data_1VTR # _entry.id 1VTR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VTR pdb_00001vtr 10.2210/pdb1vtr/pdb NDB UDD006 ? ? RCSB RCSB003048 ? ? WWPDB D_1000003048 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-13 2 'Structure model' 1 1 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VTR _pdbx_database_status.recvd_initial_deposition_date 1988-08-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Viswamitra, M.A.' 1 'Shakked, Z.' 2 'Jones, P.G.' 3 'Sheldrick, G.M.' 4 'Salisbury, S.A.' 5 'Kennard, O.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of the Deoxytetranucleotide d-pApTpApT and a Sequence-Dependent Model for Poly(dA-dT)' Biopolymers 21 513 533 1982 BIPMAA US 0006-3525 0161 ? 7066470 ? 1 'DNA Double Helical Fragment at Atomic Resolution' Nature 273 687 688 1978 NATUAS UK 0028-0836 0006 ? ? ? 2 'Crystal Structure of d(A-T)2 and Sequence Specific DNA-Protein Recognition.' Curr.Sci. 47 289 292 1978 CUSCAM II 0011-3891 0064 ? ? ? 3 'A Hypothesis on a Specific Sequence-Dependent Conformation of DNA and Its Relation to the Binding of the Lac-Repressor Protein.' J.Mol.Biol. 131 669 680 1979 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Viswamitra, M.A.' 1 ? primary 'Shakked, Z.' 2 ? primary 'Jones, P.G.' 3 ? primary 'Sheldrick, G.M.' 4 ? primary 'Salisbury, S.A.' 5 ? primary 'Kennard, O.' 6 ? 1 'Viswamitra, M.A.' 7 ? 1 'Kennard, O.' 8 ? 1 'Jones, P.G.' 9 ? 1 'Salisbury, S.A.' 10 ? 1 'Sheldrick, G.M.' 11 ? 1 'Falvello, L.' 12 ? 1 'Shakked, Z.' 13 ? 2 'Viswamitra, M.A.' 14 ? 2 'Kennard, O.' 15 ? 2 'Shakked, Z.' 16 ? 2 'Jones, P.G.' 17 ? 2 'Sheldrick, G.M.' 18 ? 2 'Salisbury, S.' 19 ? 2 'Falvello, L.' 20 ? 3 'Klug, A.' 21 ? 3 'Jack, A.' 22 ? 3 'Viswamitra, M.A.' 23 ? 3 'Kennard, O.' 24 ? 3 'Shakked, Z.' 25 ? 3 'Steitz, T.A.' 26 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*TP*AP*T)-3') ; 1189.842 1 ? ? ? ? 2 water nat water 18.015 42 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DT)(DA)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ATAT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DA n 1 4 DT n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 5 5 HOH HOH A . B 2 HOH 2 6 6 HOH HOH A . B 2 HOH 3 7 7 HOH HOH A . B 2 HOH 4 8 8 HOH HOH A . B 2 HOH 5 9 9 HOH HOH A . B 2 HOH 6 10 10 HOH HOH A . B 2 HOH 7 11 11 HOH HOH A . B 2 HOH 8 12 12 HOH HOH A . B 2 HOH 9 13 13 HOH HOH A . B 2 HOH 10 14 14 HOH HOH A . B 2 HOH 11 15 15 HOH HOH A . B 2 HOH 12 16 16 HOH HOH A . B 2 HOH 13 17 17 HOH HOH A . B 2 HOH 14 18 18 HOH HOH A . B 2 HOH 15 19 19 HOH HOH A . B 2 HOH 16 20 20 HOH HOH A . B 2 HOH 17 21 21 HOH HOH A . B 2 HOH 18 22 22 HOH HOH A . B 2 HOH 19 23 23 HOH HOH A . B 2 HOH 20 24 24 HOH HOH A . B 2 HOH 21 25 25 HOH HOH A . B 2 HOH 22 26 26 HOH HOH A . B 2 HOH 23 27 27 HOH HOH A . B 2 HOH 24 28 28 HOH HOH A . B 2 HOH 25 29 29 HOH HOH A . B 2 HOH 26 30 30 HOH HOH A . B 2 HOH 27 31 31 HOH HOH A . B 2 HOH 28 32 32 HOH HOH A . B 2 HOH 29 33 33 HOH HOH A . B 2 HOH 30 34 34 HOH HOH A . B 2 HOH 31 35 35 HOH HOH A . B 