HEADER DNA 01-MAR-92 1VTI TITLE DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURES OF D(TGATCA) COMPLEXED TITLE 2 WITH DAUNOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*GP*TP*AP*CP*A)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA EXPDTA X-RAY DIFFRACTION AUTHOR C.M.NUNN,L.VAN MEERVELT,S.ZHANG,M.H.MOORE,O.KENNARD REVDAT 2 27-DEC-23 1VTI 1 REMARK REVDAT 1 13-JUL-11 1VTI 0 JRNL AUTH C.M.NUNN,L.VAN MEERVELT,S.ZHANG,M.H.MOORE,O.KENNARD JRNL TITL DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURES OF D(TGTACA) JRNL TITL 2 AND D(TGATCA) COMPLEXED WITH DAUNOMYCIN JRNL REF J.MOL.BIOL. V. 222 167 1991 JRNL REFN ISSN 0022-2836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.H.MOORE,W.N.HUNTER,B.L.D'ESTAINTOT,O.KENNARD REMARK 1 TITL DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURE OF D(CGATCG) REMARK 1 TITL 2 COMPLEXED WITH DAUNOMYCIN REMARK 1 REF J.MOL.BIOL. V. 206 693 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NUCLSQ REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 1885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 120 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BOND DISTANCE (A) : NULL ; NULL REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BONDS DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BONDS (A**2) : NULL ; NULL REMARK 3 SUGAR-BASE ANGLES (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BONDS (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VTI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000003042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 275.00 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : SYNTEX P21 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2626 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.50, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.44000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 14.05500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 14.05500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.22000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 14.05500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 14.05500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.66000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 14.05500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 14.05500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.22000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 14.05500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 14.05500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.66000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.44000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 28.11000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 28.11000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.44000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O5' DM1 