0.028357
0.000000
0.006201
0.000000
0.016966
0.000000
0.000000
0.000000
0.028091
0.00000
0.00000
0.00000
Komander, D.
Deak, M.
Alessi, D.R.
Van Aalten, D.M.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
102.33
90.00
35.264
58.943
36.440
C17 H36 O22 P4
716.350
(2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3,4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-(1-HYDROXY BUTOXY)PROPYL BUTYRATE
DIC4-PHOSPHATIDYLINOSITOL(3,4,5)TRISPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
C
N
3
R
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
S
P
N
8
N
O
N
9
N
O
N
10
N
O
N
11
N
C
N
12
S
C
N
13
N
O
N
14
S
C
N
15
N
O
N
16
N
P
N
17
N
O
N
18
N
O
N
19
N
O
N
20
N
C
N
21
N
O
N
22
N
P
N
23
N
O
N
24
N
O
N
25
N
O
N
26
R
C
N
27
N
O
N
28
N
P
N
29
N
O
N
30
N
O
N
31
N
O
N
32
S
C
N
33
N
O
N
34
N
C
N
35
N
O
N
36
N
C
N
37
N
C
N
38
N
C
N
39
S
C
N
40
N
O
N
41
N
C
N
42
N
C
N
43
N
C
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
N
N
81
S
C
N
82
N
C
N
83
N
O
N
84
N
C
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
N
N
94
S
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
C
N
100
N
N
N
101
N
C
N
102
N
N
N
103
N
N
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
S
C
N
122
N
C
N
123
N
O
N
124
N
C
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
O
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
R
C
N
155
N
C
N
156
N
O
N
157
N
C
N
158
N
S
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
N
N
168
S
C
N
169
N
C
N
170
N
O
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
N
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
N
C
N
192
N
C
N
193
N
C
N
194
N
O
N
195
N
O
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
N
C
N
208
N
C
N
209
N
O
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
Y
221
N
C
Y
222
N
N
Y
223
N
C
Y
224
N
C
Y
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
S
C
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
N
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
C
N
315
N
S
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
O
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
R
C
N
388
N
O
N
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
N
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
N
N
452
S
C
N
453
N
C
N
454
N
O
N
455
N
C
N
456
N
C
N
457
N
C
N
458
N
O
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
doub
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
Y
219
N
sing
Y
220
N
doub
Y
221
N
doub
N
222
N
sing
Y
223
N
sing
N
224
N
sing
Y
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
Y
327
N
doub
Y
328
N
sing
Y
329
N
sing
N
330
N
sing
Y
331
N
doub
N
332
N
sing
Y
333
N
doub
N
334
N
sing
Y
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
Y
401
N
sing
Y
402
N
sing
N
403
N
sing
Y
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
Y
424
N
doub
Y
425
N
sing
Y
426
N
sing
N
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
UK
Embo J.
