1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Hsu, S.-T.D. Breukink, E. Tischenko, E. Lutters, M.A.G. de Kruijff, B. Kaptein, R. Bonvin, A.M.J.J. van Nuland, N.A.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C3 H7 N O2 89.093 D-ALANINE D-peptide linking C4 H9 N O2 103.120 D-ALPHA-AMINOBUTYRIC ACID D-peptide linking C4 H7 N O2 101.104 n (2Z)-2-AMINOBUT-2-ENOIC ACID Z-DEHYDROBUTYRINE peptide linking C3 H5 N O2 87.077 n 2-AMINO-ACRYLIC ACID 2,3-DIDEHYDROALANINE peptide linking C15 H26 F2 O7 P2 418.307 (2E,6E)-12-fluoro-11-(fluoromethyl)-3,7-dimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate non-polymer C5 H9 N O4 147.129 GAMMA-D-GLUTAMIC ACID D-GLUTAMIC ACID D-gamma-peptide, C-delta linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C11 H19 N O8 293.270 N-acetyl-alpha-muramic acid D-saccharide, alpha linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat. Struct. Mol. Biol. 1545-9993 11 963 967 10.1038/nsmb830 15361862 The nisin-lipid II complex reveals a pyrophosphate cage that provides a blueprint for novel antibiotics. 2004 US Biochemistry BICHAW 0033 0006-2960 41 7670 10.1021/BI025679T 12056898 Mapping the Targeted Membrane Pore Formation Mechanism by Solution NMR: The Nisin Z and Lipid II Interaction in Sds Micelles 2002 US Science SCIEAS 0038 0036-8075 286 2361 10.1126/SCIENCE.286.5448.2361 10600751 Use of the Cell Wall Precursor Lipid II by a Pore- Forming Peptide Antibiotic 1999 US Proteins: Struct.,Funct., Genet. PSFGEY 0867 0887-3585 50 496 10.1002/PROT.10299 12557191 Refinement of Protein Structures in Explicit Solvent 2003 US J.Am.Chem.Soc. JACSAT 0004 0002-7863 125 1731 10.1021/JA026939X 12580598 Haddock: A Protein-Protein Docking Approach Based on Biochemical or Biophysical Information 2003 MUB A 1 HAS WRONG CHIRALITY AT ATOM C9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 489.542 ALA-FGA-LYS-DAL-DAL PEPTIDE 1 nat polymer 3345.146 Lantibiotic 1 nat polymer 496.463 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-alpha-muramic acid 1 man branched 418.307 (2E,6E)-12-fluoro-11-(fluoromethyl)-3,7-dimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate 1 syn non-polymer no yes A(FGA)K(DAL)(DAL) AEKAA L polypeptide(L) no yes I(DBU)(DAL)I(DHA)LC(DBB)PGCK(DBB)GALMGCNMK(DBB)A(DBB)CNCSIHV(DHA)K ITAISLCTPGCKTGALMGCNMKTATCNCSIHVSK N polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 5 71816 MONARTHROPALPUS FLAVUS sample 1 34 1358 Lactococcus lactis atom_site citation citation_author database_PDB_caveat pdbx_nmr_spectrometer pdbx_validate_polymer_linkage