A 7 O HOH A 50 1.64 REMARK 500 O HOH A 50 O HOH A 58 1.65 REMARK 500 O HOH A 27 O HOH A 39 1.66 REMARK 500 O HOH A 51 O HOH A 57 1.92 REMARK 500 O HOH A 27 O HOH A 48 2.00 REMARK 500 O HOH A 40 O HOH A 47 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 1 C4 DT A 1 C5 -0.057 REMARK 500 DT A 1 C4 DT A 1 O4 0.106 REMARK 500 DG A 2 C3' DG A 2 C2' 0.080 REMARK 500 DG A 2 C2' DG A 2 C1' 0.065 REMARK 500 DG A 2 O3' DG A 2 C3' -0.058 REMARK 500 DG A 2 N1 DG A 2 C2 -0.097 REMARK 500 DG A 2 N7 DG A 2 C8 0.041 REMARK 500 DG A 2 C6 DG A 2 O6 0.061 REMARK 500 DA A 3 O4' DA A 3 C4' -0.070 REMARK 500 DA A 3 N1 DA A 3 C2 -0.080 REMARK 500 DA A 3 N3 DA A 3 C4 0.092 REMARK 500 DA A 3 C6 DA A 3 N1 0.058 REMARK 500 DA A 3 C5 DA A 3 N7 -0.056 REMARK 500 DA A 3 N7 DA A 3 C8 -0.056 REMARK 500 DA A 3 C6 DA A 3 N6 0.062 REMARK 500 DT A 4 C2' DT A 4 C1' -0.069 REMARK 500 DT A 4 O4' DT A 4 C4' -0.109 REMARK 500 DT A 4 C2 DT A 4 N3 -0.049 REMARK 500 DC A 5 C4 DC A 5 N4 0.058 REMARK 500 DC A 5 C2 DC A 5 N3 0.062 REMARK 500 DC A 5 C4 DC A 5 C5 -0.089 REMARK 500 DA A 6 C5' DA A 6 C4' 0.046 REMARK 500 DA A 6 N1 DA A 6 C2 0.083 REMARK 500 DA A 6 C2 DA A 6 N3 0.088 REMARK 500 DA A 6 N3 DA A 6 C4 0.068 REMARK 500 DA A 6 C5 DA A 6 N7 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 1 O5' - C5' - C4' ANGL. DEV. = -10.6 DEGREES REMARK 500 DT A 1 C5' - C4' - O4' ANGL. DEV. = 11.5 DEGREES REMARK 500 DT A 1 C3' - C2' - C1' ANGL. DEV. = -6.2 DEGREES REMARK 500 DT A 1 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT A 1 N1 - C1' - C2' ANGL. DEV. = -14.1 DEGREES REMARK 500 DT A 1 C6 - N1 - C2 ANGL. DEV. = 7.4 DEGREES REMARK 500 DT A 1 C2 - N3 - C4 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT A 1 N3 - C4 - C5 ANGL. DEV. = 7.6 DEGREES REMARK 500 DT A 1 C5 - C6 - N1 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT A 1 C5 - C4 - O4 ANGL. DEV. = -8.9 DEGREES REMARK 500 DT A 1 C4 - C5 - C7 ANGL. DEV. = 4.9 DEGREES REMARK 500 DG A 2 O3' - P - O5' ANGL. DEV. = 12.8 DEGREES REMARK 500 DG A 2 O3' - P - OP1 ANGL. DEV. = -21.0 DEGREES REMARK 500 DG A 2 O5' - P - OP2 ANGL. DEV. = 13.0 DEGREES REMARK 500 DG A 2 C4' - C3' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG A 2 O4' - C1' - C2' ANGL. DEV. = -10.3 DEGREES REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 17.0 DEGREES REMARK 500 DG A 2 C6 - N1 - C2 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG A 2 N3 - C4 - C5 ANGL. DEV. = -4.0 DEGREES REMARK 500 DG A 2 C4 - C5 - C6 ANGL. DEV. = 5.4 DEGREES REMARK 500 DG A 2 C5 - C6 - N1 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG A 2 C8 - N9 - C4 ANGL. DEV. = -3.9 DEGREES REMARK 500 DG A 2 N9 - C4 - C5 ANGL. DEV. = 4.7 DEGREES REMARK 500 DG A 2 C6 - C5 - N7 ANGL. DEV. = -4.7 DEGREES REMARK 500 DG A 2 N1 - C6 - O6 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG A 2 C3' - O3' - P ANGL. DEV. = 12.5 DEGREES REMARK 500 DA A 3 O5' - C5' - C4' ANGL. DEV. = -8.8 DEGREES REMARK 500 DA A 3 C1' - O4' - C4' ANGL. DEV. = 6.7 DEGREES REMARK 500 DA A 3 O4' - C1' - C2' ANGL. DEV. = -8.0 DEGREES REMARK 500 DA A 3 O4' - C1' - N9 ANGL. DEV. = 9.3 DEGREES REMARK 500 DA A 3 C2 - N3 - C4 ANGL. DEV. = -5.0 DEGREES REMARK 500 DA A 3 C5 - N7 - C8 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA A 3 C8 - N9 - C4 ANGL. DEV. = -3.4 DEGREES REMARK 500 DA A 3 N1 - C6 - N6 ANGL. DEV. = 6.9 DEGREES REMARK 500 DA A 3 C5 - C6 - N6 ANGL. DEV. = -4.9 DEGREES REMARK 500 DA A 3 C3' - O3' - P ANGL. DEV. = 24.6 DEGREES REMARK 500 DT A 4 O3' - P - O5' ANGL. DEV. = 19.1 DEGREES REMARK 500 DT A 4 O5' - P - OP1 ANGL. DEV. = -11.7 DEGREES REMARK 500 DT A 4 O5' - P - OP2 ANGL. DEV. = 9.6 DEGREES REMARK 500 DT A 4 O5' - C5' - C4' ANGL. DEV. = -13.8 DEGREES REMARK 500 DT A 4 P - O5' - C5' ANGL. DEV. = -11.8 DEGREES REMARK 500 DT A 4 O4' - C4' - C3' ANGL. DEV. = -3.3 DEGREES REMARK 500 DT A 4 C5' - C4' - C3' ANGL. DEV. = 7.5 DEGREES REMARK 500 DT A 4 C4' - C3' - C2' ANGL. DEV. = 11.8 DEGREES REMARK 500 DT A 4 C3' - C2' - C1' ANGL. DEV. = -8.3 DEGREES REMARK 500 DT A 4 O4' - C1' - C2' ANGL. DEV. = 4.8 DEGREES REMARK 500 DT A 4 C2 - N3 - C4 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT A 4 C4 - C5 - C7 ANGL. DEV. = -4.1 DEGREES REMARK 500 DC A 5 OP1 - P - OP2 ANGL. DEV. = -17.1 DEGREES REMARK 500 DC A 5 O5' - P - OP1 ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 73 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC A 5 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DM1 A 7 DBREF 1VTI A 1 6 PDB 1VTI 1VTI 1 6 SEQRES 1 A 6 DT DG DA DT DC DA HET DM1 A 7 38 HETNAM DM1 DAUNOMYCIN HETSYN DM1 DAUNORUBICIN FORMUL 2 DM1 C27 H29 N O10 FORMUL 3 HOH *52(H2 O) SITE 1 AC1 10 DT A 1 DG A 2 DA A 3 DT A 4 SITE 2 AC1 10 DC A 5 DA A 6 HOH A 10 HOH A 42 SITE 3 AC1 10 HOH A 50 HOH A 58 CRYST1 28.110 28.110 52.880 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035575 0.000000 0.000000 0.00000 SCALE2 0.000000 0.035575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018911 0.00000 ATOM 1 O5' DT A 1 18.391 7.704 23.078 1.00 18.25 O ATOM 2 C5' DT A 1 17.969 6.870 24.167 1.00 0.64 C ATOM 3 C4' DT A 1 16.603 7.426 24.363 1.00 18.66 C ATOM 4 O4' DT A 1 16.401 8.623 25.040 1.00 13.15 O ATOM 5 C3' DT A 1 15.971 7.668 22.978 1.00 18.17 C ATOM 6 O3' DT A 1 14.695 6.974 23.073 1.00 22.58 O ATOM 7 C2' DT A 1 15.710 9.191 22.909 1.00 16.25 C ATOM 8 C1' DT A 1 15.325 9.363 24.395 1.00 12.32 C ATOM 9 N1 DT A 1 15.698 10.793 24.554 1.00 9.81 N ATOM 10 C2 DT A 1 14.729 11.698 24.717 1.00 2.28 C ATOM 11 O2 DT A 1 13.559 11.434 24.802 1.00 7.67 O ATOM 12 N3 DT A 1 15.232 12.921 24.813 1.00 7.37 N ATOM 13 