM 32 C5 DG A 2 15.488 11.293 18.310 1.00 6.45 C ATOM 33 C6 DG A 2 15.780 12.731 18.136 1.00 2.96 C ATOM 34 O6 DG A 2 16.973 13.075 18.004 1.00 4.46 O ATOM 35 N1 DG A 2 14.555 13.322 18.094 1.00 2.73 N ATOM 36 C2 DG A 2 13.353 12.961 18.220 1.00 3.70 C ATOM 37 N2 DG A 2 12.481 13.880 18.189 1.00 6.22 N ATOM 38 N3 DG A 2 12.975 11.691 18.357 1.00 8.62 N ATOM 39 C4 DG A 2 14.124 10.898 18.389 1.00 6.30 C ATOM 40 P DT A 3 10.046 6.087 16.918 1.00 11.69 P ATOM 41 OP1 DT A 3 9.119 5.179 17.572 1.00 21.22 O ATOM 42 OP2 DT A 3 11.355 5.804 16.254 1.00 20.16 O ATOM 43 O5' DT A 3 9.074 7.126 16.186 1.00 9.18 O ATOM 44 C5' DT A 3 8.197 7.760 17.182 1.00 9.08 C ATOM 45 C4' DT A 3 8.062 9.124 16.650 1.00 2.81 C ATOM 46 O4' DT A 3 9.074 10.032 16.992 1.00 12.09 O ATOM 47 C3' DT A 3 7.894 9.200 15.111 1.00 8.51 C ATOM 48 O3' DT A 3 6.580 9.755 14.952 1.00 13.08 O ATOM 49 C2' DT A 3 8.763 10.354 14.647 1.00 11.26 C ATOM 50 C1' DT A 3 9.312 10.932 15.917 1.00 8.40 C ATOM 51 N1 DT A 3 10.750 10.949 15.622 1.00 2.18 N ATOM 52 C2 DT A 3 11.274 12.229 15.411 1.00 3.19 C ATOM 53 O2 DT A 3 10.368 13.233 15.553 1.00 3.91 O ATOM 54 N3 DT A 3 12.672 12.344 15.158 1.00 8.27 N ATOM 55 C4 DT A 3 13.373 11.333 14.979 1.00 5.39 C ATOM 56 O4 DT A 3 14.589 11.590 14.705 1.00 3.30 O ATOM 57 C5 DT A 3 12.907 10.071 15.147 1.00 7.57 C ATOM 58 C7 DT A 3 13.658 8.746 15.052 1.00 3.68 C ATOM 59 C6 DT A 3 11.621 9.954 15.422 1.00 4.32 C ATOM 60 P DA A 4 5.523 10.349 13.946 1.00 12.26 P ATOM 61 OP1 DA A 4 4.122 10.455 14.568 1.00 12.55 O ATOM 62 OP2 DA A 4 5.408 8.945 13.160 1.00 7.24 O ATOM 63 O5' DA A 4 5.759 11.540 13.055 1.00 3.02 O ATOM 64 C5' DA A 4 5.848 12.764 13.777 1.00 6.36 C ATOM 65 C4' DA A 4 6.437 14.006 13.066 1.00 1.91 C ATOM 66 O4' DA A 4 7.928 14.101 13.018 1.00 7.93 O ATOM 67 C3' DA A 4 5.843 13.992 11.679 1.00 4.69 C ATOM 68 O3' DA A 4 4.957 14.987 11.332 1.00 17.32 O ATOM 69 C2' DA A 4 7.014 14.017 10.778 1.00 4.67 C ATOM 70 C1' DA A 4 8.200 14.325 11.616 1.00 9.55 C ATOM 71 N9 DA A 4 9.379 13.417 11.569 1.00 3.70 N ATOM 72 C8 DA A 4 9.461 12.019 11.690 1.00 6.99 C ATOM 73 N7 DA A 4 10.666 11.610 11.748 1.00 2.96 N ATOM 74 C5 DA A 4 11.405 12.767 11.653 1.00 7.62 C ATOM 75 C6 DA A 4 12.823 13.003 11.574 1.00 7.51 C ATOM 76 N6 DA A 4 13.681 11.980 11.627 1.00 7.65 N ATOM 77 N1 DA A 4 13.188 14.334 11.505 1.00 13.27 N ATOM 78 C2 DA A 4 12.299 15.259 11.474 1.00 11.04 C ATOM 79 N3 DA A 4 11.007 15.144 11.521 1.00 13.45 N ATOM 80 C4 