2 HOH 32 36 36 HOH HOH A . B 2 HOH 33 37 37 HOH HOH A . B 2 HOH 34 38 38 HOH HOH A . B 2 HOH 35 39 39 HOH HOH A . B 2 HOH 36 40 40 HOH HOH A . B 2 HOH 37 41 41 HOH HOH A . B 2 HOH 38 42 42 HOH HOH A . B 2 HOH 39 43 43 HOH HOH A . B 2 HOH 40 44 44 HOH HOH A . B 2 HOH 41 45 45 HOH HOH A . B 2 HOH 42 46 46 HOH HOH A . # _cell.entry_id 1VTR _cell.length_a 21.121 _cell.length_b 21.294 _cell.length_c 8.770 _cell.angle_alpha 90.00 _cell.angle_beta 97.84 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1VTR _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VTR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas 1.5250 _exptl_crystal.density_Matthews 1.64 _exptl_crystal.density_percent_sol 25.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER 1 2 3 1 2 1 NH4+ 4 5 6 1 3 2 ACETONE 7 8 9 # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'SYNTEX P21' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'SEALED TUBE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1VTR _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 1.500 _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs 2717 _reflns.number_all 4528 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.entry_id 1VTR _refine.ls_number_reflns_obs 2717 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.500 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.040 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1530000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.23 _refine.occupancy_max 1.05 _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 83 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 125 _refine_hist.d_res_high 1.040 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 1VTR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VTR _struct.title 'STRUCTURE OF THE DEOXYTETRANUCLEOTIDE D-PAPTPAPT AND A SEQUENCE-DEPENDENT MODEL FOR POLY(DA-DT)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VTR _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'U-DNA, HELIX, OPEN, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1VTR _struct_ref.pdbx_db_accession 1VTR _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VTR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 4 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1VTR _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 4 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 21.1210000000 0.0000000000 1.0000000000 0.0000000000 10.6470000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_645 -x+1,y-1/2,-z -1.0000000000 0.0000000000 0.0000000000 21.1210000000 0.0000000000 1.0000000000 0.0000000000 -10.6470000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 1 A DT 4 2_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 1 A DT 4 2_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 2 A DA 3 2_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 2 A DA 3 2_645 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C4'" A DA 1 ? ? "C3'" A DA 1 ? ? 1.413 1.521 -0.108 0.010 N 2 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? 