0.027543
0.000000
0.000000
0.000000
0.018337
0.000000
0.000000
0.000000
0.014065
0.00000
0.00000
0.00000
Kontopidis, G.
Taylor, P.
Walkinshaw, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
36.307
54.536
71.099
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C9 H15 N O3
185.220
ETHYL OXO(PIPERIDIN-1-YL)ACETATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
C
N
92
N
C
N
93
N
N
N
94
N
C
N
95
N
O
N
96
N
C
N
97
N
O
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
S
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
N
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
O
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
N
N
156
N
C
N
157
N
C
N
158
N
O
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
N
N
166
S
C
N
167
N
C
N
168
N
O
N
169
N
C
Y
170
N
C
Y
171
N
N
Y
172
N
C
Y
173
N
C
Y
174
N
N
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
N
N
190
S
C
N
191
N
C
N
192
N
O
N
193
S
C
N
194
N
C
N
195
N
C
N
196
N
C
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
N
N
212
S
C
N
213
N
C
N
214
N
O
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
N
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
S
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
N
306
N
C
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
O
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
R
C
N
337
N
O
N
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
N
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
N
387
N
O
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
N
405
N
C
N
406
N
C
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
Y
168
N
sing
Y
169
N
doub
Y
170
N
doub
N
171
N
sing
Y
172
N
sing
N
173
N
sing
Y
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
Y
276
N
doub
Y
277
N
sing
Y
278
N
sing
N
279
N
sing
Y
280
N
doub
N
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
Y
373
N
doub
Y
374
N
sing
Y
375
N
sing
N
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
60
479
10.1107/S0907444904000174
14993672
Enzymatic and Structural Characterization of Non-Peptide Ligand-Cyclophilin Complexes
2004
10.2210/pdb1w8m/pdb
pdb_00001w8m
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
IMAGE PLATE
1998-08-20
MARRESEARCH 300
SINGLE WAVELENGTH
M
x-ray
1
1.488
1.0
PX7.2
SRS
1.488
SYNCHROTRON
SRS BEAMLINE PX7.2
18036.504
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A
5.2.1.8
1
man
polymer
185.220
ETHYL OXO(PIPERIDIN-1-YL)ACETATE
1
syn
non-polymer
18.015
water
222
nat
water
CYCLOPHILIN A, PPIASE, ROTAMASE
no
no
MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYG
EKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIAD
CGQLE
MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYG
EKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIAD
CGQLE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
562
ESCHERICHIA COLI
1
1.9
36.2
8.00
100MM TRIS.HCL (PH 8.0), 22% (W/V) PEG 8000, 5% (V/V) DMSO, 0.02% NAN3.
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2004-09-30
1
1
2011-05-08
1
2
2011-07-13
1
3
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DISCOVERY, SYNTHESIS AND STRUCTURAL CHARACTERISATION OF A FAMILY OF SYNTHETIC CYCLOPHILIN INHIBITORS.