DA A 4 10.637 13.897 11.590 1.00 11.56 C ATOM 81 P DC A 5 4.335 15.323 9.935 1.00 12.18 P ATOM 82 OP1 DC A 5 3.343 16.307 10.167 1.00 11.78 O ATOM 83 OP2 DC A 5 3.464 14.527 9.134 1.00 17.15 O ATOM 84 O5' DC A 5 5.532 15.172 8.849 1.00 29.03 O ATOM 85 C5' DC A 5 6.451 16.085 9.165 1.00 14.64 C ATOM 86 C4' DC A 5 7.238 16.469 7.969 1.00 16.41 C ATOM 87 O4' DC A 5 8.200 15.584 8.470 1.00 8.94 O ATOM 88 C3' DC A 5 6.969 16.116 6.551 1.00 9.08 C ATOM 89 O3' DC A 5 7.367 16.932 5.476 1.00 16.67 O ATOM 90 C2' DC A 5 7.589 14.676 6.562 1.00 14.26 C ATOM 91 C1' DC A 5 8.908 15.124 7.363 1.00 2.08 C ATOM 92 N1 DC A 5 9.816 13.964 7.753 1.00 12.83 N ATOM 93 C2 DC A 5 11.106 14.171 8.122 1.00 2.99 C ATOM 94 O2 DC A 5 11.652 15.373 8.053 1.00 6.80 O ATOM 95 N3 DC A 5 11.870 13.151 8.412 1.00 3.12 N ATOM 96 C4 DC A 5 11.366 11.901 8.470 1.00 1.70 C ATOM 97 N4 DC A 5 12.039 10.783 8.786 1.00 7.13 N ATOM 98 C5 DC A 5 10.007 11.607 8.175 1.00 2.42 C ATOM 99 C6 DC A 5 9.262 12.759 7.890 1.00 3.33 C ATOM 100 P DA A 6 6.913 18.271 4.791 1.00 7.57 P ATOM 101 OP1 DA A 6 6.969 19.350 5.861 1.00 22.61 O ATOM 102 OP2 DA A 6 5.717 17.895 4.037 1.00 15.29 O ATOM 103 O5' DA A 6 7.925 18.930 3.753 1.00 2.91 O ATOM 104 C5' DA A 6 9.007 19.602 4.464 1.00 5.35 C ATOM 105 C4' DA A 6 9.990 20.227 3.547 1.00 5.73 C ATOM 106 O4' DA A 6 10.951 19.297 3.094 1.00 5.62 O ATOM 107 C3' DA A 6 9.475 20.788 2.235 1.00 2.57 C ATOM 108 O3' DA A 6 10.475 21.295 1.428 1.00 12.96 O ATOM 109 C2' DA A 6 9.410 19.468 1.397 1.00 4.11 C ATOM 110 C1' DA A 6 10.797 18.921 1.739 1.00 8.22 C ATOM 111 N9 DA A 6 10.674 17.439 1.650 1.00 2.52 N ATOM 112 C8 DA A 6 9.612 16.643 1.676 1.00 6.75 C ATOM 113 N7 DA A 6 9.800 15.326 1.634 1.00 4.50 N ATOM 114 C5 DA A 6 11.201 15.289 1.576 1.00 9.63 C ATOM 115 C6 DA A 6 12.086 14.236 1.449 1.00 3.08 C ATOM 116 N6 DA A 6 11.680 12.972 1.407 1.00 4.04 N ATOM 117 N1 DA A 6 13.387 14.558 1.413 1.00 7.40 N ATOM 118 C2 DA A 6 13.832 15.833 1.476 1.00 3.61 C ATOM 119 N3 DA A 6 13.033 16.954 1.528 1.00 3.44 N ATOM 120 C4 DA A 6 11.722 16.609 1.608 1.00 3.06 C TER 121 DA A 6 HETATM 122 C1 DM1 A 7 12.804 9.615 5.176 1.00 4.93 C HETATM 123 C2 DM1 A 7 11.587 8.914 5.202 1.00 8.22 C HETATM 124 C3 DM1 A 7 10.427 9.522 5.134 1.00 7.32 C HETATM 125 C4 DM1 A 7 10.290 10.915 5.039 1.00 5.11 C HETATM 126 O4 DM1 A 7 9.116 11.501 4.954 1.00 5.95 O HETATM 127 C5 DM1 A 7 11.447 11.680 4.970 1.00 10.80 C HETATM 128 C6 DM1 A 7 11.425 13.210 4.896 1.00 6.35 