data_1VTS # _entry.id 1VTS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1VTS NDB ZDD023 RCSB RCSB003049 WWPDB D_1000003049 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.pdb_id NONE _pdbx_database_PDB_obs_spr.replace_pdb_id 1VTS _pdbx_database_PDB_obs_spr.date 2013-03-06 _pdbx_database_PDB_obs_spr.details 'Obsolete due to administrative error at PDB' # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1VTS _pdbx_database_status.recvd_initial_deposition_date 1991-05-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Crawford, J.L.' 1 'Kolpak, F.J.' 2 'Wang, A.H.-J.' 3 'Quigley, G.J.' 4 'Van Boom, J.H.' 5 'Van Der Marel, G.A.' 6 'Rich, A.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The Tetramer d(CpGpCpG) Crystallizes as a Left-Handed Double Helix' Proc.Natl.Acad.Sci.USA 77 4016 4020 1980 PNASA6 US 0027-8424 0040 ? 6933447 ? 1 'High-Salt d(CpGpCpG), a Left-Handed Z-DNA Double Helix' Nature 286 567 573 1980 NATUAS UK 0028-0836 0006 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Crawford, J.L.' 1 primary 'Kolpak, F.J.' 2 primary 'Wang, A.H.-J.' 3 primary 'Quigley, G.J.' 4 primary 'Van Boom, J.H.' 5 primary 'Van Der Marel, G.A.' 6 primary 'Rich, A.' 7 1 'Drew, H.R.' 8 1 'Takano, T.' 9 1 'Tanaka, S.' 10 1 'Itakura, A.' 11 1 'Dickerson, R.E.' 12 # _cell.entry_id 1VTS _cell.length_a 30.920 _cell.length_b 30.920 _cell.length_c 43.290 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1VTS _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*CP*GP*CP*G)-3') ; _entity.formula_weight 1191.818 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1VTS _struct_ref.pdbx_db_accession 1VTS _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code CGCG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VTS A 1 ? 4 ? 1VTS 1 ? 4 ? 1 4 2 1 1VTS B 1 ? 4 ? 1VTS 1 ? 4 ? 1 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 # _exptl.entry_id 1VTS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.92 _exptl_crystal.density_Matthews 2.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER 1 2 3 1 2 1 ISOPROPANOL 4 5 6 1 3 1 'NA CACODYLATE' 7 8 9 1 4 1 MGCL2 10 11 12 1 5 2 WATER 13 14 15 1 6 2 ISOPROPANOL 16 17 18 # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type PICKER _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1VTS _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.1186000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.entry_id 1VTS _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2100000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 158 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 158 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low . # _struct.entry_id 1VTS _struct.title 'The Tetramer