atom_site chem_comp database_PDB_caveat entity entity_poly entity_poly_seq entity_src_nat pdbx_database_status pdbx_entity_nonpoly pdbx_nmr_software pdbx_nmr_spectrometer pdbx_nonpoly_scheme pdbx_poly_seq_scheme pdbx_struct_assembly_gen pdbx_struct_assembly_prop pdbx_struct_mod_residue pdbx_struct_oper_list pdbx_unobs_or_zero_occ_atoms pdbx_validate_chiral pdbx_validate_close_contact struct_asym struct_conn struct_ref struct_ref_seq struct_ref_seq_dif struct_site_gen atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_unobs_or_zero_occ_atoms pdbx_validate_chiral pdbx_validate_close_contact struct_asym struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Atomic model Database references Derived calculations Structure summary Version format compliance Other Advisory Atomic model Data collection Database references Advisory Atomic model Data collection Database references Derived calculations Non-polymer description Other Polymer sequence Source and taxonomy Structure summary Advisory Atomic model Data collection Derived calculations Structure summary 1 0 2005-03-07 1 1 2011-07-13 1 2 2012-11-30 2 0 2018-01-17 3 0 2020-07-08 4 0 2020-07-29 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.label_atom_id _citation.journal_abbrev _citation.page_last _citation.pdbx_database_id_DOI _citation.title _citation_author.name _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.group_PDB _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.type_symbol _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.type _database_PDB_caveat.text _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.pdbx_organism_scientific _entity_src_nat.strain _pdbx_database_status.status_code_mr _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_prop.value _pdbx_struct_mod_residue.details _pdbx_struct_oper_list.symmetry_operation _pdbx_validate_chiral.auth_seq_id _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.auth_seq_id_2 _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_seq_id _struct_ref.db_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_seq_one_letter_code _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_db_accession _struct_ref_seq.seq_align_end _struct_site_gen.auth_asym_id _struct_site_gen.auth_comp_id _struct_site_gen.auth_seq_id _struct_site_gen.label_asym_id _struct_site_gen.label_comp_id _struct_site_gen.label_seq_id _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _database_PDB_caveat.text _pdbx_struct_assembly_gen.asym_id_list _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.auth_seq_id_2 _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id L MUB 2 n A MUB 1 L NAG 1 n A NAG 2 a-D-GlcpNAc3<C3O2> MurNAc DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc 2005-03-07 SPRSDE SOLUTION STRUCTURE OF THE LANTIBIOTIC ACTAGARDINE SOLUTION STRUCTURE OF TYPE B LANTIBIOTICS MERSACIDIN IN MEOH/H2O MIXTURE SOLUTION STRUCTURE OF TYPE B LANTIBIOTICS MERSACIDIN IN DPC MICELLES SOLUTION STRUCTURE OF TYPE B LANTIBIOTICS MERSACIDIN BOUND TO LIPID II IN DPC MICELLES CRYSTAL STRUCTURE OF THE TUPE B LANTIBIOTIC MERSACIDIN SOLUTION STRUCTURE OF THE LANTIBIOTIC EPILANCIN 15X SOLUTION STRUCTURE OF THE LANTIBIOTIC CINNAMYCIN COMPLEXED WITH LYSOPHOSPHATIDYLETHANOLAMINE SOLUTION STRUCTURE OF LCH-ALPHA PEPTIDE FROM TWO-COMPONENT LANTIBIOTIC SYSTEM LICHENICIDIN VK21 A1 SOLUTION STRUCTURE OF LCH-BETA PEPTIDE FROM TWO-COMPONENT LANTIBIOTIC LICHENICIDIN VK21 A2 PDBE Y PDBE 2004-11-19 REL REL oligosaccharide DGlcpNAcb1-4MurNAc1-ROH 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,2,1/[a2122h-1a_1-5_2*NCC/3=O_3*OC^RCO/4=O/3C][a2122h-1b_1-5_2*NCC/3=O]/1-2/a4-b1 3 PDB2Glycan 1.1.0 WURCS [][a-D-GlcpNAc]{[(3+1)][&lt;C3O1&gt;]{}[(4+1)][b-D-GlcpNAc]{}} 3 PDB-CARE LINUCS C1 O4 NAG MUB 2 1 3 O1 HO4 sing n n FDF (2E,6E)-12-fluoro-11-(fluoromethyl)-3,7-dimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate NISIN Z IS A LANTIBIOTIC. THE LANTIBIOTICS ARE CHARACTERIZED BY LANTHIONINE AND/OR METHYLLANTHIONINE NONPROTEINOGENIC AMINO ACIDS. HERE, NISIN Z IS REPRESENTED BY THE SEQUENCE (SEQRES) GROUP: 1 NAME: NISIN Z CHAIN: N COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 34 DESCRIPTION: NISIN Z IS A PENTACYCLIC PEPTIDE. THIOETHER BONDS WITH CYSTEINE RESULT IN FIVE CYCLIC STRUCTURES ALONG THE PEPTIDE CHAIN. CROSSLINK 3-7 METHYLLANTHIONINE (DAL-CYS) CROSSLINK 8-11 BETA-METHYLLANTHIONINE (DBB-CYS) CROSSLINK 13-19 BETA-METHYLLANTHIONINE (DBB-CYS) CROSSLINK 23-26 BETA-METHYLLANTHIONINE (DBB-CYS) CROSSLINK 25-28 BETA-METHYLLANTHIONINE (DBB-CYS) Lantibiotic Nisin Z is a heptacyclic peptide. Post Translational maturation of lantibiotics involves the enzymic conversion of Thr, and Ser into dehydrated AA and the formation of thioether bonds with cysteine. Thioether bonds with cysteine result in five cyclic structures along the peptide chain. This is followed by membrane translocation and cleavage of the modified precursor. Nisin A Polypeptide THE STRUCTURE WAS DETERMINED USING MULTIDIMENSIONAL NMR SPECTROSCOPY ON 15N-LABELLED NISIN IN COMPLEX WITH UNLABELLED 3-LIPID II. INTERMOLECULAR