ENZYMATIC AND STRUCTURAL CHARACTERIZATION OF NON PEPTIDE LIGAND CYCLOPHILIN COMPLEXES
ENZYMATIC AND STRUCTURAL CHARACTERIZATION OF NON PEPTIDE LIGAND CYCLOPHILIN COMPLEXES
PDBE
Y
PDBE
2004-09-24
REL
E1P
ETHYL OXO(PIPERIDIN-1-YL)ACETATE
HOH
water
1CWH
PDB ENTRY 1CWH
PDB
experimental model
E1P
1166
2
E1P
E1P
1166
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2070
3
HOH
HOH
2070
A
HOH
2071
3
HOH
HOH
2071
A
HOH
2072
3
HOH
HOH
2072
A
HOH
2073
3
HOH
HOH
2073
A
HOH
2074
3
HOH
HOH
2074
A
HOH
2075
3
HOH
HOH
2075
A
HOH
2076
3
HOH
HOH
2076
A
HOH
2077
3
HOH
HOH
2077
A
HOH
2078
3
HOH
HOH
2078
A
HOH
2079
3
HOH
HOH
2079
A
HOH
2080
3
HOH
HOH
2080
A
HOH
2081
3
HOH
HOH
2081
A
HOH
2082
3
HOH
HOH
2082
A
HOH
2083
3
HOH
HOH
2083
A
HOH
2084
3
HOH
HOH
2084
A
HOH
2085
3
HOH
HOH
2085
A
HOH
2086
3
HOH
HOH
2086
A
HOH
2087
3
HOH
HOH
2087
A
HOH
2088
3
HOH
HOH
2088
A
HOH
2089
3
HOH
HOH
2089
A
HOH
2090
3
HOH
HOH
2090
A
HOH
2091
3
HOH
HOH
2091
A
HOH
2092
3
HOH
HOH
2092
A
HOH
2093
3
HOH
HOH
2093
A
HOH
2094
3
HOH
HOH
2094
A
HOH
2095
3
HOH
HOH
2095
A
HOH
2096
3
HOH
HOH
2096
A
HOH
2097
3
HOH
HOH
2097
A
HOH
2098
3
HOH
HOH
2098
A
HOH
2099
3
HOH
HOH
2099
A
HOH
2100
3
HOH
HOH
2100
A
HOH
2101
3
HOH
HOH
2101
A
HOH
2102
3
HOH
HOH
2102
A
HOH
2103
3
HOH
HOH
2103
A
HOH
2104
3
HOH
HOH
2104
A
HOH
2105
3
HOH
HOH
2105
A
HOH
2106
3
HOH
HOH
2106
A
HOH
2107
3
HOH
HOH
2107
A
HOH
2108
3
HOH
HOH
2108
A
HOH
2109
3
HOH
HOH
2109
A
HOH
2110
3
HOH
HOH
2110
A
HOH
2111
3
HOH
HOH
2111
A
HOH
2112
3
HOH
HOH
2112
A
HOH
2113
3
HOH
HOH
2113
A
HOH
2114
3
HOH
HOH
2114
A
HOH
2115
3
HOH
HOH
2115
A
HOH
2116
3
HOH
HOH
2116
A
HOH
2117
3
HOH
HOH
2117
A
HOH
2118
3
HOH
HOH
2118
A
HOH
2119
3
HOH
HOH
2119
A
HOH
2120
3
HOH
HOH
2120
A
HOH
2121
3
HOH
HOH
2121
A
HOH
2122
3
HOH
HOH
2122
A
HOH
2123
3
HOH
HOH
2123
A
HOH
2124
3
HOH
HOH
2124
A
HOH
2125
3
HOH
HOH
2125
A
HOH
2126
3
HOH
HOH
2126
A
HOH
2127
3
HOH
HOH
2127
A
HOH
2128
3
HOH
HOH
2128
A
HOH
2129
3
HOH
HOH
2129
A
HOH
2130
3
HOH
HOH
2130
A
HOH
2131
3
HOH
HOH
2131
A
HOH
2132
3
HOH
HOH
2132
A
HOH
2133
3
HOH
HOH
2133
A
HOH
2134
3
HOH
HOH
2134
A
HOH
2135
3
HOH
HOH
2135
A
HOH
2136
3
HOH
HOH
2136
A
HOH
2137
3
HOH
HOH
2137
A
HOH
2138
3
HOH
HOH
2138
A
HOH
2139
3
HOH
HOH
2139
A
HOH
2140
3
HOH
HOH
2140
A
HOH
2141
3
HOH