1.520 1.420 0.100 0.011 N 3 1 "O4'" A DA 1 ? ? "C4'" A DA 1 ? ? 1.514 1.449 0.065 0.009 N 4 1 C4 A DA 1 ? ? C5 A DA 1 ? ? 1.257 1.383 -0.126 0.007 N 5 1 C5 A DA 1 ? ? C6 A DA 1 ? ? 1.508 1.406 0.102 0.009 N 6 1 C5 A DA 1 ? ? N7 A DA 1 ? ? 1.266 1.388 -0.122 0.006 N 7 1 N9 A DA 1 ? ? C4 A DA 1 ? ? 1.439 1.374 0.065 0.006 N 8 1 C6 A DA 1 ? ? N6 A DA 1 ? ? 1.242 1.335 -0.093 0.008 N 9 1 "C5'" A DT 2 ? ? "C4'" A DT 2 ? ? 1.640 1.512 0.128 0.007 N 10 1 "C4'" A DT 2 ? ? "C3'" A DT 2 ? ? 1.370 1.521 -0.151 0.010 N 11 1 "C2'" A DT 2 ? ? "C1'" A DT 2 ? ? 1.374 1.518 -0.144 0.010 N 12 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? 1.511 1.420 0.091 0.011 N 13 1 N3 A DT 2 ? ? C4 A DT 2 ? ? 1.466 1.382 0.084 0.008 N 14 1 C4 A DT 2 ? ? C5 A DT 2 ? ? 1.318 1.445 -0.127 0.009 N 15 1 C5 A DT 2 ? ? C6 A DT 2 ? ? 1.291 1.339 -0.048 0.007 N 16 1 P A DA 3 ? ? OP2 A DA 3 ? ? 1.336 1.485 -0.149 0.017 N 17 1 P A DA 3 ? ? "O5'" A DA 3 ? ? 1.528 1.593 -0.065 0.010 N 18 1 "O4'" A DA 3 ? ? "C4'" A DA 3 ? ? 1.328 1.446 -0.118 0.010 N 19 1 C2 A DA 3 ? ? N3 A DA 3 ? ? 1.427 1.331 0.096 0.009 N 20 1 C5 A DA 3 ? ? C6 A DA 3 ? ? 1.617 1.406 0.211 0.009 N 21 1 N7 A DA 3 ? ? C8 A DA 3 ? ? 1.241 1.311 -0.070 0.007 N 22 1 C8 A DA 3 ? ? N9 A DA 3 ? ? 1.274 1.373 -0.099 0.008 N 23 1 N9 A DA 3 ? ? C4 A DA 3 ? ? 1.279 1.374 -0.095 0.006 N 24 1 C6 A DA 3 ? ? N6 A DA 3 ? ? 1.409 1.335 0.074 0.008 N 25 1 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 1.573 1.512 0.061 0.007 N 26 1 "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 1.386 1.518 -0.132 0.010 N 27 1 "O4'" A DT 4 ? ? "C4'" A DT 4 ? ? 1.371 1.446 -0.075 0.010 N 28 1 "O3'" A DT 4 ? ? "C3'" A DT 4 ? ? 1.571 1.435 0.136 0.013 N 29 1 N1 A DT 4 ? ? C2 A DT 4 ? ? 1.501 1.376 0.125 0.008 N 30 1 C6 A DT 4 ? ? N1 A DT 4 ? ? 1.324 1.378 -0.054 0.007 N 31 1 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.564 1.496 0.068 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 102.67 108.00 -5.33 0.70 N 2 1 N1 A DA 1 ? ? C2 A DA 1 ? ? N3 A DA 1 ? ? 124.84 129.30 -4.46 0.50 N 3 1 N3 A DA 1 ? ? C4 A DA 1 ? ? C5 A DA 1 ? ? 137.92 126.80 11.12 0.70 N 4 1 C4 A DA 1 ? ? C5 A DA 1 ? ? C6 A DA 1 ? ? 110.71 117.00 -6.29 0.50 N 5 1 C4 A DA 1 ? ? C5 A DA 1 ? ? N7 A DA 1 ? ? 118.36 110.70 7.66 0.50 N 6 1 N7 A DA 1 ? ? C8 A DA 1 ? ? N9 A DA 1 ? ? 109.96 113.80 -3.84 0.50 N 7 1 N9 A DA 1 ? ? C4 A DA 1 ? ? C5 A DA 1 ? ? 101.82 105.80 -3.98 0.40 N 8 1 N3 A DA 1 ? ? C4 A DA 1 ? ? N9 A DA 1 ? ? 120.19 127.40 -7.21 0.80 N 9 1 "O5'" A DT 2 ? ? "C5'" A DT 2 ? ? "C4'" A DT 2 ? ? 101.04 109.40 -8.36 0.80 N 10 1 "O4'" A DT 2 ? ? "C4'" A DT 2 ? ? "C3'" A DT 2 ? ? 114.35 106.00 8.35 0.60 N 11 1 C2 A DT 2 ? ? N3 A DT 2 ? ? C4 A DT 2 ? ? 121.16 127.20 -6.04 0.60 N 12 1 N3 A DT 2 ? ? C4 A DT 2 ? ? O4 A DT 2 ? ? 104.86 119.90 -15.04 0.60 N 13 1 C5 A DT 2 ? ? C4 A DT 2 ? ? O4 A DT 2 ? ? 138.17 124.90 13.27 0.70 N 14 1 "C1'" A DA 3 ? ? "O4'" A DA 3 ? ? "C4'" A DA 3 ? ? 117.52 110.30 7.22 0.70 N 15 1 "C4'" A DA 3 ? ? "C3'" A DA 3 ? ? "C2'" A DA 3 ? ? 