HYDROGEN BONDS WERE IDENTIFIED AND USED IN STRUCTURAL CALCULATION BY 31P- EDITED 1H-15N CT HSQC. RMSD CLUSTERING AND LOWEST TOTAL ENERGY 200 20 1H-15N CT HSQC 31P 1D 1H-13C HSQC 1H-13C HMBC 31P 1D 1H-15N-NOESY HSQC 1H-1H NOESY 1H-15N TOCSY- HSQC 1H-1H TOCSY 1H-1H COSY 1H-15N-NOESY HSQC 1H-1H NOESY 1.0 atm 300.0 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. THE ENSEMBLE OF STRUCTURES IS SUPERIMPOSED ON THE CA OF NISIN RESIDUES 1-12 (CHAIN N), THE HEAVY ATOMS OF MURNAC, PYROPHOSPHATE AND THE FIRST ISOPRENE OF 3-LIPID II (CHAIN L) AS THESE ARE THE ONLY SEGMENTS THAT HAVE SUFFICIENT DISTANCE RESTRAINTS TO DEFINE THE COMPLEX STRUCTURE. OTHER RESIDUES NAMELY RESIDUES 13-34 (ESPECIALLY RESIDUES 20-34) OF NISIN, THE PENTAPEPTIDE AND TERMINAL ISOPRENE UNITS OF 3-LIPID II ARE FLEXIBLE AS SUPPORTED BY DYNAMICS DATA. THE ATOM OCCUPANCY OF THE C- TERMINAL TAIL OF NISIN (RESIDUES 20-34) HAS BEEN MODIFIED TO BE 0.3 TO REFLECT THEIR DISORDER/FLEXIBILITY. HADDOCK 100% D6-DMSO BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE,SIMONSON,WARREN refinement CNS 1.1 structure solution NMRView VIEW structure solution CNS 500 Bruker AVANCE 600 Bruker AVANCE 750 Bruker AVANCE 900 Bruker AVANCE FPP 35 4 FDF FDF 101 L ALA 3 n 1 ALA 3 L FGA 4 n 2 FGA 4 L LYS 5 n 3 LYS 5 L DAL 6 n 4 DAL 6 L DAL 7 n 5 DAL 7 L ILE 1 n 1 ILE 1 N DBU 2 n 2 DBU 2 N DAL 3 n 3 DAL 3 N ILE 4 n 4 ILE 4 N DHA 5 n 5 DHA 5 N LEU 6 n 6 LEU 6 N CYS 7 n 7 CYS 7 N DBB 8 n 8 DBB 8 N PRO 9 n 9 PRO 9 N GLY 10 n 10 GLY 10 N CYS 11 n 11 CYS 11 N LYS 12 n 12 LYS 12 N DBB 13 n 13 DBB 13 N GLY 14 n 14 GLY 14 N ALA 15 n 15 ALA 15 N LEU 16 n 16 LEU 16 N MET 17 n 17 MET 17 N GLY 18 n 18 GLY 18 N CYS 19 n 19 CYS 19 N ASN 20 n 20 ASN 20 N MET 21 n 21 MET 21 N LYS 22 n 22 LYS 22 N DBB 23 n 23 DBB 23 N ALA 24 n 24 ALA 24 N DBB 25 n 25 DBB 25 N CYS 26 n 26 CYS 26 N ASN 27 n 27 ASN 27 N CYS 28 n 28 CYS 28 N SER 29 n 29 SER 29 N ILE 30 n 30 ILE 30 N HIS 31 n 31 HIS 31 N VAL 32 n 32 VAL 32 N DHA 33 n 33 DHA 33 N LYS 34 n 34 LYS 34 N author_and_software_defined_assembly PISA 2 dimeric 1610 3 3620 N DBU 2 modified residue B DBU 2 THR N DHA 5 modified residue B DHA 5 SER N DHA 33 modified residue B DHA 33 SER 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 L F1 FDF 101 D F1 FDF 1 1 N 1 L F2 FDF 101 D F2 FDF 1 1 N 2 L F1 FDF 101 D F1 FDF 1 1 N 2 L F2 FDF 101 D F2 FDF 1 1 N 3 L F1 FDF 101 D F1 FDF 1 1 N 3 L F2 FDF 101 D F2 FDF 1 1 N 4 L F1 FDF 101 D F1 FDF 1 1 N 4 L F2 FDF 101 D F2 FDF 1 1 N 5 L F1 FDF 101 D F1 FDF 1 1 N 5 L F2 FDF 101 D F2 FDF 1 1 N 6 L F1 FDF 101 