d(CpGpCpG) Crystallizes as a Left-Handed Double Helix' _struct.pdbx_descriptor "5'-D(*CP*GP*CP*G)-3'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VTS _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 1 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 1 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 1 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 2 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 2 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 2 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 3 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 3 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 3 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 4 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 4 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 4 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1VTS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1VTS _atom_sites.fract_transf_matrix[1][1] 0.032342 _atom_sites.fract_transf_matrix[1][2] 0.018672 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.037345 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023100 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 15.070 -10.940 15.986 1.00 10.00 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 15.727 -12.087 15.402 1.00 10.00 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 15.354 -12.080 13.941 1.00 10.00 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 16.563 -11.874 13.189 1.00 10.00 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 14.641 -13.299 13.365 1.00 10.00 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 13.559 -12.964 12.485 1.00 10.00 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 15.805 -13.998 12.670 1.00 10.00 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 16.563 -12.812 12.113 1.00 10.00 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 17.973 -13.179 11.778 1.00 10.00 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 18.211 -13.859 10.610 1.00 10.00 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 17.268 -14.095 9.867 1.00 10.00 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 19.444 -14.247 10.286 1.00 10.00 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 20.466 -13.997 11.104 1.00 10.00 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 21.727 -14.340 10.709 1.00 10.00 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 20.268 -13.340 12.328 1.00 10.00 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 18.980 -12.927 12.665 1.00 10.00 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? 12.150 -12.502 13.056 1.00 10.00 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? 