EMJODG
0897
0261-4189
23
3918
10.1038/SJ.EMBOJ.7600379
15457207
Structural Insights Into the Regulation of Pdk1 by Phosphoinositides and Inositol Phosphates
2004
10.2210/pdb1w1g/pdb
pdb_00001w1g
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRRORS
IMAGE PLATE
2003-09-15
RIGAKU RAXIS 4
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007
17816.186
3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1
2.7.1.37
PLECKSTRIN HOMOLOGY DOMAIN, RESIDUES 409-556
1
man
polymer
716.350
(2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3,4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-(1-HYDROXY BUTOXY)PROPYL BUTYRATE
1
syn
non-polymer
18.015
water
163
nat
water
HPDK1
no
no
GPLGSNIEQYIHDLDSNSFELDLQFSEDEKRLLLEKQAGGNPWHQFVENNLILKMGPVDKRKGLFARRRQLLLTEGPHLY
YVDPVNKVLKGEIPWSQELRPEAKNFKTFFVHTPNRTYYLMDPSGNAHKWCRKIQEVWRQRYQSHPDAAVQ
GPLGSNIEQYIHDLDSNSFELDLQFSEDEKRLLLEKQAGGNPWHQFVENNLILKMGPVDKRKGLFARRRQLLLTEGPHLY
YVDPVNKVLKGEIPWSQELRPEAKNFKTFFVHTPNRTYYLMDPSGNAHKWCRKIQEVWRQRYQSHPDAAVQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
511693
ESCHERICHIA COLI
BL21
PGEX
1
2.1
0.41
4.20
25 % PEG 4000, 0.1 M SODIUM ACETATE [PH 4.2], 0.3 M AMMONIUM ACETATE
chem_comp
chem_comp_atom
chem_comp_bond
database_2
entity
pdbx_database_status
pdbx_entity_nonpoly
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Structure summary
1
0
2004-11-19
1
1
2011-05-08
1
2
2011-07-13
1
3
2024-05-08
_chem_comp.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_entity.pdbx_description
_pdbx_database_status.status_code_sf
_pdbx_entity_nonpoly.name
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN PDK1 CATALYTIC DOMAIN
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH STAUROSPORINE
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH UCN-01
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH LY333531
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-2
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-1
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-3
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-8
CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO INOSITOL (1, 3,4,5)-TETRAKISPHOSPHATE
CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN
SHEET
THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN
ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW,