97.91 102.20 -4.29 0.70 N 16 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 99.15 105.90 -6.75 0.80 N 17 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 125.46 129.30 -3.84 0.50 N 18 1 C2 A DA 3 ? ? N3 A DA 3 ? ? C4 A DA 3 ? ? 116.16 110.60 5.56 0.50 N 19 1 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 111.10 117.00 -5.90 0.50 N 20 1 C4 A DA 3 ? ? C5 A DA 3 ? ? N7 A DA 3 ? ? 115.78 110.70 5.08 0.50 N 21 1 C5 A DA 3 ? ? N7 A DA 3 ? ? C8 A DA 3 ? ? 92.63 103.90 -11.27 0.50 N 22 1 N7 A DA 3 ? ? C8 A DA 3 ? ? N9 A DA 3 ? ? 123.85 113.80 10.05 0.50 N 23 1 N9 A DA 3 ? ? C4 A DA 3 ? ? C5 A DA 3 ? ? 100.88 105.80 -4.92 0.40 N 24 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 125.98 118.60 7.38 0.60 N 25 1 C5 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.92 123.70 -8.78 0.80 N 26 1 "O4'" A DT 4 ? ? "C4'" A DT 4 ? ? "C3'" A DT 4 ? ? 112.71 106.00 6.71 0.60 N 27 1 "C1'" A DT 4 ? ? "O4'" A DT 4 ? ? "C4'" A DT 4 ? ? 102.36 110.10 -7.74 1.00 N 28 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 114.16 106.80 7.36 0.50 N 29 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 98.13 108.00 -9.87 0.70 N 30 1 N1 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 118.25 123.10 -4.85 0.80 N 31 1 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 129.00 122.30 6.70 0.60 N 32 1 N3 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 113.51 119.90 -6.39 0.60 N 33 1 C5 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 132.58 124.90 7.68 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 2 ? ? 0.079 'SIDE CHAIN' 2 1 DA A 3 ? ? 0.073 'SIDE CHAIN' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL P-ATOMS' TR anisotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL P-ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' ref 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DT OP3 O N N 37 DT P P N N 38 DT OP1 O N N 39 DT OP2 O N N 40 DT "O5'" O N N 41 DT "C5'" C N N 42 DT "C4'" C N R 43 DT "O4'" O N N 44 DT "C3'" C N S 45 DT "O3'" O N N 46 DT "C2'" C N N 47 DT "C1'" C N R 48 DT N1 N N N 49 DT C2 C N N 50 DT O2 O N N 51 DT N3 N N N 52 DT C4 C N N 53 DT O4 O N N 54 DT C5 C N N 55 DT C7 C N N 56 DT C6 C N N 57 DT HOP3 H N N 58 DT HOP2 H N N 59 DT "H5'" H N N 60 DT "H5''" H N N 61 DT "H4'" H N N 62 DT "H3'" H N N 63 DT "HO3'" H N N 64 DT "H2'" H N N 65 DT "H2''" H N N 66 DT "H1'" H N N 67 DT H3 H N N 68 DT H71 H N N 69 DT H72 H N N 70 DT H73 H N N 71 DT H6 H N N 72 HOH O O N N 73 HOH H1 H N N 74 HOH H2 H N N 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DT OP3 P sing N N 39 DT OP3 HOP3 sing N N 40 DT P OP1 doub N N 41 DT P OP2 sing N N 42 DT P "O5'" sing N N 43 DT OP2 HOP2 sing N N 44 DT "O5'" "C5'" sing N N 45 DT "C5'" "C4'" sing N N 46 DT "C5'" "H5'" sing N N 47 DT "C5'" "H5''" sing N N 48 DT "C4'" "O4'" sing N N 49 DT "C4'" "C3'" sing N N 50 DT "C4'" "H4'" sing N N 51 DT "O4'" "C1'" sing N N 52 DT "C3'" "O3'" sing N N 53 DT "C3'" "C2'" sing N N 54 DT "C3'" "H3'" sing N N 55 DT "O3'" "HO3'" sing