11.800 -13.304 14.262 1.00 10.00 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? 11.189 -12.633 11.952 1.00 10.00 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? 12.336 -10.963 13.505 1.00 10.00 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? 12.185 -9.836 12.591 1.00 10.00 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? 12.186 -8.588 13.454 1.00 10.00 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? 13.332 -8.827 14.269 1.00 10.00 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? 12.405 -7.230 12.754 1.00 10.00 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? 11.277 -6.306 12.822 1.00 10.00 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? 13.665 -6.671 13.414 1.00 10.00 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? 13.936 -7.585 14.599 1.00 10.00 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? 15.396 -7.910 14.631 1.00 10.00 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? 16.265 -7.919 15.693 1.00 10.00 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? 17.517 -8.272 15.336 1.00 10.00 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? 17.428 -8.491 14.007 1.00 10.00 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? 18.441 -8.861 13.062 1.00 10.00 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? 19.651 -9.020 13.242 1.00 10.00 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? 17.913 -9.054 11.810 1.00 10.00 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? 16.608 -8.922 11.437 1.00 10.00 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? 16.308 -9.130 10.124 1.00 10.00 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? 15.670 -8.516 12.296 1.00 10.00 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? 16.149 -8.324 13.557 1.00 10.00 ? 2 DG A C4 1 ATOM 39 P P . DC A 1 3 ? 10.593 -5.795 11.471 1.00 10.00 ? 3 DC A P 1 ATOM 40 O OP1 . DC A 1 3 ? 9.485 -4.863 11.637 1.00 10.00 ? 3 DC A OP1 1 ATOM 41 O OP2 . DC A 1 3 ? 10.158 -7.023 10.708 1.00 10.00 ? 3 DC A OP2 1 ATOM 42 O "O5'" . DC A 1 3 ? 11.760 -5.110 10.624 1.00 10.00 ? 3 DC A "O5'" 1 ATOM 43 C "C5'" . DC A 1 3 ? 11.476 -4.574 9.304 1.00 10.00 ? 3 DC A "C5'" 1 ATOM 44 C "C4'" . DC A 1 3 ? 12.764 -4.582 8.509 1.00 10.00 ? 3 DC A "C4'" 1 ATOM 45 O "O4'" . DC A 1 3 ? 13.817 -4.468 9.478 1.00 10.00 ? 3 DC A "O4'" 1 ATOM 46 C "C3'" . DC A 1 3 ? 13.144 -5.875 7.735 1.00 10.00 ? 3 DC A "C3'" 1 ATOM 47 O "O3'" . DC A 1 3 ? 13.651 -5.683 6.414 1.00 10.00 ? 3 DC A "O3'" 1 ATOM 48 C "C2'" . DC A 1 3 ? 14.209 -6.491 8.619 1.00 10.00 ? 3 DC A "C2'" 1 ATOM 49 C "C1'" . DC A 1 3 ? 14.910 -5.193 8.927 1.00 10.00 ? 3 DC A "C1'" 1 ATOM 50 N N1 . DC A 1 3 ? 15.893 -5.338 9.994 1.00 10.00 ? 3 DC A N1 1 ATOM 51 C C2 . DC A 1 3 ? 17.068 -5.960 9.702 1.00 10.00 ? 