C4 DT A 1 16.592 13.197 24.707 1.00 2.12 C ATOM 14 O4 DT A 1 17.048 14.450 24.755 1.00 3.34 O ATOM 15 C5 DT A 1 17.545 12.210 24.495 1.00 4.98 C ATOM 16 C7 DT A 1 19.026 12.480 24.390 1.00 7.14 C ATOM 17 C6 DT A 1 17.059 10.999 24.406 1.00 6.66 C ATOM 18 P DG A 2 14.290 5.818 22.084 1.00 19.61 P ATOM 19 OP1 DG A 2 13.349 5.394 23.210 1.00 30.46 O ATOM 20 OP2 DG A 2 15.561 5.144 21.857 1.00 16.52 O ATOM 21 O5' DG A 2 13.267 6.192 20.921 1.00 14.70 O ATOM 22 C5' DG A 2 12.027 6.858 21.402 1.00 14.58 C ATOM 23 C4' DG A 2 11.516 7.640 20.212 1.00 11.30 C ATOM 24 O4' DG A 2 12.202 8.919 20.059 1.00 8.82 O ATOM 25 C3' DG A 2 11.802 6.856 18.969 1.00 10.00 C ATOM 26 O3' DG A 2 11.103 7.184 17.848 1.00 23.41 O ATOM 27 C2' DG A 2 13.250 7.465 18.678 1.00 10.18 C ATOM 28 C1' DG A 2 12.986 9.020 18.821 1.00 4.81 C ATOM 29 N9 DG A 2 14.119 9.832 18.641 1.00 7.71 N ATOM 30 C8 DG A 2 15.479 9.495 18.567 1.00 1.01 C ATOM 31 N7 DG A 2 16.311 10.543 18.419 1.00 7.53 N ATOM 32 C5 DG A 2 15.417 11.631 18.313 1.00 0.92 C ATOM 33 C6 DG A 2 15.771 12.946 18.112 1.00 4.05 C ATOM 34 O6 DG A 2 16.955 13.461 17.980 1.00 4.16 O ATOM 35 N1 DG A 2 14.568 13.697 18.134 1.00 2.53 N ATOM 36 C2 DG A 2 13.363 13.298 18.266 1.00 2.20 C ATOM 37 N2 DG A 2 12.474 14.223 18.234 1.00 4.61 N ATOM 38 N3 DG A 2 13.056 11.997 18.451 1.00 2.08 N ATOM 39 C4 DG A 2 14.141 11.201 18.477 1.00 4.59 C ATOM 40 P DA A 3 10.321 6.327 16.822 1.00 17.70 P ATOM 41 OP1 DA A 3 9.613 5.116 17.409 1.00 16.10 O ATOM 42 OP2 DA A 3 11.114 5.962 15.632 1.00 16.01 O ATOM 43 O5' DA A 3 9.366 7.494 16.357 1.00 8.41 O ATOM 44 C5' DA A 3 8.742 8.160 17.478 1.00 7.56 C ATOM 45 C4' DA A 3 8.112 9.368 16.775 1.00 10.20 C ATOM 46 O4' DA A 3 9.082 10.333 16.923 1.00 5.85 O ATOM 47 C3' DA A 3 7.817 9.186 15.278 1.00 6.37 C ATOM 48 O3' DA A 3 6.493 9.649 15.029 1.00 10.30 O ATOM 49 C2' DA A 3 9.062 9.956 14.707 1.00 19.30 C ATOM 50 C1' DA A 3 9.475 11.035 15.754 1.00 9.13 C ATOM 51 N9 DA A 3 10.889 11.314 15.579 1.00 6.82 N ATOM 52 C8 DA A 3 11.853 10.271 15.542 1.00 2.85 C ATOM 53 N7 DA A 3 13.014 10.670 15.283 1.00 2.59 N ATOM 54 C5 DA A 3 12.958 11.997 15.188 1.00 8.22 C ATOM 55 C6 DA A 3 13.899 12.972 14.908 1.00 3.34 C ATOM 56 N6 DA A 3 15.234 12.592 14.749 1.00 9.48 N ATOM 57 N1 DA A 3 13.408 14.290 14.828 1.00 3.49 N ATOM 58 C2 DA A 3 12.188 14.549 15.003 1.00 2.14 C ATOM 59 N3 DA A 3 11.122 13.753 15.278 1.00 7.59 N ATOM 60 C4 DA A 3 11.642 12.415 15.325 1.00 5.81 C ATOM 61 P DT A 4 5.523 10.220 13.924 1.00 11.44 P ATOM 62 OP1 DT A 4 4.135 10.712 14.511 1.00 18.19 O ATOM 63 OP2 DT A 4 5.459 8.913 13.178 1.00 6.50 O ATOM 64 O5' DT A 4 5.802 11.586 13.136 1.00 10.47 O ATOM 65 C5' DT A 4 5.388 12.685 13.945 1.00 5.93 C ATOM 66 C4' DT A 4 6.001 13.764 13.057 1.00 5.44 C ATOM 67 O4' DT A 4 7.291 13.413 13.041 1.00 10.37 O ATOM 68 