TWO SHEETS ARE DEFINED.
PDBE
Y
PDBE
2004-06-21
REL
REL
4PT
(2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3,4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-(1-HYDROXY BUTOXY)PROPYL BUTYRATE
HOH
water
4PT
1550
2
4PT
4PT
1550
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2070
3
HOH
HOH
2070
A
HOH
2071
3
HOH
HOH
2071
A
HOH
2072
3
HOH
HOH
2072
A
HOH
2073
3
HOH
HOH
2073
A
HOH
2074
3
HOH
HOH
2074
A
HOH
2075
3
HOH
HOH
2075
A
HOH
2076
3
HOH
HOH
2076
A
HOH
2077
3
HOH
HOH
2077
A
HOH
2078
3
HOH
HOH
2078
A
HOH
2079
3
HOH
HOH
2079
A
HOH
2080
3
HOH
HOH
2080
A
HOH
2081
3
HOH
HOH
2081
A
HOH
2082
3
HOH
HOH
2082
A
HOH
2083
3
HOH
HOH
2083
A
HOH
2084
3
HOH
HOH
2084
A
HOH
2085
3
HOH
HOH
2085
A
HOH
2086
3
HOH
HOH
2086
A
HOH
2087
3
HOH
HOH
2087
A
HOH
2088
3
HOH
HOH
2088
A
HOH
2089
3
HOH
HOH
2089
A
HOH
2090
3
HOH
HOH
2090
A
HOH
2091
3
HOH
HOH
2091
A
HOH
2092
3
HOH
HOH
2092
A
HOH
2093
3
HOH
HOH
2093
A
HOH
2094
3
HOH
HOH
2094
A
HOH
2095
3
HOH
HOH
2095
A
HOH
2096
3
HOH
HOH
2096
A
HOH
2097
3
HOH
HOH
2097
A
HOH
2098
3
HOH
HOH
2098
A
HOH
2099
3
HOH
HOH
2099
A
HOH
2100
3
HOH
HOH
2100
A
HOH
2101
3
HOH
HOH
2101
A
HOH
2102
3
HOH
HOH
2102
A
HOH
2103
3
HOH
HOH
2103
A
HOH
2104
3
HOH
HOH
2104
A
HOH
2105
3
HOH
HOH
2105
A
HOH
2106
3
HOH
HOH
2106
A
HOH
2107
3
HOH
HOH
2107
A
HOH
2108
3
HOH
HOH
2108
A
HOH
2109
3
HOH
HOH
2109
A
HOH
2110
3
HOH
HOH
2110
A
HOH
2111
3
HOH
HOH
2111
A
HOH
2112
3
HOH
HOH
2112
A
HOH
2113
3
HOH
HOH
2113
A
HOH
2114
3
HOH
HOH
2114
A
HOH
2115
3
HOH
HOH
2115
A
HOH
2116
3
HOH
HOH
2116
A
HOH
2117
3
HOH
HOH
2117
A
HOH
2118
3
HOH
HOH
2118
A
HOH
2119
3
HOH
HOH
2119
A
HOH
2120
3
HOH
HOH
2120
A
HOH
2121
3
HOH
HOH
2121
A
HOH
2122
3
HOH
HOH
2122
A
HOH
2123
3
HOH
HOH
2123
A
HOH
2124
3
HOH
HOH
2124
A
HOH
2125
3
HOH
HOH
2125
A
HOH
2126
3
HOH
HOH
2126
A
HOH
2127
3
HOH
HOH
2127
A
HOH
2128
3
HOH
HOH
2128
A
HOH
2129
3
HOH
HOH
2129
A
HOH
2130
3
HOH
HOH
2130
A
HOH
2131
3
HOH
HOH
2131
A
HOH
2132
3
HOH
HOH
2132
A
HOH
2133
3
HOH
HOH
2133
A
HOH
2134
3
HOH
HOH
2134
A
HOH
2135
3
HOH
HOH
2135
A
HOH
2136
3
HOH
HOH
2136
A
HOH
2137
3
HOH
HOH
2137
A
HOH
2138
3
HOH
HOH
2138
A
HOH
2139
3
HOH
HOH
2139
A
HOH
2140
3
HOH
HOH
2140
A
HOH
2141
3
HOH
HOH
2141
A
HOH
2142
3
HOH
HOH
2142
A
HOH
2143
3
HOH
HOH
2143
A
HOH
2144
3
HOH
HOH
2144
A
HOH
2145
3
HOH
HOH
2145
A
HOH