3 DC A C2 1 ATOM 52 O O2 . DC A 1 3 ? 17.242 -6.384 8.545 1.00 10.00 ? 3 DC A O2 1 ATOM 53 N N3 . DC A 1 3 ? 18.004 -6.067 10.645 1.00 10.00 ? 3 DC A N3 1 ATOM 54 C C4 . DC A 1 3 ? 17.800 -5.555 11.860 1.00 10.00 ? 3 DC A C4 1 ATOM 55 N N4 . DC A 1 3 ? 18.788 -5.648 12.792 1.00 10.00 ? 3 DC A N4 1 ATOM 56 C C5 . DC A 1 3 ? 16.605 -4.913 12.196 1.00 10.00 ? 3 DC A C5 1 ATOM 57 C C6 . DC A 1 3 ? 15.628 -4.805 11.219 1.00 10.00 ? 3 DC A C6 1 ATOM 58 P P . DG A 1 4 ? 12.664 -5.862 5.182 1.00 10.00 ? 4 DG A P 1 ATOM 59 O OP1 . DG A 1 4 ? 11.585 -6.795 5.595 1.00 10.00 ? 4 DG A OP1 1 ATOM 60 O OP2 . DG A 1 4 ? 13.513 -6.246 4.021 1.00 10.00 ? 4 DG A OP2 1 ATOM 61 O "O5'" . DG A 1 4 ? 11.997 -4.414 5.014 1.00 10.00 ? 4 DG A "O5'" 1 ATOM 62 C "C5'" . DG A 1 4 ? 12.701 -3.194 5.138 1.00 10.00 ? 4 DG A "C5'" 1 ATOM 63 C "C4'" . DG A 1 4 ? 11.627 -2.135 5.241 1.00 10.00 ? 4 DG A "C4'" 1 ATOM 64 O "O4'" . DG A 1 4 ? 10.945 -2.131 6.520 1.00 10.00 ? 4 DG A "O4'" 1 ATOM 65 C "C3'" . DG A 1 4 ? 12.052 -0.718 4.929 1.00 10.00 ? 4 DG A "C3'" 1 ATOM 66 O "O3'" . DG A 1 4 ? 11.618 -0.317 3.629 1.00 10.00 ? 4 DG A "O3'" 1 ATOM 67 C "C2'" . DG A 1 4 ? 11.395 0.142 5.986 1.00 10.00 ? 4 DG A "C2'" 1 ATOM 68 C "C1'" . DG A 1 4 ? 10.917 -0.809 7.080 1.00 10.00 ? 4 DG A "C1'" 1 ATOM 69 N N9 . DG A 1 4 ? 11.707 -0.827 8.368 1.00 10.00 ? 4 DG A N9 1 ATOM 70 C C8 . DG A 1 4 ? 11.230 -0.752 9.651 1.00 10.00 ? 4 DG A C8 1 ATOM 71 N N7 . DG A 1 4 ? 12.183 -0.934 10.581 1.00 10.00 ? 4 DG A N7 1 ATOM 72 C C5 . DG A 1 4 ? 13.296 -1.139 9.856 1.00 10.00 ? 4 DG A C5 1 ATOM 73 C C6 . DG A 1 4 ? 14.626 -1.415 10.290 1.00 10.00 ? 4 DG A C6 1 ATOM 74 O O6 . DG A 1 4 ? 15.056 -1.477 11.436 1.00 10.00 ? 4 DG A O6 1 ATOM 75 N N1 . DG A 1 4 ? 15.470 -1.649 9.224 1.00 10.00 ? 4 DG A N1 1 ATOM 76 C C2 . DG A 1 4 ? 15.137 -1.615 7.908 1.00 10.00 ? 4 DG A C2 1 ATOM 77 N N2 . DG A 1 4 ? 16.103 -1.893 6.987 1.00 10.00 ? 4 DG A N2 1 ATOM 78 N N3 . DG A 1 4 ? 13.899 -1.308 7.511 1.00 10.00 ? 4 DG A N3 1 ATOM 79 C C4 . DG A 1 4 ? 13.046 -1.071 8.520 1.00 10.00 ? 4 DG A C4 1 ATOM 80 O "O5'" . DC B 1 1 ? 24.850 -3.043 9.263 1.00 10.00 ? 1 DC B "O5'" 1 ATOM 81 C "C5'" . DC B 1 1 ? 24.419 -4.371 8.969 1.00 10.00 ? 1 DC B "C5'" 1 ATOM 82 C "C4'" . DC B 1 1 ? 23.275 -4.306 7.986 1.00 10.00 ? 1 DC B "C4'" 1 ATOM 83 O "O4'" . DC B 1 1 ? 22.002 -4.430 8.638 1.00 10.00 ? 1 DC B "O4'" 1 ATOM 84 C "C3'" . DC B 1 1 ? 23.153 -3.124 7.036 1.00 10.00 ? 1 DC B "C3'" 1 ATOM 85 O "O3'" . DC B 1 1 ? 22.749 -3.606 5.758 1.00 10.00 ? 1 DC B "O3'" 1 ATOM 86 C "C2'" . DC B 1 1 ? 22.070 -2.305 7.711 1.00 10.00 ? 1 DC B "C2'" 1 ATOM 87 C "C1'" . DC B 1 1 ? 21.129 -3.432 8.128 1.00 10.00 ? 1 DC B "C1'" 1 ATOM 88 N N1 . DC B 1 1 ? 