N N 56 DT "C2'" "C1'" sing N N 57 DT "C2'" "H2'" sing N N 58 DT "C2'" "H2''" sing N N 59 DT "C1'" N1 sing N N 60 DT "C1'" "H1'" sing N N 61 DT N1 C2 sing N N 62 DT N1 C6 sing N N 63 DT C2 O2 doub N N 64 DT C2 N3 sing N N 65 DT N3 C4 sing N N 66 DT N3 H3 sing N N 67 DT C4 O4 doub N N 68 DT C4 C5 sing N N 69 DT C5 C7 sing N N 70 DT C5 C6 doub N N 71 DT C7 H71 sing N N 72 DT C7 H72 sing N N 73 DT C7 H73 sing N N 74 DT C6 H6 sing N N 75 HOH O H1 sing N N 76 HOH O H2 sing N N 77 # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 A DT 4 2_645 -0.137 -0.103 -0.277 -13.392 -1.321 3.913 1 A_DA1:DT4_A A 1 ? A 4 ? 20 1 1 A DT 2 1_555 A DA 3 2_645 0.214 -0.033 -0.474 14.444 -0.111 5.799 2 A_DT2:DA3_A A 2 ? A 3 ? 20 1 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 DA _ndb_struct_na_base_pair_step.i_label_seq_id_1 1 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 A _ndb_struct_na_base_pair_step.j_label_comp_id_1 DT _ndb_struct_na_base_pair_step.j_label_seq_id_1 4 _ndb_struct_na_base_pair_step.j_symmetry_1 2_645 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 DT _ndb_struct_na_base_pair_step.i_label_seq_id_2 2 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 A _ndb_struct_na_base_pair_step.j_label_comp_id_2 DA _ndb_struct_na_base_pair_step.j_label_seq_id_2 3 _ndb_struct_na_base_pair_step.j_symmetry_2 2_645 _ndb_struct_na_base_pair_step.shift 0.204 _ndb_struct_na_base_pair_step.slide -0.659 _ndb_struct_na_base_pair_step.rise 2.730 _ndb_struct_na_base_pair_step.tilt 1.494 _ndb_struct_na_base_pair_step.roll 5.976 _ndb_struct_na_base_pair_step.twist 32.948 _ndb_struct_na_base_pair_step.x_displacement -1.948 _ndb_struct_na_base_pair_step.y_displacement -0.152 _ndb_struct_na_base_pair_step.helical_rise 2.580 _ndb_struct_na_base_pair_step.inclination 10.423 _ndb_struct_na_base_pair_step.tip -2.606 _ndb_struct_na_base_pair_step.helical_twist 33.504 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name AA_DA1DT2:DA3DT4_AA _ndb_struct_na_base_pair_step.i_auth_asym_id_1 A _ndb_struct_na_base_pair_step.i_auth_seq_id_1 1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 A _ndb_struct_na_base_pair_step.j_auth_seq_id_1 4 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 A _ndb_struct_na_base_pair_step.i_auth_seq_id_2 2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 A _ndb_struct_na_base_pair_step.j_auth_seq_id_2 3 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _atom_sites.entry_id 1VTR _atom_sites.fract_transf_matrix[1][1] 0.047346 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006519 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.046962 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.115101 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O OP3 . DA A 1 1 ? 3.259 -0.129 8.629 1.00 23.53 ? 1 DA A OP3 1 ATOM 2 P P . DA A 1 1 ? 2.191 0.685 7.629 1.00 10.00 ? 1 DA A P 1 ATOM 3 O OP1 . DA A 1 1 ? 2.484 0.186 6.310 1.00 10.74 ? 1 DA A OP1 1 ATOM 4 O OP2 . DA A 1 1 ? 0.830 0.516 8.050 1.00 15.08 ? 1 DA A OP2 1 ATOM 5 O "O5'" . DA A 1 1 ? 