C3' DT A 4 5.709 13.885 11.571 1.00 5.48 C ATOM 69 O3' DT A 4 5.253 15.201 11.195 1.00 10.90 O ATOM 70 C2' DT A 4 6.867 13.585 10.677 1.00 2.99 C ATOM 71 C1' DT A 4 7.851 13.739 11.729 1.00 7.60 C ATOM 72 N1 DT A 4 9.149 13.076 11.687 1.00 3.91 N ATOM 73 C2 DT A 4 10.257 13.916 11.682 1.00 6.39 C ATOM 74 O2 DT A 4 10.099 15.091 11.655 1.00 16.48 O ATOM 75 N3 DT A 4 11.460 13.363 11.671 1.00 1.77 N ATOM 76 C4 DT A 4 11.659 11.991 11.745 1.00 10.64 C ATOM 77 O4 DT A 4 12.814 11.561 11.740 1.00 9.38 O ATOM 78 C5 DT A 4 10.484 11.145 11.756 1.00 6.19 C ATOM 79 C7 DT A 4 10.768 9.658 11.782 1.00 0.63 C ATOM 80 C6 DT A 4 9.301 11.682 11.735 1.00 7.37 C ATOM 81 P DC A 5 4.255 15.212 9.916 1.00 10.29 P ATOM 82 OP1 DC A 5 3.182 16.230 9.963 1.00 22.14 O ATOM 83 OP2 DC A 5 3.491 13.939 9.958 1.00 11.03 O ATOM 84 O5' DC A 5 5.428 15.386 8.794 1.00 20.12 O ATOM 85 C5' DC A 5 6.355 16.409 9.101 1.00 6.42 C ATOM 86 C4' DC A 5 7.229 16.547 7.927 1.00 3.30 C ATOM 87 O4' DC A 5 8.497 16.022 8.387 1.00 5.96 O ATOM 88 C3' DC A 5 6.887 16.033 6.568 1.00 10.10 C ATOM 89 O3' DC A 5 7.468 16.856 5.537 1.00 13.67 O ATOM 90 C2' DC A 5 7.637 14.656 6.632 1.00 11.10 C ATOM 91 C1' DC A 5 8.871 14.976 7.493 1.00 7.85 C ATOM 92 N1 DC A 5 9.571 13.829 7.938 1.00 2.05 N ATOM 93 C2 DC A 5 10.926 14.023 8.213 1.00 3.03 C ATOM 94 O2 DC A 5 11.254 15.175 8.266 1.00 3.15 O ATOM 95 N3 DC A 5 11.800 12.930 8.419 1.00 2.03 N ATOM 96 C4 DC A 5 11.316 11.651 8.419 1.00 4.58 C ATOM 97 N4 DC A 5 12.131 10.540 8.625 1.00 4.51 N ATOM 98 C5 DC A 5 10.029 11.468 8.112 1.00 6.13 C ATOM 99 C6 DC A 5 9.211 12.528 7.853 1.00 7.79 C ATOM 100 P DA A 6 6.948 18.006 4.638 1.00 5.82 P ATOM 101 OP1 DA A 6 6.254 19.046 5.584 1.00 13.20 O ATOM 102 OP2 DA A 6 5.889 17.275 3.861 1.00 3.41 O ATOM 103 O5' DA A 6 7.879 18.911 3.797 1.00 4.90 O ATOM 104 C5' DA A 6 8.354 20.092 4.416 1.00 2.56 C ATOM 105 C4' DA A 6 9.669 20.384 3.633 1.00 12.19 C ATOM 106 O4' DA A 6 10.703 19.437 3.284 1.00 6.77 O ATOM 107 C3' DA A 6 9.290 20.865 2.237 1.00 5.71 C ATOM 108 O3' DA A 6 10.411 21.517 1.708 1.00 3.79 O ATOM 109 C2' DA A 6 9.264 19.583 1.401 1.00 7.77 C ATOM 110 C1' DA A 6 10.701 19.167 1.851 1.00 3.21 C ATOM 111 N9 DA A 6 10.709 17.730 1.703 1.00 14.71 N ATOM 112 C8 DA A 6 9.641 16.901 1.703 1.00 3.67 C ATOM 113 N7 DA A 6 9.798 15.569 1.650 1.00 0.31 N ATOM 114 C5 DA A 6 11.266 15.583 1.602 1.00 3.73 C ATOM 115 C6 DA A 6 12.174 14.509 1.507 1.00 6.47 C ATOM 116 N6 DA A 6 11.769 13.230 1.444 1.00 4.04 N ATOM 117 N1 DA A 6 13.506 14.785 1.465 1.00 2.41 N ATOM 118 C2 DA A 6 13.933 16.140 1.534 1.00 7.01 C ATOM 119 N3 DA A 6 13.126 17.303 1.629 1.00 3.43 N ATOM 120 C4 DA A 6 11.788 16.851 1.645 1.00 4.40 C TER 121 DA A 6 HETATM 122 C1 DM1 A 7 12.930 9.810 5.056 1.00 7.57 C HETATM 123 C2 DM1 A 7 11.763 9.011 5.061 1.00 5.90 C HETATM 124 