2146
3
HOH
HOH
2146
A
HOH
2147
3
HOH
HOH
2147
A
HOH
2148
3
HOH
HOH
2148
A
HOH
2149
3
HOH
HOH
2149
A
HOH
2150
3
HOH
HOH
2150
A
HOH
2151
3
HOH
HOH
2151
A
HOH
2152
3
HOH
HOH
2152
A
HOH
2153
3
HOH
HOH
2153
A
HOH
2154
3
HOH
HOH
2154
A
HOH
2155
3
HOH
HOH
2155
A
HOH
2156
3
HOH
HOH
2156
A
HOH
2157
3
HOH
HOH
2157
A
HOH
2158
3
HOH
HOH
2158
A
HOH
2159
3
HOH
HOH
2159
A
HOH
2160
3
HOH
HOH
2160
A
HOH
2161
3
HOH
HOH
2161
A
HOH
2162
3
HOH
HOH
2162
A
HOH
2163
3
HOH
HOH
2163
A
n
1
406
A
PRO
407
n
2
PRO
407
A
LEU
408
n
3
LEU
408
A
GLY
409
n
4
GLY
409
A
SER
410
n
5
SER
410
A
ASN
411
n
6
ASN
411
A
ILE
412
n
7
ILE
412
A
GLU
413
n
8
GLU
413
A
GLN
414
n
9
GLN
414
A
TYR
415
n
10
TYR
415
A
ILE
416
n
11
ILE
416
A
HIS
417
n
12
HIS
417
A
ASP
418
n
13
ASP
418
A
LEU
419
n
14
LEU
419
A
ASP
420
n
15
ASP
420
A
SER
421
n
16
SER
421
A
ASN
422
n
17
ASN
422
A
SER
423
n
18
SER
423
A
PHE
424
n
19
PHE
424
A
GLU
425
n
20
GLU
425
A
LEU
426
n
21
LEU
426
A
ASP
427
n
22
ASP
427
A
LEU
428
n
23
LEU
428
A
GLN
429
n
24
GLN
429
A
PHE
430
n
25
PHE
430
A
SER
431
n
26
SER
431
A
GLU
432
n
27
GLU
432
A
ASP
433
n
28
ASP
433
A
GLU
434
n
29
GLU
434
A
LYS
435
n
30
LYS
435
A
ARG
436
n
31
ARG
436
A
LEU
437
n
32
LEU
437
A
LEU
438
n
33
LEU
438
A
LEU
439
n
34
LEU
439
A
GLU
440
n
35
GLU
440
A
LYS
441
n
36
LYS
441
A
GLN
442
n
37
GLN
442
A
ALA
443
n
38
ALA
443
A
GLY
444
n
39
GLY
444
A
GLY
445
n
40
GLY
445
A
ASN
446
n
41
ASN
446
A
PRO
447
n
42
PRO
447
A
TRP
448
n
43
TRP
448
A
HIS
449
n
44
HIS
449
A
GLN
450
n
45
GLN
450
A
PHE
451
n
46
PHE
451
A
VAL
452
n
47
VAL
452
A
GLU
453
n
48
GLU
453
A
ASN
454
n
49
ASN
454
A
ASN
455
n
50
ASN
455
A
LEU
456
n
51
LEU
456
A
ILE
457
n
52
ILE
457
A
LEU
458
n
53
LEU
458
A
LYS
459
n
54
LYS
459
A
MET
460
n
55
MET
460
A
GLY
461
n
56
GLY
461
A
PRO
462
n
57
PRO
462
A
VAL
463
n
58
VAL
463
A
ASP
464
n
59
ASP
464
A
LYS
465
n
60
LYS
465
A
ARG
466
n
61
ARG
466
A
LYS
467
n
62
LYS
467
A
GLY
468
n
63
GLY
468
A
LEU
469
n
64
LEU
469
A
PHE
470
n
65
PHE
470
A
ALA
471
n
66
ALA
471
A
ARG
472
n
67
ARG
472
A
ARG
473
n
68
ARG
473
A
ARG
474
n
69
ARG
474
A
GLN
475
n
70
GLN
475
A
LEU
476
n
71
LEU
476
A
LEU
477
n
72
LEU
477
A
LEU
478
n
73
LEU
478
A
THR
479
n
74
THR
479
A
GLU
480
n
75
GLU
480
A
GLY
481
n
76
GLY
481
A
PRO
482
n
77
PRO
482
A
HIS
483
n
78
HIS
483
A
LEU
484
n
79
LEU
484
A
TYR
485
n
80
TYR
485
A
TYR
486