2.658 2.166 7.680 1.00 4.49 ? 1 DA A "O5'" 1 ATOM 6 C "C5'" . DA A 1 1 ? 2.354 3.047 8.738 1.00 4.12 ? 1 DA A "C5'" 1 ATOM 7 C "C4'" . DA A 1 1 ? 3.068 4.320 8.631 1.00 2.83 ? 1 DA A "C4'" 1 ATOM 8 O "O4'" . DA A 1 1 ? 4.478 3.930 9.021 1.00 6.47 ? 1 DA A "O4'" 1 ATOM 9 C "C3'" . DA A 1 1 ? 3.176 4.931 7.362 1.00 3.55 ? 1 DA A "C3'" 1 ATOM 10 O "O3'" . DA A 1 1 ? 2.070 5.774 7.179 1.00 5.53 ? 1 DA A "O3'" 1 ATOM 11 C "C2'" . DA A 1 1 ? 4.561 5.603 7.334 1.00 4.90 ? 1 DA A "C2'" 1 ATOM 12 C "C1'" . DA A 1 1 ? 5.484 4.688 8.171 1.00 3.71 ? 1 DA A "C1'" 1 ATOM 13 N N9 . DA A 1 1 ? 6.199 3.617 7.491 1.00 4.81 ? 1 DA A N9 1 ATOM 14 C C8 . DA A 1 1 ? 6.034 2.243 7.467 1.00 3.17 ? 1 DA A C8 1 ATOM 15 N N7 . DA A 1 1 ? 6.955 1.707 6.772 1.00 4.74 ? 1 DA A N7 1 ATOM 16 C C5 . DA A 1 1 ? 7.717 2.653 6.415 1.00 3.49 ? 1 DA A C5 1 ATOM 17 C C6 . DA A 1 1 ? 8.920 2.646 5.506 1.00 3.02 ? 1 DA A C6 1 ATOM 18 N N6 . DA A 1 1 ? 9.459 1.603 5.100 1.00 7.51 ? 1 DA A N6 1 ATOM 19 N N1 . DA A 1 1 ? 9.483 3.844 5.229 1.00 4.27 ? 1 DA A N1 1 ATOM 20 C C2 . DA A 1 1 ? 8.966 4.977 5.732 1.00 5.28 ? 1 DA A C2 1 ATOM 21 N N3 . DA A 1 1 ? 7.776 5.062 6.412 1.00 5.53 ? 1 DA A N3 1 ATOM 22 C C4 . DA A 1 1 ? 7.378 3.831 6.695 1.00 2.45 ? 1 DA A C4 1 ATOM 23 P P . DT A 1 2 ? 1.409 6.055 5.794 1.00 10.00 ? 2 DT A P 1 ATOM 24 O OP1 . DT A 1 2 ? 0.197 6.858 6.174 1.00 8.83 ? 2 DT A OP1 1 ATOM 25 O OP2 . DT A 1 2 ? 1.178 4.816 5.044 1.00 5.12 ? 2 DT A OP2 1 ATOM 26 O "O5'" . DT A 1 2 ? 2.484 6.857 4.951 1.00 3.80 ? 2 DT A "O5'" 1 ATOM 27 C "C5'" . DT A 1 2 ? 2.878 8.252 5.414 1.00 7.67 ? 2 DT A "C5'" 1 ATOM 28 C "C4'" . DT A 1 2 ? 4.070 8.612 4.347 1.00 3.39 ? 2 DT A "C4'" 1 ATOM 29 O "O4'" . DT A 1 2 ? 5.074 7.644 4.510 1.00 4.18 ? 2 DT A "O4'" 1 ATOM 30 C "C3'" . DT A 1 2 ? 3.629 8.757 3.058 1.00 3.96 ? 2 DT A "C3'" 1 ATOM 31 O "O3'" . DT A 1 2 ? 4.213 9.919 2.495 1.00 3.71 ? 2 DT A "O3'" 1 ATOM 32 C "C2'" . DT A 1 2 ? 4.185 7.460 2.449 1.00 7.67 ? 2 DT A "C2'" 1 ATOM 33 C "C1'" . DT A 1 2 ? 5.355 7.163 3.105 1.00 3.86 ? 2 DT A "C1'" 1 ATOM 34 N N1 . DT A 1 2 ? 5.783 5.823 3.238 1.00 3.71 ? 2 DT A N1 1 ATOM 35 C C2 . DT A 1 2 ? 7.066 5.475 2.865 1.00 4.43 ? 2 DT A C2 1 ATOM 36 O O2 . DT A 1 2 ? 7.848 6.326 2.438 1.00 5.59 ? 2 DT A O2 1 ATOM 37 N N3 . DT A 1 2 ? 7.364 4.153 2.850 1.00 4.02 ? 2 DT A N3 1 ATOM 38 C C4 . DT A 1 2 ? 6.365 3.146 3.220 1.00 5.28 ? 2 DT A C4 1 ATOM 39 O O4 . DT A 1 2 ? 6.925 2.023 2.975 1.00 5.22 ? 2 DT A O4 1 ATOM 40 C C5 . DT A 1 2 ? 5.209 3.589 3.672 1.00 4.90 ? 2 DT A C5 1 ATOM 41 C C7 . DT A 1 2 ? 4.199 2.557 4.089 1.00 4.74 ? 2 DT A C7 1 ATOM 42 C C6 . DT A 1 2 ? 4.917 4.847 3.665 1.00 2.04 ? 2 DT A C6 1 ATOM 43 P P . DA A 1 3 ? 3.627 10.714 1.313 1.00 10.00 ? 3 DA A P 1 ATOM 44 O OP1 . DA A 1 3 ? 2.193 10.998 1.563 1.00 5.43 ? 3 DA A OP1 1 ATOM 45 O OP2 . DA A 1 3 ? 3.975 10.159 0.149 1.00 8.77 ? 3 DA A OP2 1 ATOM 46 O "O5'" . DA A 1 3 ? 4.482 11.980 1.363 1.00 4.43 ? 3 DA A "O5'" 1 ATOM 47 C "C5'" . DA A 1 3 ? 4.212 12.990 2.478 1.00 4.74 ? 