HOH
2141
A
HOH
2142
3
HOH
HOH
2142
A
HOH
2143
3
HOH
HOH
2143
A
HOH
2144
3
HOH
HOH
2144
A
HOH
2145
3
HOH
HOH
2145
A
HOH
2146
3
HOH
HOH
2146
A
HOH
2147
3
HOH
HOH
2147
A
HOH
2148
3
HOH
HOH
2148
A
HOH
2149
3
HOH
HOH
2149
A
HOH
2150
3
HOH
HOH
2150
A
HOH
2151
3
HOH
HOH
2151
A
HOH
2152
3
HOH
HOH
2152
A
HOH
2153
3
HOH
HOH
2153
A
HOH
2154
3
HOH
HOH
2154
A
HOH
2155
3
HOH
HOH
2155
A
HOH
2156
3
HOH
HOH
2156
A
HOH
2157
3
HOH
HOH
2157
A
HOH
2158
3
HOH
HOH
2158
A
HOH
2159
3
HOH
HOH
2159
A
HOH
2160
3
HOH
HOH
2160
A
HOH
2161
3
HOH
HOH
2161
A
HOH
2162
3
HOH
HOH
2162
A
HOH
2163
3
HOH
HOH
2163
A
HOH
2164
3
HOH
HOH
2164
A
HOH
2165
3
HOH
HOH
2165
A
HOH
2166
3
HOH
HOH
2166
A
HOH
2167
3
HOH
HOH
2167
A
HOH
2168
3
HOH
HOH
2168
A
HOH
2169
3
HOH
HOH
2169
A
HOH
2170
3
HOH
HOH
2170
A
HOH
2171
3
HOH
HOH
2171
A
HOH
2172
3
HOH
HOH
2172
A
HOH
2173
3
HOH
HOH
2173
A
HOH
2174
3
HOH
HOH
2174
A
HOH
2175
3
HOH
HOH
2175
A
HOH
2176
3
HOH
HOH
2176
A
HOH
2177
3
HOH
HOH
2177
A
HOH
2178
3
HOH
HOH
2178
A
HOH
2179
3
HOH
HOH
2179
A
HOH
2180
3
HOH
HOH
2180
A
HOH
2181
3
HOH
HOH
2181
A
HOH
2182
3
HOH
HOH
2182
A
HOH
2183
3
HOH
HOH
2183
A
HOH
2184
3
HOH
HOH
2184
A
HOH
2185
3
HOH
HOH
2185
A
HOH
2186
3
HOH
HOH
2186
A
HOH
2187
3
HOH
HOH
2187
A
HOH
2188
3
HOH
HOH
2188
A
HOH
2189
3
HOH
HOH
2189
A
HOH
2190
3
HOH
HOH
2190
A
HOH
2191
3
HOH
HOH
2191
A
HOH
2192
3
HOH
HOH
2192
A
HOH
2193
3
HOH
HOH
2193
A
HOH
2194
3
HOH
HOH
2194
A
HOH
2195
3
HOH
HOH
2195
A
HOH
2196
3
HOH
HOH
2196
A
HOH
2197
3
HOH
HOH
2197
A
HOH
2198
3
HOH
HOH
2198
A
HOH
2199
3
HOH
HOH
2199
A
HOH
2200
3
HOH
HOH
2200
A
HOH
2201
3
HOH
HOH
2201
A
HOH
2202
3
HOH
HOH
2202
A
HOH
2203
3
HOH
HOH
2203
A
HOH
2204
3
HOH
HOH
2204
A
HOH
2205
3
HOH
HOH
2205
A
HOH
2206
3
HOH
HOH
2206
A
HOH
2207
3
HOH
HOH
2207
A
HOH
2208
3
HOH
HOH
2208
A
HOH
2209
3
HOH
HOH
2209
A
HOH
2210
3
HOH
HOH
2210
A
HOH
2211
3
HOH
HOH
2211
A
HOH
2212
3
HOH
HOH
2212
A
HOH
2213
3
HOH
HOH
2213
A
HOH
2214
3
HOH
HOH
2214
A
HOH
2215
3
HOH
HOH
2215
A
HOH
2216
3
HOH
HOH
2216
A
HOH
2217
3
HOH
HOH
2217
A
HOH
2218
3
HOH
HOH
2218
A
HOH
2219
3
HOH
HOH
2219
A
HOH
2220
3
HOH
HOH
2220
A
HOH
2221
3
HOH
HOH
2221
A
HOH
2222
3
HOH
HOH
2222
A
MET
1
n
1
MET
1
A
VAL
2
n
2
VAL
2
A
ASN
3
n
3
ASN
3
A
PRO
4
n
4
PRO
4
A
THR
5
n
5
THR
5
A
VAL
6
n
6
VAL
6
A