n
81
TYR
486
A
VAL
487
n
82
VAL
487
A
ASP
488
n
83
ASP
488
A
PRO
489
n
84
PRO
489
A
VAL
490
n
85
VAL
490
A
ASN
491
n
86
ASN
491
A
LYS
492
n
87
LYS
492
A
VAL
493
n
88
VAL
493
A
LEU
494
n
89
LEU
494
A
LYS
495
n
90
LYS
495
A
GLY
496
n
91
GLY
496
A
GLU
497
n
92
GLU
497
A
ILE
498
n
93
ILE
498
A
PRO
499
n
94
PRO
499
A
TRP
500
n
95
TRP
500
A
SER
501
n
96
SER
501
A
GLN
502
n
97
GLN
502
A
GLU
503
n
98
GLU
503
A
LEU
504
n
99
LEU
504
A
ARG
505
n
100
ARG
505
A
PRO
506
n
101
PRO
506
A
GLU
507
n
102
GLU
507
A
ALA
508
n
103
ALA
508
A
LYS
509
n
104
LYS
509
A
ASN
510
n
105
ASN
510
A
PHE
511
n
106
PHE
511
A
LYS
512
n
107
LYS
512
A
THR
513
n
108
THR
513
A
PHE
514
n
109
PHE
514
A
PHE
515
n
110
PHE
515
A
VAL
516
n
111
VAL
516
A
HIS
517
n
112
HIS
517
A
THR
518
n
113
THR
518
A
PRO
519
n
114
PRO
519
A
ASN
520
n
115
ASN
520
A
ARG
521
n
116
ARG
521
A
THR
522
n
117
THR
522
A
TYR
523
n
118
TYR
523
A
TYR
524
n
119
TYR
524
A
LEU
525
n
120
LEU
525
A
MET
526
n
121
MET
526
A
ASP
527
n
122
ASP
527
A
PRO
528
n
123
PRO
528
A
SER
529
n
124
SER
529
A
GLY
530
n
125
GLY
530
A
ASN
531
n
126
ASN
531
A
ALA
532
n
127
ALA
532
A
HIS
533
n
128
HIS
533
A
LYS
534
n
129
LYS
534
A
TRP
535
n
130
TRP
535
A
CYS
536
n
131
CYS
536
A
ARG
537
n
132
ARG
537
A
LYS
538
n
133
LYS
538
A
ILE
539
n
134
ILE
539
A
GLN
540
n
135
GLN
540
A
GLU
541
n
136
GLU
541
A
VAL
542
n
137
VAL
542
A
TRP
543
n
138
TRP
543
A
ARG
544
n
139
ARG
544
A
GLN
545
n
140
GLN
545
A
ARG
546
n
141
ARG
546
A
TYR
547
n
142
TYR
547
A
GLN
548
n
143
GLN
548
A
SER
549
n
144
SER
549
A
HIS
550
n
145
HIS
550
A
n
146
551
A
n
147
552
A
n
148
553
A
n
149
554
A
n
150
555
A
n
151
556
A
0.1679
0.1263
-0.1429
1.4071
-0.5604
0.4956
-0.0012
-0.0141
0.0265
-0.0763
0.0301
-0.0092
0.0443
-0.0069
-0.0288
-0.0377
-0.0001
-0.0004
0.0133
-0.0049
-0.0088
refined
10.5388
27.1746
24.0723
X-RAY DIFFRACTION
0.4742
0.2713
-0.2195
1.4621
-0.8330
0.4845
0.0278
0.0203
0.0334
-0.0906
0.0671
0.0777
0.0498
0.0051
-0.0950
-0.0232
-0.0101
-0.0146
-0.0096
-0.0199
-0.0304
refined
9.5684
26.7739
22.8190
X-RAY DIFFRACTION
A
414
A
466
X-RAY DIFFRACTION
1
A
472
A
487
X-RAY DIFFRACTION
1
A
494
A
543
X-RAY DIFFRACTION
1
A
408
A
413
X-RAY DIFFRACTION
2
A
466
A
471
X-RAY DIFFRACTION
2
A
544
A
549
X-RAY DIFFRACTION
2
A
488
A
493
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PQS