C3 DM1 A 7 10.552 9.557 5.008 1.00 2.72 C HETATM 125 C4 DM1 A 7 10.414 10.973 4.966 1.00 8.96 C HETATM 126 O4 DM1 A 7 9.236 11.527 4.775 1.00 0.63 O HETATM 127 C5 DM1 A 7 11.592 11.788 4.934 1.00 11.21 C HETATM 128 C6 DM1 A 7 11.465 13.343 4.860 1.00 1.42 C HETATM 129 O6 DM1 A 7 10.403 13.885 4.802 1.00 3.31 O HETATM 130 C7 DM1 A 7 12.764 14.029 4.833 1.00 6.60 C HETATM 131 C8 DM1 A 7 12.744 15.434 4.744 1.00 3.20 C HETATM 132 O8 DM1 A 7 11.530 16.199 4.648 1.00 5.14 O HETATM 133 C9 DM1 A 7 13.942 16.196 4.733 1.00 8.08 C HETATM 134 C10 DM1 A 7 13.871 17.770 4.939 1.00 5.01 C HETATM 135 O10 DM1 A 7 13.461 18.031 6.214 1.00 14.18 O HETATM 136 C11 DM1 A 7 15.341 18.281 4.643 1.00 3.74 C HETATM 137 C12 DM1 A 7 16.370 17.626 5.479 1.00 5.86 C HETATM 138 O12 DM1 A 7 16.185 17.520 6.906 1.00 3.55 O HETATM 139 C13 DM1 A 7 17.733 18.346 5.225 1.00 10.79 C HETATM 140 O13 DM1 A 7 18.211 18.231 4.120 1.00 5.79 O HETATM 141 C14 DM1 A 7 18.613 18.697 6.383 1.00 16.98 C HETATM 142 C15 DM1 A 7 16.457 16.120 5.103 1.00 6.72 C HETATM 143 C16 DM1 A 7 15.156 15.524 4.728 1.00 3.67 C HETATM 144 C17 DM1 A 7 15.204 14.096 4.812 1.00 2.90 C HETATM 145 O17 DM1 A 7 16.381 13.438 4.807 1.00 6.02 O HETATM 146 C18 DM1 A 7 13.956 13.408 4.855 1.00 3.51 C HETATM 147 C19 DM1 A 7 14.034 11.946 4.908 1.00 2.58 C HETATM 148 O19 DM1 A 7 15.226 11.373 4.976 1.00 13.62 O HETATM 149 C20 DM1 A 7 12.809 11.167 4.945 1.00 3.66 C HETATM 150 C21 DM1 A 7 8.053 10.931 5.235 1.00 8.57 C HETATM 151 C1' DM1 A 7 12.238 18.661 6.372 1.00 5.06 C HETATM 152 C2' DM1 A 7 11.153 18.065 7.277 1.00 4.85 C HETATM 153 C3' DM1 A 7 11.741 17.851 8.673 1.00 14.18 C HETATM 154 N3' DM1 A 7 10.630 17.359 9.572 1.00 11.06 N HETATM 155 C4' DM1 A 7 12.488 19.049 9.297 1.00 22.81 C HETATM 156 O4' DM1 A 7 11.316 19.965 9.461 1.00 14.77 O HETATM 157 C5' DM1 A 7 12.899 20.041 8.139 1.00 19.49 C HETATM 158 O5' DM1 A 7 12.913 19.740 6.901 1.00 16.91 O HETATM 159 C6' DM1 A 7 14.181 20.780 8.689 1.00 21.47 C HETATM 160 O HOH A 8 0.172 15.563 9.598 1.00 45.70 O HETATM 161 O HOH A 9 19.167 16.390 25.082 1.00 20.49 O HETATM 162 O HOH A 10 12.892 23.184 8.090 1.00 18.30 O HETATM 163 O HOH A 11 6.484 8.815 10.762 1.00 33.54 O HETATM 164 O HOH A 12 18.829 7.432 20.392 1.00 16.96 O HETATM 165 O HOH A 13 14.419 19.630 1.426 1.00 8.15 O HETATM 166 O HOH A 14 4.294 22.175 4.713 1.00 16.92 O HETATM 167 O HOH A 15 16.817 18.352 25.066 1.00 13.22 O HETATM 168 O HOH A 16 19.945 14.906 18.382 1.00 20.33 O HETATM 169 O HOH A 17 15.516 -0.573 20.979 1.00 22.37 O HETATM 170 O HOH A 18 16.685 5.790 19.001 1.00 20.97 O HETATM 171 O HOH A 19 14.273 1.678 20.302 1.00 28.18 O HETATM 172 O HOH A 20 16.305 8.286 15.045 1.00 35.92 O HETATM 173 O HOH A 21 9.455 5.913 10.951 1.00 52.47 O HETATM 174 O HOH A 22 13.152 4.582 18.525 1.00 7.86 O HETATM 175 O HOH A 