C HETATM 129 O6 DM1 A 7 10.422 13.860 4.865 1.00 4.16 O HETATM 130 C7 DM1 A 7 12.770 13.852 4.923 1.00 6.91 C HETATM 131 C8 DM1 A 7 12.792 15.301 4.801 1.00 2.35 C HETATM 132 O8 DM1 A 7 11.618 15.993 4.812 1.00 6.72 O HETATM 133 C9 DM1 A 7 14.003 16.007 4.764 1.00 7.39 C HETATM 134 C10 DM1 A 7 14.034 17.526 4.902 1.00 3.38 C HETATM 135 O10 DM1 A 7 13.658 17.870 6.177 1.00 14.18 O HETATM 136 C11 DM1 A 7 15.603 17.952 4.659 1.00 4.11 C HETATM 137 C12 DM1 A 7 16.710 17.189 5.170 1.00 10.22 C HETATM 138 O12 DM1 A 7 16.483 17.181 6.609 1.00 8.91 O HETATM 139 C13 DM1 A 7 18.237 17.610 4.891 1.00 19.58 C HETATM 140 O13 DM1 A 7 18.447 17.938 3.763 1.00 14.11 O HETATM 141 C14 DM1 A 7 18.913 18.310 6.030 1.00 26.70 C HETATM 142 C15 DM1 A 7 16.542 15.813 4.680 1.00 19.48 C HETATM 143 C16 DM1 A 7 15.200 15.289 4.775 1.00 6.99 C HETATM 144 C17 DM1 A 7 15.189 13.846 4.912 1.00 3.29 C HETATM 145 O17 DM1 A 7 16.365 13.190 4.786 1.00 7.54 O HETATM 146 C18 DM1 A 7 13.930 13.190 4.939 1.00 3.36 C HETATM 147 C19 DM1 A 7 13.953 11.733 4.996 1.00 3.37 C HETATM 148 O19 DM1 A 7 15.071 11.013 4.902 1.00 6.32 O HETATM 149 C20 DM1 A 7 12.703 10.999 5.033 1.00 8.30 C HETATM 150 C21 DM1 A 7 7.818 10.685 5.012 1.00 3.00 C HETATM 151 C1' DM1 A 7 12.571 18.778 6.161 1.00 5.73 C HETATM 152 C2' DM1 A 7 11.355 18.722 7.063 1.00 4.27 C HETATM 153 C3' DM1 A 7 11.842 18.633 8.491 1.00 6.89 C HETATM 154 N3' DM1 A 7 10.937 18.447 9.650 1.00 7.37 N HETATM 155 C4' DM1 A 7 12.896 19.599 8.986 1.00 4.37 C HETATM 156 O4' DM1 A 7 11.997 20.706 9.023 1.00 21.46 O HETATM 157 C5' DM1 A 7 13.600 20.255 7.721 1.00 13.92 C HETATM 158 O5' DM1 A 7 13.375 19.927 6.514 1.00 13.50 O HETATM 159 C6' DM1 A 7 14.992 20.628 8.233 1.00 7.65 C HETATM 160 O HOH A 8 14.889 19.616 1.049 1.00 21.49 O HETATM 161 O HOH A 9 7.558 13.995 2.577 1.00 22.37 O HETATM 162 O HOH A 10 7.505 9.881 9.808 1.00 21.76 O HETATM 163 O HOH A 11 3.274 20.957 10.332 1.00 40.16 O HETATM 164 O HOH A 12 5.700 14.471 3.710 1.00 31.74 O HETATM 165 O HOH A 13 10.965 8.172 9.234 1.00 8.95 O HETATM 166 O HOH A 14 17.002 5.252 19.569 1.00 23.19 O HETATM 167 O HOH A 15 8.780 20.109 9.930 1.00 33.44 O HETATM 168 O HOH A 16 0.684 15.914 11.537 1.00 17.75 O HETATM 169 O HOH A 17 17.229 9.909 14.699 1.00 33.09 O HETATM 170 O HOH A 18 5.988 12.002 7.642 1.00 17.45 O HETATM 171 O HOH A 19 4.557 10.965 9.302 1.00 56.19 O HETATM 172 O HOH A 20 11.646 8.838 25.114 1.00 26.54 O HETATM 173 O HOH A 21 11.974 9.805 