PHE
7
n
7
PHE
7
A
PHE
8
n
8
PHE
8
A
ASP
9
n
9
ASP
9
A
ILE
10
n
10
ILE
10
A
ALA
11
n
11
ALA
11
A
VAL
12
n
12
VAL
12
A
ASP
13
n
13
ASP
13
A
GLY
14
n
14
GLY
14
A
GLU
15
n
15
GLU
15
A
PRO
16
n
16
PRO
16
A
LEU
17
n
17
LEU
17
A
GLY
18
n
18
GLY
18
A
ARG
19
n
19
ARG
19
A
VAL
20
n
20
VAL
20
A
SER
21
n
21
SER
21
A
PHE
22
n
22
PHE
22
A
GLU
23
n
23
GLU
23
A
LEU
24
n
24
LEU
24
A
PHE
25
n
25
PHE
25
A
ALA
26
n
26
ALA
26
A
ASP
27
n
27
ASP
27
A
LYS
28
n
28
LYS
28
A
VAL
29
n
29
VAL
29
A
PRO
30
n
30
PRO
30
A
LYS
31
n
31
LYS
31
A
THR
32
n
32
THR
32
A
ALA
33
n
33
ALA
33
A
GLU
34
n
34
GLU
34
A
ASN
35
n
35
ASN
35
A
PHE
36
n
36
PHE
36
A
ARG
37
n
37
ARG
37
A
ALA
38
n
38
ALA
38
A
LEU
39
n
39
LEU
39
A
SER
40
n
40
SER
40
A
THR
41
n
41
THR
41
A
GLY
42
n
42
GLY
42
A
GLU
43
n
43
GLU
43
A
LYS
44
n
44
LYS
44
A
GLY
45
n
45
GLY
45
A
PHE
46
n
46
PHE
46
A
GLY
47
n
47
GLY
47
A
TYR
48
n
48
TYR
48
A
LYS
49
n
49
LYS
49
A
GLY
50
n
50
GLY
50
A
SER
51
n
51
SER
51
A
CYS
52
n
52
CYS
52
A
PHE
53
n
53
PHE
53
A
HIS
54
n
54
HIS
54
A
ARG
55
n
55
ARG
55
A
ILE
56
n
56
ILE
56
A
ILE
57
n
57
ILE
57
A
PRO
58
n
58
PRO
58
A
GLY
59
n
59
GLY
59
A
PHE
60
n
60
PHE
60
A
MET
61
n
61
MET
61
A
CYS
62
n
62
CYS
62
A
GLN
63
n
63
GLN
63
A
GLY
64
n
64
GLY
64
A
GLY
65
n
65
GLY
65
A
ASP
66
n
66
ASP
66
A
PHE
67
n
67
PHE
67
A
THR
68
n
68
THR
68
A
ARG
69
n
69
ARG
69
A
HIS
70
n
70
HIS
70
A
ASN
71
n
71
ASN
71
A
GLY
72
n
72
GLY
72
A
THR
73
n
73
THR
73
A
GLY
74
n
74
GLY
74
A
GLY
75
n
75
GLY
75
A
LYS
76
n
76
LYS
76
A
SER
77
n
77
SER
77
A
ILE
78
n
78
ILE
78
A
TYR
79
n
79
TYR
79
A
GLY
80
n
80
GLY
80
A
GLU
81
n
81
GLU
81
A
LYS
82
n
82
LYS
82
A
PHE
83
n
83
PHE
83
A
GLU
84
n
84
GLU
84
A
ASP
85
n
85
ASP
85
A
GLU
86
n
86
GLU
86
A
ASN
87
n
87
ASN
87
A
PHE
88
n
88
PHE
88
A
ILE
89
n
89
ILE
89
A
LEU
90
n
90
LEU
90
A
LYS
91
n
91
LYS
91
A
HIS
92
n
92
HIS
92
A
THR
93
n
93
THR
93
A
GLY
94
n
94
GLY
94
A
PRO
95
n
95
PRO
95
A
GLY
96
n
96
GLY
96
A
ILE
97
n
97
ILE
97
A
LEU
98
n
98
LEU
98
A
SER
99
n
99
SER
99
A
MET
100
n
100
MET
100
A
ALA
101
n
101
ALA
101
A
ASN
102
n
102
ASN
102
A
ALA
103
n
103
ALA
103
A
GLY
104
n
104
GLY
104
A
PRO
105
n
105
PRO
105
A
ASN
106
n
106
ASN
106
A
THR
107
n
107
THR
107
A
ASN
108
n
108
ASN
108
A
GLY
109
n
109
GLY
109
A
SER
110
n
110
SER
110
A
GLN
111
n
111