3 DA A "C5'" 1 ATOM 48 C "C4'" . DA A 1 3 ? 5.097 14.207 2.156 1.00 4.34 ? 3 DA A "C4'" 1 ATOM 49 O "O4'" . DA A 1 3 ? 6.385 13.979 2.386 1.00 4.59 ? 3 DA A "O4'" 1 ATOM 50 C "C3'" . DA A 1 3 ? 5.031 14.784 0.693 1.00 2.04 ? 3 DA A "C3'" 1 ATOM 51 O "O3'" . DA A 1 3 ? 3.863 15.611 0.591 1.00 5.28 ? 3 DA A "O3'" 1 ATOM 52 C "C2'" . DA A 1 3 ? 6.378 15.455 0.674 1.00 6.31 ? 3 DA A "C2'" 1 ATOM 53 C "C1'" . DA A 1 3 ? 7.343 14.669 1.556 1.00 3.39 ? 3 DA A "C1'" 1 ATOM 54 N N9 . DA A 1 3 ? 8.079 13.722 0.772 1.00 5.12 ? 3 DA A N9 1 ATOM 55 C C8 . DA A 1 3 ? 8.145 12.451 0.829 1.00 4.02 ? 3 DA A C8 1 ATOM 56 N N7 . DA A 1 3 ? 8.963 11.772 0.189 1.00 3.64 ? 3 DA A N7 1 ATOM 57 C C5 . DA A 1 3 ? 9.603 12.897 -0.310 1.00 5.28 ? 3 DA A C5 1 ATOM 58 C C6 . DA A 1 3 ? 11.028 13.082 -1.051 1.00 5.37 ? 3 DA A C6 1 ATOM 59 N N6 . DA A 1 3 ? 11.616 11.888 -1.514 1.00 6.88 ? 3 DA A N6 1 ATOM 60 N N1 . DA A 1 3 ? 11.403 14.362 -1.407 1.00 2.83 ? 3 DA A N1 1 ATOM 61 C C2 . DA A 1 3 ? 10.705 15.378 -1.012 1.00 3.24 ? 3 DA A C2 1 ATOM 62 N N3 . DA A 1 3 ? 9.547 15.314 -0.181 1.00 5.37 ? 3 DA A N3 1 ATOM 63 C C4 . DA A 1 3 ? 9.108 14.102 0.115 1.00 4.59 ? 3 DA A C4 1 ATOM 64 P P . DT A 1 4 ? 3.053 15.758 -0.708 1.00 10.00 ? 4 DT A P 1 ATOM 65 O OP1 . DT A 1 4 ? 1.867 16.520 -0.327 1.00 10.02 ? 4 DT A OP1 1 ATOM 66 O OP2 . DT A 1 4 ? 2.957 14.450 -1.477 1.00 7.98 ? 4 DT A OP2 1 ATOM 67 O "O5'" . DT A 1 4 ? 3.967 16.663 -1.555 1.00 6.41 ? 4 DT A "O5'" 1 ATOM 68 C "C5'" . DT A 1 4 ? 4.321 17.930 -1.112 1.00 6.72 ? 4 DT A "C5'" 1 ATOM 69 C "C4'" . DT A 1 4 ? 5.452 18.570 -1.999 1.00 5.12 ? 4 DT A "C4'" 1 ATOM 70 O "O4'" . DT A 1 4 ? 6.617 17.848 -2.019 1.00 6.72 ? 4 DT A "O4'" 1 ATOM 71 C "C3'" . DT A 1 4 ? 4.830 18.730 -3.393 1.00 7.89 ? 4 DT A "C3'" 1 ATOM 72 O "O3'" . DT A 1 4 ? 5.255 20.124 -3.981 1.00 9.64 ? 4 DT A "O3'" 1 ATOM 73 C "C2'" . DT A 1 4 ? 5.628 17.620 -4.163 1.00 3.71 ? 4 DT A "C2'" 1 ATOM 74 C "C1'" . DT A 1 4 ? 6.801 17.599 -3.425 1.00 5.59 ? 4 DT A "C1'" 1 ATOM 75 N N1 . DT A 1 4 ? 7.403 16.186 -3.319 1.00 5.22 ? 4 DT A N1 1 ATOM 76 C C2 . DT A 1 4 ? 8.786 15.982 -3.866 1.00 3.96 ? 4 DT A C2 1 ATOM 77 O O2 . DT A 1 4 ? 9.411 16.968 -4.250 1.00 5.28 ? 4 DT A O2 1 ATOM 78 N N3 . DT A 1 4 ? 9.148 14.697 -3.887 1.00 4.27 ? 4 DT A N3 1 ATOM 79 C C4 . DT A 1 4 ? 8.453 13.592 -3.498 1.00 3.39 ? 4 DT A C4 1 ATOM 80 O O4 . DT A 1 4 ? 9.070 12.579 -3.609 1.00 6.31 ? 4 DT A O4 1 ATOM 81 C C5 . DT A 1 4 ? 7.148 13.879 -2.990 1.00 3.55 ? 4 DT A C5 1 ATOM 82 C C7 . DT A 1 4 ? 6.314 12.660 -2.476 1.00 5.43 ? 4 DT A C7 1 ATOM 83 C C6 . DT A 1 4 ? 6.679 15.118 -3.022 1.00 2.61 ? 4 DT A C6 1 HETATM 84 O O . HOH B 2 . ? 1.618 4.563 2.348 0.97 11.84 ? 5 HOH A O 1 HETATM 85 O O . HOH B 2 . ? 1.995 14.697 4.377 1.00 11.84 ? 6 HOH A O 1 HETATM 86 O O . HOH B 2 . ? -0.976 8.863 3.821 0.65 11.84 ? 7 HOH A O 1 HETATM 87 O O . HOH B 2 . ? -1.840 12.595 3.898 0.58 11.84 ? 8 HOH A O 1 HETATM 88 O O . HOH B 2 . ? 7.087 10.336 3.127 0.37 11.84 ? 9 HOH A O 1 HETATM 89 O O . HOH B 2 . ? 