20.256 -3.037 9.270 1.00 10.00 ? 1 DC B N1 1 ATOM 89 C C2 . DC B 1 1 ? 18.963 -2.687 9.018 1.00 10.00 ? 1 DC B C2 1 ATOM 90 O O2 . DC B 1 1 ? 18.560 -2.717 7.865 1.00 10.00 ? 1 DC B O2 1 ATOM 91 N N3 . DC B 1 1 ? 18.146 -2.352 10.022 1.00 10.00 ? 1 DC B N3 1 ATOM 92 C C4 . DC B 1 1 ? 18.586 -2.346 11.277 1.00 10.00 ? 1 DC B C4 1 ATOM 93 N N4 . DC B 1 1 ? 17.736 -2.008 12.280 1.00 10.00 ? 1 DC B N4 1 ATOM 94 C C5 . DC B 1 1 ? 19.900 -2.696 11.588 1.00 10.00 ? 1 DC B C5 1 ATOM 95 C C6 . DC B 1 1 ? 20.750 -3.047 10.543 1.00 10.00 ? 1 DC B C6 1 ATOM 96 P P . DG B 1 2 ? 23.839 -3.980 4.653 1.00 10.00 ? 2 DG B P 1 ATOM 97 O OP1 . DG B 1 2 ? 24.819 -2.888 4.482 1.00 10.00 ? 2 DG B OP1 1 ATOM 98 O OP2 . DG B 1 2 ? 23.140 -4.242 3.404 1.00 10.00 ? 2 DG B OP2 1 ATOM 99 O "O5'" . DG B 1 2 ? 24.554 -5.328 5.132 1.00 10.00 ? 2 DG B "O5'" 1 ATOM 100 C "C5'" . DG B 1 2 ? 23.840 -6.581 4.976 1.00 10.00 ? 2 DG B "C5'" 1 ATOM 101 C "C4'" . DG B 1 2 ? 24.741 -7.713 5.366 1.00 10.00 ? 2 DG B "C4'" 1 ATOM 102 O "O4'" . DG B 1 2 ? 25.110 -7.503 6.734 1.00 10.00 ? 2 DG B "O4'" 1 ATOM 103 C "C3'" . DG B 1 2 ? 24.047 -9.056 5.250 1.00 10.00 ? 2 DG B "C3'" 1 ATOM 104 O "O3'" . DG B 1 2 ? 24.703 -9.931 4.330 1.00 10.00 ? 2 DG B "O3'" 1 ATOM 105 C "C2'" . DG B 1 2 ? 24.026 -9.587 6.677 1.00 10.00 ? 2 DG B "C2'" 1 ATOM 106 C "C1'" . DG B 1 2 ? 24.938 -8.701 7.489 1.00 10.00 ? 2 DG B "C1'" 1 ATOM 107 N N9 . DG B 1 2 ? 24.293 -8.226 8.735 1.00 10.00 ? 2 DG B N9 1 ATOM 108 C C8 . DG B 1 2 ? 24.893 -8.057 9.948 1.00 10.00 ? 2 DG B C8 1 ATOM 109 N N7 . DG B 1 2 ? 24.057 -7.606 10.893 1.00 10.00 ? 2 DG B N7 1 ATOM 110 C C5 . DG B 1 2 ? 22.879 -7.470 10.254 1.00 10.00 ? 2 DG B C5 1 ATOM 111 C C6 . DG B 1 2 ? 21.625 -7.023 10.776 1.00 10.00 ? 2 DG B C6 1 ATOM 112 O O6 . DG B 1 2 ? 21.368 -6.661 11.915 1.00 10.00 ? 2 DG B O6 1 ATOM 113 N N1 . DG B 1 2 ? 20.652 -6.971 9.808 1.00 10.00 ? 2 DG B N1 1 ATOM 114 C C2 . DG B 1 2 ? 20.807 -7.299 8.497 1.00 10.00 ? 2 DG B C2 1 ATOM 115 N N2 . DG B 1 2 ? 19.740 -7.116 7.673 1.00 10.00 ? 2 DG B N2 1 ATOM 116 N N3 . DG B 1 2 ? 21.978 -7.732 8.009 1.00 10.00 ? 2 DG B N3 1 ATOM 117 C C4 . DG B 1 2 ? 22.976 -7.817 8.934 1.00 10.00 ? 2 DG B C4 1 ATOM 118 P P . DC B 1 3 ? 24.160 -11.412 4.006 1.00 10.00 ? 3 DC B P 1 ATOM 119 O OP1 . DC B 1 3 ? 24.749 -12.428 4.913 1.00 10.00 ? 3 DC B OP1 1 ATOM 120 O OP2 . DC B 1 3 ? 24.392 -11.606 2.569 1.00 10.00 ? 3 DC B OP2 1 ATOM 121 O "O5'" . DC B 1 3 ? 22.584 -11.363 4.344 1.00 10.00 ? 3 DC B "O5'" 1 ATOM 122 C "C5'" . DC B 1 3 ? 21.783 -12.539 4.038 1.00 10.00 ? 3 DC B "C5'" 1 ATOM 123 C "C4'" . DC B 1 3 ? 20.321 -12.334 4.368 1.00 10.00 ? 3 DC B "C4'" 1 ATOM 124 O "O4'" . DC B 1 3 ? 20.172 -12.615 5.774 1.00 10.00 ? 