D F1 FDF 1 1 N 6 L F2 FDF 101 D F2 FDF 1 1 N 7 L F1 FDF 101 D F1 FDF 1 1 N 7 L F2 FDF 101 D F2 FDF 1 1 N 8 L F1 FDF 101 D F1 FDF 1 1 N 8 L F2 FDF 101 D F2 FDF 1 1 N 9 L F1 FDF 101 D F1 FDF 1 1 N 9 L F2 FDF 101 D F2 FDF 1 1 N 10 L F1 FDF 101 D F1 FDF 1 1 N 10 L F2 FDF 101 D F2 FDF 1 1 N 11 L F1 FDF 101 D F1 FDF 1 1 N 11 L F2 FDF 101 D F2 FDF 1 1 N 12 L F1 FDF 101 D F1 FDF 1 1 N 12 L F2 FDF 101 D F2 FDF 1 1 N 13 L F1 FDF 101 D F1 FDF 1 1 N 13 L F2 FDF 101 D F2 FDF 1 1 N 14 L F1 FDF 101 D F1 FDF 1 1 N 14 L F2 FDF 101 D F2 FDF 1 1 N 15 L F1 FDF 101 D F1 FDF 1 1 N 15 L F2 FDF 101 D F2 FDF 1 1 N 16 L F1 FDF 101 D F1 FDF 1 1 N 16 L F2 FDF 101 D F2 FDF 1 1 N 17 L F1 FDF 101 D F1 FDF 1 1 N 17 L F2 FDF 101 D F2 FDF 1 1 N 18 L F1 FDF 101 D F1 FDF 1 1 N 18 L F2 FDF 101 D F2 FDF 1 1 N 19 L F1 FDF 101 D F1 FDF 1 1 N 19 L F2 FDF 101 D F2 FDF 1 1 N 20 L F1 FDF 101 D F1 FDF 1 1 N 20 L F2 FDF 101 D F2 FDF 1 1 N 1 A C9 MUB 1 PLANAR 2 A C9 MUB 1 PLANAR 4 A C9 MUB 1 PLANAR 5 A C9 MUB 1 PLANAR 7 A C9 MUB 1 PLANAR 10 A C9 MUB 1 PLANAR 11 A C9 MUB 1 PLANAR 12 A C9 MUB 1 PLANAR 13 A C9 MUB 1 PLANAR 15 A C9 MUB 1 PLANAR 16 A C9 MUB 1 PLANAR 17 A C9 MUB 1 PLANAR 18 A C9 MUB 1 PLANAR 19 A C9 MUB 1 PLANAR 20 A C9 MUB 1 PLANAR 1 L L HZ3 O LYS DAL 5 7 1.56 3 L A HG2 H62 FGA MUB 4 1 1.15 3 N L HB2 H5 PRO FDF 9 101 1.33 3 N L HG22 O1 ILE FDF 1 101 1.54 4 L A HD3 H5 LYS MUB 5 1 1.30 4 N N O H GLY GLY 14 18 1.60 5 N L HG22 O1 ILE FDF 1 101 1.58 5 N N HD1 O HIS LYS 31 34 1.58 6 L A HG2 H62 FGA MUB 4 1 1.23 9 N L HB2 H5 PRO FDF 9 101 1.28 9 N L HG22 O1 ILE FDF 1 101 1.52 9 N N O H GLY GLY 14 18 1.59 10 L L HZ3 OXT LYS DAL 5 7 1.56 13 L A HG3 H62 FGA MUB 4 1 1.33 14 L A HG2 H62 FGA MUB 4 1 1.26 14 L A OXT H61 FGA MUB 4 1 1.56 16 N N HD1 O HIS LYS 31 34 1.59 16 L A OXT HO6 FGA MUB 4 1 1.60 17 L A H1 H4 ALA MUB 3 1 0.84 18 A A O3 H1 MUB NAG 1 2 1.55 19 L A HZ2 O4 LYS MUB 5 1 1.58 20 L A HB1 H61 ALA MUB 3 1 1.29 1 N DBB 8 147.76 -58.97 1 N LYS 12 -151.30 1.93 1 N MET 17 -154.38 -46.71 1 N CYS 19 63.18 82.90 1 N ASN 20 -57.88 -81.18 1 N HIS 31 -126.21 -82.45 2 L DAL 6 -71.81 -73.98 2 N DBB 13 -73.72 46.61 2 N MET 17 -160.00 -33.77 2 N CYS 19 65.39 91.33 2 N MET 21 73.82 39.53 3 L DAL 6 -74.60 21.26 3 N DBB 8 150.47 -53.57 3 N DBB 13 -73.72 46.83 3 N MET 17 -138.14 -30.53 3 N CYS 19 60.11 79.16 3 N ASN 20 -68.09 -80.10 3 N MET 21 75.27 -31.16 3 N DBB 23 174.54 38.88 3 N ALA 24 -117.37 74.54 3 N ILE 30 -90.11 55.63 4 L DAL 6 -178.22 -82.63 4 N LEU 6 -101.79 68.85 4 N CYS 7 -63.52 99.10 4 N DBB 8 150.92 -57.27 4 N DBB 13 -73.79 44.97 4 N MET 