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
419
A
N
LEU
14
A
O
SER
423
A
O
SER
18
A
N
LEU
426
A
N
LEU
21
A
O
LEU
458
A
O
LEU
53
A
N
LYS
467
A
N
LYS
62
A
O
PHE
470
A
O
PHE
65
A
N
THR
479
A
N
THR
74
A
O
HIS
483
A
O
HIS
78
A
N
ASP
488
A
N
ASP
83
A
O
VAL
493
A
O
VAL
88
A
N
LEU
419
A
N
LEU
14
A
O
SER
423
A
O
SER
18
A
N
LEU
426
A
N
LEU
21
A
O
LEU
458
A
O
LEU
53
A
N
ARG
466
A
N
ARG
61
A
O
TYR
524
A
O
TYR
119
A
N
LEU
525
A
N
LEU
120
A
O
PHE
514
A
O
PHE
109
A
N
HIS
517
A
N
HIS
112
A
O
ARG
505
A
O
ARG
100
1
A
CG
LEU
408
A
CG
LEU
3
1
Y
1
A
CD1
LEU
408
A
CD1
LEU
3
1
Y
1
A
CD2
LEU
408
A
CD2
LEU
3
1
Y
1
A
CG
GLU
503
A
CG
GLU
98
1
Y
1
A
CD
GLU
503
A
CD
GLU
98
1
Y
1
A
OE1
GLU
503
A
OE1
GLU
98
1
Y
1
A
OE2
GLU
503
A
OE2
GLU
98
1
Y
1
A
CG
LYS
509
A
CG
LYS
104
1
Y
1
A
CD
LYS
509
A
CD
LYS
104
1
Y
1
A
CE
LYS
509
A
CE
LYS
104
1
Y
1
A
NZ
LYS
509
A
NZ
LYS
104
1
Y
1
A
CA
HIS
550
A
CA
HIS
145
1
Y
1
A
C
HIS
550
A
C
HIS
145
1
Y
1
A
O
HIS
550
A
O
HIS
145
1
Y
1
A
CB
HIS
550
A
CB
HIS
145
1
Y
1
A
CG
HIS
550
A
CG
HIS
145
1
Y
1
A
ND1
HIS
550
A
ND1
HIS
145
1
Y
1
A
CD2
HIS
550
A
CD2
HIS
145
1
Y
1
A
CE1
HIS
550
A
CE1
HIS
145
1
Y
1
A
NE2
HIS
550
A
NE2
HIS
145
1
Y
1
A
C0L
4PT
1550
B
C0L
4PT
1
1
N
1
A
O0M
4PT
1550
B
O0M
4PT
1
1
N
1
A
C0N
4PT
1550
B
C0N
4PT
1
1
N
1
A
C0P
4PT
1550
B
C0P
4PT
1
1
N
1
A
C0Q
4PT
1550
B
C0Q
4PT
1
1
N
1
A
C0G
4PT
1550
B
C0G
4PT
1
1
N
1
A
O0H
4PT
1550
B
O0H
4PT
1
1
N
1
A
C0I
4PT
1550
B
C0I
4PT
1
1
N
1
A
C0J
4PT
1550
B
C0J
4PT
1
1
N
1
A
C0K
4PT
1550
B
C0K
4PT
1
1
N
1
A
GLY
406
A
GLY
1
1
Y
1
A
PRO
551
A
PRO
146
1
Y
1
A
ASP
552
A
ASP
147
1
Y
1
A
ALA
553
A
ALA
148
1
Y
1
A
ALA
554
A
ALA
149
1
Y
1
A
VAL
555
A
VAL
150
1
Y
1
A
GLN
556
A
GLN
151
1
Y
1
A
A
NE2
O
GLN
HOH
429
2041
2.13
1
7.53
0.90
118.30
125.83
A
A
A
CB
CG
OD2
ASP
ASP
ASP
464
464
464
N
1
A
A
O
O
HOH
HOH
2025
2108
2.09
1_555
1_556
1
A
A
O
O
HOH
HOH
2104
2147
2.17
1_555
1_554
1
A
ASN
411
39.46
64.84
1
A
PHE
470
-121.79
-137.16
1
A
ASN
510
-160.56
-154.91
1
A
GLN
548
-119.56
-163.18
1
A
SER
549
67.85
151.93
26.94
1.58000
0.00000
0.06000
-0.83000
0.00000
-0.73000
0.972
0.956
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THE SIDE CHAINS OF SOME DISORDERED RESIDUES WERE REFINED EITHER WITH THE OCCUPANCY SET TO 0.02, OR THE RESIDUE WAS MUTATED TO ALA. THE ACYL-CHAINS OF THE LIGAND WERE NOT MODELLED DUE TO DISORDER.