3.027 11.637 -2.092 0.77 11.84 ? 10 HOH A O 1 HETATM 90 O O . HOH B 2 . ? 8.679 17.996 0.445 0.56 11.84 ? 11 HOH A O 1 HETATM 91 O O . HOH B 2 . ? 0.784 10.964 4.169 0.47 11.84 ? 12 HOH A O 1 HETATM 92 O O . HOH B 2 . ? 6.451 8.980 -0.036 0.76 11.84 ? 13 HOH A O 1 HETATM 93 O O . HOH B 2 . ? 0.823 12.023 3.962 0.43 11.84 ? 14 HOH A O 1 HETATM 94 O O . HOH B 2 . ? 7.161 9.944 4.506 0.62 11.84 ? 15 HOH A O 1 HETATM 95 O O . HOH B 2 . ? 12.019 9.459 2.520 0.38 11.84 ? 16 HOH A O 1 HETATM 96 O O . HOH B 2 . ? 1.400 16.799 2.456 0.49 11.84 ? 17 HOH A O 1 HETATM 97 O O . HOH B 2 . ? 1.903 11.886 -1.493 0.41 11.84 ? 18 HOH A O 1 HETATM 98 O O . HOH B 2 . ? 8.429 8.143 -1.743 0.69 11.84 ? 19 HOH A O 1 HETATM 99 O O . HOH B 2 . ? 8.765 7.266 -0.963 0.42 11.84 ? 20 HOH A O 1 HETATM 100 O O . HOH B 2 . ? 1.231 -1.373 10.721 0.61 11.84 ? 21 HOH A O 1 HETATM 101 O O . HOH B 2 . ? 1.283 15.170 2.557 0.35 11.84 ? 22 HOH A O 1 HETATM 102 O O . HOH B 2 . ? 0.344 13.637 -1.612 0.54 11.84 ? 23 HOH A O 1 HETATM 103 O O . HOH B 2 . ? 13.862 7.936 -2.069 0.49 11.84 ? 24 HOH A O 1 HETATM 104 O O . HOH B 2 . ? 0.120 8.707 8.060 0.64 11.84 ? 25 HOH A O 1 HETATM 105 O O . HOH B 2 . ? -0.348 17.582 -1.199 0.61 11.84 ? 26 HOH A O 1 HETATM 106 O O . HOH B 2 . ? 5.551 -0.388 2.051 0.44 11.84 ? 27 HOH A O 1 HETATM 107 O O . HOH B 2 . ? 8.734 9.097 1.672 0.49 11.84 ? 28 HOH A O 1 HETATM 108 O O . HOH B 2 . ? 0.810 1.657 1.910 0.37 11.84 ? 29 HOH A O 1 HETATM 109 O O . HOH B 2 . ? 11.913 9.101 -5.007 0.29 11.84 ? 30 HOH A O 1 HETATM 110 O O . HOH B 2 . ? 9.927 7.738 3.005 0.31 11.84 ? 31 HOH A O 1 HETATM 111 O O . HOH B 2 . ? 9.266 8.950 3.819 0.30 11.84 ? 32 HOH A O 1 HETATM 112 O O . HOH B 2 . ? 9.843 9.146 0.790 0.39 11.84 ? 33 HOH A O 1 HETATM 113 O O . HOH B 2 . ? -0.329 9.636 5.610 0.37 11.84 ? 34 HOH A O 1 HETATM 114 O O . HOH B 2 . ? 6.778 -0.973 6.336 0.34 11.84 ? 35 HOH A O 1 HETATM 115 O O . HOH B 2 . ? 9.653 18.905 2.922 0.32 11.84 ? 36 HOH A O 1 HETATM 116 O O . HOH B 2 . ? -1.387 1.063 9.306 0.23 11.84 ? 37 HOH A O 1 HETATM 117 O O . HOH B 2 . ? 11.275 9.695 0.484 0.30 11.84 ? 38 HOH A O 1 HETATM 118 O O . HOH B 2 . ? 5.636 -0.649 12.990 0.57 11.84 ? 39 HOH A O 1 HETATM 119 O O . HOH B 2 . ? 6.689 9.486 -0.917 0.36 11.84 ? 40 HOH A O 1 HETATM 120 O O . HOH B 2 . ? -0.442 15.180 0.571 0.28 11.84 ? 41 HOH A O 1 HETATM 121 O O . HOH B 2 . ? 10.848 9.037 -2.149 0.37 11.84 ? 42 HOH A O 1 HETATM 122 O O . HOH B 2 . ? 0.418 13.045 0.740 0.46 11.84 ? 43 HOH A O 1 HETATM 123 O O . HOH B 2 . ? 0.268 14.007 2.069 0.28 11.84 ? 44 HOH A O 1 HETATM 124 O O . HOH B 2 . ? 1.084 -0.068 4.354 0.33 11.84 ? 45 HOH A O 1 HETATM 125 O O . HOH B 2 . ? 0.663 13.445 -5.336 0.37 11.84 ? 46 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 2 P P . DA A 1 ? 1.1100 0.7600 0.9600 0.0300 0.2800 -0.1400 1 DA A P 23 P P . DT A 2 ? 0.4900 0.9000 0.5900 -0.1300 0.2400 0.0900 2 DT A P 43 P P . DA A 3 ? 0.9200 0.5500 0.5800 0.0600 -0.0100 -0.0100 3 DA A P 64 P P . DT A 4 ? 0.6500 1.2100 1.2900 0.3700 0.5800 0.5600 4 DT A P #