17 -150.61 -36.02 4 N CYS 19 70.22 87.97 4 N MET 21 74.53 -49.92 5 L DAL 6 145.50 40.04 5 N DBB 8 153.14 -53.07 5 N DBB 13 -81.60 25.69 5 N MET 17 -149.99 -57.69 5 N CYS 19 65.63 70.83 5 N ASN 20 70.51 -81.51 6 L DAL 6 -75.27 46.55 6 N CYS 7 -59.40 90.44 6 N DBB 8 150.13 -54.95 6 N DBB 13 -73.93 32.70 6 N MET 17 -152.97 -42.41 6 N ASN 20 174.42 -23.20 6 N ILE 30 -91.79 32.34 7 L DAL 6 170.25 -37.64 7 N CYS 7 -59.99 99.45 7 N DBB 8 146.75 -53.50 7 N DBB 13 -70.51 52.35 7 N MET 17 -136.07 -58.47 7 N CYS 19 64.80 177.59 7 N ASN 20 -119.19 -71.63 7 N MET 21 73.57 -47.13 7 N DBB 23 155.26 33.29 8 N DBB 13 -70.92 50.83 8 N ALA 15 -79.02 21.81 8 N MET 17 -172.30 -30.90 8 N ASN 20 179.32 -22.05 8 N MET 21 75.76 -65.11 9 N DBB 8 150.53 -55.48 9 N DBB 13 -76.75 28.34 9 N MET 17 -158.99 -41.37 9 N CYS 19 63.11 88.32 9 N MET 21 72.13 -49.53 10 N DBB 8 140.28 -51.06 10 N LYS 12 -140.84 14.19 10 N DBB 13 -72.49 53.85 10 N MET 17 -163.81 -42.48 10 N CYS 19 65.03 77.38 10 N ASN 20 -68.84 -85.39 11 N DBB 8 143.70 -49.16 11 N DBB 13 -71.95 50.51 11 N ALA 15 -75.07 28.20 11 N MET 17 179.56 -26.65 11 N DBB 23 -177.58 46.61 12 N DBB 8 143.59 -55.55 12 N DBB 13 -71.21 58.25 12 N MET 17 -154.64 -49.22 12 N CYS 19 63.45 99.75 12 N ASN 20 -72.79 -98.27 12 N ILE 30 -81.86 35.64 13 N DBB 13 -76.07 35.24 13 N ASN 20 73.71 -88.65 14 N CYS 7 -61.82 99.58 14 N DBB 13 -68.14 46.07 14 N ALA 15 -75.16 29.46 14 N MET 17 178.46 -33.69 14 N CYS 19 75.05 -65.87 14 N ASN 20 -173.18 -39.26 14 N MET 21 74.54 -43.78 14 N DBB 23 -174.89 26.50 15 L DAL 6 148.83 -34.55 15 N DBB 8 150.40 -58.71 15 N DBB 13 -75.98 24.17 15 N MET 17 -156.02 -44.07 15 N CYS 19 75.01 -24.27 15 N ASN 20 -172.07 -68.37 15 N SER 29 -69.29 98.60 16 N DBB 8 146.93 -53.89 16 N DBB 13 -71.36 54.04 16 N MET 17 -132.83 -66.27 16 N ASN 20 -83.05 -97.80 16 N DBB 23 147.54 32.18 16 N ALA 24 -92.82 57.44 16 N ILE 30 -86.91 49.49 17 N DBB 13 -73.49 50.91 17 N ALA 15 -76.73 28.51 17 N MET 17 -174.22 -28.53 17 N CYS 19 64.22 70.08 17 N ASN 20 -128.41 -68.79 17 N DBB 23 -70.61 58.28 18 L DAL 6 171.54 -80.63 18 N DBB 13 -73.58 52.26 18 N ALA 15 -77.60 37.21 18 N MET 17 175.46 -34.28 18 N MET 21 76.41 -28.66 19 L DAL 6 168.96 29.97 19 N DBB 8 151.16 -52.95 19 N DBB 13 -73.79 52.82 19 N ALA 15 -78.18 28.35 19 N MET 17 -143.10 -12.74 19 N MET 21 70.87 -1.49 19 N DBB 23 137.40 33.35 19 N HIS 31 -95.08 -71.87 20 L DAL 6 -71.59 0.68 20 N CYS 7 -66.03 97.78 20 N DBB 8 145.18 -50.86 20 N DBB 13 -71.67 52.44 20 N ALA 15 -78.86 29.70 20 N MET 17 -174.47 -46.32 20 N CYS 19 65.31 62.64 20 N