GLN
111
A
PHE
112
n
112
PHE
112
A
PHE
113
n
113
PHE
113
A
ILE
114
n
114
ILE
114
A
CYS
115
n
115
CYS
115
A
THR
116
n
116
THR
116
A
ALA
117
n
117
ALA
117
A
LYS
118
n
118
LYS
118
A
THR
119
n
119
THR
119
A
GLU
120
n
120
GLU
120
A
TRP
121
n
121
TRP
121
A
LEU
122
n
122
LEU
122
A
ASP
123
n
123
ASP
123
A
GLY
124
n
124
GLY
124
A
LYS
125
n
125
LYS
125
A
HIS
126
n
126
HIS
126
A
VAL
127
n
127
VAL
127
A
VAL
128
n
128
VAL
128
A
PHE
129
n
129
PHE
129
A
GLY
130
n
130
GLY
130
A
LYS
131
n
131
LYS
131
A
VAL
132
n
132
VAL
132
A
LYS
133
n
133
LYS
133
A
GLU
134
n
134
GLU
134
A
GLY
135
n
135
GLY
135
A
MET
136
n
136
MET
136
A
ASN
137
n
137
ASN
137
A
ILE
138
n
138
ILE
138
A
VAL
139
n
139
VAL
139
A
GLU
140
n
140
GLU
140
A
ALA
141
n
141
ALA
141
A
MET
142
n
142
MET
142
A
GLU
143
n
143
GLU
143
A
ARG
144
n
144
ARG
144
A
PHE
145
n
145
PHE
145
A
GLY
146
n
146
GLY
146
A
SER
147
n
147
SER
147
A
ARG
148
n
148
ARG
148
A
ASN
149
n
149
ASN
149
A
GLY
150
n
150
GLY
150
A
LYS
151
n
151
LYS
151
A
THR
152
n
152
THR
152
A
SER
153
n
153
SER
153
A
LYS
154
n
154
LYS
154
A
LYS
155
n
155
LYS
155
A
ILE
156
n
156
ILE
156
A
THR
157
n
157
THR
157
A
ILE
158
n
158
ILE
158
A
ALA
159
n
159
ALA
159
A
ASP
160
n
160
ASP
160
A
CYS
161
n
161
CYS
161
A
GLY
162
n
162
GLY
162
A
GLN
163
n
163
GLN
163
A
LEU
164
n
164
LEU
164
A
GLU
165
n
165
GLU
165
A
author_and_software_defined_assembly
PQS
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
57
A
N
ILE
57
A
O
MET
61
A
O
MET
61
A
N
GLY
64
A
N
GLY
64
A
O
PHE
112
A
O
PHE
112
A
N
CYS
115
A
N
CYS
115
A
O
ILE
97
A
O
ILE
97
A
O
LEU
98
A
O
LEU
98
A
N
PHE
129
A
N
PHE
129
A
N
LYS
131
A
N
LYS
131
A
O
GLU
23
A
O
GLU
23
A
N
PHE
22
A
N
PHE
22
A
O
VAL
6
A
O
VAL
6
A
N
ALA
11
A
N
ALA
11
A
O
THR
157
A
O
THR
157
1
A
A
OD1
CD
ASP
ARG
9
19
2.06
1
A
A
SG
NZ
CYS
LYS
52
155
2.13
1
A
A
MET
VAL
1
2
-140.68
1
6.79
0.50
120.30
127.09
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
19
19
19
N
1
-6.24
0.50
120.30
114.06
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
19
19
19
N
1
6.45
0.90
118.30
124.75
A
A
A
CB
CG
OD2
ASP
ASP
ASP
27
27
27
N
1
-6.08
0.50
120.30
114.22
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
148
148
148
N
1
5.06
0.50
120.30
125.36
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
148