11.735 1.00 28.90 O HETATM 174 O HOH A 22 11.484 22.407 10.920 1.00 26.63 O HETATM 175 O HOH A 23 -1.750 16.311 13.111 1.00 33.04 O HETATM 176 O HOH A 24 10.845 4.355 14.436 1.00 35.56 O HETATM 177 O HOH A 25 10.209 6.919 12.955 1.00 61.05 O HETATM 178 O HOH A 26 15.175 2.132 19.443 1.00 47.00 O HETATM 179 O HOH A 27 11.792 3.444 19.143 1.00 26.44 O HETATM 180 O HOH A 28 5.058 10.509 19.248 1.00 35.43 O HETATM 181 O HOH A 29 3.982 10.677 17.108 1.00 25.08 O HETATM 182 O HOH A 30 0.000 13.224 9.866 1.00 32.81 O HETATM 183 O HOH A 31 13.793 7.507 7.695 1.00 29.89 O HETATM 184 O HOH A 32 8.045 7.580 12.575 1.00 24.94 O HETATM 185 O HOH A 33 9.138 11.498 1.117 1.00 16.12 O HETATM 186 O HOH A 34 11.492 8.995 1.413 1.00 29.38 O HETATM 187 O HOH A 35 13.378 6.501 11.624 1.00 54.85 O HETATM 188 O HOH A 36 9.133 15.544 14.467 1.00 37.48 O HETATM 189 O HOH A 37 18.590 9.542 18.210 1.00 31.83 O HETATM 190 O HOH A 38 10.102 6.807 25.699 1.00 53.31 O HETATM 191 O HOH A 39 13.327 22.536 4.456 1.00 32.86 O HETATM 192 O HOH A 40 10.895 21.294 6.654 1.00 40.06 O HETATM 193 O HOH A 41 0.727 12.839 17.242 1.00 37.94 O HETATM 194 O HOH A 42 3.401 19.598 8.323 1.00 52.77 O HETATM 195 O HOH A 43 13.580 23.223 9.993 1.00 52.87 O HETATM 196 O HOH A 44 11.590 3.632 25.765 1.00 47.14 O HETATM 197 O HOH A 45 0.398 16.651 7.384 1.00 31.79 O HETATM 198 O HOH A 46 -0.244 18.635 12.491 1.00 42.61 O HETATM 199 O HOH A 47 10.436 0.443 20.847 1.00 59.54 O HETATM 200 O HOH A 48 3.829 19.982 6.002 1.00 59.16 O HETATM 201 O HOH A 49 1.142 19.270 10.235 1.00 37.48 O HETATM 202 O HOH A 50 -2.233 10.968 8.783 1.00 44.31 O HETATM 203 O HOH A 51 6.923 19.928 10.878 1.00 56.83 O CONECT 122 123 149 CONECT 123 122 124 CONECT 124 123 125 CONECT 125 124 126 127 CONECT 126 125 150 CONECT 127 125 128 149 CONECT 128 127 129 130 CONECT 129 128 CONECT 130 128 131 146 CONECT 131 130 132 133 CONECT 132 131 CONECT 133 131 134 143 CONECT 134 133 135 136 CONECT 135 134 151 CONECT 136 134 137 CONECT 137 136 138 139 142 CONECT 138 137 CONECT 139 137 140 141 CONECT 140 139 CONECT 141 139 CONECT 142 137 143 CONECT 143 133 142 144 CONECT 144 143 145 146 CONECT 145 144 CONECT 146 130 144 147 CONECT 147 146 148 149 CONECT 148 147 CONECT 149 122 127 147 CONECT 150 126 CONECT 151 135 152 158 CONECT 152 151 153 CONECT 153 152 154 155 CONECT 154 153 CONECT 155 153 156 157 CONECT 156 155 CONECT 157 155 158 159 CONECT 158 151 157 CONECT 159 157 MASTER 343 0 1 0 0 0 3 6 202 1 38 1 END