3 DC B "O4'" 1 ATOM 125 C "C3'" . DC B 1 3 ? 19.657 -10.966 4.082 1.00 10.00 ? 3 DC B "C3'" 1 ATOM 126 O "O3'" . DC B 1 3 ? 18.251 -11.067 3.730 1.00 10.00 ? 3 DC B "O3'" 1 ATOM 127 C "C2'" . DC B 1 3 ? 19.834 -10.334 5.454 1.00 10.00 ? 3 DC B "C2'" 1 ATOM 128 C "C1'" . DC B 1 3 ? 19.502 -11.519 6.356 1.00 10.00 ? 3 DC B "C1'" 1 ATOM 129 N N1 . DC B 1 3 ? 20.025 -11.338 7.735 1.00 10.00 ? 3 DC B N1 1 ATOM 130 C C2 . DC B 1 3 ? 19.161 -10.826 8.646 1.00 10.00 ? 3 DC B C2 1 ATOM 131 O O2 . DC B 1 3 ? 17.995 -10.617 8.271 1.00 10.00 ? 3 DC B O2 1 ATOM 132 N N3 . DC B 1 3 ? 19.594 -10.498 9.871 1.00 10.00 ? 3 DC B N3 1 ATOM 133 C C4 . DC B 1 3 ? 20.872 -10.693 10.216 1.00 10.00 ? 3 DC B C4 1 ATOM 134 N N4 . DC B 1 3 ? 21.294 -10.301 11.456 1.00 10.00 ? 3 DC B N4 1 ATOM 135 C C5 . DC B 1 3 ? 21.797 -11.225 9.308 1.00 10.00 ? 3 DC B C5 1 ATOM 136 C C6 . DC B 1 3 ? 21.343 -11.550 8.032 1.00 10.00 ? 3 DC B C6 1 ATOM 137 P P . DG B 1 4 ? 17.657 -11.649 2.345 1.00 10.00 ? 4 DG B P 1 ATOM 138 O OP1 . DG B 1 4 ? 17.843 -10.702 1.221 1.00 10.00 ? 4 DG B OP1 1 ATOM 139 O OP2 . DG B 1 4 ? 16.280 -11.990 2.659 1.00 10.00 ? 4 DG B OP2 1 ATOM 140 O "O5'" . DG B 1 4 ? 18.397 -13.029 2.034 1.00 10.00 ? 4 DG B "O5'" 1 ATOM 141 C "C5'" . DG B 1 4 ? 17.749 -14.267 2.437 1.00 10.00 ? 4 DG B "C5'" 1 ATOM 142 C "C4'" . DG B 1 4 ? 18.401 -15.387 1.688 1.00 10.00 ? 4 DG B "C4'" 1 ATOM 143 O "O4'" . DG B 1 4 ? 19.761 -15.460 2.128 1.00 10.00 ? 4 DG B "O4'" 1 ATOM 144 C "C3'" . DG B 1 4 ? 17.843 -16.784 1.865 1.00 10.00 ? 4 DG B "C3'" 1 ATOM 145 O "O3'" . DG B 1 4 ? 17.979 -17.565 0.679 1.00 10.00 ? 4 DG B "O3'" 1 ATOM 146 C "C2'" . DG B 1 4 ? 18.653 -17.327 3.022 1.00 10.00 ? 4 DG B "C2'" 1 ATOM 147 C "C1'" . DG B 1 4 ? 20.017 -16.739 2.726 1.00 10.00 ? 4 DG B "C1'" 1 ATOM 148 N N9 . DG B 1 4 ? 20.790 -16.480 3.975 1.00 10.00 ? 4 DG B N9 1 ATOM 149 C C8 . DG B 1 4 ? 22.146 -16.559 4.133 1.00 10.00 ? 4 DG B C8 1 ATOM 150 N N7 . DG B 1 4 ? 22.544 -16.163 5.348 1.00 10.00 ? 4 DG B N7 1 ATOM 151 C C5 . DG B 1 4 ? 21.398 -15.834 5.974 1.00 10.00 ? 4 DG B C5 1 ATOM 152 C C6 . DG B 1 4 ? 21.223 -15.323 7.291 1.00 10.00 ? 4 DG B C6 1 ATOM 153 O O6 . DG B 1 4 ? 22.086 -15.076 8.120 1.00 10.00 ? 4 DG B O6 1 ATOM 154 N N1 . DG B 1 4 ? 19.905 -15.073 7.590 1.00 10.00 ? 4 DG B N1 1 ATOM 155 C C2 . DG B 1 4 ? 18.847 -15.265 6.765 1.00 10.00 ? 4 DG B C2 1 ATOM 156 N N2 . DG B 1 4 ? 17.611 -14.882 7.227 1.00 10.00 ? 4 DG B N2 1 ATOM 157 N N3 . DG B 1 4 ? 19.015 -15.744 5.521 1.00 10.00 ? 4 DG B N3 1 ATOM 158 C C4 . DG B 1 4 ? 20.306 -16.020 5.191 1.00 10.00 ? 4 DG B C4 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n B 1 1 DC 1 1 1 DC C B . n B 1 2 DG 2 2 2 DG G B . n B 1 3 DC 3 3 3 DC C B . n B 1 4 DG 4 4 4 DG G B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 450 ? 