148
148
N
1
5.57
0.90
118.30
123.87
A
A
A
CB
CG
OD2
ASP
ASP
ASP
160
160
160
N
1
A
A
O
O
HOH
HOH
2042
2221
2.12
1_555
4_467
1
A
VAL
2
113.30
152.31
1
A
LEU
17
-99.96
-63.82
1
A
PHE
60
-132.08
-81.09
1
A
ASN
71
-147.09
-3.38
1
A
GLU
81
-112.63
-71.15
1
A
LYS
133
-99.10
-72.19
15.53
-0.47000
0.00000
0.00000
0.55000
0.00000
-0.08000
0.974
0.965
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.186
0.130
0.132
1.65
15.00
506
15413
3.200
90.7
1.779
0.062
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.206
0.100
0.80
0.80
1.40
PDB ENTRY 1CWH
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.65
15.00
222
1501
13
0
1266
0.007
0.021
1320
0.001
0.020
1139
1.541
1.960
1766
0.820
3.000
2667
7.014
5.000
164
0.101
0.200
179
0.006
0.020
1479
0.003
0.020
278
0.253
0.300
259
0.282
0.300
1533
0.253
0.300
259
0.093
0.500
744
0.216
0.500
260
0.150
0.300
8
0.291
0.300
48
0.211
0.500
54
2.236
1.500
808
3.047
2.000
1288
4.229
3.000
512
5.876
4.500
478
0.2360
0.1230
1.69
38
1062
20
1.650
24.000
1W8M
17641
-3.000
0.04000
1
16.0000
10.500
90.4
0.05000
1.65
1.68
10.000
1
86.1
refinement
REFMAC
5.1.24
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
Enzymatic and Structural Characterisation of Non Peptide Ligand Cyclophilin Complexes
1
N
N
2
N
N
3
N
N
A
VAL
29
A
VAL
29
HELX_P
A
GLY
42
A
GLY
42
1
1
14
A
THR
119
A
THR
119
HELX_P
A
ASP
123
A
ASP
123
5
2
5
A
GLY
135
A
GLY
135
HELX_P
A
ARG
144
A
ARG
144
1
3
10
ISOMERASE
COMPLEX (ISOMERASE-IMMUNOSUPPRESSANT), NON PEPTIDE LIGAND, ISOMERASE, MULTIGENE FAMILY, ROTAMASE
1W8M
PDB
1
1W8M
PPIA_HUMAN
UNP
1
P62937
1
1
1W8M
1
1
1W8M
A
1
1
1
1
164
1W8M
2
165
P62937
A
2
2
165
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
55
A
ARG
55
A
ILE
57
A
ILE
57
A
MET
61
A
MET
61
A
GLY
64
A
GLY
64
A
PHE
112
A
PHE
112
A
CYS
115
A
CYS
115
A
ILE
97
A
ILE
97
A
MET
100
A
MET
100
A
VAL
128
A
VAL
128
A
VAL
132
A
VAL
132
A
GLU
15
A
GLU
15
A
LEU
24
A
LEU
24
A
THR
5
A
THR
5
A
VAL
12
A
VAL
12
A
ILE
156
A
ILE
156
A
GLN
163
A
GLN
163
BINDING SITE FOR RESIDUE E1P A1166
Software
7
A
ARG
55
A
ARG
55
7
1_555
A
PHE
60
A
PHE
60
7
1_555
A
GLN
63
A
GLN
63
7
1_555
A
ALA
101
A
ALA
101
7
1_555
A
ASN
102
A
ASN
102
7
1_555
A
PHE
113
A
PHE
113
7
1_555
A
HIS
126
A
HIS
126
7
1_555
19
P 21 21 21