0.236
0.182
0.183
1.45
25.00
545
25241
2.100
99.7
4.471
0.073
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.089
0.081
0.80
0.80
1.20
PDK1PH INSP4 MODEL
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.45
25.00
163
1390
33
0
1194
0.016
0.022
1273
0.002
0.020
1115
1.703
1.961
1731
0.860
3.001
2588
6.622
5.000
142
34.693
23.731
67
13.710
15.000
219
17.708
15.000
10
0.109
0.200
184
0.008
0.020
1363
0.001
0.020
263
0.221
0.200
267
0.200
0.200
1116
0.181
0.200
613
0.107
0.200
672
0.159
0.200
117
0.166
0.200
8
0.240
0.200
39
0.274
0.200
17
1.727
1.500
746
0.745
1.500
287
2.305
2.000
1168
3.614
3.000
612
4.923
4.500
563
0.3080
0.3390
1.49
44
1834
20
100.00
1.450
30.000
1W1G
25810
2.000
0.05000
1
8.8000
2.900
99.7
0.37000
1.45
1.50
2.500
1
2.70
100.0
refinement
REFMAC
5.2.0003
data reduction
CrystalClear
data scaling
d*TREK
phasing
CNS
Crystal Structure of the PDK1 Pleckstrin Homology (PH) domain bound to DiC4-phosphatidylinositol (3,4,5)-trisphosphate
1
N
N
2
N
N
3
N
N
A
ASN
411
A
ASN
6
HELX_P
A
GLN
414
A
GLN
9
5
1
4
A
SER
431
A
SER
26
HELX_P
A
ASN
446
A
ASN
41
1
2
16
A
TRP
448
A
TRP
43
HELX_P
A
VAL
452
A
VAL
47
5
3
5
A
ASN
531
A
ASN
126
HELX_P
A
GLN
548
A
GLN
143
1
4
18
TRANSFERASE
TRANSFERASE, PDK1, PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE 1, PKB, PLECKSTRIN HOMOLOGY DOMAIN, INOSITOL PHOSPHATE, PHOSPHOINOSITIDE, SIGNAL TRANSDUCTION, PI3-KINASE, PIP3 SERINE/THREONINE PROTEIN KINASE
A
GLY
481
A
GLY
76
1
A
PRO
482
A
PRO
77
-0.22
1W1G
PDB
1
1W1G
PDPK_HUMAN
UNP
1
O15530
406
408
1W1G
406
408
1W1G
A
1
1
3
409
556
1W1G
409
556
O15530
A
2
4
151
6
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
416
A
ILE
11
A
ASP
420
A
ASP
15
A
SER
423
A
SER
18
A
LEU
426
A
LEU
21
A
ILE
457
A
ILE
52
A
LYS
467
A
LYS
62
A
PHE
470
A
PHE
65
A
THR
479
A
THR
74
A
HIS
483
A
HIS
78
A
ASP
488
A
ASP
83
A
VAL
493
A
VAL
88
A
ILE
498
A
ILE
93
A
ILE
416
A
ILE
11
A
ASP
420
A
ASP
15
A
SER
423
A
SER
18
A
LEU
426
A
LEU
21
A
ILE
457
A
ILE
52
A
LYS
467
A
LYS
62
A
ARG
521
A
ARG
116
A
MET
526
A
MET
121
A
THR
513
A
THR
108
A
THR
518
A
THR
113
A
ARG
505
A
ARG
100
A
ALA
508
A
ALA
103
BINDING SITE FOR RESIDUE 4PT A1550
Software
14
A
HIS
417
A
HIS
12
14
1_555
A
LEU
419
A
LEU
14
14
1_555
A
LYS
465
A
LYS
60
14
1_555
A
LYS
467
A
LYS
62
14
1_555
A
ARG
472
A
ARG
67
14
1_555
A
ARG
474
A
ARG
69
14
1_555
A
TYR
486
A
TYR
81
14
1_555
A
LYS
495
A
LYS
90
14
1_555
A
ARG
521
A
ARG
116
14
1_555
A
HOH
2029
C
HOH
14
1_555
A
HOH
2084
C
HOH
14
1_555
A
HOH
2155
C
HOH
14
1_555
A
HOH
2156
C
HOH
14
1_555
A
HOH
2157
C
HOH
14
1_555
4
P 1 21 1