23 9.337 16.260 13.505 1.00 19.38 O HETATM 176 O HOH A 24 2.906 19.068 9.202 1.00 12.80 O HETATM 177 O HOH A 25 10.479 22.085 11.920 1.00 22.25 O HETATM 178 O HOH A 26 4.064 9.225 9.683 1.00 31.58 O HETATM 179 O HOH A 27 11.057 3.734 21.501 1.00 50.67 O HETATM 180 O HOH A 28 14.168 23.818 5.547 1.00 54.18 O HETATM 181 O HOH A 29 12.842 27.076 22.553 1.00 27.30 O HETATM 182 O HOH A 30 6.248 18.191 11.918 1.00 57.96 O HETATM 183 O HOH A 31 5.644 12.185 7.842 1.00 11.47 O HETATM 184 O HOH A 32 13.058 3.515 24.842 1.00 50.50 O HETATM 185 O HOH A 33 18.151 21.235 3.028 1.00 35.56 O HETATM 186 O HOH A 34 17.679 10.163 14.705 1.00 28.28 O HETATM 187 O HOH A 35 10.585 7.130 25.287 1.00 48.47 O HETATM 188 O HOH A 36 18.565 4.624 20.191 1.00 18.15 O HETATM 189 O HOH A 37 3.463 18.430 5.479 1.00 50.41 O HETATM 190 O HOH A 38 19.874 14.183 14.922 1.00 49.22 O HETATM 191 O HOH A 39 12.025 2.614 20.757 1.00 44.46 O HETATM 192 O HOH A 40 12.033 24.749 10.014 1.00 34.85 O HETATM 193 O HOH A 41 12.524 24.451 1.750 1.00 48.58 O HETATM 194 O HOH A 42 10.552 21.595 7.441 1.00 26.49 O HETATM 195 O HOH A 43 15.929 5.118 14.654 1.00 52.02 O HETATM 196 O HOH A 44 7.255 21.669 7.583 1.00 33.36 O HETATM 197 O HOH A 45 19.762 10.245 18.455 1.00 40.53 O HETATM 198 O HOH A 46 1.377 11.676 13.517 1.00 27.83 O HETATM 199 O HOH A 47 10.169 24.793 11.051 1.00 63.70 O HETATM 200 O HOH A 48 10.535 4.694 19.831 1.00 55.54 O HETATM 201 O HOH A 49 19.541 9.475 21.682 1.00 36.76 O HETATM 202 O HOH A 50 12.510 21.188 6.239 1.00 42.71 O HETATM 203 O HOH A 51 17.749 0.997 21.508 1.00 29.22 O HETATM 204 O HOH A 52 4.492 19.389 12.650 1.00 60.11 O HETATM 205 O HOH A 53 20.754 11.231 15.329 1.00 27.45 O HETATM 206 O HOH A 54 9.787 4.590 13.178 1.00 55.01 O HETATM 207 O HOH A 55 11.384 1.675 17.822 1.00 45.20 O HETATM 208 O HOH A 56 2.202 14.502 14.488 1.00 29.67 O HETATM 209 O HOH A 57 17.255 2.794 21.984 1.00 32.68 O HETATM 210 O HOH A 58 12.932 20.952 4.664 1.00 48.33 O HETATM 211 O HOH A 59 14.319 22.354 -0.311 1.00 40.45 O CONECT 122 123 149 CONECT 123 122 124 CONECT 124 123 125 CONECT 125 124 126 127 CONECT 126 125 150 CONECT 127 125 128 149 CONECT 128 127 129 130 CONECT 129 128 CONECT 130 128 131 146 CONECT 131 130 132 133 CONECT 132 131 CONECT 133 131 134 143 CONECT 134 133 135 136 CONECT 135 134 151 CONECT 136 134 137 CONECT 137 136 138 139 142 CONECT 138 137 CONECT 139 137 140 141 CONECT 140 139 CONECT 141 139 CONECT 142 137 143 CONECT 143 133 142 144 CONECT 144 143 145 146 CONECT 145 144 CONECT 146 130 144 147 CONECT 147 146 148 149 CONECT 148 147 CONECT 149 122 127 147 CONECT 150 126 CONECT 151 135 152 158 CONECT 152 151 153 CONECT 153 152 154 155 CONECT 154 153 CONECT 155 153 156 157 CONECT 156 155 CONECT 157 155 158 159 CONECT 158 151 157 CONECT 159 157 MASTER 362 0 1 0 0 0 3 6 210 1 38 1 END