1 MORE -2 ? 1 'SSA (A^2)' 1680 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-13 2 'Structure model' 1 1 2013-03-06 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N7 A DG 4 ? ? 1_555 C8 B DG 4 ? ? 5_665 0.81 2 1 N4 B DC 1 ? ? 1_555 OP1 B DC 3 ? ? 5_665 1.33 3 1 N7 A DG 4 ? ? 1_555 N9 B DG 4 ? ? 5_665 1.70 4 1 C8 A DG 4 ? ? 1_555 "C1'" B DG 4 ? ? 5_665 1.87 5 1 C5 A DG 4 ? ? 1_555 C8 B DG 4 ? ? 5_665 1.91 6 1 C8 A DG 4 ? ? 1_555 C8 B DG 4 ? ? 5_665 1.95 7 1 "O4'" A DG 2 ? ? 1_555 OP1 B DG 4 ? ? 3_655 1.97 8 1 C8 A DG 4 ? ? 1_555 N9 B DG 4 ? ? 5_665 2.04 9 1 N7 A DG 4 ? ? 1_555 N7 B DG 4 ? ? 5_665 2.06 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DC 1 ? ? C6 A DC 1 ? ? 1.394 1.339 0.055 0.008 N 2 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.350 1.388 -0.038 0.006 N 3 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.349 1.305 0.044 0.006 N 4 1 C5 A DG 4 ? ? N7 A DG 4 ? ? 1.344 1.388 -0.044 0.006 N 5 1 N7 A DG 4 ? ? C8 A DG 4 ? ? 1.344 1.305 0.039 0.006 N 6 1 C5 B DC 1 ? ? C6 B DC 1 ? ? 1.392 1.339 0.053 0.008 N 7 1 C5 B DG 2 ? ? N7 B DG 2 ? ? 1.347 1.388 -0.041 0.006 N 8 1 C5 B DC 3 ? ? C6 B DC 3 ? ? 1.393 1.339 0.054 0.008 N 9 1 C5 B DG 4 ? ? N7 B DG 4 ? ? 1.347 1.388 -0.041 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 103.30 108.00 -4.70 0.70 N 2 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 95.51 102.40 -6.89 0.80 N 3 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 99.25 105.90 -6.65 0.80 N 4 1 C5 A DC 3 ? ? C6 A DC 3 ? ? N1 A DC 3 ? ? 117.80 121.00 -3.20 0.50 N 5 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 103.20 108.00 -4.80 0.70 N # _ndb_struct_conf_na.entry_id 1VTS _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 4 1_555 -0.177 -0.249 -0.511 8.275 -1.223 3.422 1 A_DC1:DG4_B A 1 ? B 4 ? 19 1 1 A DG 2 1_555 B DC 3 1_555 -0.032 -0.161 0.389 -6.542 -2.246 2.976 2 A_DG2:DC3_B A 2 ? B 3 ? 19 1 1 A DC 3 1_555 B DG 2 1_555 -0.189 -0.128 -0.351 9.205 3.407 0.081 3 A_DC3:DG2_B A 3 ? B 2 ? 19 1 1 A DG 4 1_555 B DC 1 1_555 0.301 -0.205 -0.019 -3.634 -5.322 -0.168 4 A_DG4:DC1_B A 4 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 4 1_555 A DG 2 1_555 B DC 3 1_555 -0.087 5.562 3.880 -5.356 -7.634 -12.013 -10.781 -7.521 5.823 31.052 -21.788 -15.197 1 AA_DC1DG2:DC3DG4_BB A 1 ? B 4 ? A 2 ? B 3 ? 1 A DG 2 1_555 B DC 3 1_555 A DC 3 1_555 B DG 2 1_555 -0.092 -0.726 3.086 5.900 -3.591 -45.752 1.211 0.355 3.013 4.588 7.537 -46.242 2 AA_DG2DC3:DG2DC3_BB A 2 ? B 3 ? A 3 ? B 2 ? 1 A DC 3 1_555 B DG 2 1_555 A DG 4 1_555 B DC 1 1_555 0.134 5.514 3.725 -5.640 -11.767 -10.985 -4.533 -6.293 6.246 45.154 -21.642 -17.042 3 AA_DC3DG4:DC1DG2_BB A 3 ? B 2 ? A 4 ? B 1 ? #