ASN 20 70.42 -57.45 NAG-MUB-ALA-FGA-LYS-DAL-DAL PEPTIDE, NISIN Z The solution structure of the nisin-lipid II complex 1 N N 2 N N 3 N N 4 N N N DBB 8 B DBB 8 HELX_P N DBB 13 B DBB 13 1 1 6 covale 1.318 both L ALA 3 A C ALA 1 1_555 L FGA 4 A N FGA 2 1_555 covale 1.326 one L ALA 3 A N ALA 1 1_555 A MUB 1 C C10 MUB 1_555 covale 1.322 both L FGA 4 A CD FGA 2 1_555 L LYS 5 A N LYS 3 1_555 covale 1.334 both L LYS 5 A C LYS 3 1_555 L DAL 6 A N DAL 4 1_555 covale 1.337 both L DAL 6 A C DAL 4 1_555 L DAL 7 A N DAL 5 1_555 covale 1.605 one L FDF 101 D PB FDF 1_555 A MUB 1 C O1 MUB 1_555 covale 1.341 both N ILE 1 B C ILE 1 1_555 N DBU 2 B N DBU 2 1_555 covale 1.319 both N DBU 2 B C DBU 2 1_555 N DAL 3 B N DAL 3 1_555 covale 1.318 both N DAL 3 B C DAL 3 1_555 N ILE 4 B N ILE 4 1_555 covale 1.794 none N DAL 3 B CB DAL 3 1_555 N CYS 7 B SG CYS 7 1_555 covale 1.336 both N ILE 4 B C ILE 4 1_555 N DHA 5 B N DHA 5 1_555 covale 1.321 both N DHA 5 B C DHA 5 1_555 N LEU 6 B N LEU 6 1_555 covale 1.319 one N CYS 7 B C CYS 7 1_555 N DBB 8 B N DBB 8 1_555 covale 1.346 both N DBB 8 B C DBB 8 1_555 N PRO 9 B N PRO 9 1_555 covale 1.815 none N DBB 8 B CB DBB 8 1_555 N CYS 11 B SG CYS 11 1_555 covale 1.326 one N LYS 12 B C LYS 12 1_555 N DBB 13 B N DBB 13 1_555 covale 1.328 both N DBB 13 B C DBB 13 1_555 N GLY 14 B N GLY 14 1_555 covale 1.828 none N DBB 13 B CB DBB 13 1_555 N CYS 19 B SG CYS 19 1_555 covale 1.321 one N LYS 22 B C LYS 22 1_555 N DBB 23 B N DBB 23 1_555 covale 1.328 both N DBB 23 B C DBB 23 1_555 N ALA 24 B N ALA 24 1_555 covale 1.823 none N DBB 23 B CB DBB 23 1_555 N CYS 26 B SG CYS 26 1_555 covale 1.323 one N ALA 24 B C ALA 24 1_555 N DBB 25 B N DBB 25 1_555 covale 1.323 both N DBB 25 B C DBB 25 1_555 N CYS 26 B N CYS 26 1_555 covale 1.817 none N DBB 25 B CB DBB 25 1_555 N CYS 28 B SG CYS 28 1_555 covale 1.326 both N VAL 32 B C VAL 32 1_555 N DHA 33 B N DHA 33 1_555 covale 1.324 both N DHA 33 B C DHA 33 1_555 N LYS 34 B N LYS 34 1_555 covale 1.424 both A MUB 1 C O4 MUB 1_555 A NAG 2 C C1 NAG 1_555 PEPTIDE/ANTIBIOTIC PEPTIDE-ANTIBIOTIC COMPLEX, LANTIBIOTIC, ANTIMICROBIAL, BACTERIOCIN, THIOESTER, PORE FORMATION, PYROPHOSPHATE CAGE, FOOD PRESERVATIVE 1WCO PDB 1 1 1WCO Q7BB86_9LACT UNP 2 24 Q7BB86 ITSISLCTPGCKTGALMGCNMKTATCNCSIHVSK 3 7 1WCO 3 7 1WCO L 1 1 5 24 57 1WCO 1 34 Q7BB86 N 2 1 34 2 SER conflict DAL 3 1WCO N Q7BB86 UNP 26 3 2 THR conflict DBB 8 1WCO N Q7BB86 UNP 31 8 2 THR conflict DBB 13 1WCO N Q7BB86 UNP 36 13 2 THR conflict DBB 23 1WCO N Q7BB86 UNP 46 23 2 THR conflict DBB 25 1WCO N Q7BB86 UNP 48 25 1 P 1